RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7941
(238 letters)
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 176 bits (447), Expect = 1e-54
Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 38/227 (16%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
I+ G F C V D+ ++W
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAG-------------------------DAKDKDISW 37
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+ E + N R+SV ND ++ TL I + +D G Y C V T+
Sbjct: 38 FSPNG-------EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
A + V I + + EG A +VC P I W+ +++I++ +
Sbjct: 91 ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDV-- 147
Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV-SKRLMLHVH 234
+ + + L + + +++ G Y+C + K + + V+
Sbjct: 148 --RFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192
Score = 114 bits (288), Expect = 4e-31
Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 39/237 (16%)
Query: 21 AQGRDA-IFTCVVNNLGGHRVSSSVT--------------DTHVNTGGSIVFPTDSSAM- 64
A DA I+ CVV G + ++V G V D +
Sbjct: 69 ANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSL 128
Query: 65 --KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN-- 120
+ W + ++ + R V N+ L IR +++ D G Y C+
Sbjct: 129 PPTIIWKHKG-------RDVILKKDVRFIVLSNN----YLQIRGIKKTDEGTYRCEGRIL 177
Query: 121 -TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
+ + + V +PP + + ++ + G S LVC A G+P P ++W ++ E
Sbjct: 178 ARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDG--E 235
Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
I + +FS +S L++ V +++ Y CIA N G + L V
Sbjct: 236 PIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAG---EQDASIHLKVF 289
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 137 bits (345), Expect = 9e-41
Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 57/226 (25%)
Query: 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA 75
+ V +G TC + +++ W ++
Sbjct: 3 KVVLGKKGDTVELTCTASQKK--------------------------SIQFHWKNSNQIK 36
Query: 76 VLAIHEHVITNN-------ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+L +T A + D + L I++++ ED Y+C+V Q+
Sbjct: 37 ILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL 96
Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
+ D + +G S L ++ +P + R K I
Sbjct: 97 LVFGLTANSDTH---------LLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------- 139
Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ LS++++ + G + C V ++ + V
Sbjct: 140 ------QGGKTLSVSQLELQDSGTWTCTVLQNQ-KKVEFKIDIVVL 178
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 134 bits (339), Expect = 1e-39
Identities = 49/229 (21%), Positives = 78/229 (34%), Gaps = 44/229 (19%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
EP + E + C + + +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMY------------------------SY 38
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
W K N L+ T +A+ I R ED G Y C + K
Sbjct: 39 WTK---------------NGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKA 83
Query: 128 MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPP 187
A +EV PDI+ + EG A + CK+ GYP P+ WR+++N SN
Sbjct: 84 NATIEVKAAPDITGHKR--SENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSS 141
Query: 188 SSQKVFSVESE-VLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
+ + E+ L++ + +E G Y+C A N + + S +L V
Sbjct: 142 GRFFIINKENYTELNIVNLQITEDPGEYECNATNSI-GSASVSTVLRVR 189
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 126 bits (318), Expect = 1e-36
Identities = 39/211 (18%), Positives = 70/211 (33%), Gaps = 37/211 (17%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
I+ G F C V G ++W
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVA-------------------GDAKDKD------ISW 37
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+ E + N R+SV ND ++ TL I + +D G Y C V T+
Sbjct: 38 FSPNG-------EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
A + V I + + EG A +VC P I W+ +++I++ +
Sbjct: 91 ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDV-- 147
Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ + + L + + +++ G Y+C
Sbjct: 148 --RFIVLSNNYLQIRGIKKTDEGTYRCEGRI 176
Score = 69.1 bits (169), Expect = 1e-14
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 10/105 (9%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSS 189
L+V I P + G S +C+ G I+W N E + + S
Sbjct: 3 LQVDIVPS--------QGEISVGESKFFLCQVAGDAKDKDISWFS-PNGEKLSPNQQRIS 53
Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+S L++ + G Y+C+ + + +
Sbjct: 54 VVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 126 bits (317), Expect = 4e-36
Identities = 36/232 (15%), Positives = 80/232 (34%), Gaps = 39/232 (16%)
Query: 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
P + + G + C + D +A+ V W D
Sbjct: 7 PKDLYVVEYGSNMTIECKF---------------------PVEKQLDLAALIVYWEMEDK 45
Query: 74 KAVLAIHEHVITNNA------RLSVTHNDAN--TWTLNIRSVRREDRGYYMCQVNTNPMT 125
+ +H R + + + L I V+ +D G Y C ++
Sbjct: 46 NIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGAD 105
Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
+ ++V P + ++ ++ P +L C+A+GYP ++ W D++ + ++
Sbjct: 106 YKRITVKVNAPYNKINQRIL--VVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTT 163
Query: 186 PPSSQ---KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+S+ K+F+V S + ++ + + C P + L +
Sbjct: 164 TTNSKREEKLFNVTSTL----RINTTTNEIFYCTFRRLD-PEENHTAELVIP 210
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 118 bits (298), Expect = 1e-34
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 28/134 (20%)
Query: 4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
V+G + F +NVT+ +G AI TC V+
Sbjct: 3 VKGSQGQFPLT-QNVTVVEGGTAILTCRVDQNDNT------------------------- 36
Query: 64 MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
+ W + L + + R+ + + ++++ V D G Y C + T P
Sbjct: 37 -SLQWSNPAQQ-TLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMP 94
Query: 124 MTKQMAFLEVVIPP 137
+ A+L V+ P
Sbjct: 95 VKTSKAYLTVLGVP 108
Score = 51.0 bits (122), Expect = 7e-09
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE-----VLS 201
++ V EGG+A L C+ + W + + + +S
Sbjct: 15 NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74
Query: 202 LTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
++ V+ S+ G Y C P + + L V
Sbjct: 75 VSDVSLSDEGQYTCSLFTM--PVKTSKAYLTV 104
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 120 bits (302), Expect = 4e-34
Identities = 34/212 (16%), Positives = 57/212 (26%), Gaps = 33/212 (15%)
Query: 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK----ADT 73
VT G T + ++V+W K +
Sbjct: 1 VTAFLGERVTLTSYWRRVSL-----------------------GPEIEVSWFKLGPGEEQ 37
Query: 74 KAVLAIHEHVITNNARLSV---THNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ-MA 129
+ +H VI H ANT+ L + + G Y+C++
Sbjct: 38 VLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQE 97
Query: 130 FLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSS 189
L VV P +S S P+ + C +P P + W + E +
Sbjct: 98 HLSVVKPLTLS--VHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGV 155
Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
K V + + C+ N
Sbjct: 156 MKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDK 187
Score = 45.4 bits (107), Expect = 3e-06
Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 17/101 (16%)
Query: 150 VPEGGSAKLVCKAK---GYPTPKITWRREDNKEIIV-------------RSNPPSSQKVF 193
G L + P +++W + E V
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 194 SVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
S + L +T S G Y C G V+K+ L V
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGE-TEVTKQEHLSVV 102
Score = 31.2 bits (70), Expect = 0.22
Identities = 12/109 (11%), Positives = 18/109 (16%), Gaps = 32/109 (29%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
E TC V FP V W
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTV------------------NA----FPHP----HVQW 138
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
+ + N + D + S+ + C
Sbjct: 139 LMPEGVEPAPTAA-----NGGVMK-EKDGSLSVAVDLSLPKPWHLPVTC 181
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 123 bits (310), Expect = 1e-33
Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 34/194 (17%)
Query: 52 GGSIVFP---TDSSAMKVAWIKADTKAVLAIHEHVIT-------NNARLSVTHNDANTWT 101
G ++ + +++ W ++ +L +T + A + D +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
L I++++ ED Y+C+V Q+ + D + +G S L +
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTH---------LLQGQSLTLTLE 119
Query: 162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
+ +P + R K I + LS++++ + G + C
Sbjct: 120 SPPGSSPSVQCRSPRGKNI--------------QGGKTLSVSQLELQDSGTWTCTVLQNQ 165
Query: 222 PPTVSKRLMLHVHC 235
V ++ + V
Sbjct: 166 -KKVEFKIDIVVLA 178
Score = 64.8 bits (157), Expect = 2e-12
Identities = 36/230 (15%), Positives = 66/230 (28%), Gaps = 46/230 (20%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
+ V F+ V +G F+ + T + G + + +
Sbjct: 174 IVVLAFQK----ASSIVYKKEGEQVEFSFPLA----------FTVEKLTGSGELWWQAER 219
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-N 120
++ +WI D K + V T + +L + TL + G +
Sbjct: 220 ASSSKSWITFDLKNKEVSVKRV-TQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA 278
Query: 121 TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWR-REDNKE 179
Q L V M L C+ G +PK+ + +NKE
Sbjct: 279 KTGKLHQEVNLVV---------------MRATQLQKNLTCEVWGPTSPKLMLSLKLENKE 323
Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL 229
V S+ V E G +QC+ ++ + +
Sbjct: 324 AKV--------------SKREKAVWVLNPEAGMWQCLLSDSGQVLLESNI 359
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 111 bits (280), Expect = 8e-31
Identities = 49/232 (21%), Positives = 82/232 (35%), Gaps = 53/232 (22%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
F + QG DA C V + P + V+W
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRV------------------SS----SPAPA----VSW 36
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+ + V I ++ R ++ N+ L I ++ + D G Y C+ ++
Sbjct: 37 LY-HNEEVTTISDN------RFAMLANN----NLQILNINKSDEGIYRCEG-RVEARGEI 84
Query: 129 AF----LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS 184
F + V +PP IS + S + G C+A G P P I+W R + K I
Sbjct: 85 DFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLI---- 139
Query: 185 NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
+ + + + L++ + S+ G Y C A N G K+ L V
Sbjct: 140 -EENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG---EDEKQAFLQVF 187
Score = 40.5 bits (95), Expect = 1e-04
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 41/128 (32%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
N T +G + F+C +G P + ++
Sbjct: 98 AISMPQKSFNATAERGEEMTFSCRA------------------SG----SPEPA----IS 131
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MT 125
W + +I N + + ++ L +R++ D G Y+C+ TN
Sbjct: 132 WFRNG---------KLIEENEKYILKGSNT---ELTVRNIINSDGGPYVCRA-TNKAGED 178
Query: 126 KQMAFLEV 133
++ AFL+V
Sbjct: 179 EKQAFLQV 186
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 109 bits (273), Expect = 8e-30
Identities = 40/230 (17%), Positives = 67/230 (29%), Gaps = 44/230 (19%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
E F+ N+T A+G C + G +V
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQG-------------------------EPPEVH 36
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--- 124
W++ D + + + L I S++ D G Y C V
Sbjct: 37 WLR-DGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLV-FLGHQTF 94
Query: 125 TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVR 183
Q ++ + P E D V L C+A+G P P + W ++
Sbjct: 95 VSQPGYVGLEGLPYFLEEPE--DRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP 152
Query: 184 SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ P SL ++ ++ C A N T S+ + V
Sbjct: 153 GHGPQ-----------RSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITV 191
Score = 62.2 bits (151), Expect = 4e-12
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 147 DMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEI------IVRSNPPSSQKVFSVESEV 199
++ G + L C+ + P++ W R D + + + ++ +
Sbjct: 11 NITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQILELADSTQTQVPLGEDEQDDWIVVSQ 69
Query: 200 LSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
L +T + S+ G YQC+ G VS+ + +
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE 104
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 110 bits (276), Expect = 3e-29
Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 40/221 (18%)
Query: 21 AQGRDA-IFTCVVNNLGGHRVSSSVT--------------DTHVNTGGSIVFPTDSSAM- 64
A DA I+ C + G ++V G S+
Sbjct: 67 ANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSP 126
Query: 65 --KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122
V+W+ + E ++ R ++ N+ L I ++ + D G Y C+
Sbjct: 127 APAVSWLYHN-------EEVTTISDNRFAMLANN----NLQILNINKSDEGIYRCEG-RV 174
Query: 123 P----MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
+ + + V +PP IS + S + G C+A G P P I+W R + K
Sbjct: 175 EARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGK 233
Query: 179 EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
I + + + + L++ + S+ G Y C A N
Sbjct: 234 LI-----EENEKYILKGSNTELTVRNIINSDGGPYVCRATN 269
Score = 104 bits (261), Expect = 4e-27
Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 47/228 (20%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
L V ++ G FTC + W
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAI---------------------------GEPESIDW 37
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-- 126
+ I + R+ V + L I + ED G Y CQ T+ +
Sbjct: 38 YNPQGE--------KIISTQRVVVQKEGVRS-RLTIYNANIEDAGIYRCQA-TDAKGQTQ 87
Query: 127 -QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
LE+ + +G A++VC+ P P ++W N+E+
Sbjct: 88 EATVVLEIYQKLTFREVVS--PQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEV----T 140
Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
S + + + L + + +S+ G Y+C + R ++ +
Sbjct: 141 TISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188
Score = 64.8 bits (158), Expect = 1e-12
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 18/110 (16%)
Query: 128 MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPP 187
MA L+V I + + G S C A G P I W ++I
Sbjct: 2 MALLQVTISLS--------KVELSVGESKFFTCTAIGEPES-IDWYNPQGEKI------I 46
Query: 188 SSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
S+Q+V + L++ + G Y+C A + T ++L ++
Sbjct: 47 STQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 96
Score = 46.7 bits (111), Expect = 2e-06
Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 41/134 (30%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
N T +G + F+C +G P ++
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRA------------------SG----SPE----PAIS 227
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MT 125
W + +I N + + ++ L +R++ D G Y+C+ TN
Sbjct: 228 WFRNG---------KLIEENEKYILKGSNT---ELTVRNIINSDGGPYVCRA-TNKAGED 274
Query: 126 KQMAFLEVVIPPDI 139
++ AFL+V +
Sbjct: 275 EKQAFLQVFVQHHH 288
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 113 bits (284), Expect = 7e-29
Identities = 45/226 (19%), Positives = 76/226 (33%), Gaps = 32/226 (14%)
Query: 29 TCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVFPTDSSA----MKVAWI 69
TCV N G+ S+ + G + + + W
Sbjct: 596 TCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWT 655
Query: 70 KADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ-VNTNPMTKQM 128
I+ + ++ + L I +V G + C N +
Sbjct: 656 LDGQ---------AISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT 706
Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
L V +PP E T D +G AK+ CKA G+P P++TW++ +
Sbjct: 707 TPLNVYVPPRWILEPT--DKAFAQGSDAKVECKADGFPKPQVTWKK-AVGDTPGEYKDLK 763
Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
VE L + + ++ G Y C A NG+ +S +M+ V
Sbjct: 764 KSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ 809
Score = 100 bits (249), Expect = 3e-24
Identities = 51/236 (21%), Positives = 76/236 (32%), Gaps = 45/236 (19%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
+ R P + T+ G CV G PT
Sbjct: 423 LGGRFDPPVIRQAFQEETMEPGPSVFLKCVA------------------GG----NPT-- 458
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
+++W D K + + + VT N LNI SV D G Y C
Sbjct: 459 --PEISWEL-DGKKIANNDRYQVGQY----VTVNGDVVSYLNITSVHANDGGLYKCIA-K 510
Query: 122 NPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
+ + + A L V P I E + G + + C GYP I W R DN+
Sbjct: 511 SKVGVAEHSAKLNVYGLPYIRQME---KKAIVAGETLIVTCPVAGYPIDSIVWER-DNRA 566
Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
+ P ++K + L + V R+ Y C+A N + L + V
Sbjct: 567 L------PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616
Score = 90.4 bits (224), Expect = 6e-21
Identities = 38/238 (15%), Positives = 69/238 (28%), Gaps = 47/238 (19%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
+ + + +G A+ C++ + V V+W
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEV-----------------------VSW 175
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRRED-RGYYMCQVNTNPMT-- 125
+ + + + + V + L+IR V ED Y C+ + +T
Sbjct: 176 HTDEEE----NYFPGAEYDGKYLVLPSG----ELHIREVGPEDGYKSYQCRT-KHRLTGE 226
Query: 126 -KQMAFLEVVI--------PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
+ A ++ P + S + L+C A+GYP P W +
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFI 286
Query: 177 NKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
R S L + + G Y C+ N V S +L V
Sbjct: 287 EG--TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV-GGESVETVLTVT 341
Score = 89.2 bits (221), Expect = 2e-20
Identities = 59/223 (26%), Positives = 86/223 (38%), Gaps = 48/223 (21%)
Query: 21 AQGRDA-IFTCVVNN-LGGHRVSSSVT------------DTHVNTGGSIVFPTDSSAM-- 64
A D+ + CVVNN +GG V + +T V+ G VF +
Sbjct: 313 AVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 372
Query: 65 -KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
V+W+K + + + + L I SV++ED+G Y C V N
Sbjct: 373 KTVSWMK---------------DGKAIGHSES-----VLRIESVKKEDKGMYQCFV-RND 411
Query: 124 MTKQMAFLEVVI-----PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
A E+ + PP I + + G S L C A G PTP+I+W D K
Sbjct: 412 RESAEASAELKLGGRFDPPVIRQAFQ--EETMEPGPSVFLKCVAGGNPTPEISWEL-DGK 468
Query: 179 EIIVRSNPPSSQKVFSVESEVLSL--TKVTRSEMGAYQCIAAN 219
+I Q V V L T V ++ G Y+CIA +
Sbjct: 469 KIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKS 511
Score = 76.9 bits (189), Expect = 2e-16
Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 17/142 (11%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI----PPDISSEETSGDMMVPEGGSAK 157
+N+ + R + + Q P E T+ + A+
Sbjct: 1 MNMPNERLKWLMLFAAVA-LIACGSQTLAANPPDADQKGPVFLKEPTN-RIDFSNSTGAE 58
Query: 158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEM------G 211
+ CKA G P P+I W R D + L +
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAV-----GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 113
Query: 212 AYQCIAANGVPPTVSKRLMLHV 233
Y C+A N +S+ + +
Sbjct: 114 VYACLARNQFGSIISRDVHVRA 135
Score = 46.5 bits (110), Expect = 4e-06
Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 37/132 (28%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P ++ + AQG DA C G FP +V W
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKA------------------DG----FPK----PQVTW 748
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
KA + + + V TL++ ++++ + GYY+C+ N +
Sbjct: 749 KKAVGD--TPGEYKDLKKSDNIRVEEG-----TLHVDNIQKTNEGYYLCEA-INGIGSGL 800
Query: 126 KQMAFLEVVIPP 137
+ + V
Sbjct: 801 SAVIMISVQAHH 812
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 109 bits (273), Expect = 1e-27
Identities = 35/243 (14%), Positives = 67/243 (27%), Gaps = 31/243 (12%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVT------------DTHVNTGGSI 55
E + E + + C N G + T + G +
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPL 245
Query: 56 VF----PTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRRED 111
+ + W + + E + S + SV R D
Sbjct: 246 WIRCKAVHVNHGFGLTWELENKA----LEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301
Query: 112 RGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171
GYY C + ++ A + +V I++ +S D + + + K YP + T
Sbjct: 302 TGYYTCSS-SKHPSQS-ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359
Query: 172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231
W ++ +S + + G Y A N +K L
Sbjct: 360 WTFSR--------KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD-AQFTKMFTL 410
Query: 232 HVH 234
++
Sbjct: 411 NIR 413
Score = 87.8 bits (217), Expect = 3e-20
Identities = 33/238 (13%), Positives = 70/238 (29%), Gaps = 49/238 (20%)
Query: 21 AQGRDA-IFTCVVNNLGGH------------RVSSSVTDTHVNTGGSIVFPTDSSAM--- 64
D +TC + ++S D ++ F A
Sbjct: 297 VARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI 356
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNP 123
+ W + + N ++++ + G Y+ N +
Sbjct: 357 RCTWTFSR---------KSFPCEQKGLD-----NGYSISKFCNHKHQPGEYIFHAENDDA 402
Query: 124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
+M L + P + + E +++ C + GYP P TW++ +K
Sbjct: 403 QFTKMFTLNIRRKPQV----------LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCT 452
Query: 184 SNPPS-------SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
++KVF +L + +C A N + T + ++L+
Sbjct: 453 EEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSL-GTSCETILLNSP 509
Score = 79.4 bits (195), Expect = 3e-17
Identities = 29/218 (13%), Positives = 57/218 (26%), Gaps = 33/218 (15%)
Query: 29 TCVVNNLGGHRVSSSV---------TDTHVNTGGSIVFP---TDSSAMKVAWIKADTKAV 76
V + + V+ SI + W+ +
Sbjct: 31 PMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSS-- 88
Query: 77 LAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP 136
+ + + + + I + G Y+ + + T V I
Sbjct: 89 -------LNCQPHFDLQNRGVVS--MVILKMTETQAGEYLLFI-QSEATNYTILFTVSIR 138
Query: 137 PDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE 196
+ E A LVC ++ P P + W D+ S S V E
Sbjct: 139 NTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDS---QGESCKEESPAVVKKE 194
Query: 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+VL +C A N + ++ + ++
Sbjct: 195 EKVLH-----ELFGTDIRCCARNELGRECTRLFTIDLN 227
Score = 64.7 bits (157), Expect = 2e-12
Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 10/118 (8%)
Query: 104 IRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163
Y V+ +P A L + + V S L
Sbjct: 19 NNDSSVGKSSSYPM-VSESPEDLGCA-LRPQSSGTVYEAAA---VEVDVSASITLQVLVD 73
Query: 164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
W + + N + + + + K+T ++ G Y +
Sbjct: 74 APGNISCLWVFKHS-----SLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 101 bits (252), Expect = 1e-27
Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 27/135 (20%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
E +T+ +G+ CV + + W
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNS--------------------------SLQW 35
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+ + ++E+ + N++ + H+ AN ++ + +V +D G Y C ++ ++ +
Sbjct: 36 LTPSGF-TIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKE 94
Query: 129 AFLEVVIPPDISSEE 143
+ V+
Sbjct: 95 VKVIVLATMKGEFCR 109
Score = 57.3 bits (138), Expect = 6e-11
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEV-----LS 201
+ V EG + L C + W I + P + + ++
Sbjct: 10 TITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSIT 69
Query: 202 LTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ VT + G Y+C+ + +K + + V
Sbjct: 70 VPNVTLQDEGVYKCLHYSD--SVSTKEVKVIV 99
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 103 bits (258), Expect = 1e-27
Identities = 49/229 (21%), Positives = 80/229 (34%), Gaps = 50/229 (21%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P PLE V A F C V + P ++W
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVE---SY-------------------PQPE----ISW 41
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
+ + + R S+ N L I SV D G Y C N +
Sbjct: 42 TRNK--------ILIKLFDTRYSIRENGQ---LLTILSVEDSDDGIYCCTA-NNGVGGAV 89
Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
+ L+V + P I+ ++ + EG A L C G P P ++W + + +
Sbjct: 90 ESCGALQVKMKPKITRPPI--NVKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSAL----- 141
Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ ++ +ES L + V + + G Y+C+A N + SK + L V
Sbjct: 142 -RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 70.9 bits (174), Expect = 3e-15
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
++ P I++ + A +C + YP P+I+W R + I ++
Sbjct: 3 KLPKAPVITTPLE--TVDALVEEVATFMCAVESYPQPEISWTR-NKILI----KLFDTRY 55
Query: 192 VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
++L++ V S+ G Y C A NGV V L V
Sbjct: 56 SIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK 98
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 102 bits (257), Expect = 2e-27
Identities = 46/219 (21%), Positives = 81/219 (36%), Gaps = 47/219 (21%)
Query: 9 PDFLYPLE--NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKV 66
P P + N T +G + F+C + G P +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRAS---GSPE-----------------PA------I 36
Query: 67 AWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMT 125
+W + +I N + + ++ L +R++ D G Y+C+ N
Sbjct: 37 SWFRNG---------KLIEENEKYILKGSN---TELTVRNIINSDGGPYVCRATNKAGED 84
Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
++ AFL+V + P I + + E G LVC A+G P P+ITW+R + +
Sbjct: 85 EKQAFLQVFVQPHIIQLK---NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGD 141
Query: 186 PPSSQKVFSVESEV---LSLTKVTRSEMGAYQCIAANGV 221
++ L + V S+ G Y C AA+ +
Sbjct: 142 KSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Score = 77.9 bits (192), Expect = 6e-18
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
P IS + S + G C+A G P P I+W R + K I + + +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLI-----EENEKYILKG 55
Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ L++ + S+ G Y C A N K+ L V
Sbjct: 56 SNTELTVRNIINSDGGPYVCRATNKA-GEDEKQAFLQVF 93
Score = 43.3 bits (102), Expect = 2e-05
Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 33/127 (25%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P + +N T + C G P ++ W
Sbjct: 96 PHIIQL-KNETTYENGQVTLVCDA------------------EG----EPI----PEITW 128
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTK 126
+A E + + R+ V ++ +L+I+ V+ D G Y C+ + +
Sbjct: 129 KRAVD--GFTFTEGDKSLDGRIEVKGQHGSS-SLHIKDVKLSDSGRYDCEA-ASRIGGHQ 184
Query: 127 QMAFLEV 133
+ +L++
Sbjct: 185 KSMYLDI 191
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 102 bits (257), Expect = 2e-27
Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 48/230 (20%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
L V ++ G FTC G P +
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAI---GE-------------------PESI----DWY 36
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
K I + R+ V + L I + ED G Y CQ T+
Sbjct: 37 NPQGEK---------IISTQRVVV-QKEGVRSRLTIYNANIEDAGIYRCQA-TDAKGQTQ 85
Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
+ LE+ + +G A++VC+ P P ++W N+E+ S+
Sbjct: 86 EATVVLEIYQKLTFREVVS--PQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISD 142
Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV-SKRLMLHVH 234
+ + + L + + +S+ G Y+C + + +++ V+
Sbjct: 143 N----RFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 188
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 101 bits (251), Expect = 3e-27
Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 27/132 (20%)
Query: 7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKV 66
+ D + T+ G + C V + +
Sbjct: 37 SQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSL-------------------------- 70
Query: 67 AWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK 126
W + L E + R+ + + + +++I +V D G Y C + T P+
Sbjct: 71 QWSNPAQQ-TLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRT 129
Query: 127 QMAFLEVVIPPD 138
+ + V+ P
Sbjct: 130 AKSLVTVLGIPQ 141
Score = 44.4 bits (104), Expect = 4e-06
Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 7/107 (6%)
Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
+ S+ + D V GG+ L C+ K + + W + +
Sbjct: 32 ADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDN 91
Query: 192 VFSVESEV-----LSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ + +S++ V ++ G Y C P + + ++ V
Sbjct: 92 RIQLVTSTPHELSISISNVALADEGEYTCSIFTM--PVRTAKSLVTV 136
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 105 bits (263), Expect = 3e-27
Identities = 43/218 (19%), Positives = 62/218 (28%), Gaps = 47/218 (21%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F L N+ + +A C V T V W
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKV--------------------------TGHPKPIVKW 38
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQ 127
+ + +I + + + L I SV +D Y + N
Sbjct: 39 YRQG--------KEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90
Query: 128 MAFLEVVIPPDIS---SEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS 184
A LEV +P I + E G + G + G P P ITW++ I
Sbjct: 91 TASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLI---- 145
Query: 185 NPPSSQKVFSVESEVLSLT---KVTRSEMGAYQCIAAN 219
+ V SL V R + G Y A N
Sbjct: 146 -DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Score = 62.9 bits (153), Expect = 6e-12
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
+ P E ++ V +A LVCK G+P P + W R KEII ++
Sbjct: 3 MAPHFKEELR--NLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIA---DGLKYRIQE 56
Query: 195 VESEVLSLT--KVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ L VT + YQ A N +VS L V
Sbjct: 57 FKGGYHQLIIASVTDDDATVYQVRATNQG-GSVSGTASLEVE 97
Score = 48.2 bits (115), Expect = 6e-07
Identities = 23/139 (16%), Positives = 37/139 (26%), Gaps = 38/139 (27%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
VP + P L + V +G +
Sbjct: 98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPF--------------------------SGK 131
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
+ W K +I NN V + T + V R+D G+Y+
Sbjct: 132 PDPVITWQKGQ---------DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA-K 181
Query: 122 NPM--TKQMAFLEVVIPPD 138
N ++ L+V PD
Sbjct: 182 NRFGIDQKTVELDVADVPD 200
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 105 bits (262), Expect = 5e-27
Identities = 36/232 (15%), Positives = 65/232 (28%), Gaps = 23/232 (9%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
+ +++ G D + C N + VT G + +M V
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV-- 72
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+ R+ T+ + + ED G Y+C+ T P +
Sbjct: 73 ------------SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE 120
Query: 129 AF--LEVVIPPDISSEETSGDMMV---PEGGSAKLVCK-AKGYPTPKITWRREDNKEIIV 182
+ L V+ P E T + + C A G P ++W
Sbjct: 121 SQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLK-GEAE 179
Query: 183 RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ +V S L + + CI + + L L+V
Sbjct: 180 YQEIRNPNGTVTVIS-RYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNVQ 229
Score = 78.3 bits (192), Expect = 3e-17
Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 13/154 (8%)
Query: 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISS 141
+ + R + C V K+ L V P+++
Sbjct: 177 EAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTI 236
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVL 200
E G+ + KL CKA P + W + + V + +
Sbjct: 237 EGFDGNW-YLQRMDVKLTCKADANPPATEYHWTTLNG---------SLPKGVEAQNRTLF 286
Query: 201 SLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ S G Y C A N + T S ++ +++
Sbjct: 287 FKGPINYSLAGTYICEATNPI-GTRSGQVEVNIT 319
Score = 39.0 bits (90), Expect = 7e-04
Identities = 18/138 (13%), Positives = 31/138 (22%), Gaps = 38/138 (27%)
Query: 28 FTCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVFP--TDSS--AMKVAW 68
C+VN R S+T + D++ A + W
Sbjct: 209 LACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHW 267
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
N L N + G Y+C+ TNP+
Sbjct: 268 TT---------------LNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEA-TNPIGTRS 311
Query: 127 QMAFLEVVIPPDISSEET 144
+ + +
Sbjct: 312 GQVEVNITEAAALEHHHH 329
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 105 bits (263), Expect = 9e-27
Identities = 38/215 (17%), Positives = 73/215 (33%), Gaps = 35/215 (16%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
+P + +N T + C G P ++
Sbjct: 1 QPHIIQL-KNETTYENGQVTLVCDA------------------EG----EPIP----EIT 33
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTK 126
W +A E + + R+ V ++ +L+I+ V+ D G Y C+ + +
Sbjct: 34 WKRAVDG--FTFTEGDKSLDGRIEVKGQHGSS-SLHIKDVKLSDSGRYDCEAASRIGGHQ 90
Query: 127 QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP 186
+ +L++ P S +T EG + C K P I WRR D + ++
Sbjct: 91 KSMYLDIEYAPKFISNQT--IYYSWEGNPINISCDVKSNPPASIHWRR-DKLVLPAKNTT 147
Query: 187 PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
+ +L + + ++ G Y C A N +
Sbjct: 148 NLKTYSTGRKM-ILEIAPTSDNDFGRYNCTATNHI 181
Score = 67.9 bits (166), Expect = 1e-13
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLT 203
+ E G LVC A+G P P+ITW+R + + ++ L +
Sbjct: 9 NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIK 68
Query: 204 KVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
V S+ G Y C AA+ + K + L +
Sbjct: 69 DVKLSDSGRYDCEAASRI-GGHQKSMYLDIE 98
Score = 40.9 bits (96), Expect = 2e-04
Identities = 19/132 (14%), Positives = 27/132 (20%), Gaps = 37/132 (28%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F+ +G +C V + + W
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDV------------------KS--------NPPASIHW 134
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
+ N L L I D G Y C TN +
Sbjct: 135 RRDK-------LVLPAKNTTNLKTYSTGRKM-ILEIAPTSDNDFGRYNCTA-TNHIGTRF 185
Query: 127 QMAFLEVVIPPD 138
Q L + P
Sbjct: 186 QEYILALADVPS 197
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 102 bits (257), Expect = 2e-26
Identities = 49/224 (21%), Positives = 70/224 (31%), Gaps = 51/224 (22%)
Query: 1 MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTD 60
M P P F +V +A G F C V G
Sbjct: 3 MAP-----PFFDLKPVSVDLALGESGTFKCHVT---GT---------------------- 32
Query: 61 SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV- 119
+ +K+ W K + I +T + TL + V + D G Y C
Sbjct: 33 -APIKITWAKDN---------REIRPGGNYKMTLVENTA-TLTVLKVTKGDAGQYTCYAS 81
Query: 120 NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
N A L V PP + +V + + CK G P K+ W + D E
Sbjct: 82 NVAGKDSCSAQLGVQEPPRFIKKLEP-SRIVKQDEHTRYECKIGGSPEIKVLWYK-DETE 139
Query: 180 IIVRSNPPSSQKVFSVESE--VLSLTKVTRSEMGAYQCIAANGV 221
I SS+ S VL + ++ + G Y C A N
Sbjct: 140 I-----QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Score = 98.7 bits (246), Expect = 6e-25
Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 48/215 (22%)
Query: 9 PDFLYPLENV-TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
P F+ LE + Q + C + G P +KV
Sbjct: 99 PRFIKKLEPSRIVKQDEHTRYECKI------------------GG----SPE----IKVL 132
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ-VNTNPMTK 126
W K +T I +++ + + L + ++ ED G Y C+ N
Sbjct: 133 WYKDET---------EIQESSKFRM-SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 182
Query: 127 QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP 186
L+V PP + + +G L C+ +G P +++W + D +E+
Sbjct: 183 SSTSLKVKEPPVFRKKPH--PVETLKGADVHLECELQGTPPFQVSWHK-DKREL-----R 234
Query: 187 PSSQKVFSVESEVLSLT--KVTRSEMGAYQCIAAN 219
+ E+ + S+ V +++G YQC A+N
Sbjct: 235 SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASN 269
Score = 67.8 bits (166), Expect = 9e-14
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
PP + + + G S C G KITW + DN+EI + +
Sbjct: 5 PPFFDLK--PVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREI---RPGGNYKMTLVE 58
Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ L++ KVT+ + G Y C A+N S L V
Sbjct: 59 NTATLTVLKVTKGDAGQYTCYASNVA-GKDSCSAQLGVQ 96
Score = 48.2 bits (115), Expect = 6e-07
Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 39/127 (30%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F V +G D C + G P +V+W
Sbjct: 193 PVFRKKPHPVETLKGADVHLECEL------------------QG----TPP----FQVSW 226
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
K + + + + + +++I +V D G Y C+ +N +
Sbjct: 227 HKDK---------RELRSGKKYKIMSEN-FLTSIHILNVDSADIGEYQCKA-SNDVGSYT 275
Query: 127 QMAFLEV 133
+ + +
Sbjct: 276 CVGSITL 282
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 100 bits (251), Expect = 2e-26
Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 47/236 (19%)
Query: 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
P + + A+G A C + + S P D + + W+ + +
Sbjct: 6 PEQRIEKAKGETAYLPC--------KFTLS--------------PEDQGPLDIEWLISPS 43
Query: 74 KAVLAIHEHVITNNA------------RLSVTHND--ANTWTLNIRSVRREDRGYYMCQV 119
+ ++ + R+ T ND + ++N+ +++ D G Y C+V
Sbjct: 44 DNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKV 103
Query: 120 NTNPMTKQ-MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDN 177
P L V++ P + D G KL C+ K G + W++ +
Sbjct: 104 KKAPGVANKKFLLTVLVKPSGT--RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD 161
Query: 178 KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
S + + + S V+S+ + G Y C N V + L L V
Sbjct: 162 ------SQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRV-GSDQCMLRLDV 210
Score = 35.4 bits (81), Expect = 0.008
Identities = 17/130 (13%), Positives = 31/130 (23%), Gaps = 39/130 (30%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P + + G D C G ++ W
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEP------------------KEG---SLP----LQFEW 156
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
K + + +++++ E G Y C V N +
Sbjct: 157 QKLSDSQTMPTPWLAEMTSP------------VISVKNASSEYSGTYSCTV-QNRVGSDQ 203
Query: 129 AFLEV-VIPP 137
L + V+PP
Sbjct: 204 CMLRLDVVPP 213
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 105 bits (263), Expect = 3e-26
Identities = 51/240 (21%), Positives = 80/240 (33%), Gaps = 53/240 (22%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
+ R P F L++V G F C +N G
Sbjct: 95 IKERKLPPSFARKLKDVHETLGFPVAFECRIN---GS-------------------EPLQ 132
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
V+W K ++ ++A L + N TL I + G Y C +
Sbjct: 133 ----VSWYK---------DGELLKDDANLQTSFIH-NVATLQILQTDQSHVGQYNCSA-S 177
Query: 122 NPMTKQMAFLEVVI-----PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
NP+ + ++ + PP + + + G S C G KITW + D
Sbjct: 178 NPLGTASSSAKLTLSEHEVPPFF--DLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-D 234
Query: 177 NKEIIVRSNPPSSQKVFSVESE--VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
N+EI P ++ L++ KVT+ + G Y C A+N S L V
Sbjct: 235 NREI-----RPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA-GKDSCSAQLGVQ 288
Score = 103 bits (258), Expect = 1e-25
Identities = 35/217 (16%), Positives = 65/217 (29%), Gaps = 48/217 (22%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F V +G D C + G P +V+W
Sbjct: 385 PVFRKKPHPVETLKGADVHLECEL------------------QG----TPP----FQVSW 418
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
K + + + + + +++I +V D G Y C+ +N +
Sbjct: 419 HKDK---------RELRSGKKYKIMSEN-FLTSIHILNVDSADIGEYQCKA-SNDVGSDT 467
Query: 127 QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP 186
+ + + PP + D+ G +L +G + W + D EI+
Sbjct: 468 CVGSITLKAPPRFVKK--LSDISTVVGEEVQLQATIEGAEPISVAWFK-DKGEIV----R 520
Query: 187 PSSQKVFSVESEVLSLT--KVTRSEMGAYQCIAANGV 221
S S + +L + + G Y C N
Sbjct: 521 ESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEA 557
Score = 99.1 bits (247), Expect = 5e-24
Identities = 45/219 (20%), Positives = 67/219 (30%), Gaps = 42/219 (19%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
+ P F +V +A G F C V TG
Sbjct: 191 LSEHEVPPFFDLKPVSVDLALGESGTFKCHV------------------TG----TAPIK 228
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-N 120
+ W K + + I +T + TL + V + D G Y C N
Sbjct: 229 ----ITWAKDNRE---------IRPGGNYKMTLVENTA-TLTVLKVTKGDAGQYTCYASN 274
Query: 121 TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
A L V PP ++ +V + + CK G P K+ W + D EI
Sbjct: 275 VAGKDSCSAQLGVQEPPRFI-KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEI 332
Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ F VL + ++ + G Y C A N
Sbjct: 333 ---QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368
Score = 91.0 bits (226), Expect = 3e-21
Identities = 45/218 (20%), Positives = 75/218 (34%), Gaps = 52/218 (23%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F+ PLE+V A G C V G P +++AW
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKV------------------DG----TPE----IRIAW 39
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
K TK + + + + N +L I V D G Y C+ N +
Sbjct: 40 YKEHTK---------LRSAPAYKMQFKN-NVASLVINKVDHSDVGEYTCKA-ENSVGAVA 88
Query: 129 AFLEVVI-----PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
+ +VI PP + + D+ G C+ G +++W + D + +
Sbjct: 89 SSAVLVIKERKLPPSFARKLK--DVHETLGFPVAFECRINGSEPLQVSWYK-DGELL--- 142
Query: 184 SNPPSSQKVFSVESEV--LSLTKVTRSEMGAYQCIAAN 219
+ S V L + + +S +G Y C A+N
Sbjct: 143 --KDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178
Score = 61.0 bits (148), Expect = 4e-11
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
PP E + G L CK G P +I W + ++ ++ + P+ + F
Sbjct: 5 PPYF--IEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYK-EHTKL---RSAPAYKMQFKN 58
Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN 219
L + KV S++G Y C A N
Sbjct: 59 NVASLVINKVDHSDVGEYTCKAEN 82
Score = 45.2 bits (107), Expect = 1e-05
Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 38/128 (29%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F+ L +++ G + + + + VAW
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATI--------------------------EGAEPISVAW 511
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
K ++ + + +++++ N TL + G Y CQ+ N +
Sbjct: 512 FKDK--------GEIVRESDNIWISYSE-NIATLQFSRAEPANAGKYTCQI-KNEAGTQE 561
Query: 127 QMAFLEVV 134
A L V+
Sbjct: 562 CFATLSVL 569
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 99.8 bits (249), Expect = 3e-26
Identities = 47/218 (21%), Positives = 73/218 (33%), Gaps = 50/218 (22%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F PL++V + +G A F + +G FP +V+W
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHI------------------SG----FPV----PEVSW 39
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
+ D + + + L I +V + + G Y + TN
Sbjct: 40 FR-DGQVISTSTLPGVQ-------ISFSDGRAKLTIPAVTKANSGRYSLKA-TNGSGQAT 90
Query: 127 QMAFLEVV---IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
A L V PP+ M V +G +L + G PTP + + R D EI
Sbjct: 91 STAELLVKAETAPPNFVQRLQ--SMTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEI--- 144
Query: 184 SNPPSSQKVFSVESEVLSLT--KVTRSEMGAYQCIAAN 219
S S E ++ SL + + G Y A N
Sbjct: 145 --QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Score = 68.6 bits (168), Expect = 2e-14
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
P + ++V EG +A G+P P+++W R+ I S P Q
Sbjct: 2 TTQAPTFTQPLQ--SVVVLEGSTATFEAHISGFPVPEVSWFRDGQV--ISTSTLPGVQIS 57
Query: 193 FSVESEVLSLTKVTRSEMGAYQCIAANGV 221
FS L++ VT++ G Y A NG
Sbjct: 58 FSDGRAKLTIPAVTKANSGRYSLKATNGS 86
Score = 49.3 bits (118), Expect = 1e-07
Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 37/126 (29%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P+F+ L+++T+ QG V TG PT V +
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRV------------------TG----IPT----PVVKF 137
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ-VNTNPMTKQ 127
+ I ++ ++ + + ++L I ED G Y N+
Sbjct: 138 YRDG---------AEIQSSLDFQISQ-EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS 187
Query: 128 MAFLEV 133
A L V
Sbjct: 188 TAELLV 193
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 102 bits (255), Expect = 3e-26
Identities = 32/236 (13%), Positives = 61/236 (25%), Gaps = 36/236 (15%)
Query: 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK 70
+ V G C + + ++ W +
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPN---------------------MEVTHVSQLTWAR 41
Query: 71 ADTKAVLAI----HEHVITNNARLSVTHNDANT----WTLNIRSVRREDRGYYMCQVNTN 122
+A+ + + RL +L + +R ED G Y C T
Sbjct: 42 HGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTF 101
Query: 123 PMTK--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKE 179
P +L V+ P + + + C + G P +ITW +
Sbjct: 102 PQGSRSVDIWLRVLAKPQNT--AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGM 159
Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVSKRLMLHVH 234
P +V S + L ++ + C + + L V+
Sbjct: 160 PNTSQVPGFLSGTVTVTS-LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY 214
Score = 77.8 bits (191), Expect = 3e-17
Identities = 31/232 (13%), Positives = 61/232 (26%), Gaps = 43/232 (18%)
Query: 25 DAIFTCVVNNLGGHRVSSSVT--------------DTHVNTGGSIVFPTDSS----AMKV 66
+ +TC+ S + + + S+ ++
Sbjct: 91 EGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQI 150
Query: 67 AWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK 126
W D + + + ++VT + + D C+V + +
Sbjct: 151 TWHS-DLGGMPNTSQVPGFLSGTVTVTS------LWILVPSSQVDGKNVTCKV-EHESFE 202
Query: 127 QM----AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEII 181
+ L V PP++S + A L C A+ P P W
Sbjct: 203 KPQLLTVNLTVYYPPEVSISGYD-NNWYLGQNEATLTCDARSNPEPTGYNWSTTM----- 256
Query: 182 VRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
PP + + L + V + C N + L + V
Sbjct: 257 -GPLPPFAV----AQGAQLLIRPVDKPINTTLICNVTNAL-GARQAELTVQV 302
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 99 bits (249), Expect = 3e-26
Identities = 45/243 (18%), Positives = 78/243 (32%), Gaps = 55/243 (22%)
Query: 3 PVRGF-EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
P G+ +P V + +G+ + C
Sbjct: 2 PGSGYLDPFPPEERPEVRVKEGKGMVLLCDPP--YHF----------------------P 37
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
+ W+ + IT + R V+ + N L I +V D+G Y C V +
Sbjct: 38 DDLSYRWLLNE-------FPVFITMDKRRFVSQTNGN---LYIANVEASDKGNYSCFV-S 86
Query: 122 NPMT---KQMAFLEVVIPPDISSEETS-------GDMMVPEGGSAKLVCKAKGYPTPKIT 171
+P F+ ++ P+ +++ D+ G + L C A G P P I
Sbjct: 87 SPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIR 146
Query: 172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231
WR+ P S S VL + + + G Y+C A N + +
Sbjct: 147 WRKVL--------EPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIR-GKDKHQARI 197
Query: 232 HVH 234
+V
Sbjct: 198 YVQ 200
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 103 bits (259), Expect = 4e-26
Identities = 45/220 (20%), Positives = 73/220 (33%), Gaps = 48/220 (21%)
Query: 3 PVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS 62
P + FL NV +G+DA+ C V+ G P+
Sbjct: 216 PGLHRQLYFLQRPSNVIAIEGKDAVLECCVS-------------------GYPP-PS--- 252
Query: 63 AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NT 121
W++ + L ++ + + L I +V +D G Y C V
Sbjct: 253 ---FTWLRGEEVIQLRSKKYSLLGGS------------NLLISNVTDDDSGTYTCVVTYK 297
Query: 122 NPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEII 181
N A L V++PP + ++ E + C G P P + W + +
Sbjct: 298 NENISASAELTVLVPPWFLNH--PSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDV--- 352
Query: 182 VRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
S V L + V +S+ G YQC+A N
Sbjct: 353 ----VIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEA 388
Score = 98.0 bits (244), Expect = 5e-24
Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 42/230 (18%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
F+ + +G + + C P + W
Sbjct: 22 LHFVSEPSDAVTMRGGNVLLNCSAE-------------------SDRGVPV------IKW 56
Query: 69 IKADTKAVLAIHEHV-ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP---M 124
K L + + N L + + + + D G Y C+ + +
Sbjct: 57 KKDGLILALGMDDRKQQLPNGSLLIQN-------ILHSRHHKPDEGLYQCEASLGDSGSI 109
Query: 125 TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS 184
+ A + V P S+ + G + L C+ G P P I W++ + +++ +
Sbjct: 110 ISRTAKVMVAGPLRFLSQTE--SITAFMGDTVLLKCEVIGDPMPTIHWQK-NQQDL---N 163
Query: 185 NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
P +V + S L ++++ + G Y+C A N + +
Sbjct: 164 PIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
Score = 48.3 bits (115), Expect = 7e-07
Identities = 26/130 (20%), Positives = 36/130 (27%), Gaps = 42/130 (32%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P FL N+ + D F C V +G P V W
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAV------------------SG----KPV----PTVNW 346
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
+K V+ + + L I V + D G+Y C N +
Sbjct: 347 MKNG---------DVVIPSDYFQIVGGS----NLRILGVVKSDEGFYQCVA-ENEAGNAQ 392
Query: 127 QMAFLEVVIP 136
A L V P
Sbjct: 393 SSAQLIVPKP 402
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 101 bits (253), Expect = 2e-25
Identities = 43/230 (18%), Positives = 67/230 (29%), Gaps = 49/230 (21%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
EP Y +++ G + C+ P
Sbjct: 212 EPVPQYVSKDMMAKAGDVTMIYCMY------------------GS----NPMGY----PN 245
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK- 126
+ K + V N HN + L ++ ED G Y C+V N + K
Sbjct: 246 YFKNG--------KDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEV-DNGVGKP 296
Query: 127 --QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS 184
L VV P + ++V +G + CK G P P + W
Sbjct: 297 QKHSLKLTVVSAPKYEQKPEK-VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK------- 348
Query: 185 NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
P S +V L + V + G Y C A N ++ V+
Sbjct: 349 --PLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEH-GDKYFETLVQVN 395
Score = 93.1 bits (231), Expect = 2e-22
Identities = 34/237 (14%), Positives = 61/237 (25%), Gaps = 35/237 (14%)
Query: 27 IFTCVVNNLGGHRVSSSVT--------------DTHVNTGGSIVF----PTDSSAMKVAW 68
+ C G S ++ + G P + W
Sbjct: 76 HYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITW 135
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--- 125
K + + V + R++ + N + + D Y+C N
Sbjct: 136 KKRLSG--ADPNADVTDFDRRITAGPDG-NLYFTIVTKEDVSDIYKYVCTA-KNAAVDEE 191
Query: 126 KQMAFLEVVIPPDISSEE--------TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN 177
+ E+ +S S DMM G + C P + + +
Sbjct: 192 VVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK-NG 250
Query: 178 KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
K++ ++ + L + G Y C NGV L L V
Sbjct: 251 KDVNGNPEDRITRHNRTSGK-RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306
Score = 84.6 bits (209), Expect = 3e-19
Identities = 33/232 (14%), Positives = 63/232 (27%), Gaps = 46/232 (19%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P V + + C++ G +K +W
Sbjct: 7 PVLKDQPAEVLFRENNPTVLECII------------------EG----NDQ---GVKYSW 41
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
K H + + +L + D G+Y C P +
Sbjct: 42 KKDGKSYNWQEHNAALRKDEG-----------SLVFLRPQASDEGHYQCFA-ETPAGVAS 89
Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK-AKGYPTPKITWRREDNKEIIVRS 184
++ ++ + EG +L C YP P ITW++ +
Sbjct: 90 SRVISFRKTYLIASPAKTH--EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNAD 147
Query: 185 NPPSSQKVFSVESEVLSLTKVTR---SEMGAYQCIAANGVPPTVSKRLMLHV 233
+++ + L T VT+ S++ Y C A N + +
Sbjct: 148 VTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI 199
Score = 64.2 bits (156), Expect = 3e-12
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 8/104 (7%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSS 189
L V P + + +++ E L C +G K +W++ D K N
Sbjct: 1 LPVDKYPVLKDQ--PAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSY----NWQEH 53
Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ L + S+ G YQC A S+ +
Sbjct: 54 NAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 97
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 99.7 bits (248), Expect = 2e-25
Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 25/198 (12%)
Query: 39 RVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98
+ SV + V G ++ + V W + ++D +
Sbjct: 6 VIEPSVPELVVKPGATVTLRCVGNG-SVEWDG---------------PPSPHWTLYSDGS 49
Query: 99 TWTLNIRSVRREDRGYYMCQVNTNPMTKQM-AFLEVVIPPDISSEETSGDMMVPEGGSAK 157
+ L+ + ++ G Y C +P+ L V P + +++V E A
Sbjct: 50 SSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQ-EVVVFEDQDAL 108
Query: 158 LVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216
L C ++ R + + ++ + + YQC
Sbjct: 109 LPCLLTDPVLEAGVSLVRVRGRPL------MRHTNYSFSPWHGFTIHRAKFIQSQDYQCS 162
Query: 217 AANGVPPTVSKRLMLHVH 234
A G +S + L V
Sbjct: 163 ALMGGRKVMSISIRLKVQ 180
Score = 95.8 bits (238), Expect = 8e-24
Identities = 28/239 (11%), Positives = 71/239 (29%), Gaps = 47/239 (19%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
+ V+ + + V + + +DA+ C++ T +
Sbjct: 83 LYVKDPARPWNVLAQEVVVFEDQDALLPCLL------------------TDPVL------ 118
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
V+ ++ + ++ + + I + Y C
Sbjct: 119 -EAGVSLVRVRGRPLMRHTNYSFSPWH------------GFTIHRAKFIQSQDYQCSALM 165
Query: 122 NPMTKQMAFLEVVI------PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE 175
+ + + PP ++ +++ G +A++VC A + +
Sbjct: 166 GGRKVMSISIRLKVQKVIPGPPALTLVPA--ELVRIRGEAAQIVCSASSVDVNFDVFLQH 223
Query: 176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+N ++ + + L+L +V G Y C+A+N S + V
Sbjct: 224 NNTKLAIPQQSDFHNNRYQKVL-TLNLDQVDFQHAGNYSCVASNVQ-GKHSTSMFFRVV 280
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 102 bits (255), Expect = 3e-25
Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 37/237 (15%)
Query: 3 PVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS 62
P P + + +G + TC + S
Sbjct: 206 PAFKAVPVVSVSKASYLLREGEEFTVTCTI------------------KDVSSSV----- 242
Query: 63 AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NT 121
W + +++ L + + N TL I S R D G +MC NT
Sbjct: 243 --YSTWKRENSQTKLQEKYNSWHHG-----DFNYERQATLTISSARVNDSGVFMCYANNT 295
Query: 122 NPMTKQMAFLEVVIPPDISSE-ETSGDMMVPEGGSAKLVCKAKGYPTPK-ITWRREDNKE 179
LEVV I+ + + V +G + L+ + + +P P+ W N+
Sbjct: 296 FGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY-MNRT 354
Query: 180 IIVRSNPPSSQKVFSVESEV--LSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ + S V L LT++ +E G Y + +N + ++V+
Sbjct: 355 FTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSD-VNAAIAFNVYVN 410
Score = 93.2 bits (231), Expect = 4e-22
Identities = 40/244 (16%), Positives = 71/244 (29%), Gaps = 44/244 (18%)
Query: 21 AQGRDA-IFTCVVNNLGGH-RVSSSVT---------------DTHVNTGGSIVFPTDSSA 63
A+ D+ +F C NN G V++++ VN G ++ + A
Sbjct: 280 ARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEA 339
Query: 64 ----MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
WI + E + ++ + L++ ++ + G Y V
Sbjct: 340 FPKPEHQQWIY-MNRTFTDKWEDYPKSENESNIRYVS----ELHLTRLKGTEGGTYTFLV 394
Query: 120 -NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
N++ + V P+I + + L C A G+P P I W
Sbjct: 395 SNSDVNAAIAFNVYVNTKPEILT--------YDRLVNGMLQCVAAGFPEPTIDWYFCPGT 446
Query: 179 EIIVRSNPPSSQKVFSVESE--------VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM 230
E ++ S S+ G +C A N V S
Sbjct: 447 EQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDV-GKTSAYFN 505
Query: 231 LHVH 234
Sbjct: 506 FAFK 509
Score = 79.3 bits (195), Expect = 3e-17
Identities = 32/240 (13%), Positives = 69/240 (28%), Gaps = 36/240 (15%)
Query: 17 NVTIAQGRDA-IFTCVVNNLGGHRVSSSVTD----------THVNTGGSIVFP---TDSS 62
A+ + +TC + + + V D + + TD
Sbjct: 83 ITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE 142
Query: 63 AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR-EDRGYYMCQVNT 121
+ + + R + I+SV+R R C V+
Sbjct: 143 VTNYSLKGCQ--------GKPLPKDLRFIPDPKA----GIMIKSVKRAYHRLCLHCSVDQ 190
Query: 122 NPMTKQMAFLEVVIPPDISS----EETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRRED 176
+ + + P + + ++ EG + C K + TW+R +
Sbjct: 191 EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKR-E 249
Query: 177 NKEIIVRSNPPSSQ--KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
N + ++ S L+++ ++ G + C A N + + L V
Sbjct: 250 NSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTF-GSANVTTTLEVV 308
Score = 71.2 bits (174), Expect = 2e-14
Identities = 16/135 (11%), Positives = 37/135 (27%), Gaps = 11/135 (8%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
+ G Y C N + ++ ++ V P + + + E + C
Sbjct: 81 EWITEKAEATNTGKYTC-TNKHGLSNS-IYVFVRDPAKLFLVDR--SLYGKEDNDTLVRC 136
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE-MGAYQCIAAN 219
+ + K + P + + + V R+ C
Sbjct: 137 PLTDPEVTNYSLKGCQGKPL------PKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQ 190
Query: 220 GVPPTVSKRLMLHVH 234
+S++ +L V
Sbjct: 191 EGKSVLSEKFILKVR 205
Score = 53.5 bits (128), Expect = 1e-08
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 23/119 (19%)
Query: 108 RREDRGYYMCQV-----NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA 162
++C + ++ PP I ++ D++V G +L+C
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKS--DLIVRVGDEIRLLCTD 60
Query: 163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
G+ + W E + ++ K + G Y C +G+
Sbjct: 61 PGF----VKWTFEILD---ETNENKQNE---------WITEKAEATNTGKYTCTNKHGL 103
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 96.8 bits (241), Expect = 4e-25
Identities = 45/231 (19%), Positives = 69/231 (29%), Gaps = 54/231 (23%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
+ +T++QG+ C V G +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSV------------------EG----MEEPD----IQ 35
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--- 124
W+K V + L+++SV R D G Y CQV +
Sbjct: 36 WVKDG--------AVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV-EDGGETE 86
Query: 125 TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVR 183
Q +L V P + E D+ VP +L C+A G P P I W R K +
Sbjct: 87 ISQPVWLTVEGVPFFTVEPK--DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTK---IG 141
Query: 184 SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
PS L ++ + C A N S+ +H+
Sbjct: 142 GPAPSP----------SVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 101 bits (252), Expect = 4e-25
Identities = 36/243 (14%), Positives = 70/243 (28%), Gaps = 31/243 (12%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVT------------DTHVNTGGSI 55
E + E + + C N G + T + G +
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPL 245
Query: 56 VFPTDSSA----MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRRED 111
+ + W + KA+ + ++ S + SV R D
Sbjct: 246 WIRCKAVHVNHGFGLTWEL-ENKALEEGNYFEMS---TYSTNRTMIRILFAFVSSVARND 301
Query: 112 RGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171
GYY C + ++ A + +V I++ +S D + + + K YP + T
Sbjct: 302 TGYYTCSS-SKHPSQS-ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359
Query: 172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231
W ++ +S + + G Y A N +K L
Sbjct: 360 WTFSR--------KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD-AQFTKMFTL 410
Query: 232 HVH 234
++
Sbjct: 411 NIR 413
Score = 76.3 bits (187), Expect = 3e-16
Identities = 26/208 (12%), Positives = 55/208 (26%), Gaps = 37/208 (17%)
Query: 28 FTCVVNNLGGHRVSSSVT---------DTHVNTGGSIVF---PTDSSAMKVAWIKADTKA 75
+ V + + V+ SI + W+ +
Sbjct: 30 YPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSL 89
Query: 76 VLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI 135
H + ++ I + G Y+ + + T V I
Sbjct: 90 NCQPHFDLQNRGVV-----------SMVILKMTETQAGEYLLFI-QSEATNYTILFTVSI 137
Query: 136 --PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF 193
+ LVC ++ P P + W D++ + P+
Sbjct: 138 RNTLLYTLRRPY---FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPA----- 189
Query: 194 SVESEVLSLTKVTRSEMGAYQCIAANGV 221
V+ E L ++ ++ +C A N +
Sbjct: 190 VVKKEEKVLHELFGTD---IRCCARNEL 214
Score = 66.6 bits (162), Expect = 6e-13
Identities = 16/118 (13%), Positives = 30/118 (25%), Gaps = 10/118 (8%)
Query: 104 IRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163
Y V+ +P A L + + V S L
Sbjct: 19 NNDSSVGKSSSYPM-VSESPEDLGCA-LRPQSSGTVYEAAA---VEVDVSASITLQVLVD 73
Query: 164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
W + + + P + V S + + K+T ++ G Y +
Sbjct: 74 APGNISCLWVFKHSS---LNCQPHFDLQNRGVVS--MVILKMTETQAGEYLLFIQSEA 126
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 100 bits (251), Expect = 5e-25
Identities = 51/246 (20%), Positives = 79/246 (32%), Gaps = 52/246 (21%)
Query: 20 IAQGRDA-IFTCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVF----PT 59
+ +DA + C+ N G VS V G +V P
Sbjct: 69 PNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPP 128
Query: 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
S + AWI + +N R L I V + D G Y C V
Sbjct: 129 HSGELSYAWIFNEYP--------SYQDNRRFVSQETG----NLYIAKVEKSDVGNYTCVV 176
Query: 120 NTNPMT---KQMAFLEVVIPPDISSEE--------TSGDMMVPEGGSAKLVCKAKGYPTP 168
TN +T +++ D E + +G + KL C A G P P
Sbjct: 177 -TNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP 235
Query: 169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKR 228
I WRR D P + + + +L + + + G+Y+C+A N +
Sbjct: 236 TILWRRAD-------GKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSR-GKNVAK 287
Query: 229 LMLHVH 234
L +
Sbjct: 288 GQLTFY 293
Score = 99.1 bits (247), Expect = 1e-24
Identities = 53/235 (22%), Positives = 78/235 (33%), Gaps = 52/235 (22%)
Query: 28 FTCVV-NNLGGHRVSSSVTDTHVNTGGSIV---------FPTDSSAMK------------ 65
+TCVV N + H+V T + G + FP A K
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 231
Query: 66 -----VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV- 119
+ W +AD I AR ++ L I + ++ED G Y C
Sbjct: 232 NPVPTILWRRAD--------GKPIARKARRHKSNG-----ILEIPNFQQEDAGSYECVAE 278
Query: 120 NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
N+ L P+ D+ V S CKA G P P W +
Sbjct: 279 NSRGKNVAKGQLTFYAQPNWVQIIN--DIHVAMEESVFWECKANGRPKPTYRWLKNG--- 333
Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+P ++ +E L++T V S+ G YQC+A N + L V
Sbjct: 334 -----DPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKH-GVIFSSAELSVI 382
Score = 78.7 bits (194), Expect = 3e-17
Identities = 31/187 (16%), Positives = 57/187 (30%), Gaps = 26/187 (13%)
Query: 42 SSVTDTHVNTGGSIVFP---TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98
S V + + + + W T + + + L
Sbjct: 13 SHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL-------- 64
Query: 99 TWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
L + +D G Y C TN + A L+ + + S + V G
Sbjct: 65 ---LINNPNKTQDAGTYQCIA-TNSFGTIVSREAKLQFAYLENFKTRTRS-TVSVRRGQG 119
Query: 156 AKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
L+C W + + +++ S E+ L + KV +S++G Y
Sbjct: 120 MVLLCGPPPHSGELSYAWIFNE------YPSYQDNRRFVSQETGNLYIAKVEKSDVGNYT 173
Query: 215 CIAANGV 221
C+ N V
Sbjct: 174 CVVTNTV 180
Score = 59.5 bits (144), Expect = 1e-10
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 12/103 (11%)
Query: 136 PPDISSEETSGDMMVP---EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
P E + +M P E KL C+ KG P P I W+ + ++
Sbjct: 5 GPVFVQEPS--HVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL-NGTDV-----DIGMDFR 56
Query: 193 FSVESEVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
+SV L + +++ G YQCIA N VS+ L
Sbjct: 57 YSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA 99
Score = 43.3 bits (102), Expect = 3e-05
Identities = 21/128 (16%), Positives = 36/128 (28%), Gaps = 43/128 (33%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P+++ + ++ +A + C G P + W
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKA------------------NG----RPKPT----YRW 329
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTK 126
+K + R+ + TLNI V D G Y C N +
Sbjct: 330 LKNG---------DPLLTRDRIQIEQG-----TLNITIVNLSDAGMYQCVA-ENKHGVIF 374
Query: 127 QMAFLEVV 134
A L V+
Sbjct: 375 SSAELSVI 382
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 98.9 bits (246), Expect = 5e-25
Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 47/239 (19%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
+ V+ + + VT+ +G++A+ C++ T ++ +
Sbjct: 83 LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI------------------TDPALK-DS-- 121
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
V+ ++ + VL + + IR + D Y+C+
Sbjct: 122 ----VSLMREGGRQVLRKTVYFFSPWR------------GFIIRKAKVLDSNTYVCKTMV 165
Query: 122 NPMTKQMAFLEVVI------PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE 175
N + + + PP I E + ++ G +A++VC A +
Sbjct: 166 NGRESTSTGIWLKVNRVHPEPPQIKLEPS--KLVRIRGEAAQIVCSATNAEVGFNVILKR 223
Query: 176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ ++ + N + LSL V + G Y C+A+N V T + + V
Sbjct: 224 GDTKLEIPLNSDFQDNYYKKVR-ALSLNAVDFQDAGIYSCVASNDV-GTRTATMNFQVV 280
Score = 83.8 bits (207), Expect = 2e-19
Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 9/151 (5%)
Query: 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEET 144
+ ++ TL R+ ++ G Y C L V P +
Sbjct: 37 PISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLL- 95
Query: 145 SGDMMVPEGGSAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT 203
+ ++ V EG A L C ++ RE ++ F +
Sbjct: 96 AQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQ------VLRKTVYFFSPWRGFIIR 149
Query: 204 KVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
K + Y C + S + L V+
Sbjct: 150 KAKVLDSNTYVCKTMVNGRESTSTGIWLKVN 180
Score = 53.4 bits (128), Expect = 1e-08
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 16/99 (16%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
P I +++V G + L C + G + W + + P S
Sbjct: 4 APVIEPSGP--ELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGS------ 51
Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
L+ T G Y+C S + L+V
Sbjct: 52 ---TLTTRNATFKNTGTYRCTELEDP-MAGSTTIHLYVK 86
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 95.6 bits (238), Expect = 1e-24
Identities = 46/222 (20%), Positives = 64/222 (28%), Gaps = 49/222 (22%)
Query: 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK 65
P F L N+ + +A C V GH P
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVT---GHPK-----------------PI------ 35
Query: 66 VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM- 124
V W + + +I + + + L I SV +D Y + TN
Sbjct: 36 VKWYRQG--------KEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA-TNQGG 86
Query: 125 -TKQMAFLEVVIPPDISS---EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
A LEV +P I E G + G + G P P ITW++ I
Sbjct: 87 SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLI 145
Query: 181 IVRSNPPSSQKVFSVESEVLSLTK---VTRSEMGAYQCIAAN 219
+ V SL V R + G Y A N
Sbjct: 146 D-----NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Score = 49.3 bits (118), Expect = 1e-07
Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 38/134 (28%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
VP + P L + V +G +G P
Sbjct: 98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPF------------------SG----KPDP- 134
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
+ W K +I NN V + T + V R+D G+Y+
Sbjct: 135 ---VITWQKGQ---------DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA-K 181
Query: 122 NP--MTKQMAFLEV 133
N + ++ L+V
Sbjct: 182 NRFGIDQKTVELDV 195
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 96.1 bits (239), Expect = 2e-24
Identities = 42/227 (18%), Positives = 65/227 (28%), Gaps = 52/227 (22%)
Query: 9 PDFLYPLE----NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM 64
P + + + F C G+ P
Sbjct: 16 PYWTNTEKMEKRLHAVPAANTVKFRCPAG---GN-------------------PM----P 49
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
+ W+K + R+ W+L + SV D+G Y C V N
Sbjct: 50 TMRWLKNGKE---------FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV-ENEY 99
Query: 125 --TKQMAFLEVVIPPD---ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK- 178
L+VV I + GG + VCK P I W + K
Sbjct: 100 GSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN 159
Query: 179 ------EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ + + S +EVL+L VT ++ G Y C +N
Sbjct: 160 GSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206
Score = 69.2 bits (169), Expect = 2e-14
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 131 LEVVIPPDISSEET--SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
P ++ E VP + K C A G P P + W + + KE +
Sbjct: 10 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEF--KQEHRI 66
Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
+ L + V S+ G Y C+ N
Sbjct: 67 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEY 99
Score = 48.0 bits (114), Expect = 5e-07
Identities = 28/138 (20%), Positives = 41/138 (29%), Gaps = 30/138 (21%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
N + G D F C +V S P + W
Sbjct: 119 ILQAGLPANASTVVGGDVEFVC--------KVYSDAQ------------PH------IQW 152
Query: 69 IKADTKAVLAIHEHVITNNARL-SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--T 125
IK K + L N +N L + +V D G Y+C+V +N +
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV-SNYIGQA 211
Query: 126 KQMAFLEVVIPPDISSEE 143
Q A+L V+ E
Sbjct: 212 NQSAWLTVLPKQQAPGRE 229
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 95.3 bits (237), Expect = 2e-24
Identities = 48/234 (20%), Positives = 78/234 (33%), Gaps = 45/234 (19%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F + T G A F C G P K+ W
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQAT---GD-------------------PR----PKIVW 40
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR-EDRGYYMCQVNTNPM--T 125
K K ++N + +D + L I+ +R D Y C +N +
Sbjct: 41 NKKGKK---------VSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA-SNNVGEI 90
Query: 126 KQMAFLEVVIPPDISSEETS-----GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
L V+ I + +V +A ++C A G P P+ITW + D +
Sbjct: 91 SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPV 149
Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+N +++ S L + + S+ G Y+C+A N S L+V
Sbjct: 150 DTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203
Score = 66.8 bits (163), Expect = 9e-14
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
PP + T D GG A +C+A G P PKI W ++ K V + +
Sbjct: 2 TGETPPRFT--RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKK---VSNQRFEVIE 56
Query: 192 VFSVESEVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
VL + + Y+C+A+N V +S L V
Sbjct: 57 FDDGSGSVLRIQPLRTPRDEAIYECVASNNV-GEISVSTRLTVL 99
Score = 41.3 bits (97), Expect = 8e-05
Identities = 22/137 (16%), Positives = 32/137 (23%), Gaps = 39/137 (28%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P + + + R A C +G P ++ W
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAA------------------SG----NPD----PEITW 142
Query: 69 IKADTKAVLAIHEHVITNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM--- 124
K V T+N + + L I D+G Y C TN
Sbjct: 143 FKDF--------LPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVA-TNSAGTR 193
Query: 125 TKQMAFLEVVIPPDISS 141
A L V
Sbjct: 194 YSAPANLYVRGTKHHHH 210
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 95.0 bits (236), Expect = 3e-24
Identities = 45/235 (19%), Positives = 70/235 (29%), Gaps = 41/235 (17%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
+V + + TC +G F + V W
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTY------------------SG----FSSPR----VEW 35
Query: 69 IKADTKAV-LAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN---TNPM 124
L + IT VT + + + SV R+D G Y C V+
Sbjct: 36 KFVQGSTTALVCYNSQITAPYADRVTFSSS---GITFSSVTRKDNGEYTCMVSEEGGQNY 92
Query: 125 TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KGYPTPKITWRREDNK----E 179
+ L V++PP + V G A L C G P + +W ++ +
Sbjct: 93 GEVSIHLTVLVPPSKPTISV--PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD 150
Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+S +S L VT + G Y C A NG T + H+
Sbjct: 151 AKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY-GTAMRSEAAHMD 204
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 99.8 bits (248), Expect = 3e-24
Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 39/216 (18%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
L P + ++ G + C + + + D
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ---- 280
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
S + TL I V R D+G Y C ++ + K
Sbjct: 281 ----------------------SGSEMKKFLSTLTIDGVTRSDQGLYTCAA-SSGLMTKK 317
Query: 127 QMAFLEVVIPPDISSE-ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
F+ V P ++ + G ++ K GYP P+I W + + +
Sbjct: 318 NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPL----- 371
Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
S+ + VL++ +V+ + G Y I N +
Sbjct: 372 -ESNHTIK--AGHVLTIMEVSERDTGNYTVILTNPI 404
Score = 98.3 bits (244), Expect = 9e-24
Identities = 36/238 (15%), Positives = 81/238 (34%), Gaps = 43/238 (18%)
Query: 17 NVTIAQGRDA-IFTCVVNNLGGHRVSSSVT-------------DTHVNTGGSIVFPTDSS 62
+ I + ++ C N G R ++ D S+ +
Sbjct: 516 TLVIQAANVSALYKCEAVNKVG-RGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTAD 574
Query: 63 AM---KVAWIKADTKAVLAIHEHVITNNARLS----------VTHNDANTWTLNIRSVRR 109
+ W K + + + T + +++ + + +++
Sbjct: 575 RSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASL 634
Query: 110 EDRGYYMCQVNTNPMT--KQMAFLEVVI----PPDISSEETSGDMMVPEGGSAKLVCKAK 163
+D+G Y+C + T + ++ + P I+ + G S ++ C A
Sbjct: 635 QDQGDYVCLA-QDRKTKKRHCVVRQLTVLERVAPTITGNLE--NQTTSIGESIEVSCTAS 691
Query: 164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
G P P+I W + DN+ + S V + L++ +V + + G Y C A + +
Sbjct: 692 GNPPPQIMWFK-DNETL-----VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 743
Score = 85.6 bits (211), Expect = 3e-19
Identities = 40/240 (16%), Positives = 71/240 (29%), Gaps = 33/240 (13%)
Query: 21 AQGRDA-IFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL-- 77
G D + C S I +D + + V+
Sbjct: 93 VIGNDTGAYKCFYRETDL--ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPC 150
Query: 78 --------------AIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
+ + + R+S I S G C+ N
Sbjct: 151 LGSISNLNVSLCARYPEKRFVPDGNRISWDSKK----GFTIPSYMISYAGMVFCEAKIND 206
Query: 124 MTKQ-MAFLEVVIPPDIS--SEETSGDMMVPEGGSAKLVCKAKGYPTPKITWR------R 174
+ Q + ++ VV+ I S + + G L C A+ I + +
Sbjct: 207 ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK 266
Query: 175 EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+K+++ R S L++ VTRS+ G Y C A++G+ T + VH
Sbjct: 267 HQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL-MTKKNSTFVRVH 325
Score = 83.7 bits (206), Expect = 1e-18
Identities = 33/240 (13%), Positives = 73/240 (30%), Gaps = 28/240 (11%)
Query: 1 MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTD 60
VP + E + P+++ G TC V + P+
Sbjct: 418 YVPPQIGEKSLISPVDSYQY--GTTQTLTCTVY---AIPPPHHIHWYWQLEEECANEPSQ 472
Query: 61 SSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
+ ++ + + ++V + I N N + Y C+
Sbjct: 473 AVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEA 532
Query: 120 NTNPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN 177
N + +++ V P+I+ + DM E S L C A +TW +
Sbjct: 533 -VNKVGRGERVISFHVTRGPEITLQP---DMQPTEQESVSLWCTADRSTFENLTWYKLGP 588
Query: 178 KEIIVRSNPPSSQKVFSVESE----------------VLSLTKVTRSEMGAYQCIAANGV 221
+ + + + ++++ ++ L + + G Y C+A +
Sbjct: 589 QPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRK 648
Score = 83.3 bits (205), Expect = 1e-18
Identities = 22/211 (10%), Positives = 49/211 (23%), Gaps = 31/211 (14%)
Query: 27 IFTCVVNNLGGHRVSSSV----------TDTHVNTGGSIVFP-TDSSAMKVAWIKADTKA 75
++ CV + S + ++ + W
Sbjct: 11 LWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLDWLWPN----- 65
Query: 76 VLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI 135
++ ++ + TL I V D G Y C + ++ V
Sbjct: 66 ----NQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFY-RETDLASVIYVYVQD 120
Query: 136 P-----PDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
+S + + + + + C R K + P
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFV-----PDGN 175
Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
++ + ++ S G C A
Sbjct: 176 RISWDSKKGFTIPSYMISYAGMVFCEAKIND 206
Score = 77.5 bits (190), Expect = 2e-16
Identities = 43/258 (16%), Positives = 68/258 (26%), Gaps = 50/258 (19%)
Query: 21 AQGRDA-IFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL-- 77
D ++TC ++ + +S T V S + + +
Sbjct: 297 VTRSDQGLYTCAASSGLMTKKNS----TFVRVHEKPFVAFGSGMESLVEATVGERVRIPA 352
Query: 78 ---AIHEHVIT---NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQ 127
I N L H L I V D G Y + TNP+
Sbjct: 353 KYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVIL-TNPISKEKQSH 411
Query: 128 MAFLEVVIPPDISSEETSGDM-MVPEGGSAKLVCKAKGYPTP-KITWRREDNKEII---- 181
+ L V +PP I + + G + L C P P I W + +E
Sbjct: 412 VVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPS 471
Query: 182 -------------------------VRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216
+ N + V +L + Y+C
Sbjct: 472 QAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCE 531
Query: 217 AANGVPPTVSKRLMLHVH 234
A N V + + HV
Sbjct: 532 AVNKV-GRGERVISFHVT 548
Score = 47.1 bits (111), Expect = 2e-06
Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 41/137 (29%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P LEN T + G +C +G P ++ W
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTA------------------SG----NPP----PQIMW 700
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
K + + ++ + + + L IR VR+ED G Y CQ + + K
Sbjct: 701 FKDN---------ETLVEDSGIVLKDGNR---NLTIRRVRKEDEGLYTCQA-CSVLGCAK 747
Query: 127 QMAFLEVVIPPDISSEE 143
AF + + ++ E
Sbjct: 748 VEAFFIIEGAQEKTNLE 764
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 94.6 bits (235), Expect = 4e-24
Identities = 40/228 (17%), Positives = 65/228 (28%), Gaps = 38/228 (16%)
Query: 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
V I + +C +G F + V W
Sbjct: 10 SEPEVRIPENNPVKLSCAY------------------SG----FSSPR----VEWKFDQG 43
Query: 74 KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN---TNPMTKQMAF 130
+ + + + +SV RED G Y C V+ N +
Sbjct: 44 DTTRLVCYNNKITASYEDRVTFLPTG--ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KGYPTPKITWRREDNK---EIIVRSNP 186
L V++PP + G A L C G P + TW ++
Sbjct: 102 LIVLVPPSKPTVNI--PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAF 159
Query: 187 PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+S V + + L ++ S+ G Y C A NG T + +
Sbjct: 160 SNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY-GTPMTSNAVRME 206
Score = 87.3 bits (216), Expect = 2e-21
Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN----PPSSQK 191
++ + ++ +PE KL C G+ +P++ W+ + + S +
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 192 VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK-RLMLHVH 234
+ ++ VTR + G Y C+ + + + ++ L V
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
Score = 38.0 bits (88), Expect = 0.001
Identities = 17/127 (13%), Positives = 27/127 (21%), Gaps = 31/127 (24%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P + G A+ TC GS P + W
Sbjct: 108 PSKPTVNIPSSATIGNRAVLTCSE------------------QDGS---PP----SEYTW 142
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
K +N+ + L + D G Y C+ N
Sbjct: 143 FKDGIVMPTNPKSTRAFSNSSYVLNPTTG---ELVFDPLSASDTGEYSCEA-RNGYGTPM 198
Query: 127 QMAFLEV 133
+ +
Sbjct: 199 TSNAVRM 205
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 94.4 bits (235), Expect = 4e-24
Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 49/222 (22%)
Query: 4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
+ G P +++VT G A +C + G P
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQI------------------VG----RPL---- 36
Query: 64 MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
+ W + + + + + ++ + T TL + + +ED G Y C TN
Sbjct: 37 PDIKWYRFGKE---------LIQSRKYKMSSDG-RTHTLTVMTEEQEDEGVYTCIA-TNE 85
Query: 124 M--TKQMAFLEVVIPPDISSEETSG-DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
+ + + L + P G + +L G P P +TW K +
Sbjct: 86 VGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH-GQKLL 144
Query: 181 IVRSNPPSSQKVFSVESEVLSLT--KVTRSE-MGAYQCIAAN 219
S L V R G Y+ +N
Sbjct: 145 -----QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSN 181
Score = 65.5 bits (160), Expect = 3e-13
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
P I E D+ G +A+L C+ G P P I W R KE+ S + S
Sbjct: 7 APGIRKEMK--DVTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKEL-----IQSRKYKMSS 58
Query: 196 ESEVLSLT--KVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ +LT + + G Y CIA N V V L +
Sbjct: 59 DGRTHTLTVMTEEQEDEGVYTCIATNEV-GEVETSSKLLLQ 98
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 96.2 bits (239), Expect = 9e-24
Identities = 44/231 (19%), Positives = 68/231 (29%), Gaps = 54/231 (23%)
Query: 9 PDFLYP----LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM 64
P + P + + + F C G+ P+
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRCPAA---GNPT-----------------PS----- 154
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
++W+K + R+ W+L + SV DRG Y C V N
Sbjct: 155 -ISWLKNGRE---------FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV-ENKF 203
Query: 125 --TKQMAFLEVVIPPD---ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED--- 176
+Q L+V+ I + G + CK P I W +
Sbjct: 204 GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVN 263
Query: 177 ------NKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
+ V + E EVLSL VT + G Y C+A N +
Sbjct: 264 GSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314
Score = 85.8 bits (212), Expect = 6e-20
Identities = 37/237 (15%), Positives = 59/237 (24%), Gaps = 66/237 (27%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
E + G +C P W
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPP-------------------------PGGGPMGPTVW 43
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+K T + + R+ V L + + ED G Y C+
Sbjct: 44 VKDGTG---------LVPSERVLV-----GPQRLQVLNASHEDSGAYSCRQRLTQRVLCH 89
Query: 129 AFLEVVIPPDISSEETSG------------------------DMMVPEGGSAKLVCKAKG 164
+ V P +E + VP + + C A G
Sbjct: 90 FSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAG 149
Query: 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
PTP I+W + + +E R + L + V S+ G Y C+ N
Sbjct: 150 NPTPSISWLK-NGREF--RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKF 203
Score = 60.8 bits (147), Expect = 5e-11
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 10/99 (10%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
P + ++ G + +L C G P W + D + S++V
Sbjct: 7 VPGPEPGQQE-QLVFGSGDAVELSCPPPGGGPMGPTVWVK-DGTGL------VPSERV-L 57
Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
V + L + + + GAY C + +
Sbjct: 58 VGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTD 96
Score = 47.3 bits (112), Expect = 1e-06
Identities = 25/135 (18%), Positives = 38/135 (28%), Gaps = 32/135 (23%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
N T G D F C +V S P + W
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHC--------KVYSDAQ------------PH------IQW 256
Query: 69 IK---ADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM- 124
+K + V +T D L++ +V ED G Y C N +
Sbjct: 257 LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA-GNSIG 315
Query: 125 -TKQMAFLEVVIPPD 138
+ A+L V+ +
Sbjct: 316 FSHHSAWLVVLPAEE 330
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 96.9 bits (241), Expect = 9e-24
Identities = 42/221 (19%), Positives = 65/221 (29%), Gaps = 54/221 (24%)
Query: 3 PVRGFEPDFLYPL-ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
R + P + G+ C G+ P
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLECFAF---GN-------------------PV-- 236
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-N 120
++ W K D +++ L+I++V ED G Y C+ N
Sbjct: 237 --PQIKWRKLDGS----QTSKWLSSEP------------LLHIQNVDFEDEGTYECEAEN 278
Query: 121 TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
+ + PD T D G + C A G P P + W R+
Sbjct: 279 IKGRDTYQGRIIIHAQPDWLDVIT--DTEADIGSDLRWSCVASGKPRPAVRWLRDG---- 332
Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
P +SQ V L +K+ + G YQC+A N
Sbjct: 333 ----QPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKH 369
Score = 93.4 bits (232), Expect = 2e-22
Identities = 45/247 (18%), Positives = 78/247 (31%), Gaps = 54/247 (21%)
Query: 20 IAQGRDA-IFTCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVF----PT 59
+ +DA + CV N G VS + + G ++F P
Sbjct: 68 PVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPP 127
Query: 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
A+ W+ + + I + R V+ N L I D G Y C
Sbjct: 128 HYPALSYRWLLNE-------FPNFIPADGRRFVSQTTGN---LYIAKTEASDLGNYSCFA 177
Query: 120 NTNPM-----TKQMAFLEVVIPPDISSEE-------TSGDMMVPEGGSAKLVCKAKGYPT 167
T+ + + F ++ + + + + D G L C A G P
Sbjct: 178 -TSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPV 236
Query: 168 PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227
P+I WR+ D + + L + V + G Y+C A N +
Sbjct: 237 PQIKWRKLDGSQTSKWLSSEPL----------LHIQNVDFEDEGTYECEAENIK-GRDTY 285
Query: 228 RLMLHVH 234
+ + +H
Sbjct: 286 QGRIIIH 292
Score = 79.5 bits (196), Expect = 2e-17
Identities = 31/196 (15%), Positives = 54/196 (27%), Gaps = 24/196 (12%)
Query: 42 SSVTDTHVNTGGSIVFP---TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98
+ + + + W T+ + L
Sbjct: 12 AHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL-------- 63
Query: 99 TWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
+ V+ +D G Y C TN + A L + S+EE + + EG
Sbjct: 64 ---VISNPVKAKDAGSYQCVA-TNARGTVVSREASLRFGFLQEFSAEERD-PVKITEGWG 118
Query: 156 AKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
C YP W + I P ++ S + L + K S++G Y
Sbjct: 119 VMFTCSPPPHYPALSYRWLLNEFPNFI----PADGRRFVSQTTGNLYIAKTEASDLGNYS 174
Query: 215 CIAANGVPPTVSKRLM 230
C A + +
Sbjct: 175 CFATSHIDFITKSVFS 190
Score = 56.0 bits (135), Expect = 2e-09
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 136 PPDISSEETSGDMMVPEGGS---AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
P + + PEG + L C+A+ P W+ + E+
Sbjct: 4 GPVFEEQ--PAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTEL-----KMGPDSR 55
Query: 193 FSVESEVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
+ + + L ++ +++ G+YQC+A N VS+ L
Sbjct: 56 YRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFG 98
Score = 42.2 bits (99), Expect = 7e-05
Identities = 23/127 (18%), Positives = 37/127 (29%), Gaps = 43/127 (33%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
PD+L + + G D ++CV +G P + V W
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVA------------------SG----KPRPA----VRW 328
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTK 126
++ + + R+ V+ L + ED G Y C N
Sbjct: 329 LRDG---------QPLASQNRIEVSGG-----ELRFSKLVLEDSGMYQCVA-ENKHGTVY 373
Query: 127 QMAFLEV 133
A L V
Sbjct: 374 ASAELTV 380
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 95.3 bits (237), Expect = 4e-23
Identities = 47/241 (19%), Positives = 84/241 (34%), Gaps = 54/241 (22%)
Query: 27 IFTCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVF---PTDSS-AMKVA 67
+ C N G +S+ + V G + P + +
Sbjct: 91 EYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIF 150
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRRED-RGYYMCQVNTNPMT- 125
W+ + + IT + R+S HN L +V +D + Y C T
Sbjct: 151 WMSSSME--------PITQDKRVSQGHNG----DLYFSNVMLQDMQTDYSCNA-RFHFTH 197
Query: 126 --KQMAFLEVVI----------PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWR 173
+Q + + P + + T+ MV G L C A G PTP I W
Sbjct: 198 TIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWY 257
Query: 174 REDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
++ + PS + F ++ L +T V+ + G Y C+A+N + ++ + + V
Sbjct: 258 KKG-------GDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKM-GSIRHTISVRV 309
Query: 234 H 234
Sbjct: 310 K 310
Score = 93.4 bits (232), Expect = 3e-22
Identities = 44/223 (19%), Positives = 68/223 (30%), Gaps = 50/223 (22%)
Query: 3 PVRGFEPDFLYP---LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPT 59
V P F+YP + + +G D + C+ +G PT
Sbjct: 214 GVAERTPSFMYPQGTASSQMVLRGMDLLLECIA------------------SG----VPT 251
Query: 60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
+AW K + + N L I +V ED G Y C
Sbjct: 252 ----PDIAWYK-KGGDLPSDKAKFENFNK------------ALRITNVSEEDSGEYFCLA 294
Query: 120 -NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
N + + V P E ++++ G +LVC+A G P P + W N
Sbjct: 295 SNKMGSIRHTISVRVKAAPYWLDEPK--NLILAPGEDGRLVCRANGNPKPTVQWMV--NG 350
Query: 179 EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
E + V + + S YQC +N
Sbjct: 351 EPL---QSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEH 390
Score = 67.6 bits (165), Expect = 2e-13
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
E+ PP I+ + D +V + + C+AKG P P W R +++ + +P
Sbjct: 9 IQNELTQPPTITKQSAK-DHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRV 66
Query: 189 SQKVFSVESEVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
S + S + + E G YQC A N +S R+ L V
Sbjct: 67 SMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVS 113
Score = 39.5 bits (92), Expect = 6e-04
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 40/128 (31%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P +L +N+ +A G D C G P V W
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRA------------------NG----NPK----PTVQW 346
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTK 126
+ + + + N V + T+ R + R Y C +N
Sbjct: 347 MV-NGEPL-----QSAPPNPNREVAGD-----TIIFRDTQISSRAVYQCNT-SNEHGYLL 394
Query: 127 QMAFLEVV 134
AF+ V+
Sbjct: 395 ANAFVSVL 402
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 94.1 bits (234), Expect = 4e-23
Identities = 45/234 (19%), Positives = 78/234 (33%), Gaps = 48/234 (20%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F+ ++ G A F C TG +V W
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQA------------------TG--------DPKPRVTW 40
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR-EDRGYYMCQVNTNPM--T 125
K K + + ++ +++ L I+ +R D Y C N +
Sbjct: 41 NKKGKK---------VNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA-QNSVGEI 90
Query: 126 KQMAFLEVVIPPDISSE-----ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
A L V+ + S +V +A ++C A G P P+ITW + D +
Sbjct: 91 TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPV 149
Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
S+ ++ + S L + ++ G Y+C+A N S L+V
Sbjct: 150 ---DPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR 200
Score = 91.0 bits (226), Expect = 5e-22
Identities = 39/219 (17%), Positives = 65/219 (29%), Gaps = 55/219 (25%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P+ + + + R A C + G+ P + W
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAAS---GNPD-----------------PE------ITW 142
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
K D V +N R+ + L I S D+G Y C TN
Sbjct: 143 FK-DFLPV-----DPSASNGRIKQLRSG----ALQIESSEETDQGKYECVA-TNSAGVRY 191
Query: 126 KQMAFLEV---VIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIV 182
A L V + P S + GG+ + C A G P P + W + +++
Sbjct: 192 SSPANLYVRVQNVAPRFSILPM--SHEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDLTP 248
Query: 183 RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
+ P + L + Y C+A + +
Sbjct: 249 EDDMPVGR---------NVLELTDVKDSANYTCVAMSSL 278
Score = 65.2 bits (159), Expect = 1e-12
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
PP E D + GG A VC+A G P P++TW ++ K V S + +
Sbjct: 6 PPRFIKEPK--DQIGVSGGVASFVCQATGDPKPRVTWNKKGKK---VNSQRFETIEFDES 60
Query: 196 ESEVLSLTKVTRSE-MGAYQCIAANGV 221
VL + + Y+C+A N V
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSV 87
Score = 47.1 bits (112), Expect = 1e-06
Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 43/145 (29%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
V V+ P F + I G + TCV G P
Sbjct: 199 VRVQNVAPRFSILPMSHEIMPGGNVNITCVA------------------VG----SPM-- 234
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-N 120
V W++ +T + V + +D Y C +
Sbjct: 235 --PYVKWMQGAE---------DLTPEDDMPVG-------RNVLELTDVKDSANYTCVAMS 276
Query: 121 TNPMTKQMAFLEVVIPPDISSEETS 145
+ + + +A + V P ++
Sbjct: 277 SLGVIEAVAQITVKSLPKAGTKHHH 301
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 91.3 bits (226), Expect = 7e-23
Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 17/200 (8%)
Query: 45 TDTHVNTGGSIVFP---TDSSAMKVAWIKADTKAVLA-IHEHVITNNARLSV-THNDANT 99
V +++ + AW K +T A+ I V +N + ++
Sbjct: 7 VPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREI 66
Query: 100 W----TLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
+L + + +D G Y + + N Q V P + V E
Sbjct: 67 IYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELD 126
Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
S L C + I W +++ + + + S + +L + + R + G YQ
Sbjct: 127 SVTLTCLSNDIG-ANIQWLF-NSQSL-----QLTERMTLSQNNSILRIDPIKREDAGEYQ 179
Query: 215 CIAANGVPPTVSKRLMLHVH 234
C +N V S + L +
Sbjct: 180 CEISNPVSVRRSNSIKLDII 199
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 91.5 bits (227), Expect = 1e-22
Identities = 41/230 (17%), Positives = 62/230 (26%), Gaps = 53/230 (23%)
Query: 9 PDFLYPL----ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM 64
P + P + + + F C G+ PT S
Sbjct: 12 PYWTRPERMDKKLLAVPAANTVRFRCPAA---GN-------------------PTPS--- 46
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
++W+K R+ W+L + SV DRG Y C V N
Sbjct: 47 -ISWLKNG---------REFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV-ENKF 95
Query: 125 --TKQMAFLEVV---IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK- 178
+Q L+V+ I + G + CK P I W +
Sbjct: 96 GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVN 155
Query: 179 -------EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
+ S L L V+ + G Y C A N +
Sbjct: 156 GSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI 205
Score = 51.5 bits (123), Expect = 4e-08
Identities = 26/151 (17%), Positives = 42/151 (27%), Gaps = 35/151 (23%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
N T G D F C +V S P + W
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHC--------KVYSDAQ------------PH------IQW 148
Query: 69 IKADTKAVLAIHEH--VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-- 124
+K + + ++ + L + +V D G Y+C+ TN +
Sbjct: 149 LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRA-TNFIGV 207
Query: 125 TKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
++ +L V P E E GS
Sbjct: 208 AEKAFWLSVHGPRAAEEELVE----ADEAGS 234
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 90.2 bits (224), Expect = 2e-22
Identities = 49/238 (20%), Positives = 77/238 (32%), Gaps = 55/238 (23%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
P+ + +N + G A F C G P S +
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAAR---GD-------------------PPPS----IV 39
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR-EDRGYYMCQVNTNPM-- 124
W K + K V +R +V L I VR D Y C N +
Sbjct: 40 WRK-NGKKV-------SGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA-ENGVGD 90
Query: 125 -TKQMAFLEVV-------IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
A L + P I+ ++ G + + CKA G PTP I W + +
Sbjct: 91 AVSADATLTIYEGDKTPAGFPVITQGPG--TRVIEVGHTVLMTCKAIGNPTPNIYWIK-N 147
Query: 177 NKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
++ S +S++ L + + G Y+C+A N + SK L+V
Sbjct: 148 QTKV------DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199
Score = 68.7 bits (168), Expect = 2e-14
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
PP+I + V GG A C A+G P P I WR+ + K++ S S V
Sbjct: 3 GAHPPEII--RKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKV---SGTQSRYTV 56
Query: 193 FSVES--EVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
+L + V Y+C+A NGV VS L ++
Sbjct: 57 LEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY 101
Score = 43.2 bits (102), Expect = 2e-05
Identities = 27/138 (19%), Positives = 38/138 (27%), Gaps = 43/138 (31%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P I G + TC G+ PT + + W
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAI---GN-------------------PTPN----IYW 144
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
IK V +N R S+ L I + R ED+G Y C N M
Sbjct: 145 IKNQ--------TKVDMSNPRYSL-----KDGFLQIENSREEDQGKYECVA-ENSMGTEH 190
Query: 126 KQMAFLEVVIPPDISSEE 143
+ L V + +
Sbjct: 191 SKATNLYVKVRRVGTKHH 208
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 93.5 bits (232), Expect = 2e-22
Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 46/237 (19%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
+ + + +G A+ C++ + V V+W
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEV-----------------------VSW 140
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRRED-RGYYMCQVNTNPMT-- 125
+ + + + V + L+IR V ED Y C+ + +T
Sbjct: 141 HTDEEENYF----PGAEYDGKYLVLPSG----ELHIREVGPEDGYKSYQCRT-KHRLTGE 191
Query: 126 ---KQMAFLEVVIPPDISSEE-----TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN 177
V+ P SS + + + L+C A+G+P P W +
Sbjct: 192 TRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIE 251
Query: 178 KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
++ + + S L + + G Y C+ N V S +L V
Sbjct: 252 GTTRKQAVVLNDR--VKQVSGTLIIKDAVVEDSGKYLCVVNNSV-GGESVETVLTVT 305
Score = 92.7 bits (230), Expect = 3e-22
Identities = 38/221 (17%), Positives = 58/221 (26%), Gaps = 51/221 (23%)
Query: 28 FTCVVNNLGGHRVSSSVT-----------------------DTHVNTGGSIVFPTDSSAM 64
+ C + S T + +I +
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGF 239
Query: 65 ---KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-N 120
W K E A + + TL I+ ED G Y+C V N
Sbjct: 240 PAPSFRWYKFI--------EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 291
Query: 121 TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
+ L V P + V G A C+ G P ++W + + +
Sbjct: 292 SVGGESVETVLTVTAPLSAKIDPP--TQTVDFGRPAVFTCQYTGNPIKTVSWMK--DGKA 347
Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
I S VL + V + + G YQC N
Sbjct: 348 IGHSE------------SVLRIESVKKEDKGMYQCFVRNDR 376
Score = 61.9 bits (150), Expect = 2e-11
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
P E T+ + A++ CKA G P P+I W R D +
Sbjct: 3 GPVFLKEPTN-RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAV-----GDVPGLRQIS 56
Query: 196 ESEVLSLTKVTRSEM------GAYQCIAANGVPPTVSKRLMLHV 233
L + Y C+A N +S+ + +
Sbjct: 57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA 100
Score = 36.5 bits (84), Expect = 0.006
Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 47/126 (37%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
T+ GR A+FTC G+ P + V+W
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYT---GN-------------------PIKT----VSW 341
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+K + + L I SV++ED+G Y C V + + +
Sbjct: 342 MK----------------DGKAIGHSES----VLRIESVKKEDKGMYQCFVRNDRESAEA 381
Query: 129 -AFLEV 133
A L++
Sbjct: 382 SAELKL 387
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 87.8 bits (217), Expect = 1e-21
Identities = 35/210 (16%), Positives = 68/210 (32%), Gaps = 39/210 (18%)
Query: 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
P E T+ G C + ++ I+A
Sbjct: 8 PKEVYTVDVGSSVSLECDFDR--------------------------RECTELEGIRASL 41
Query: 74 KAVLAIHEHVITNNARLSVTHNDANT--WTLNIRSVRREDRGYYMCQVNTNPMTKQMAFL 131
+ V + R ++ +I SV+ D G Y C V +L
Sbjct: 42 QKV---ENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDY-KYL 97
Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
V + +T + VP G +L C+A+GYP +++W+ + S+ + +
Sbjct: 98 TVKVKASYMRIDTR-ILEVPGTGEVQLTCQARGYPLAEVSWQ--NVSVPANTSHIRTPEG 154
Query: 192 VFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
++ V S + ++ + C+ N
Sbjct: 155 LYQVTSVL----RLKPQPSRNFSCMFWNAH 180
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 87.6 bits (217), Expect = 2e-21
Identities = 39/242 (16%), Positives = 67/242 (27%), Gaps = 75/242 (30%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
E+ + G+ C GH P ++ W
Sbjct: 19 SKITVNPESKAVLAGQFVKLCCRAT---GH-------------------PF----VQYQW 52
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
K N + + NT L +V +D G+Y+C+V N
Sbjct: 53 FK---------------MNKEIP----NGNTSELIFNAVHVKDAGFYVCRV-NNNFTFEF 92
Query: 126 KQMAFLEVVIPPDISSEETSG-------------DMMVPEGGSAKLVCKAKGYPTPKITW 172
Q + L+V P+ G + G + L C A G P P W
Sbjct: 93 SQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQW 152
Query: 173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232
+ + + + ++ + V G Y C N SK++ +
Sbjct: 153 FK-NELPLTHETK------------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199
Query: 233 VH 234
+
Sbjct: 200 ID 201
Score = 69.9 bits (171), Expect = 9e-15
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 13/106 (12%)
Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
++P V G KL C+A G+P + W + +
Sbjct: 9 HHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMN------------ 56
Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+++ + + L V + G Y C N S+ L V
Sbjct: 57 -KEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVC 101
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 87.2 bits (216), Expect = 4e-21
Identities = 47/232 (20%), Positives = 81/232 (34%), Gaps = 41/232 (17%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P + ++ + + A C V G P + W
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKV------------------EG----KPE----PTIEW 43
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
K D + V + + A + ++ + +D G Y C N +
Sbjct: 44 FK-DGEPV-----STNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVA-KNRVGQAV 96
Query: 126 KQMAFLEV-VIPPDISSEETSGDMMVPEGGSAKLVC-KAKGYPTPKITWRREDNK-EIIV 182
+ A L++ V+ D E D V +G +A L C KG P P + W ++ + +
Sbjct: 97 SRHASLQIAVLRDDFRVEPK--DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLK 154
Query: 183 RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ +S +V V+ L ++ V + G Y+CIA N V S L V
Sbjct: 155 AMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
Score = 48.7 bits (116), Expect = 2e-07
Identities = 23/143 (16%), Positives = 39/143 (27%), Gaps = 34/143 (23%)
Query: 4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
+ DF ++ +A+G A+ C P
Sbjct: 104 IAVLRDDFRVEPKDTRVAKGETALLECGP-------------------------PKGIPE 138
Query: 64 MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
+ WIK D + + ++R+ + L I +V D G Y C N
Sbjct: 139 PTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGG----NLLISNVEPIDEGNYKCIA-QNL 192
Query: 124 M---TKQMAFLEVVIPPDISSEE 143
+ A L V +
Sbjct: 193 VGTRESSYAKLIVQVKAAAHHHH 215
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 90.4 bits (224), Expect = 4e-21
Identities = 43/242 (17%), Positives = 78/242 (32%), Gaps = 54/242 (22%)
Query: 15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSV-----------------TDTHVNTGGSIVF 57
+ N+T ++TC NN ++V V ++ F
Sbjct: 430 ISNITEKNS--GLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAF 487
Query: 58 PTDSSA--MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYY 115
+ A W + + RL +++ + TL + +V R D Y
Sbjct: 488 TCEPEAQNTTYLWWVNGQS---------LPVSPRLQLSNGNR---TLTLFNVTRNDARAY 535
Query: 116 MCQVNTNPM---TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
+C + N + L+V+ PD D G + L C + P+P+ +W
Sbjct: 536 VCGI-QNSVSANRSDPVTLDVLYGPDTPIISPP-DSSYLSGANLNLSCHSASNPSPQYSW 593
Query: 173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSKRLML 231
R + ++VL + K+T + G Y C +N S +
Sbjct: 594 RING---------------IPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Query: 232 HV 233
V
Sbjct: 639 TV 640
Score = 89.2 bits (221), Expect = 1e-20
Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 51/228 (22%)
Query: 29 TCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVFPTDSSAM---KVAWIK 70
C + N S V T+ G ++ +++ + +W+
Sbjct: 358 ECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI 417
Query: 71 ADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM-- 128
+ T L I ++ ++ G Y CQ N +
Sbjct: 418 ---------------DGNIQQHTQ------ELFISNITEKNSGLYTCQA-NNSASGHSRT 455
Query: 129 AFLEVVIPPDI--SSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP 186
+ + ++ S ++ V + + C+ + T + W + + + P
Sbjct: 456 TVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV--NGQSL-----P 508
Query: 187 PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
S + S + L+L VTR++ AY C N V S + L V
Sbjct: 509 VSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556
Score = 87.7 bits (217), Expect = 4e-20
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 52/237 (21%)
Query: 21 AQGRDA-IFTCVVNNLGGHRVSSSVT----------------DTHVNTGGSIVF--PTDS 61
D +T V ++ V ++ F ++
Sbjct: 78 IIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPET 137
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
W + + + RL +++ + TL + +V R D Y C+
Sbjct: 138 QDATYLWWVNNQS---------LPVSPRLQLSNGNR---TLTLFNVTRNDTASYKCET-Q 184
Query: 122 NPMTKQM---AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
NP++ + L V+ PD + + G + L C A P + +W
Sbjct: 185 NPVSARRSDSVILNVLYGPDAPTISPL-NTSYRSGENLNLSCHAASNPPAQYSWFVNGT- 242
Query: 179 EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSKRLMLHVH 234
F ++ L + +T + G+Y C A N + + V+
Sbjct: 243 --------------FQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVY 285
Score = 87.3 bits (216), Expect = 5e-20
Identities = 42/230 (18%), Positives = 75/230 (32%), Gaps = 51/230 (22%)
Query: 27 IFTCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVF---PTDSSAMKVAW 68
+ C N R S SV +T +G ++ + + +W
Sbjct: 178 SYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW 237
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-- 126
N T L I ++ + G Y CQ N T
Sbjct: 238 FV---------------NGTFQQSTQ------ELFIPNITVNNSGSYTCQA-HNSDTGLN 275
Query: 127 --QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS 184
+ + V P ++ V + + L C+ + T + W +S
Sbjct: 276 RTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNN-------QS 328
Query: 185 NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
P S + S ++ L+L VTR+++G Y+C N + S ++L+V
Sbjct: 329 LPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVL 378
Score = 82.3 bits (203), Expect = 3e-18
Identities = 36/207 (17%), Positives = 78/207 (37%), Gaps = 18/207 (8%)
Query: 39 RVSSSVTDTHVNTGGSIVFP---TDSSAMKVAWIKADTK-AVLAIHEHVITNNARLSVTH 94
+++ T +V G ++ +W K + I +VI
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 95 NDA-----NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDIS--SEETSGD 147
+L I+++ + D G+Y V + + + A + + P++ S ++
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
V + + C+ + + W +N+ + P S + S + L+L VTR
Sbjct: 121 KPVEDKDAVAFTCEPETQDATYLWWV--NNQSL-----PVSPRLQLSNGNRTLTLFNVTR 173
Query: 208 SEMGAYQCIAANGVPPTVSKRLMLHVH 234
++ +Y+C N V S ++L+V
Sbjct: 174 NDTASYKCETQNPVSARRSDSVILNVL 200
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 87.3 bits (215), Expect = 7e-21
Identities = 31/233 (13%), Positives = 56/233 (24%), Gaps = 29/233 (12%)
Query: 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
V + G C + ++ G S T W
Sbjct: 8 THTEVEVHAGGTVELPCSYQLANDTQPPV-ISWLK---GASPDRSTKVFKGNYNWQGEGL 63
Query: 74 KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLE- 132
V + + + + TL + V +D G Y CQV + +
Sbjct: 64 GFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 123
Query: 133 -------VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-------- 177
P + T+ + V EG + C +TW
Sbjct: 124 SVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETG 183
Query: 178 ---------KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
+ I + + + + L + ++ G C A G
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQ 236
Score = 45.3 bits (106), Expect = 5e-06
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 28/114 (24%)
Query: 139 ISSEETSGDMMVPEGGSAKLVCK---AKGYPTPKITWRREDNKEIIVRSNPPSSQK---- 191
++ T ++ V GG+ +L C A P I+W + + + + +
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 192 ---------------------VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224
V ++ + L LT V + G Y C A T
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRT 116
Score = 43.0 bits (100), Expect = 3e-05
Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 16/128 (12%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
+ E V + +G D TC + V+ T + + ++ +
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF-- 194
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQ 127
I R S + L IR+ + D G C++
Sbjct: 195 ---------GITWFSSEIAGRASFSGAR----NLVIRAAKITDAGRVWCELATGQGELDA 241
Query: 128 MAFLEVVI 135
++
Sbjct: 242 DRSSTILK 249
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 85.2 bits (211), Expect = 1e-20
Identities = 47/242 (19%), Positives = 82/242 (33%), Gaps = 52/242 (21%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
+ F P + ++ +++G A C G PT
Sbjct: 3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKA------------------EG----RPT-- 38
Query: 62 SAMKVAWIKA----DTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
+ W K +T ++ + L + R D G Y+C
Sbjct: 39 --PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR-------IVHGRKSRPDEGVYVC 89
Query: 118 QVNTNPM---TKQMAFLEV-VIPPDISSEETSGDMMVPEGGSAKLVCKA-KGYPTPKITW 172
V N + A LEV ++ D + D+MV G A + C+ +G+P P I+W
Sbjct: 90 -VARNYLGEAVSHDASLEVAILRDDFRQNPS--DVMVAVGEPAVMECQPPRGHPEPTISW 146
Query: 173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232
++ D + + ++ L +T +S+ G Y C+ N V S+ L
Sbjct: 147 KK-DGSPL------DDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELT 199
Query: 233 VH 234
V
Sbjct: 200 VL 201
Score = 44.0 bits (104), Expect = 9e-06
Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 42/140 (30%)
Query: 4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
V DF +V +A G A+ C G P +
Sbjct: 107 VAILRDDFRQNPSDVMVAVGEPAVMECQP------------------PRGH---PEPT-- 143
Query: 64 MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
++W K + + L I R+ D G Y+C TN
Sbjct: 144 --ISWKKDG---------SPLDDKDERITIRGG----KLMITYTRKSDAGKYVCVG-TNM 187
Query: 124 MTK---QMAFLEVVIPPDIS 140
+ + ++A L V+ P
Sbjct: 188 VGERESEVAELTVLERPSFV 207
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 82.2 bits (203), Expect = 2e-20
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
+ + PP I D++V +G A L CKA+G PTP I W + + + + P
Sbjct: 2 SLRQEDFPPRIVEH--PSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPR 58
Query: 189 SQKVFSVESEVLSL----TKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
S ++ + L + +R + G Y C+A N + VS L V
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108
Score = 34.0 bits (78), Expect = 0.012
Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 37/145 (25%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
+ F P + ++ +++G A C G PT +
Sbjct: 3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKA------------------EG----RPTPT 40
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVR--REDRGYYMCQV 119
+ W K + + + + + + + L I R R D G Y+C
Sbjct: 41 ----IEWYKGGER----VETDKDDPRSHRMLLPSG-SLFFLRIVHGRKSRPDEGVYVCVA 91
Query: 120 NTNPM---TKQMAFLEVVIPPDISS 141
N + A LEV
Sbjct: 92 -RNYLGEAVSHDASLEVAAAAHHHH 115
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 86.5 bits (214), Expect = 3e-20
Identities = 33/237 (13%), Positives = 64/237 (27%), Gaps = 61/237 (25%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
+ + + D G ++ S VT +KV W
Sbjct: 99 KELMMEVCKKIALSATDLKIQSTAE---GIQLYSFVT-------------YYVEDLKVNW 142
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP----- 123
+ I + R+ L I D+G Y+ ++ +
Sbjct: 143 SHNGSA---------IRYSDRVKTGV-TGEQIWLQINEPTPNDKGKYVMEL-FDGKTGHQ 191
Query: 124 ------------------MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165
KQ A E + + + EG + L C G
Sbjct: 192 KTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD--VVTIQEGKALNLTCNVWGD 249
Query: 166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAAN 219
P P+++W + + K + E+ ++ V+ ++ G Y + N
Sbjct: 250 PPPEVSWLK-NEKAL-----ASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 300
Score = 72.3 bits (177), Expect = 3e-15
Identities = 32/227 (14%), Positives = 59/227 (25%), Gaps = 61/227 (26%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F+ L + + + C V + + + W
Sbjct: 8 PHFVEYLSW-EVTGECNVLLKCKV--ANIKKET-----------------------HIVW 41
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
K E I+ + + TL I ++D G Y + + K
Sbjct: 42 YK---------DEREISVDEKHDFKDGIC---TLLITEFSKKDAGIYEVIL-KDDRGKDK 88
Query: 127 QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG----------YPTPKITWRRED 176
L ++ E + K+ A+G K+ W +
Sbjct: 89 SRLKLVDEAFKELMMEVC--KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-N 145
Query: 177 NKEIIVRSNPPSSQKVFSVESEVLSLT--KVTRSEMGAYQCIAANGV 221
I S + V E + L + T ++ G Y +G
Sbjct: 146 GSAI-----RYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK 187
Score = 62.6 bits (152), Expect = 8e-12
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSS 189
++ P V + L CK I W + D +EI
Sbjct: 2 IDPFTGPHFVEYL---SWEVTGECNVLLKCKVANIKKETHIVWYK-DEREI-----SVDE 52
Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
+ F L +T+ ++ + G Y+ I +
Sbjct: 53 KHDFKDGICTLLITEFSKKDAGIYEVILKDDR 84
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 82.8 bits (204), Expect = 7e-20
Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 9/147 (6%)
Query: 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP 151
+ + + + G Y C P A +++ PP + + ++S +
Sbjct: 41 LKEDALPGQKTEFKVDSDDQWGEYSCVFLPEP--MGTANIQLHGPPRVKAVKSS--EHIN 96
Query: 152 EGGSAKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--KVTRS 208
EG +A LVCK++ P W + + E N S+ S L +
Sbjct: 97 EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME 156
Query: 209 E-MGAYQCIAANGVPPTVSKRLMLHVH 234
G Y+C + + + L V
Sbjct: 157 ADPGQYRCNGTSSK-GSDQAIITLRVR 182
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 85.3 bits (210), Expect = 1e-19
Identities = 39/232 (16%), Positives = 61/232 (26%), Gaps = 39/232 (16%)
Query: 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
+ + + + A C + S S+ + + W
Sbjct: 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYS---------------TAHSAGLTLIWYWTRQ 57
Query: 74 KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLE 132
L + R+S L R D G Y C + NT +K LE
Sbjct: 58 DRDLEEPINFRLPENRISK-----EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLE 112
Query: 133 VVIPPDISSEETSG--DMMVPEGGSAKLVC-----KAKGYPTPKITWRREDNKEIIVRSN 185
VV + + E G ++ C P ITW
Sbjct: 113 VVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC--------Y 164
Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA---ANGVPPTVSKRLMLHVH 234
+ E LS S G Y C+ NG +++ L + V
Sbjct: 165 KIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVV 216
Score = 73.0 bits (178), Expect = 3e-15
Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 40/238 (16%)
Query: 21 AQGRDA-IFTCVVNNLGG-HRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA 78
D +TC++ N +V+ + V S + +I+ + +
Sbjct: 86 TLLNDTGNYTCMLRNTTYCSKVAFPLE---VVQKDSCFNSPMKLPVHKLYIEYGIQRITC 142
Query: 79 IH-EHVITNNARLSVT------------HNDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125
+ + ++ + ++T + L+ + G Y C V
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENG 202
Query: 126 KQ-----------MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA----KGYPTPKI 170
+ + + +PP I S G + C ++
Sbjct: 203 RTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEV 262
Query: 171 TWRR------EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA-YQCIAANGV 221
W + ++ + + S+ +++LS+ KVT ++ Y C A +
Sbjct: 263 WWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAK 320
Score = 42.2 bits (98), Expect = 8e-05
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 13/106 (12%)
Query: 141 SEETSGDMMVPEGGSAKLVC-----------KAKGYPTPKITWRREDNK-EIIVRSNPPS 188
+T + V E A++ C + W ++ N
Sbjct: 10 GLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRL 69
Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ S E +VL ++ G Y C+ N L V
Sbjct: 70 PENRISKEKDVLWFRPTLLNDTGNYTCMLRNTT-YCSKVAFPLEVV 114
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 82.6 bits (204), Expect = 2e-19
Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 49/214 (22%)
Query: 36 GGHRVSSSVTDTHVNTGGSIVFPTDSSA----MKVAWIKADTKAVLAIHEHVITNNARLS 91
G S+ +T I + + +KV W + I + R+
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH---------NGSAIRYSDRVK 51
Query: 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-----------------------TKQM 128
L I D+G Y+ ++ + KQ
Sbjct: 52 TGVTG-EQIWLQINEPTPNDKGKYVMEL-FDGKTGHQKTVDLSGQAYDEAYAEFQRLKQA 109
Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
A E + + + EG + L C G P P+++W + + K + +
Sbjct: 110 AIAEKNRARVL--GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKAL-----AQT 161
Query: 189 SQKVFSVESE---VLSLTKVTRSEMGAYQCIAAN 219
E+ ++ V+ ++ G Y + N
Sbjct: 162 DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 195
Score = 45.6 bits (108), Expect = 3e-06
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 18/88 (20%)
Query: 146 GDMMVPEGGSAKLVCKAKGY----------PTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
G + K+ A+G K+ W + I S + V
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAI-----RYSDRVKTGV 54
Query: 196 ESEVLSLT--KVTRSEMGAYQCIAANGV 221
E + L + T ++ G Y +G
Sbjct: 55 TGEQIWLQINEPTPNDKGKYVMELFDGK 82
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 83.2 bits (205), Expect = 2e-19
Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 23/138 (16%)
Query: 102 LNIRSVRREDRGYYMCQV-----NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSA 156
L +++ ++ + C Q L V+ P + + G+ PE
Sbjct: 144 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 203
Query: 157 KLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216
+C+A G P P++ ++ + + VTR G Y C
Sbjct: 204 TPMCQAWGNPLPELKCLKDGTFPL-----------------PIGESVTVTRDLEGTYLCR 246
Query: 217 AANGVPPTVSKRLMLHVH 234
A + V++ + ++V
Sbjct: 247 ARSTQ-GEVTREVTVNVL 263
Score = 50.1 bits (119), Expect = 1e-07
Identities = 22/147 (14%), Positives = 37/147 (25%), Gaps = 23/147 (15%)
Query: 93 THNDANTWTLNIR-SVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP 151
ND+ + ++ + E C V Q V I + V
Sbjct: 53 YGNDSFSAKASVSVTAEDEGTQRLTCAV-ILGNQSQETLQTVTIYSFPAPNVILTKPEVS 111
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
EG + C+A + + L K T + G
Sbjct: 112 EGTEVTVKCEAHPRAKVTLNG-----------------VPAQPLGPRAQLLLKATPEDNG 154
Query: 212 A-YQCIAANGVPPTV---SKRLMLHVH 234
+ C A V + ++ L V
Sbjct: 155 RSFSCSATLEVAGQLIHKNQTRELRVL 181
Score = 29.6 bits (66), Expect = 0.72
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 101 TLNIRSVRREDRGYYMCQ-VNTNPMTKQMAFLEVVIP 136
+V R+ G Y+C+ +T + + V+ P
Sbjct: 229 IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 82.5 bits (203), Expect = 7e-19
Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 11/142 (7%)
Query: 93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPE 152
+ G Y C + + ++ V P + + E
Sbjct: 50 EMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSS--IYVFVRDPAKLF--LVGLPLFGKE 105
Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE-MG 211
A + C + + D K + P+ +++ V R+
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSL------PTDLTFVPNPKAGITIKNVKRAYHRL 159
Query: 212 AYQCIAANGVPPTVSKRLMLHV 233
+C A S + L V
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLKV 181
Score = 80.9 bits (199), Expect = 2e-18
Identities = 37/242 (15%), Positives = 69/242 (28%), Gaps = 38/242 (15%)
Query: 17 NVTIAQGRDA-IFTCVVNNLGGHRVSSSVTD----------THVNTGGSIVFP---TDSS 62
A+ +TC +N + V D + TD
Sbjct: 60 IQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQ 119
Query: 63 AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122
+ + I+ D K+ + + + R R C +
Sbjct: 120 VSQYSLIECDGKS--------LPTDLTFVP---NPKAGITIKNVKRAYHRLCVRCAAQRD 168
Query: 123 --PMTKQMAFLEVV----IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRRE 175
+ L+V P +S ETS ++ +G + +VC K T W +
Sbjct: 169 GTWLHSDKFTLKVREAIKAIPVVSVPETS--HLLKKGDTFTVVCTIKDVSTSVNSMWLKM 226
Query: 176 DNKEI---IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232
+ + V+ N E L+++ + G + C A N + + L
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTF-GSANVTTTLK 285
Query: 233 VH 234
V
Sbjct: 286 VV 287
Score = 41.3 bits (96), Expect = 1e-04
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 17/91 (18%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
PP I ++ +++V G + L C + W + +V +
Sbjct: 12 PPSIHPAQS--ELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENK---------- 55
Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVS 226
K + G Y C +NG+ ++
Sbjct: 56 -KNEWIQEKAEATRTGTYTCSNSNGLTSSIY 85
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 80.1 bits (197), Expect = 2e-18
Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 43/221 (19%)
Query: 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
P + G DA C + + M++ W+ +
Sbjct: 10 PSGPILAMVGEDADLPCHLFP-----------------------TMSAETMELKWVSSSL 46
Query: 74 KAVLAIHEH----------VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
+ V+ ++ + A L I +V D G Y+C
Sbjct: 47 RQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGD 106
Query: 124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIV 182
++ A +E+ + S + + G L C++ G YP P+I W + I
Sbjct: 107 FYEK-ALVELKVAALGSDLHVD--VKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPT 163
Query: 183 RSNP--PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
P +++V + V+ + S C + +
Sbjct: 164 VEAPVVADGVGLYAVAASVI----MRGSSGEGVSCTIRSSL 200
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 79.7 bits (196), Expect = 2e-18
Identities = 34/232 (14%), Positives = 63/232 (27%), Gaps = 38/232 (16%)
Query: 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA 75
V G C + + ++ W +
Sbjct: 7 TQVPGFLGDSVTLPCYLQVPN---------------------MEVTHVSQLTWARHGESG 45
Query: 76 VLAIH----EHVITNNARLSVT----HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
+A+ + + RL + +L + +R ED G Y C T P +
Sbjct: 46 SMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSR 105
Query: 128 --MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRS 184
+L V+ P ++E + + C + G P +ITW +
Sbjct: 106 SVDIWLRVLAKPQNTAE--VQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQ 163
Query: 185 NPPSSQKVFSVESEVLSLTKVTRSEMGA-YQCIAAN-GVPPTVSKRLMLHVH 234
P +V S + L + G C + + L V+
Sbjct: 164 VPGFLSGTVTVTS-LWILV-PSSQVDGKQVTCKVEHESFEKPQLLTVSLTVY 213
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 79.7 bits (196), Expect = 5e-18
Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 14/225 (6%)
Query: 21 AQGRDA-IFTCVVNN-LGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA 78
G D + C N+ G V P D+ + + + T+
Sbjct: 58 LTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIF-LTEITEIT-- 114
Query: 79 IHEHVITNNARLSVTHNDAN-----TWTLNIRSVRREDRGYYMCQ--VNTNPMTKQMAFL 131
I V +++ + + + Y+C+ + + ++
Sbjct: 115 IPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYV 174
Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK-EIIVRSNPPSSQ 190
+ I+ + +V +G + L+C G W + +V
Sbjct: 175 YRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLL 234
Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSKRLMLHVH 234
+ +L + + G Y C V K + + V
Sbjct: 235 DMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVV 279
Score = 70.9 bits (173), Expect = 9e-15
Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 32/200 (16%)
Query: 40 VSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANT 99
V+ + +N + V T S + V W + + ++ + +
Sbjct: 3 VTPPGPELVLNVSSTFVL-TCSGSAPVVWERMSQE-----------PPQEMAKAQDGTFS 50
Query: 100 WTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIP----PDISSEETSGDMMVPEG 153
L + ++ D G Y C N + T + L + +P + ++ + + E
Sbjct: 51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEI 110
Query: 154 GSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAY 213
+ C+ P +T + + P Q+ F E +Y
Sbjct: 111 TEITIPCRVTD-PQLVVTLHEKKGDVAL--PVPYDHQRGF-----------SGIFEDRSY 156
Query: 214 QCIAANGVPPTVSKRLMLHV 233
C G S ++
Sbjct: 157 ICKTTIGDREVDSDAYYVYR 176
Score = 48.2 bits (114), Expect = 6e-07
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 15/102 (14%)
Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
+V+ P ++++ + L C + W R ++E
Sbjct: 1 LVVTPPGP------ELVLNVSSTFVLTCSGSA----PVVWER-MSQEPPQEMAKAQDGTF 49
Query: 193 FSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
SV L+LT +T + G Y C + +R L++
Sbjct: 50 SSV----LTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIF 87
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 80.1 bits (197), Expect = 7e-18
Identities = 38/235 (16%), Positives = 68/235 (28%), Gaps = 45/235 (19%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
+ +G C V + S + + W
Sbjct: 19 RFRGRHYKREFRLEGEPVALRC-----------PQVPYWLWASV--------SPRINLTW 59
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQ 127
K D+ + + D L + +ED G Y+C N + K
Sbjct: 60 HKNDSA-------RTVPGEEETRMWAQDG---ALWLLPALQEDSGTYVCTTRNASYCDKM 109
Query: 128 MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC-----KAKGYPTPKITWRREDNKEIIV 182
L V D S ++ S LVC + KI W + D+ +
Sbjct: 110 SIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK-DSLLL-- 166
Query: 183 RSNPPSSQKVFSVE-SEVLSLTKVTRSEMGAYQCIAAN---GVPPTVSKRLMLHV 233
++K SV + L + V + G Y+C+ G +++ + L +
Sbjct: 167 ---DKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI 218
Score = 67.4 bits (164), Expect = 2e-13
Identities = 41/248 (16%), Positives = 73/248 (29%), Gaps = 60/248 (24%)
Query: 21 AQGRDA-IFTCVVNNLGG-HRVSSSVT--------------DTHVNTGGSIV-------- 56
A D+ + C N ++S + + S V
Sbjct: 88 ALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSE 147
Query: 57 FPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYM 116
F D + +K+ W K D+ + +E ++ T L + V ED GYY
Sbjct: 148 FTRDKTDVKIQWYK-DSLLLDKDNEKFLSVR----------GTTHLLVHDVALEDAGYYR 196
Query: 117 CQVNTNPMTKQ-----MAFLEVV-----IPPDISSEETSGDMMVPEGGSAKLVCKA---K 163
C + +Q L + P I S + G + CK
Sbjct: 197 CVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLK--TISASLGSRLTIPCKVFLGT 254
Query: 164 GYPTPKITWRREDNKE---------IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA-Y 213
G P + W ++ + S+ + L VTR ++ +
Sbjct: 255 GTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDF 314
Query: 214 QCIAANGV 221
+C+ N +
Sbjct: 315 KCVVHNTL 322
Score = 53.5 bits (128), Expect = 1e-08
Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 12/95 (12%)
Query: 147 DMMVPEGGSAKLVCK-------AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEV 199
EG L C A P +TW + D+ R+ P + +
Sbjct: 27 REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSA----RTVPGEEETRMWAQDGA 82
Query: 200 LSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
L L + + G Y C N + L V
Sbjct: 83 LWLLPALQEDSGTYVCTTRNAS-YCDKMSIELRVF 116
Score = 44.7 bits (105), Expect = 1e-05
Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 28/134 (20%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P + PL+ ++ + G C V G T + W
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTG-----------------TPLTT------MLW 263
Query: 69 IKADTKAVLAIHEHV-ITNNARLSVTHNDANTW--TLNIRSVRREDRGY-YMCQVNTNPM 124
A+ + + + +T R + N+ N L V RED + C V N +
Sbjct: 264 WTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVV-HNTL 322
Query: 125 TKQMAFLEVVIPPD 138
+ Q V
Sbjct: 323 SFQTLRTTVKEHHH 336
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 76.0 bits (187), Expect = 2e-17
Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 17/134 (12%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
D G Y CQ ++ L V+ + + + EG + L C
Sbjct: 52 PSYRFKANNNDSGEYTCQTGQTSLSDP-VHLTVLFEWLVLQ---TPHLEFQEGETIMLRC 107
Query: 161 KAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ P K+T+ + + K FS S+ + S G Y C
Sbjct: 108 HSWKDKPLVKVTFFQ-NGKSQK-----------FSHLDPTFSIPQANHSHSGDYHCTGNI 155
Query: 220 GVPPTVSKRLMLHV 233
G SK + + V
Sbjct: 156 GYTLFSSKPVTITV 169
Score = 43.7 bits (103), Expect = 1e-05
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 18/100 (18%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFS 194
PP + + V + S L C+ P I W + I
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFH-NGNLI-------------P 47
Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
++ K ++ G Y C ++S + L V
Sbjct: 48 THTQPSYRFKANNNDSGEYTCQTGQT---SLSDPVHLTVL 84
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 78.7 bits (193), Expect = 2e-17
Identities = 34/226 (15%), Positives = 57/226 (25%), Gaps = 45/226 (19%)
Query: 26 AIFTCVVNNLGGHRVSSSVT--------------DTHVNTGGSIVF----PTDSSAMKVA 67
+ C V G V V + + I +
Sbjct: 103 RRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNIT 162
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
W K + + +I + + S + L I + ED G Y C V+ + + +
Sbjct: 163 WYKNN--------QELIIDGTKYSQ-----SGQNLIIHNPELEDSGRYDCYVHYDDVRIK 209
Query: 128 MAF-LEVVIPPDISSEE-------TSGDMMVPEGGSAKLVCKAKGYPTPK----ITWRRE 175
+ + + + V G A + C A I W
Sbjct: 210 NDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP 269
Query: 176 DNKEIIVRSNPPSSQKV-FSVESEVLSLTKVTRSEMGA-YQCIAAN 219
I + S + L VT +G Y C N
Sbjct: 270 SGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHN 315
Score = 72.2 bits (176), Expect = 4e-15
Identities = 23/124 (18%), Positives = 37/124 (29%), Gaps = 11/124 (8%)
Query: 101 TLNIRSVRREDRG-YYMCQV-NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKL 158
L I + D Y+C V N Q + P ET ++ + L
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETY-ELGTHDKYGIDL 148
Query: 159 VCK-AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA 217
C ITW + +N+E+ +S + L + + G Y C
Sbjct: 149 YCGILYAKHYNNITWYK-NNQEL------IIDGTKYSQSGQNLIIHNPELEDSGRYDCYV 201
Query: 218 ANGV 221
Sbjct: 202 HYDD 205
Score = 45.2 bits (106), Expect = 6e-06
Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 2/105 (1%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
+ P T + M G C + +DN +
Sbjct: 23 DSKWLNPSCMFGGT-MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP 81
Query: 191 KVFSVESEVLSLTKVTRSEMGA-YQCIAANGVPPTVSKRLMLHVH 234
V++ L + T ++ Y C V + H+
Sbjct: 82 LNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR 126
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 76.5 bits (188), Expect = 3e-17
Identities = 32/233 (13%), Positives = 61/233 (26%), Gaps = 61/233 (26%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
F V I + F L S KV +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKL-------------------------SGNAKVNY 37
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDAN-TWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
I +E I + + + + + ++ ED G Y Q+ +
Sbjct: 38 IF---------NEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL-QDGKATN 87
Query: 128 MAFLEVVIPPDISSEETSG------------------DMMVPEGGSAKLVCKAKGYPTP- 168
+ + +V ++ + V + L CK
Sbjct: 88 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKET 147
Query: 169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
I W + D +EI + F L +T+ ++ + G Y+ I +
Sbjct: 148 HIVWYK-DEREI-----SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 194
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 77.2 bits (189), Expect = 4e-17
Identities = 39/259 (15%), Positives = 76/259 (29%), Gaps = 63/259 (24%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P + + G + CVV V +V W
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHV-----------------------DRVDW 42
Query: 69 IKADTKAVLAIHEHVITNNARLS----------VTHNDANTWTLNIRSVRREDRGYYMCQ 118
+ + K + + +N + V N +L ++ V++ D G Y C+
Sbjct: 43 LFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCE 102
Query: 119 VNTNPMTKQM-AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP---KITWRR 174
+ + M +E+ + P+ D+ V G + ++ C + K+ W
Sbjct: 103 IRLKNESMVMKKPVELWVLPEEPR-----DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMF 157
Query: 175 ED--------------NKEIIVRSNPPSSQKVFSVESEV------LSLTKVTRSEMGAYQ 214
N + + + ++ + L V S+ G Y
Sbjct: 158 SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYT 217
Query: 215 CIAANGVPPTVSKRLMLHV 233
C G K ++LHV
Sbjct: 218 CSIYVG-KLESRKTIVLHV 235
Score = 45.6 bits (107), Expect = 4e-06
Identities = 25/175 (14%), Positives = 49/175 (28%), Gaps = 35/175 (20%)
Query: 15 LENVTIAQGRDA-IFTCVVNNLGGHRVSSSVTD----------THVNTGGSIVFP----- 58
L++V A D I+TC + V + V G +
Sbjct: 88 LQDVQKA---DEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQS 144
Query: 59 -TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA--------------NTWTLN 103
+ KV W+ + +N R + N ++
Sbjct: 145 TEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIK 204
Query: 104 IRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKL 158
+++V+ D+G Y C + + + + + D S +G L
Sbjct: 205 LQTVKESDQGIYTCSI-YVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQGIL 258
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 77.2 bits (189), Expect = 1e-16
Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 23/139 (16%)
Query: 101 TLNIRSVRREDRGYYMCQV-----NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
L +++ ++ + C Q L V+ P + + G+ PE
Sbjct: 328 QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQ 387
Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
+C+A G P P++ ++ + + VTR G Y C
Sbjct: 388 QTPMCQAWGNPLPELKCLKDGTFPL-----------------PIGESVTVTRDLEGTYLC 430
Query: 216 IAANGVPPTVSKRLMLHVH 234
A + V++ + ++V
Sbjct: 431 RARSTQ-GEVTREVTVNVL 448
Score = 54.1 bits (129), Expect = 9e-09
Identities = 35/229 (15%), Positives = 60/229 (26%), Gaps = 35/229 (15%)
Query: 25 DAIFTCVV-NNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA----- 78
A F+C +L + + + V P + +
Sbjct: 154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213
Query: 79 -------IHEHVITNNARLS--VTHNDANTWTLNIRSVRREDRGYYMCQ-VNTNPMTKQM 128
H+ + RL+ VT+ + + SV ED G Q
Sbjct: 214 GLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE 273
Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
V I + V EG + C+A +P K+T + + R+
Sbjct: 274 TLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEA--HPRAKVTLNGVPAQPLGPRAQ--- 328
Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKR---LMLHVH 234
L L ++ C A V + + L V
Sbjct: 329 -----------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 366
Score = 52.6 bits (125), Expect = 3e-08
Identities = 22/242 (9%), Positives = 52/242 (21%), Gaps = 46/242 (19%)
Query: 25 DAIFTCVVNNLGG--------------HRVSSSVTDTHVNTGGSIVFPTDSSA------M 64
D+ C N G RV + + G ++ +
Sbjct: 60 DSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-- 122
V ++ E + A T + R + C+ +
Sbjct: 120 TVVLLR---------GEKELKRE---PAVGEPAEV-TTTVLVRRDHHGANFSCRTELDLR 166
Query: 123 ------PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRRE 175
+ + + ++ +VC G +P +
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLA 226
Query: 176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235
+ + NP + S ++ C G + + ++
Sbjct: 227 LGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILG-NQSQETLQTVTIYS 282
Query: 236 TY 237
Sbjct: 283 FP 284
Score = 49.1 bits (116), Expect = 4e-07
Identities = 16/136 (11%), Positives = 28/136 (20%), Gaps = 10/136 (7%)
Query: 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMV 150
++ MC N V E
Sbjct: 39 KKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQ 98
Query: 151 PEGGSAKLVCKAKG---YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
P G + L C+ +G + R KE+ +V ++
Sbjct: 99 PVGKNLTLRCQVEGGAPRANLTVVLLR-GEKELKREPAVGEPAEV------TTTVLVRRD 151
Query: 208 SEMGAYQCIAANGVPP 223
+ C + P
Sbjct: 152 HHGANFSCRTELDLRP 167
Score = 41.0 bits (95), Expect = 2e-04
Identities = 10/88 (11%), Positives = 22/88 (25%), Gaps = 12/88 (13%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+++P GGS + C + K+ ++
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGN-----------NRKVYELSN 56
Query: 207 RSEMGAYQCIAANGVPPTVSKRLMLHVH 234
E C + + + L V+
Sbjct: 57 VQEDSQPMCYSNCPD-GQSTAKTFLTVY 83
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 74.6 bits (183), Expect = 1e-16
Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 35/214 (16%)
Query: 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV 76
+VT A +C N V + + ++ W K + K V
Sbjct: 3 HVTKEVKEVATLSCGHN----------------------VSVEELAQTRIYWQK-EKKMV 39
Query: 77 LAIHEHVITNNARLS--VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV- 133
L + + + N ++ I ++R D G Y C V
Sbjct: 40 LTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAE 99
Query: 134 --VIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPP--S 188
+ + D +P +++C G +P P ++W + + +
Sbjct: 100 VTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDP 159
Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222
++++V S++ + ++ C+ G
Sbjct: 160 ETELYAVSSKL----DFNMTTNHSFMCLIKYGHL 189
Score = 30.7 bits (69), Expect = 0.24
Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 150 VPEGGSAKLVCK----AKGYPTPKITWRREDNKEIIVRSNPPSSQK------VFSVESEV 199
A L C + +I W++E + + S + +F + + +
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 200 -LSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ + + S+ G Y+C+ + + V
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEV 100
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 73.8 bits (181), Expect = 2e-16
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 17/134 (12%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
+ I + D G Y CQ LEV I + + E L C
Sbjct: 55 SYFIDAATVNDSGEYRCQT-NLSTLSDPVQLEVHIGWLLLQAPRW---VFKEEDPIHLRC 110
Query: 161 KAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ K+T+ + + K+ + + + K T + G+Y C
Sbjct: 111 HSWKNTALHKVTYLQ-NGKDR-----------KYFHHNSDFHIPKATLKDSGSYFCRGLV 158
Query: 220 GVPPTVSKRLMLHV 233
G S+ + + +
Sbjct: 159 GSKNVSSETVNITI 172
Score = 39.9 bits (93), Expect = 2e-04
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 16/85 (18%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
V E S L C+ P T + I S ++ + T ++
Sbjct: 19 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLI-------------SSQASSYFIDAATVND 65
Query: 210 MGAYQCIAANGVPPTVSKRLMLHVH 234
G Y+C T+S + L VH
Sbjct: 66 SGEYRCQTNLS---TLSDPVQLEVH 87
Score = 29.5 bits (66), Expect = 0.70
Identities = 10/100 (10%), Positives = 29/100 (29%), Gaps = 24/100 (24%)
Query: 40 VSSSVTDTHVNTGGSIVF----PTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN 95
+ I +++ KV +++ N H+
Sbjct: 91 LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ---------------NGKDRKYFHH 135
Query: 96 DANTWTLNIRSVRREDRGYYMCQV--NTNPMTKQMAFLEV 133
++ +I +D G Y C+ + ++ + + +
Sbjct: 136 NS---DFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 73.8 bits (181), Expect = 2e-16
Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 29/187 (15%)
Query: 42 SSVTDTHVNTGGSIVFPTDSSAMK----VAWIKADTKAVLAIHEH---VITNNARLSVTH 94
SV + + TG ++ + + W+ + +L + + +
Sbjct: 4 QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVD 63
Query: 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
D L I +V +EDRG Y ++ + +EV S M+ E
Sbjct: 64 LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMV-------SKPMIYWECS 116
Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
+A L C+ ++ + +++ + ++
Sbjct: 117 NATLTCEVLEGTDVELKLYQGKE---------------HLRSLRQKTMSYQWTNLRAPFK 161
Query: 215 CIAANGV 221
C A N V
Sbjct: 162 CKAVNRV 168
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 75.5 bits (185), Expect = 2e-16
Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 29/182 (15%)
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNP 123
+ W K D+ + ++ + + L + ED G+Y C V N++
Sbjct: 37 TITWYKDDS-------KTPVSTEQASRIHQHKE---KLWFVPAKVEDSGHYYCVVRNSSY 86
Query: 124 MTKQMAFLEVV--IPPDISSEETSGDMMVPEGGSAKLVC------KAKGYPTPKITWRRE 175
+ + V P + + +P G LVC K + PK+ W ++
Sbjct: 87 CLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKD 146
Query: 176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN---GVPPTVSKRLMLH 232
FS + L + V G Y C A+ G +++ +
Sbjct: 147 CKP-------LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199
Query: 233 VH 234
Sbjct: 200 TL 201
Score = 72.4 bits (177), Expect = 3e-15
Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 25/164 (15%)
Query: 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV----------IPPDISSEE 143
H L + +V + RG Y C + + KQ V+ P I S
Sbjct: 156 HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSP- 214
Query: 144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE----- 198
+ M V G +L+C G + W+ N +I +P + +SVE+
Sbjct: 215 ANETMEVDLGSQIQLICNVTGQLSDIAYWKW--NGSVIDEDDPVLGEDYYSVENPANKRR 272
Query: 199 -----VLSLTKVTRSEM-GAYQCIAANGVPPTVSKRLMLHVHCT 236
VL+++++ + C A N + + L T
Sbjct: 273 STLITVLNISEIESRFYKHPFTCFAKNTH-GIDAAYIQLIYPVT 315
Score = 48.2 bits (114), Expect = 6e-07
Identities = 13/100 (13%), Positives = 24/100 (24%), Gaps = 6/100 (6%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFS 194
E ++ C ITW ++D+K +
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPV----STEQASRIH 58
Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
E L + G Y C+ N + ++
Sbjct: 59 QHKEKLWFVPAKVEDSGHYYCVVRNSS-YCLRIKISAKFV 97
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 73.0 bits (179), Expect = 3e-16
Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 17/135 (12%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
+LNI + + ED G Y CQ ++ + + + V EG L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEV----VMEGQPLFLRC 107
Query: 161 KAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ K+ + + D + + + E+ +S+T T + G Y C
Sbjct: 108 HGWRNWDVYKVIYYK-DGEALK-----------YWYENHNISITNATVEDSGTYYCTGKV 155
Query: 220 GVPPTVSKRLMLHVH 234
S+ L + V
Sbjct: 156 WQLDYESEPLNITVI 170
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 70.6 bits (173), Expect = 3e-16
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 11/105 (10%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSS 189
L P + + E V G +C AK P + W R N ++ R+ +
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG 62
Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+L++ V S+ G Y C +N LHV
Sbjct: 63 ---------ILTIRNVQPSDAGTYVCTGSNMF-AMDQGTATLHVQ 97
Score = 36.3 bits (84), Expect = 0.001
Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 41/123 (33%)
Query: 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA 71
+ + ++ G D F C T + W +
Sbjct: 14 VEEQRSQSVRPGADVTFICTAK--SKSPA-----------------YT------LVWTRL 48
Query: 72 DTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF 130
N +L D N L IR+V+ D G Y+C N M + A
Sbjct: 49 H--------------NGKLPSRAMDFNG-ILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT 93
Query: 131 LEV 133
L V
Sbjct: 94 LHV 96
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 75.8 bits (185), Expect = 5e-16
Identities = 34/234 (14%), Positives = 64/234 (27%), Gaps = 19/234 (8%)
Query: 22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-----MKVAWIKADTKAV 76
R F + G + + V+ G ++ K + + V
Sbjct: 97 NSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV 156
Query: 77 LAIHEHVIT-----NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF 130
L I RL + +++ I +R D G Y+CQ + + K+ A
Sbjct: 157 LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216
Query: 131 LEVVIPPDISSEETSGDMMVPE-------GGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
L+V+ P E + AK +C+ + K
Sbjct: 217 LQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNT-LGKRAPAF 275
Query: 184 SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237
S + +T + + + G Y C A + +
Sbjct: 276 EGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVN 329
Score = 74.6 bits (182), Expect = 1e-15
Identities = 37/239 (15%), Positives = 72/239 (30%), Gaps = 23/239 (9%)
Query: 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFP----TDSSAMKVAWIKA 71
+ Q I + + S T G S+ S W
Sbjct: 310 HSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLW 369
Query: 72 DTKAVLAIHEHVITN-------NARLSVTHNDAN-TWTLNIRSVRREDRGYYMCQVNTNP 123
+ V + RLS+ N T+T+ + + D G+Y C N +
Sbjct: 370 EGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDT 429
Query: 124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC----KAKGYPTPKITWRREDNKE 179
+ + ++++ + + G + K+ C K Y W +
Sbjct: 430 LWRTTVEIKIIEGEPNLKVPGN--VTAVLGETLKVPCHFPCKFSSYEKYWCKWNN-TGCQ 486
Query: 180 IIVRSNPPSSQKVFSVESE----VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ + S+ + + L+L VTR++ G Y C G + + + V
Sbjct: 487 ALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE 545
Score = 72.3 bits (176), Expect = 6e-15
Identities = 35/261 (13%), Positives = 85/261 (32%), Gaps = 39/261 (14%)
Query: 17 NVTIAQGR--DA-IFTCVVNNLGGHRVSS--------SVTDTHVNTGGSIVFPTDSSAMK 65
+V I Q R DA + C + + + + GS+ F
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEV 245
Query: 66 VAWIKADTKAVLAIHEHVIT---------NNARLSVTHNDAN-TWTLNIRSVRREDRGYY 115
K + + V+ R+ + D + ++++ I +R+ED G Y
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY 305
Query: 116 MCQVNTNPMTKQMAFLEVV---IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
+C +++ ++ + ++ + + + + + G S ++C + I +
Sbjct: 306 LCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY 365
Query: 173 ------RREDNKEIIVRSNPPSSQKV---FSVESE------VLSLTKVTRSEMGAYQCIA 217
+ ++V S + S+ E + L ++T + G Y C+
Sbjct: 366 WCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT 425
Query: 218 ANGVPPTVSKRLMLHVHCTYL 238
+ + + L
Sbjct: 426 NGDTLWRTTVEIKIIEGEPNL 446
Score = 62.3 bits (150), Expect = 2e-11
Identities = 24/201 (11%), Positives = 62/201 (30%), Gaps = 26/201 (12%)
Query: 46 DTHVNTGGSIVFP------TDSSAMKVAWIKADTKAVLAI-----HEHVITNNARLSVTH 94
+ + G S+ + + + W + + R ++T+
Sbjct: 9 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68
Query: 95 NDAN-TWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEG 153
N T+ +NI + ++D G Y C + + + + + V G
Sbjct: 69 FPENGTFVVNIAQLSQDDSGRYKCGL-GINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLG 127
Query: 154 GSAKLVC--KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS-----------VESEVL 200
+ + C K + K +++ ++V + ++ +
Sbjct: 128 RTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSV 187
Query: 201 SLTKVTRSEMGAYQCIAANGV 221
+ ++ S+ G Y C A +
Sbjct: 188 VINQLRLSDAGQYLCQAGDDS 208
Score = 59.2 bits (142), Expect = 2e-10
Identities = 28/178 (15%), Positives = 52/178 (29%), Gaps = 26/178 (14%)
Query: 18 VTI--AQGRDA-IFTCVVNNLGGHRVSSSV------------TDTHVNTGGSI----VFP 58
V + RDA + C+ N R + + + G ++ FP
Sbjct: 408 VILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFP 467
Query: 59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ 118
S+ + W K + A+ + ++ +L + V R D G+Y C
Sbjct: 468 CKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCG 527
Query: 119 VNTNPMTKQM--AFLEVVIPPDISSEETSGDMMVPEGG-----SAKLVCKAKGYPTPK 169
V + ++ V S + S S + K P+
Sbjct: 528 VKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDPR 585
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 73.1 bits (179), Expect = 2e-15
Identities = 31/233 (13%), Positives = 60/233 (25%), Gaps = 61/233 (26%)
Query: 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK 65
G +P + NV F C +
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDKMT---------------------------PKSE 33
Query: 66 VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125
+W K ++ RL V N + + + +D G Y C V T+
Sbjct: 34 FSWSKDYVS---------TEDSPRLEVESKG-NKTKMTFKDLGMDDLGIYSCDV-TDTDG 82
Query: 126 KQMAFLEVVIPPDISSEETSG------------DMMVPEGGSAKLVCKA-KGYPTPKITW 172
++L + + + E G + +A K K+ +
Sbjct: 83 IASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNY 142
Query: 173 RREDNKEIIVRSNPPSSQKVFSVESEV----LSLTKVTRSEMGAYQCIAANGV 221
+ KEI + ++ + + K+ + G Y +G
Sbjct: 143 IF-NEKEI-----FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK 189
Score = 70.8 bits (173), Expect = 1e-14
Identities = 35/248 (14%), Positives = 66/248 (26%), Gaps = 64/248 (25%)
Query: 21 AQGRDA-IFTCVVNNLGGHRVSSSVT-------------------------DTHVNTGGS 54
D I++C V + G S + + G
Sbjct: 65 LGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQ 124
Query: 55 IVF----PTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH-NDANTWTLNIRSVRR 109
+ F S KV +I + + I + + + + + ++
Sbjct: 125 VRFWMQAEKLSGNAKVNYIFNEKE---------IFEGPKYKMHIDRNTGIIEMFMEKLQD 175
Query: 110 EDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEETSG----------------DMMVPE 152
ED G Y Q+ + L + + E V
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG 235
Query: 153 GGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
+ L CK I W + D +EI + F L +T+ ++ + G
Sbjct: 236 ECNVLLKCKVANIKKETHIVWYK-DEREI-----SVDEKHDFKDGICTLLITEFSKKDAG 289
Query: 212 AYQCIAAN 219
Y+ I +
Sbjct: 290 IYEVILKD 297
Score = 50.4 bits (120), Expect = 1e-07
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
I P +E ++ S C P + +W + D S +
Sbjct: 2 IDPFT--KEVVVNVDDDGVISLNFECDK-MTPKSEFSWSK-DYVST------EDSPR-LE 50
Query: 195 VESE----VLSLTKVTRSEMGAYQCIAANGVPPTVSKRL 229
VES+ ++ + ++G Y C + S +
Sbjct: 51 VESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLI 89
Score = 36.9 bits (85), Expect = 0.003
Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 39/133 (29%)
Query: 3 PVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS 62
+R P F+ L + + + + C V + + +
Sbjct: 217 WIRKQGPHFVEYL-SWEVTGECNVLLKCKVA---NIKKETHIV----------------- 255
Query: 63 AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122
W K + I+ + + TL I ++D G Y + +
Sbjct: 256 -----WYKDE---------REISVDEKHDFKDGIC---TLLITEFSKKDAGIYEVIL-KD 297
Query: 123 PMTKQMAFLEVVI 135
K + L++V
Sbjct: 298 DRGKDKSRLKLVD 310
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 70.8 bits (173), Expect = 2e-15
Identities = 29/194 (14%), Positives = 57/194 (29%), Gaps = 27/194 (13%)
Query: 40 VSSSVTDTHVNTGGSIVFP----TDSSAMKVAWIKADTKAVLAI-----HEHVITNNARL 90
+S + + G S+ P + W+ +T + + N +
Sbjct: 1 MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQ 60
Query: 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-LEVVIPPDISSEETSGDMM 149
N +++L + +++ ED G Y Q++T K ++ L ++ +
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLF 120
Query: 150 VPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
L C + W N L+++ R
Sbjct: 121 QNMTCELHLTCSVEDADDNVSFRWEALGN---------------TLSSQPNLTVSWDPRI 165
Query: 209 EM-GAYQCIAANGV 221
Y CIA N V
Sbjct: 166 SSEQDYTCIAENAV 179
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 71.4 bits (174), Expect = 3e-15
Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 38/240 (15%)
Query: 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA 75
V + +G+ I C + + G+ ++A +
Sbjct: 8 PLVEVMRGKSVILDCTPTGTHD---HYMLEWFLTDRSGARP--------RLASAEMQGSE 56
Query: 76 VLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEV 133
+ + + + L + + D Y+C V + A L V
Sbjct: 57 LQVTMHDTRGRSPPYQL----DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
Query: 134 VIPPD--ISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRRED----------NKEI 180
P+ S ++ + C ++ G P PKITW R +
Sbjct: 113 FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172
Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA-YQCIAANGVPP-----TVSKRLMLHVH 234
+ + + S+ S L L + + + A + C A +P S L +H
Sbjct: 173 MTSRTVREASGLLSLTS-TLYLR-LRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 68.1 bits (167), Expect = 4e-15
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
+ + P I+ + G S ++ C A G P P+I W + DN+ + S
Sbjct: 5 VLERVAPTITGNLE--NQTTSIGESIEVSCTASGNPPPQIMWFK-DNETL-----VEDSG 56
Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
V + L++ +V + + G Y C A + +
Sbjct: 57 IVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 87
Score = 50.0 bits (120), Expect = 2e-08
Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 41/137 (29%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P LEN T + G +C +G P ++ W
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTA------------------SG----NPPP----QIMW 44
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
K + + ++ + + + L IR VR+ED G Y CQ + + K
Sbjct: 45 FKDN---------ETLVEDSGIVLKDGNR---NLTIRRVRKEDEGLYTCQA-CSVLGCAK 91
Query: 127 QMAFLEVVIPPDISSEE 143
AF + + ++ E
Sbjct: 92 VEAFFIIEGAQEKTNLE 108
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 71.1 bits (174), Expect = 6e-15
Identities = 29/153 (18%), Positives = 40/153 (26%), Gaps = 15/153 (9%)
Query: 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEET 144
N H ++N L I G Y C + T + V
Sbjct: 120 NGKAFKFFHWNSN---LTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNA 176
Query: 145 SGDMMVPEGGSAKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT 203
S + EG L C+ K P + +S + +
Sbjct: 177 SVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE--------YQIL 228
Query: 204 KVTRSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
R + G Y C AA G S L L V
Sbjct: 229 TARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
Score = 70.3 bits (172), Expect = 1e-14
Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
+ I S D G Y CQ + + LE+ + + + EG L C
Sbjct: 49 SYRITSASVNDSGEYRCQRGLSGRSD-PIQLEIHRGWLLLQVSSR---VFTEGEPLALRC 104
Query: 161 KAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
A + + R + K F + L++ K S G Y C
Sbjct: 105 HAWKDKLVYNVLYYR-NGKAFK-----------FFHWNSNLTILKTNISHNGTYHCSGMG 152
Query: 220 GVPPTVSKRLMLHVH 234
S + + V
Sbjct: 153 KH-RYTSAGISVTVK 166
Score = 41.1 bits (96), Expect = 1e-04
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 18/86 (20%)
Query: 150 VPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
V + + L C+ P W + + +T + +
Sbjct: 13 VFQEETVTLHCEVLHLPGSSSTQWFL-NGTAT-------------QTSTPSYRITSASVN 58
Query: 209 EMGAYQCIAANGVPPTVSKRLMLHVH 234
+ G Y+C S + L +H
Sbjct: 59 DSGEYRCQRGLS---GRSDPIQLEIH 81
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 69.9 bits (171), Expect = 7e-15
Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 17/134 (12%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
+ I + +D G Y CQ + ++ LEV I + + E L C
Sbjct: 55 SYFIDAATVDDSGEYRCQTQLSTLSDP-VQLEVHIGWLLLQAPRW---VFKEEDPIHLRC 110
Query: 161 KAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+ K+T+ + + K + + + K T + G+Y C
Sbjct: 111 HSWKNTALHKVTYLQ-NGKGRK-----------YFHHNSDFYIPKATLKDSGSYFCRGLV 158
Query: 220 GVPPTVSKRLMLHV 233
G S+ + + +
Sbjct: 159 GSKNVSSETVQITI 172
Score = 40.2 bits (94), Expect = 2e-04
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 16/85 (18%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
V E S L C+ P + T + I S ++ + T +
Sbjct: 19 VLEKDSVTLKCQGAYSPEDQSTQWFHNESLI-------------SSQASSYFIDAATVDD 65
Query: 210 MGAYQCIAANGVPPTVSKRLMLHVH 234
G Y+C T+S + L VH
Sbjct: 66 SGEYRCQTQLS---TLSDPVQLEVH 87
Score = 31.0 bits (70), Expect = 0.24
Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV--NTNPMTKQMAFLEVVIPPDISS 141
N H+++ I +D G Y C+ + ++ + + + +S+
Sbjct: 126 NGKGRKYFHHNS---DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 72.1 bits (177), Expect = 7e-15
Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 10/123 (8%)
Query: 112 RGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171
+G + + + + V EG + + VC+A G P P I
Sbjct: 364 QGKEFKDFPDVLLPNYFTC-----RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAIL 418
Query: 172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231
W + +SN ++ L + + G Y CIAAN S L
Sbjct: 419 WLSPRKHLVSAKSNG----RLTVFPDGTLEVRYAQVQDNGTYLCIAANAG-GNDSMPAHL 473
Query: 232 HVH 234
HV
Sbjct: 474 HVR 476
Score = 37.8 bits (88), Expect = 0.002
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 20/101 (19%)
Query: 40 VSSSVTDTHVNTGGSIVFP---TDSSAMKVAWIKADTKAVLAIHEHVITN--NARLSVTH 94
V+ G ++ F + W+ +H+++ N RL+V
Sbjct: 388 RDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPR--------KHLVSAKSNGRLTVFP 439
Query: 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEV 133
+ TL +R + +D G Y+C N A L V
Sbjct: 440 DG----TLEVRYAQVQDNGTYLCIA-ANAGGNDSMPAHLHV 475
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 69.8 bits (170), Expect = 9e-15
Identities = 38/203 (18%), Positives = 70/203 (34%), Gaps = 24/203 (11%)
Query: 44 VTDTHVNTGGSIVFP---TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTW 100
V N ++V P + S+ V+ + + I+ + +
Sbjct: 16 VVYITENKNKTVVIPCLGSISNL-NVSLCARYPEKRFVPDGNRISWD----------SKK 64
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQ-MAFLEVVIPPDISS--EETSGDMMVPEGGSAK 157
I S G C+ N + Q + ++ VV+ I S + + G
Sbjct: 65 GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLV 124
Query: 158 LVCKAKGYPTPKITWR------REDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
L C A+ I + + +K+++ R S L++ VTRS+ G
Sbjct: 125 LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG 184
Query: 212 AYQCIAANGVPPTVSKRLMLHVH 234
Y C A++G+ T + VH
Sbjct: 185 LYTCAASSGL-MTKKNSTFVRVH 206
Score = 39.4 bits (91), Expect = 4e-04
Identities = 21/131 (16%), Positives = 36/131 (27%), Gaps = 21/131 (16%)
Query: 28 FTCVVNNLGGHRVSSSVT-----------------DTHVNTGGSIVFP---TDSSAMKVA 67
C S ++ G +V + +
Sbjct: 79 VFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGID 138
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
+ + + V + S + TL I V R D+G Y C ++ MTK+
Sbjct: 139 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 198
Query: 128 M-AFLEVVIPP 137
F+ V P
Sbjct: 199 NSTFVRVHEDP 209
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 66.6 bits (163), Expect = 1e-14
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
PP I + + + G+A L CKA G P P I+W + + P +
Sbjct: 8 PPII--LQGPANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTF-----PGRDPRATIQ 59
Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN 219
E L + + S+ G Y C+A +
Sbjct: 60 EQGTLQIKNLRISDTGTYTCVATS 83
Score = 45.5 bits (108), Expect = 6e-07
Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 39/126 (30%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P L N T+A A+ C G P ++W
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKAT---GD-------------------PLPV----ISW 42
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQ 127
+K + R ++ TL I+++R D G Y C +++ T
Sbjct: 43 LKEGFT--------FPGRDPRATIQEQG----TLQIKNLRISDTGTYTCVATSSSGETSW 90
Query: 128 MAFLEV 133
A L+V
Sbjct: 91 SAVLDV 96
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 66.3 bits (162), Expect = 1e-14
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 16/102 (15%)
Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
+ + E V GG+ L C+ P+P+I W + D + + +P
Sbjct: 7 GLEEVQLVVEPE--GGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPLPPSP------ 57
Query: 193 FSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSKRLMLHV 233
VL L ++ + G Y C+A + P S+ + + +
Sbjct: 58 ------VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 38.5 bits (90), Expect = 2e-04
Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 50/133 (37%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
E + E +A G TC V P+ +
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVP---AQ-------------------PSPQ----IH 43
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--- 124
W+K + L + + L + + +D+G Y C T+
Sbjct: 44 WMK---------------DGVPLPLPPSP----VLILPEIGPQDQGTYSCVA-THSSHGP 83
Query: 125 -TKQMAFLEVVIP 136
+ + ++ P
Sbjct: 84 QESRAVSISIIEP 96
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 66.7 bits (163), Expect = 2e-14
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
E P + V EG S KL C+ P PK+ W+R +N+ +
Sbjct: 5 HHHHSHEHKRAPMFIYKPQ--SKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMV---QF 58
Query: 186 PPSSQKVFSVESEVLSL--TKVTRSEMGAYQCIAAN 219
++ + ++L V + + G Y A N
Sbjct: 59 NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVN 94
Score = 52.8 bits (127), Expect = 2e-09
Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 35/133 (26%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F+Y ++ + +G C ++ P K+ W
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQIS---AI-------------------PP----PKLFW 49
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ-VNTNPMTKQ 127
+ + E V N R+S+ ++ TL I+ V ++D G+Y VN +T
Sbjct: 50 KRNN--------EMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTC 101
Query: 128 MAFLEVVIPPDIS 140
L+V P+ +
Sbjct: 102 NTRLDVTARPNQT 114
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 68.0 bits (166), Expect = 2e-14
Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 37/181 (20%)
Query: 52 GGSIVFPTDSSAMK-----VAWIKADTKAVLA---IHEHVITNNARLSVTHNDANTWTLN 103
G I S M + W K K +A + + N TL
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN----GTLK 69
Query: 104 IRSVRREDRGYYMCQV---NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
I+ ++ +D+ Y + + +++ L++ S + + L C
Sbjct: 70 IKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-------SKPKISWTCINTTLTC 122
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG 220
+ P++ + D K + S+ + K T S ++C A N
Sbjct: 123 EVMNGTDPELNLYQ-DGKHL--------------KLSQRVITHKWTTSLSAKFKCTAGNK 167
Query: 221 V 221
V
Sbjct: 168 V 168
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 65.4 bits (160), Expect = 3e-14
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
+ + P SS D V EG L C +G P P+ITW + + I ++
Sbjct: 6 SGMEVAPSFSSVLK--DCAVIEGQDFVLQCSVRGTPVPRITWLL-NGQPI------QYAR 56
Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
L + + G Y C+A N +
Sbjct: 57 STCEAGVAELHIQDALPEDHGTYTCLAENAL 87
Score = 39.2 bits (92), Expect = 1e-04
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 40/116 (34%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F L++ + +G+D + C V G P ++ W
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVR---GT-------------------PV----PRITW 45
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
+ I +A L+I+ ED G Y C N +
Sbjct: 46 LLNG---------QPIQYARS----TCEAGVAELHIQDALPEDHGTYTCLA-ENAL 87
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 65.4 bits (160), Expect = 3e-14
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 15/98 (15%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
I E T + G + L C A G P P W + + + +
Sbjct: 3 KLQICVEPT--SQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPL-----THET------ 48
Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
++ + V G Y C N SK++ + +
Sbjct: 49 -KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85
Score = 36.2 bits (84), Expect = 0.001
Identities = 16/132 (12%), Positives = 26/132 (19%), Gaps = 46/132 (34%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
+ + + G + CV G P
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVA------------------VG----SPIPH----YQ 36
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTK 126
W K N L+ + V E +G Y C V N
Sbjct: 37 WFK---------------NELPLT----HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQD 77
Query: 127 QMAFLEVVIPPD 138
++ +
Sbjct: 78 SKKVEIIIDELN 89
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 65.5 bits (160), Expect = 5e-14
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
P + GD+ V EG ++ CK G PTP ++W+ D K + P S+ K+
Sbjct: 8 FRPHFL--QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPV----RPDSAHKMLV 60
Query: 195 VESEVLSLT--KVTRSEMGAYQCIAAN 219
E+ V SL VT + G Y CIA N
Sbjct: 61 RENGVHSLIIEPVTSRDAGIYTCIATN 87
Score = 51.2 bits (123), Expect = 8e-09
Identities = 27/143 (18%), Positives = 42/143 (29%), Gaps = 41/143 (28%)
Query: 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK 65
GF P FL ++T+ +G+ C V +G PT
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKV------------------SG----LPTP----D 40
Query: 66 VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM- 124
++W + ++ + + +L I V D G Y C TN
Sbjct: 41 LSWQLDG---------KPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA-TNRAG 90
Query: 125 -TKQMAFLEVVIPPDISSEETSG 146
L V S +SG
Sbjct: 91 QNSFSLELVVAAKE---SGPSSG 110
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 64.6 bits (158), Expect = 6e-14
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE----VLSL 202
D V EG + + +G P P ++W R + + + Q+ F+ E+E L +
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPV------RPDQRRFAEEAEGGLCRLRI 66
Query: 203 TKVTRSEMGAYQCIAAN 219
R + G Y C A N
Sbjct: 67 LAAERGDAGFYTCKAVN 83
Score = 50.4 bits (121), Expect = 1e-08
Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 38/127 (29%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F L + ++ +G+D I + V G P V+W
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRV------------------QG----EPK----PVVSW 39
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
++ + + R + L I + R D G+Y C+ N +
Sbjct: 40 LRNR---------QPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKA-VNEYGARQ 89
Query: 127 QMAFLEV 133
A LEV
Sbjct: 90 CEARLEV 96
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 65.6 bits (160), Expect = 1e-13
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 14/124 (11%)
Query: 103 NIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISS----EETSGDMMVPEGGSAKL 158
+ + +N N + + AFLE V +T DM V EG +A+
Sbjct: 3 GMSGRKASGSSPTSP-INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARF 61
Query: 159 VCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQC 215
CK +GYP P++ W + D+ + S + E L++++V + Y C
Sbjct: 62 DCKVEGYPDPEVMWFK-DDNPV-----KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 216 IAAN 219
A N
Sbjct: 116 KAVN 119
Score = 52.9 bits (127), Expect = 4e-09
Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 42/142 (29%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F + ++ + +G A F C V G +P +V W
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKV------------------EG----YPD----PEVMW 75
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---- 124
K D + + + + +++ +L I V +D Y C+ N +
Sbjct: 76 FKDD---------NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA-VNSLGEAT 125
Query: 125 TKQMAFLEVVIPPDISSEETSG 146
A L V E G
Sbjct: 126 CT--AELLVETMGKEGEGEGEG 145
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 64.4 bits (157), Expect = 1e-13
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
PP I + V G+ L C A G P P I WR+ D + ++ +
Sbjct: 8 PPVIRQGPV--NQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLV-----STQDSRIKQL 59
Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
E+ VL + + G Y CIA+ G + + V
Sbjct: 60 ENGVLQIRYAKLGDTGRYTCIASTPSG---EATWSAYIEVQ 97
Score = 48.6 bits (116), Expect = 8e-08
Identities = 26/147 (17%), Positives = 39/147 (26%), Gaps = 41/147 (27%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P N T+A + +CV G P + + W
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVAT---GS-------------------PVPT----ILW 42
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
K V T ++R+ N L IR + D G Y C + P
Sbjct: 43 RKDGVL--------VSTQDSRIKQLENG----VLQIRYAKLGDTGRYTCIA-STPSGEAT 89
Query: 127 QMAFLEVVIPPDISSEETSGDMMVPEG 153
A++EV D +
Sbjct: 90 WSAYIEVQEFGVPVQPPRPTDPNLIPS 116
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 63.6 bits (155), Expect = 1e-13
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 136 PPDISSEETS--GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF 193
P ++ E VP + K C A G P P + W + + KE +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEF--KQEHRIGGYKV 60
Query: 194 SVESEVLSLTKVTRSEMGAYQCIAANGV 221
+ L + V S+ G Y C+ N
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEY 88
Score = 41.3 bits (97), Expect = 2e-05
Identities = 22/132 (16%), Positives = 33/132 (25%), Gaps = 42/132 (31%)
Query: 9 PDFLYPL----ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM 64
P + + F C G+ + PT
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAG---GNPM-----------------PT----- 39
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
+ W+K R+ W+L + SV D+G Y C V N
Sbjct: 40 -MRWLKNG---------KEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV-ENEY 88
Query: 125 --TKQMAFLEVV 134
L+VV
Sbjct: 89 GSINHTYHLDVV 100
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 67.5 bits (164), Expect = 2e-13
Identities = 26/161 (16%), Positives = 41/161 (25%), Gaps = 19/161 (11%)
Query: 84 ITNNARLSVTH---NDANTWTLNIRSV-RREDRGYYMCQV-NTNPMTKQMAFLEVVIPPD 138
I S T + L + +V +R C N + + V P
Sbjct: 193 ILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPAS 252
Query: 139 ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI---IVRSNPPSSQKVFSV 195
+ G P P + W + + + +V
Sbjct: 253 VQLHTAVEMHHWCI------PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 306
Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
L L + T G Y +AAN G S +M
Sbjct: 307 RHGCLRLNQPTHVNNGNYTLLAANPFG---QASASIMAAFM 344
Score = 64.4 bits (156), Expect = 3e-12
Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 13/151 (8%)
Query: 90 LSVTHNDANTWTLN-----IRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEET 144
L N + ++ E G Q +A + + +
Sbjct: 105 LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQ 164
Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK 204
+ V G L C+ +G + W + + K + S L+L
Sbjct: 165 VPNASVDVGDDVLLRCQVEGRGLEQAGWILTE------LEQSATVMKSGGLPSLGLTLAN 218
Query: 205 VTR-SEMGAYQCIAANGVPPTVSKRLMLHVH 234
VT C A N V + ++V
Sbjct: 219 VTSDLNRKNVTCWAENDVGRA-EVSVQVNVS 248
Score = 43.6 bits (102), Expect = 2e-05
Identities = 17/138 (12%), Positives = 27/138 (19%), Gaps = 19/138 (13%)
Query: 15 LENVTIAQGRDA-IFTCVVNNLGGHRVSS---------SVTDTHVNTGGSIVFPTDSSAM 64
L + + TC N G S SV P
Sbjct: 214 LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQ 273
Query: 65 ---KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
+ W+ + + I + L + + G Y
Sbjct: 274 PAPSLRWLFNGS---VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA-A 329
Query: 122 NP--MTKQMAFLEVVIPP 137
NP + P
Sbjct: 330 NPFGQASASIMAAFMDNP 347
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 63.1 bits (154), Expect = 2e-13
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
PP + +M + EG ++ K G P P ++W + + + K+
Sbjct: 5 PPRFI--QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTV----QSDDLHKMIVS 57
Query: 196 ESEVLSL--TKVTRSEMGAYQCIAAN 219
E + SL V S+ GAY C+A N
Sbjct: 58 EKGLHSLIFEVVRASDAGAYACVAKN 83
Score = 46.9 bits (112), Expect = 2e-07
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 35/109 (32%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F+ EN++I +GR V +G P V+W
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKV------------------SG----LPAP----DVSW 39
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
+ ++ + ++ +L VR D G Y C
Sbjct: 40 YLNG---------RTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC 79
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 63.1 bits (153), Expect = 5e-13
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE-------- 198
GGS +L C+A G P P+I W E + S ++ V
Sbjct: 30 SQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAA 89
Query: 199 -VLSLTKVTRSEMGAYQCIAANGV 221
+S+ + + G Y+C A+N
Sbjct: 90 STISIDTLVEEDTGTYECRASNDP 113
Score = 41.9 bits (98), Expect = 2e-05
Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 29/120 (24%)
Query: 1 MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTD 60
+VP F+ + G C GS V P
Sbjct: 14 LVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAV-------------------GSPV-PE- 52
Query: 61 SSAMKVAWIKAD---TKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
+ W + + + + T++ T++I ++ ED G Y C
Sbjct: 53 -----IQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYEC 107
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 62.4 bits (152), Expect = 5e-13
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 130 FLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSS 189
+ + I ++ M V EG SA+ C G P P +TW R + + S+
Sbjct: 8 SSKTTLAARILTKPR--SMTVYEGESARFSCDTDGEPVPTVTWLR-KGQVL-----STSA 59
Query: 190 QKVFSVESEVLSLT--KVTRSEMGAYQCIAANGV 221
+ + + V S+ G Y + N
Sbjct: 60 RHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 93
Score = 45.4 bits (108), Expect = 8e-07
Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 37/115 (32%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
L ++T+ +G A F+C + G V PT V W
Sbjct: 15 ARILTKPRSMTVYEGESARFSCDTD---GEPV-----------------PT------VTW 48
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
++ V++ +AR VT + T I SV+ D G Y V N
Sbjct: 49 LRKG---------QVLSTSARHQVTTTKYKS-TFEISSVQASDEGNYSVVV-ENS 92
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 62.4 bits (152), Expect = 6e-13
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSL--TK 204
+ V G A+L C G P P + W + +++ S + F + L T
Sbjct: 22 PVRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQL-----AASERLSFPADGAEHGLLLTA 75
Query: 205 VTRSEMGAYQCIAAN 219
++ G Y C A N
Sbjct: 76 ALPTDAGVYVCRARN 90
Score = 48.5 bits (116), Expect = 7e-08
Identities = 28/131 (21%), Positives = 39/131 (29%), Gaps = 39/131 (29%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P FL V + G +A CVV G P V W
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVV------------------LG----EPP----PVVVW 47
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
K + + + RLS D L + + D G Y+C+ N
Sbjct: 48 EKGGQQ---------LAASERLSFPA-DGAEHGLLLTAALPTDAGVYVCRA-RNAAGEAY 96
Query: 127 QMAFLEVVIPP 137
A + V+ PP
Sbjct: 97 AAAAVTVLEPP 107
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 61.9 bits (151), Expect = 6e-13
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
IPP I + + D+ + EG + C G PTP++TW ++I Q F
Sbjct: 4 IPPKIEALPS--DISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKI-----HSQEQGRFH 55
Query: 195 VESE----VLSLTKVTRSEMGAYQCIAAN 219
+E+ L + V + + G Y N
Sbjct: 56 IENTDDLTTLIIMDVQKQDGGLYTLSLGN 84
Score = 47.7 bits (114), Expect = 1e-07
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 35/115 (30%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P +++I +G+ C TG PT +V W
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAF------------------TG----EPT----PEVTW 39
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
+ + + R + + D + TL I V+++D G Y + N
Sbjct: 40 SC-GGRKIHS------QEQGRFHIENTD-DLTTLIIMDVQKQDGGLYTLSL-GNE 85
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 64.5 bits (156), Expect = 7e-13
Identities = 34/211 (16%), Positives = 61/211 (28%), Gaps = 53/211 (25%)
Query: 52 GGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRRED 111
GS++ D+ A + W K + + N+ S ++
Sbjct: 18 DGSVLLTCDAEAKNITWFKDGKM-----------------IGFLTEDKKKWNLGSNAKDP 60
Query: 112 RGYYMCQVNTNPMTKQM--------------AFLEVVIPPDISSEETSGDMMVP------ 151
RG Y C+ + +K + + +++ D
Sbjct: 61 RGMYQCKG-SQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQ 119
Query: 152 -------EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK 204
G + L C YP +I W+ ++K I K + + LSL +
Sbjct: 120 TPYKVSISGTTVILTCPQ--YPGSEILWQH-NDKNI----GGDEDDKNIGSDEDHLSLKE 172
Query: 205 VTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
+ E G Y C P + L L
Sbjct: 173 FSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 64.5 bits (157), Expect = 7e-13
Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 119 VNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
+ + + P + + EG + C+ YP+ I+W R +
Sbjct: 2 TYAAASSALVPRGSHMYAPKLQGPV---AVYTWEGNQVNITCEVFAYPSATISWFR--DG 56
Query: 179 EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
+++ SN + + + + L +T + ++ G Y C A N
Sbjct: 57 QLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVN 97
Score = 39.8 bits (93), Expect = 3e-04
Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 16/100 (16%)
Query: 45 TDTHVNTGGSIVFPTDSSA---MKVAWIKADTKAVLAIHEHVITNNARLSVT-HNDANTW 100
+ G + + A ++W + ++ ++ ++ +N +
Sbjct: 26 VAVYTWEGNQVNITCEVFAYPSATISWFRDG---------QLLPSSNYSNIKIYNTPSAS 76
Query: 101 TLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPD 138
L + D G Y C N L P
Sbjct: 77 YLEVTPDSENDFGNYNCTA-VNRIGQESLEFILVQADTPS 115
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 65.9 bits (161), Expect = 8e-13
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
P I + D+ + EG A+L C+ P + W + + S ++ +
Sbjct: 352 APFIM--DAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHAS---RHPRISVL 404
Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
L+ + V S+ G Y C+ N + L+V
Sbjct: 405 NDGTLNFSHVLLSDTGVYTCMVTNVA-GNSNASAYLNVS 442
Score = 39.7 bits (93), Expect = 5e-04
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 19/118 (16%)
Query: 28 FTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTD-SSAMKVAWIKADTKAVLAIHEHVITN 86
F C + + D +++ G V W+ + + +
Sbjct: 348 FQCSAP-----FIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVL-----SHASR 397
Query: 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEV-VIPPDISS 141
+ R+SV ++ TLN V D G Y C V TN + A+L V
Sbjct: 398 HPRISVLNDG----TLNFSHVLLSDTGVYTCMV-TNVAGNSNASAYLNVSTAGTHHHH 450
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 63.1 bits (153), Expect = 1e-12
Identities = 28/181 (15%), Positives = 53/181 (29%), Gaps = 31/181 (17%)
Query: 48 HVNTGGSIVFPTDSSAMK-----VAWIKADTK-AVLAIHEHVITNNARLSVTHNDANTWT 101
G I + M V W + T A + + N
Sbjct: 7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN----GD 62
Query: 102 LNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
L I+++ R+D G Y V +TN L++ I +S E +A L C
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIY-----WECSNATLTC 117
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG 220
+ ++ + + + +++ + ++C A N
Sbjct: 118 EVLEGTDVELKLYQ-GKEHLR--------------SLRQKTMSYQWTNLRAPFKCKAVNR 162
Query: 221 V 221
V
Sbjct: 163 V 163
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 61.1 bits (149), Expect = 1e-12
Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
D V AK KA G P P W + D K I + S + L K
Sbjct: 15 DTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAI-----TQGGKYKLSEDKGGFFLEIHK 68
Query: 205 VTRSEMGAYQCIAAN 219
S+ G Y C N
Sbjct: 69 TDTSDSGLYTCTVKN 83
Score = 45.0 bits (107), Expect = 1e-06
Identities = 19/109 (17%), Positives = 28/109 (25%), Gaps = 36/109 (33%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P + L++ T++ A F TG P W
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKA------------------TG----EPR----PTAIW 40
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
K IT + ++ D + L I D G Y C
Sbjct: 41 TKDG---------KAITQGGKYKLS-EDKGGFFLEIHKTDTSDSGLYTC 79
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 61.6 bits (150), Expect = 1e-12
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
+ EG C+ G P PKI W + D K+I S + SL
Sbjct: 17 HYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQI---SPKSDHYTIQRDLDGTCSLHTTA 72
Query: 205 VTRSEMGAYQCIAAN 219
T + G Y +AAN
Sbjct: 73 STLDDDGNYTIMAAN 87
Score = 47.3 bits (113), Expect = 2e-07
Identities = 24/135 (17%), Positives = 38/135 (28%), Gaps = 37/135 (27%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P F L++ I +G FTC V G P K+ W
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRV------------------AG----NPK----PKIYW 42
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
K + + + ++ + T +L+ + +D G Y NP
Sbjct: 43 FKDG--------KQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA-ANPQGRIS 93
Query: 127 QMAFLEVVIPPDISS 141
L V S
Sbjct: 94 CTGRLMVQAVNSGPS 108
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 60.5 bits (147), Expect = 3e-12
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 132 EVVIPPDISSEETSGD-MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
E+ PP I + G LV +G P P++ W + + S
Sbjct: 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPL-----DTSRV 70
Query: 191 KVFSVESE-VLSLTKVTRSEMGAYQCIAAN 219
V + + + V + + RS+ G Y+
Sbjct: 71 HVRTSDFDTVFFVRQAARSDSGEYELSVQI 100
Score = 35.1 bits (81), Expect = 0.005
Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 12/74 (16%)
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNP 123
+V W K + HV T++ +R R D G Y V N
Sbjct: 55 QVVWTK-GGAPLDTSRVHVRTSD----------FDTVFFVRQAARSDSGEYELSVQIENM 103
Query: 124 MTKQMAFLEVVIPP 137
+ VV
Sbjct: 104 KDTATIRIRVVEKA 117
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 62.1 bits (150), Expect = 4e-12
Identities = 28/152 (18%), Positives = 45/152 (29%), Gaps = 10/152 (6%)
Query: 92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP 151
N+ T TL + V + Y+C T K ++V I E +
Sbjct: 46 KVTNEGTTSTLTMNPVSFGNEHSYLC-TATCESRKLEKGIQVEIYSFPKDPEIHLSGPLE 104
Query: 152 EGGSAKLVCKAKG-YPTPK--ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
G + C YP + I + D+ + +K +S ++ T V
Sbjct: 105 AGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIED 164
Query: 209 EMGAYQCIAAN------GVPPTVSKRLMLHVH 234
C A VP L V+
Sbjct: 165 IGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196
Score = 54.8 bits (131), Expect = 2e-09
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
++ P + G S L C G +P +WR + + +P + +
Sbjct: 1 FKIETTP-------ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQID-------SPLNGK 46
Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ L++ V+ +Y C A + K + + ++
Sbjct: 47 VTNEGTTSTLTMNPVSFGNEHSYLCTATCES-RKLEKGIQVEIY 89
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 63.6 bits (155), Expect = 5e-12
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
P I E D+ V EG +A+L C+A ++W + + + ++ +
Sbjct: 341 APVIV--EPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGA---YKVRIAVL 394
Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHV 233
L+ T VT + G Y C+ +N G + L+V
Sbjct: 395 SDGTLNFTNVTVQDTGMYTCMVSNSVG---NTTASATLNV 431
Score = 44.0 bits (104), Expect = 2e-05
Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 20/116 (17%)
Query: 28 FTCVVNNLGGHRVSSSVTDTHVNTGGSIVFP--TDSSAMKVAWIKADTKAVLAIHEHVIT 85
FTC + D +V G + +S V+WI + +
Sbjct: 337 FTCYAP-----VIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVM-----THGA 386
Query: 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVV-IPPD 138
R++V + TLN +V +D G Y C V +N + T A L V
Sbjct: 387 YKVRIAVLSDG----TLNFTNVTVQDTGMYTCMV-SNSVGNTTASATLNVTGTHHH 437
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 62.9 bits (153), Expect = 8e-12
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
G + + C K K+ + E ++ S SV + L KV
Sbjct: 255 AWEAHLGDTLTIRCDTKQQGMTKVWVS--PSNEQVL---SQGSNGSVSVRNGDLFFKKVQ 309
Query: 207 RSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
+ G Y C A + + L V+
Sbjct: 310 VEDGGVYTCYAMGETF---NETLSVELKVY 336
Score = 35.6 bits (82), Expect = 0.010
Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 24/129 (18%)
Query: 27 IFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA--MKVAWIKADTKAVLAIHEHVI 84
F C + + G ++ D+ M W+ +E V+
Sbjct: 245 FFNCSEY---------KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPS-------NEQVL 288
Query: 85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDISSE 142
+ + SV+ + L + V+ ED G Y C L+V
Sbjct: 289 SQGSNGSVSVRNG---DLFFKKVQVEDGGVYTCYA-MGETFNETLSVELKVYNFTLHGHH 344
Query: 143 ETSGDMMVP 151
+T P
Sbjct: 345 DTLNAAADP 353
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 58.5 bits (142), Expect = 1e-11
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
+ P I + + + G + L G P P TW + + + +
Sbjct: 1 LKPKILTASR--KIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGA-----ALAPELLVD 52
Query: 195 VESEVLSLT--KVTRSEMGAYQCIAAN 219
+S S+ R++ G Y+ N
Sbjct: 53 AKSSTTSIFFPSAKRADSGNYKLKVKN 79
Score = 44.6 bits (106), Expect = 1e-06
Identities = 18/115 (15%), Positives = 24/115 (20%), Gaps = 37/115 (32%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P L + I G G P W
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDF------------------IG----APDP----TATW 36
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
D L V + T ++ S +R D G Y +V N
Sbjct: 37 TVGD---------SGAALAPELLVDAKSSTT-SIFFPSAKRADSGNYKLKV-KNE 80
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 59.1 bits (143), Expect = 1e-11
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPP 187
L V PP ISS +T G ++ C + P P +I W ++N + ++
Sbjct: 7 GTLTVNGPPIISSTQT---QHALHGEKGQIKCFIRSTPPPDRIAWSWKEN-VLESGTSGR 62
Query: 188 SSQKVFSVESEV---LSLTKVTRSEMGA-YQCIAANGV 221
+ + S E V L+++ + R++ Y C A N
Sbjct: 63 YTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSF 100
Score = 26.8 bits (59), Expect = 3.8
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 101 TLNIRSVRREDRG-YYMCQVNTNPMTKQMAFLEVVIPPDISSEETSG 146
TL I ++ R D Y C N + + S +SG
Sbjct: 77 TLTISNIVRADFQTIYNCTA-WNSFGSDTEIIRLKEQGSEMSGPSSG 122
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 58.1 bits (141), Expect = 2e-11
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
V +G A + G P P+ W + + +I + E V L
Sbjct: 14 SQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKI----ERSDRIYWYWPEDNVCELVIRD 68
Query: 205 VTRSEMGAYQCIAAN 219
VT + + A N
Sbjct: 69 VTGEDSASIMVKAIN 83
Score = 50.7 bits (122), Expect = 8e-09
Identities = 24/116 (20%), Positives = 33/116 (28%), Gaps = 36/116 (31%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P +++ T+ QG DA F V G P + W
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRV------------------VG----KPD----PECEW 39
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
K K I + R+ + N L IR V ED M + N
Sbjct: 40 YKNGVK---------IERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA-INIA 85
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 58.1 bits (141), Expect = 2e-11
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
VP G + + + + PT ++ W + E+ SS+ ++ S VL+L
Sbjct: 17 SHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVEL-----QESSKIHYTNTSGVLTLEILD 70
Query: 205 VTRSEMGAYQCIAAN 219
+ G Y+ + N
Sbjct: 71 CHTDDSGTYRAVCTN 85
Score = 49.2 bits (118), Expect = 3e-08
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 37/116 (31%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P + + + G++ F V PT +V W
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNV------------------QS----KPT----AEVKW 42
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
+ ++++ T+ TL I +D G Y TN
Sbjct: 43 YHNG---------VELQESSKIHYTNTS-GVLTLEILDCHTDDSGTYRAVC-TNYK 87
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 58.1 bits (141), Expect = 2e-11
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
P I + D V G S +L K G TW + K+I + V
Sbjct: 7 GPQII--QFPEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEH-------MKV 56
Query: 196 ESE----VLSLTKVTRSEMGAYQCIAAN 219
E+ L++ + G Y + N
Sbjct: 57 ENSENGSKLTILAARQEHCGCYTLLVEN 84
Score = 51.9 bits (125), Expect = 4e-09
Identities = 23/131 (17%), Positives = 37/131 (28%), Gaps = 37/131 (28%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P + E+ + G V TG + W
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKV------------------TG----TQP----ITCTW 41
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQ 127
+K I + + V +++ + L I + R+E G Y V N +
Sbjct: 42 MKFR---------KQIQESEHMKVENSENGS-KLTILAARQEHCGCYTLLVENKLGSRQA 91
Query: 128 MAFLEVVIPPD 138
L VV PD
Sbjct: 92 QVNLTVVDKPD 102
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 58.2 bits (140), Expect = 2e-11
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV------FSVESEVL 200
G C A +T+ + E + + + + + +L
Sbjct: 19 TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTIL 78
Query: 201 SLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
L V + G YQC+ +N + S L ++
Sbjct: 79 RLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 35.8 bits (82), Expect = 0.002
Identities = 21/127 (16%), Positives = 31/127 (24%), Gaps = 28/127 (22%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P E + G D FTC SS + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSA--------------------------ASSSDSPMTF 44
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN--PMTK 126
L E + R T L +R+V G Y C ++ +
Sbjct: 45 AWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYS 104
Query: 127 QMAFLEV 133
A L +
Sbjct: 105 VXAXLTI 111
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 60.6 bits (146), Expect = 4e-11
Identities = 28/241 (11%), Positives = 67/241 (27%), Gaps = 40/241 (16%)
Query: 28 FTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87
+ V + S + + + ++ + T L
Sbjct: 67 YKVTVQDTDTMTSVESEVFLMEEA----ELIVNITEPQHFYVSSQTDVELHATVKFSGGK 122
Query: 88 ARLSVTHNDANTW-----------TLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVI 135
+ + +W + I+ + G Y +V + + A ++++
Sbjct: 123 TP-ADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIML 181
Query: 136 PPDISSEETSGDMMVPEGGSAKL--------VCKAKGYPTPKITWRREDNKE-----IIV 182
++ V G L V + G P I + +E ++
Sbjct: 182 ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLI 241
Query: 183 RSNPPSSQKVFSVESE-VLSLTKVTRSEMGAYQCIAANG---------VPPTVSKRLMLH 232
S + + FS+ + L T + + C+A V + S++ +
Sbjct: 242 GSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSME 301
Query: 233 V 233
V
Sbjct: 302 V 302
Score = 44.0 bits (103), Expect = 2e-05
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 27/135 (20%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
NT TL + E+ G Y V + + + + I + V
Sbjct: 50 NTATLTVADATSENAGSYKVTV-QDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQT 108
Query: 155 SAKLVCK---AKGYPTPKI-----TWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+L + G +W + + ++ +++ + T
Sbjct: 109 DVELHATVKFSGGKTPADNYELHYSWSKGE---------------DVIDTTQDITIQEFT 153
Query: 207 RSEMGAYQCIAANGV 221
+ G Y
Sbjct: 154 ADKNGVYTVKVWGES 168
Score = 33.6 bits (76), Expect = 0.044
Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 20/106 (18%)
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTPK---ITWRREDNKEIIVRSNPPSSQ 190
+ +S S G L G P P TW + D++
Sbjct: 1 MAFTVSI--QSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK-DDQPH---------- 47
Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT 236
+ L++ T G+Y+ + T + + +
Sbjct: 48 ---ENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEA 90
Score = 26.7 bits (58), Expect = 6.3
Identities = 17/132 (12%), Positives = 28/132 (21%), Gaps = 35/132 (26%)
Query: 18 VTIAQGRDA-IFTCVVNNLGGHRVSSSVTDTH---------------VNTGGSIVFPTDS 61
+ ++T V +S+ T V G I
Sbjct: 149 IQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVV 208
Query: 62 SAMKVA---------------WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRS 106
S V + + I V S+T + L S
Sbjct: 209 SEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG----HLFKES 264
Query: 107 VRREDRGYYMCQ 118
+D + C
Sbjct: 265 ATYDDTAKFWCV 276
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 58.0 bits (140), Expect = 7e-11
Identities = 26/180 (14%), Positives = 57/180 (31%), Gaps = 29/180 (16%)
Query: 46 DTHVNTGGSIVF--PTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLN 103
+ G++ F P++ +V W K K + ++ + + D + +L
Sbjct: 4 QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLT 63
Query: 104 IRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
I ++ D Y + T + LE+V P I E +A L C+
Sbjct: 64 IYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYW----------ECSNATLTCE 113
Query: 162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
++ + + + +++ + ++C A N V
Sbjct: 114 VLEGTDVELKLYQ-GKEHL--------------RSLRQKTMSYQWTNLRAPFKCKAVNRV 158
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 58.7 bits (141), Expect = 9e-11
Identities = 41/237 (17%), Positives = 66/237 (27%), Gaps = 50/237 (21%)
Query: 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA 75
++VT+ +G + C + SS + V W +
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPP-------------------LYVYWFRDGEI- 47
Query: 76 VLAIHEHVITNNA----------RLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM 124
E V TNN R + + +L+I R ED G Y +V
Sbjct: 48 -PYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRD 106
Query: 125 TK---QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC----KAKGYPTPKITWRREDN 177
K Q L + + I + + G +L C + P +W
Sbjct: 107 VKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA- 165
Query: 178 KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVSKRLMLHV 233
S + S L+LT C G T + + L+V
Sbjct: 166 ---------LSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 56.9 bits (137), Expect = 9e-11
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 8/81 (9%)
Query: 147 DMMVPEGGSAKLVCKAKGYP---TPKITWRREDNKEIIVRSNPPSSQK-----VFSVESE 198
V G + K K P I W + ++ ++ K V +
Sbjct: 16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 75
Query: 199 VLSLTKVTRSEMGAYQCIAAN 219
+ + K + G Y+C
Sbjct: 76 EMQIIKAKDNFAGNYRCEVTY 96
Score = 45.8 bits (108), Expect = 8e-07
Identities = 20/140 (14%), Positives = 32/140 (22%), Gaps = 27/140 (19%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
F+ + T+ G D F V + W
Sbjct: 8 ILFIEKPQGGTVKVGEDITFIAKVK-------------------AE---DL-LRKPTIKW 44
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ- 127
K + + + T+ + I + G Y C+V T
Sbjct: 45 FKGKWMDLASKAGKHLQLKETFERHSRVY-TFEMQIIKAKDNFAGNYRCEV-TYKDKFDS 102
Query: 128 -MAFLEVVIPPDISSEETSG 146
LEV + SG
Sbjct: 103 CSFDLEVHESTGTTPNIDSG 122
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 55.9 bits (135), Expect = 1e-10
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 15/106 (14%)
Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
V P I+ E+ + KG P P + W N I+ S ++
Sbjct: 1 VHFAPTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFY--NGAILNESKYICTKIH 53
Query: 193 FSVESE---VLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHV 233
+ +E L L T G Y IA N G K++ H
Sbjct: 54 VTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG---KDEKQISAHF 96
Score = 39.7 bits (93), Expect = 8e-05
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
+ W +L +++ T ++ VT++ L + + + G Y N
Sbjct: 32 ALQWFYNGA--ILNESKYICT---KIHVTNHTEYHGCLQLDNPTHMNNGDYTLIA-KNEY 85
Query: 125 --TKQMAFLEVVIPPDI 139
++ + P I
Sbjct: 86 GKDEKQISAHFMGWPGI 102
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 55.5 bits (134), Expect = 1e-10
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
E +V G +L C+ + I W R D ++ S + +
Sbjct: 3 SGSSGVEVE--SFLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQL------AESNR-TRI 51
Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGV 221
E + + ++ G Y C+ ++
Sbjct: 52 TGEEVEVQDSVPADSGLYACVTSSPS 77
Score = 46.2 bits (110), Expect = 3e-07
Identities = 16/141 (11%), Positives = 37/141 (26%), Gaps = 42/141 (29%)
Query: 6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK 65
G +E+ + G C + +
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRD---------------------------DVQS 33
Query: 66 VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125
+ W++ + + + R +T + ++ D G Y C ++P
Sbjct: 34 INWLRDGVQ---------LAESNRTRITGE-----EVEVQDSVPADSGLYACVT-SSPSG 78
Query: 126 KQMAFLEVVIPPDISSEETSG 146
+ V + + S +SG
Sbjct: 79 SDTTYFSVNVSDALPSGPSSG 99
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 55.2 bits (133), Expect = 2e-10
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
E P + E ++V G +L C+ + I W R D ++ S +
Sbjct: 5 EQAQPWGVPVEVE--SLLVHPGDLLQLRCRLRD-DVQSINWLR-DGVQL------VESNR 54
Query: 192 VFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
+ E + + ++ G Y C+ ++
Sbjct: 55 T-RITGEEVEVRDSIPADSGLYACVTSSPS 83
Score = 35.5 bits (82), Expect = 0.002
Identities = 13/122 (10%), Positives = 32/122 (26%), Gaps = 42/122 (34%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
+P + +E++ + G C + +
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD--------------------------- 35
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
+ W++ + + + R +T + +R D G Y C +
Sbjct: 36 DVQSINWLRDGVQ---------LVESNRTRITGE-----EVEVRDSIPADSGLYACVT-S 80
Query: 122 NP 123
+P
Sbjct: 81 SP 82
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 54.6 bits (132), Expect = 3e-10
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT-- 203
+ EGG K VCK + Y ++TW +++ S + + E V L
Sbjct: 10 HAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQL-----ENSEKYEITYEDGVAILYVK 63
Query: 204 KVTRSEMGAYQCIAAN 219
+T+ + G Y+C N
Sbjct: 64 DITKLDDGTYRCKVVN 79
Score = 42.3 bits (100), Expect = 8e-06
Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 38/122 (31%)
Query: 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
+ + +G + C + + +V W
Sbjct: 7 QIMHAVGEEGGHVKYVCKI------------------ENYD-------QSTQVTWYFGVR 41
Query: 74 KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFL 131
+ + N+ + +T+ D L ++ + + D G Y C+V N A L
Sbjct: 42 Q---------LENSEKYEITYED-GVAILYVKDITKLDDGTYRCKV-VNDYGEDSSYAEL 90
Query: 132 EV 133
V
Sbjct: 91 FV 92
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 55.1 bits (133), Expect = 3e-10
Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 40/147 (27%)
Query: 2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
V+G + LE+V + +G A F C + + +
Sbjct: 7 GLVQGRRVHIIEDLEDVDVQEGSSATFRCRI--------------------------SPA 40
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
+ V W T + N + L +R + +D G +
Sbjct: 41 NYEPVHWFLDKTP---------LHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGD 91
Query: 122 NPMTKQMAFLEVVIPPDISSEE--TSG 146
+ A L V P + S +SG
Sbjct: 92 ---QRASAALRVTEKPSVFSRSGPSSG 115
Score = 51.2 bits (123), Expect = 9e-09
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 12/93 (12%)
Query: 129 AFLEV-VIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPP 187
+ V I + D+ V EG SA C+ + W D +
Sbjct: 5 SSGLVQGRRVHIIEDLE--DVDVQEGSSATFRCRISPANYEPVHWFL-DKTPL-----HA 56
Query: 188 SSQKVFSVESE---VLSLTKVTRSEMGAYQCIA 217
+ + VL+L ++ + G A
Sbjct: 57 NELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA 89
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 55.1 bits (132), Expect = 3e-10
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE------DNKEIIVRSNPPSSQKVFSVE 196
S + + G L C A+ I + E +K+++ R S
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72
Query: 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
L++ VTRS+ G Y C A++G+ T + VH
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGL-MTKKNSTFVRVH 109
Score = 38.6 bits (89), Expect = 3e-04
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 27/130 (20%)
Query: 12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA 71
L P + ++ G + C + + +
Sbjct: 12 LSPSHGIELSVGEKLVLNCTA--------------------------RTELNVGIDFNWE 45
Query: 72 DTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM-AF 130
+ + V + S + TL I V R D+G Y C ++ MTK+ F
Sbjct: 46 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTF 105
Query: 131 LEVVIPPDIS 140
+ V P ++
Sbjct: 106 VRVHEKPFVA 115
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 57.4 bits (138), Expect = 4e-10
Identities = 38/178 (21%), Positives = 58/178 (32%), Gaps = 24/178 (13%)
Query: 58 PTDSSAMKVAW---IKADTKAVLAIHEHVITNNARLSVTHNDANTW-----TLNIRSVRR 109
P + ++M + W K V A +L + ++
Sbjct: 32 PLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQL 91
Query: 110 EDRGYYMCQVNTNPMTKQMAF-LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPT 167
E+ G Y C+V P+ Q LEVV P + + K +C++ G YP
Sbjct: 92 EEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQ---VGMKENEDKYMCESSGFYPE 148
Query: 168 P-KITWRREDNKEII-------VRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQC 215
ITW ++ K V + P F+V S L L YQC
Sbjct: 149 AINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTS-CLKLNSSQEDPGTVYQC 205
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 54.1 bits (130), Expect = 8e-10
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 16/108 (14%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
L V PP + S E + +G P P + W +R +
Sbjct: 3 LTVYYPPRVVSLEEP-----ELRLEHCIEFVVRGNPPPTLHWLHNGQP---LRESKIIHV 54
Query: 191 KVF---SVESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHV 233
+ + + L K T G Y IA N G T ++ + H
Sbjct: 55 EYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLG---TANQTINGHF 99
Score = 38.3 bits (89), Expect = 4e-04
Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 15/84 (17%)
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVTH---NDANTWTLNIRSVRREDRGYYMCQVNT 121
+ W+ + + + V + + + L + G Y
Sbjct: 36 TLHWLHNGQ---------PLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA-K 85
Query: 122 NPM--TKQMAFLEVVIPPDISSEE 143
NP+ Q + P E
Sbjct: 86 NPLGTANQTINGHFLKEPFPVDEV 109
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 53.7 bits (129), Expect = 1e-09
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 39 RVSSSVTDTHVNTGGSIVFPTDSSAMK----VAWIKADTKAVLAIHEHVITNNA------ 88
R S+ D + TG ++ + + W+ + +L + +
Sbjct: 5 RARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKG 64
Query: 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP 136
R+ + + N L+I +VR+ED+G Y +V + LEV P
Sbjct: 65 RVYL---EENNGALHISNVRKEDKGTYYMRVLRETENELKITLEVFDP 109
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 53.4 bits (128), Expect = 1e-09
Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 26/126 (20%)
Query: 16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA 75
N++ +G I C +++ T + +V W + D
Sbjct: 11 GNISAEKGGSIILQCHLSS------------------------TTAQVTQVNWEQQDQLL 46
Query: 76 VLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEV 133
+ + + L ++S+ D G Y C +T P FLEV
Sbjct: 47 AICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
Query: 134 VIPPDI 139
+
Sbjct: 107 LESSVA 112
Score = 44.5 bits (105), Expect = 2e-06
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTP--KITWRREDNKEII------VRSNPPSSQKVFS 194
ET+G++ +GGS L C ++ W ++D I +P +V
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67
Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
L+L +T ++ G Y CI T + R+ L V
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 56.3 bits (135), Expect = 2e-09
Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 10/149 (6%)
Query: 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETS 145
N A L+++ N + + + +GY + ++
Sbjct: 121 NRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVE----- 175
Query: 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
V G A C A G + + ++
Sbjct: 176 ----VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS-FNVVNT 230
Query: 206 TRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
T+ + G Y+C+ +S L V
Sbjct: 231 TKRDAGKYRCMIRTEGGVGISNYAELVVK 259
Score = 29.7 bits (66), Expect = 0.98
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 7/49 (14%)
Query: 151 PEGGSAKLVCKAKGYPTPKITWRREDNK-------EIIVRSNPPSSQKV 192
G + K P W + E+ + + P+ +V
Sbjct: 89 SPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQV 137
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 52.7 bits (126), Expect = 2e-09
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 13/98 (13%)
Query: 147 DMMVPEGGSAKLVCKAKGYP---TPKITWRREDNKEIIVRSNPP-----SSQKVFSVESE 198
D V GGS + G P + W + ++ + S + V
Sbjct: 13 DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72
Query: 199 VLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
L +T + G+Y+C + L VH
Sbjct: 73 ELHITDAQPAFTGSYRCEVSTKDK---FDCSNFNLTVH 107
Score = 43.4 bits (102), Expect = 5e-06
Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 25/113 (22%)
Query: 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK 70
F+ ++ + G F+ V + P V W K
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKP-----------------PV------VKWFK 43
Query: 71 ADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
+ + + + + + L+I + G Y C+V +
Sbjct: 44 GKWVDLSSKVGQHLQLHDSYDR-ASKVYLFELHITDAQPAFTGSYRCEV-STK 94
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 51.9 bits (125), Expect = 3e-09
Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 39/129 (30%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
L PL + T+ G++ C + S + W
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEI----------------------------SENIPGKW 39
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
K + + RL V L I + ED G Y+
Sbjct: 40 TKNG---------LPVQESDRLKVVQ-KGRIHKLVIANALTEDEGDYVF-APDAYNVTLP 88
Query: 129 AFLEVVIPP 137
A + V+ P
Sbjct: 89 AKVHVISGP 97
Score = 46.2 bits (110), Expect = 4e-07
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 13/89 (14%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
D V G L C+ K W + + + S + + + L
Sbjct: 16 DQTVNLGKEICLKCEISENIPGK--WTK-NGLPV-----QESDRLKVVQKGRIHKLVIAN 67
Query: 205 VTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ G Y V+ +HV
Sbjct: 68 ALTEDEGDYVFAPDAY---NVTLPAKVHV 93
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 55.2 bits (133), Expect = 4e-09
Identities = 24/154 (15%), Positives = 44/154 (28%), Gaps = 9/154 (5%)
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
W+ + W + + R + + + +
Sbjct: 413 WLTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIR 472
Query: 128 MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPP 187
AF + + V EG SA C+ P +TW + D++E+
Sbjct: 473 DAFWDRSEAQPRFIVKPY-GTEVGEGQSANFYCRVIASSPPVVTWHK-DDREL-----KQ 525
Query: 188 SSQKVFSVESEVLSLT--KVTRSEMGAYQCIAAN 219
S + + LT +V + G Y A N
Sbjct: 526 SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 52.0 bits (125), Expect = 4e-09
Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 38/130 (29%)
Query: 8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
+ + L + ++T+ A+F C V++ +
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSD---------------------------EKVTGK 40
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
W K + + + R++++H L I VR ED G Y
Sbjct: 41 WYKNGVE---------VRPSKRITISH-VGRFHKLVIDDVRPEDEGDYTFVP-DGYALSL 89
Query: 128 MAFLEVVIPP 137
A L +
Sbjct: 90 SAKLNFLEIK 99
Score = 47.8 bits (114), Expect = 1e-07
Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 14/100 (14%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
++ + D+ V A C+ W + + E+ PS + S
Sbjct: 8 QLEVLQDIA--DLTVKAAEQAVFKCEVSD-EKVTGKWYK-NGVEVR-----PSKRITISH 58
Query: 196 ESEVLSLT--KVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
L V + G Y + +S L+
Sbjct: 59 VGRFHKLVIDDVRPEDEGDYTFVPDGY---ALSLSAKLNF 95
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 53.3 bits (128), Expect = 6e-09
Identities = 27/146 (18%), Positives = 46/146 (31%), Gaps = 21/146 (14%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-LEVVI-----PPDISSEETSGDMMVP 151
I + G Y CQ + + LE+V+ P +S +++
Sbjct: 62 TDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLS---ADRGLVLM 118
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
G + L C + P + + +E + + F SL V + G
Sbjct: 119 PGENISLTCSSAHIPFDRFSLAKEGELSLPQHQS-GEHPANF-------SLGPVDLNVSG 170
Query: 212 AYQCIAANGVPPTV----SKRLMLHV 233
Y+C P + S L L V
Sbjct: 171 IYRCYGWYNRSPYLWSFPSNALELVV 196
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 52.9 bits (127), Expect = 7e-09
Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 11/143 (7%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA---FLEVVIPPDISSEETSGDMMVPEGG 154
N +I S+ + G Y C + Q + L + + +V G
Sbjct: 56 NKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGK 115
Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
S L+C+++ P +E ++ + E ++ VT G Y+
Sbjct: 116 SVTLLCQSR-SPMDTFLLCKERAAHPLLCLRSEHGAQQHQAE---FPMSPVTSVHGGTYR 171
Query: 215 CIAANGVPPTV----SKRLMLHV 233
C +++G + S L L V
Sbjct: 172 CFSSHGFSHYLLSHPSDPLELIV 194
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 51.7 bits (123), Expect = 9e-09
Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 28/112 (25%)
Query: 136 PPDI---SSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
PP I ++V G +L G P P + W++ + + P
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 193 FSVESE-------------------------VLSLTKVTRSEMGAYQCIAAN 219
+ +S+ + ++ + + G Y N
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKN 124
Score = 30.9 bits (69), Expect = 0.19
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
+ + R+ V + + +ED G Y V NP
Sbjct: 85 KLLCETEGRVRVETTKDRS-IFTVEGAEKEDEGVYTVTV-KNP 125
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 53.0 bits (127), Expect = 2e-08
Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 20/161 (12%)
Query: 86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV----NTNPMTKQMAFLEVVI-----P 136
+ + + H + N+ V G Y C+ + + + +++
Sbjct: 60 DRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRK 119
Query: 137 PDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE 196
P + + +V G L C + +E + R V
Sbjct: 120 PSLLAHPGP---LVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKAN 175
Query: 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTV----SKRLMLHV 233
S+ + + G Y+C + P S L + V
Sbjct: 176 ---FSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVV 213
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 50.1 bits (120), Expect = 2e-08
Identities = 30/143 (20%), Positives = 40/143 (27%), Gaps = 44/143 (30%)
Query: 4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
VR F L N +G A+ C + S
Sbjct: 15 VRALPIKFTEGLRNEEATEGATAVLRCEL----------------------------SKM 46
Query: 64 MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
V W K + + R S+ D L IR + ED G Y+C
Sbjct: 47 APVEWWKGH---------ETLRDGDRHSLRQ-DGARCELQIRGLVAEDAGEYLCMCGK-- 94
Query: 124 MTKQMAFLEVVIPPDISSEETSG 146
+ A L V P S +SG
Sbjct: 95 -ERTSAMLTVRAMP---SGPSSG 113
Score = 45.4 bits (108), Expect = 8e-07
Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 13/101 (12%)
Query: 120 NTNPMTKQMAFLEVV-IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
++ + A L V +P + + EG +A L C+ + W + ++
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLR--NEEATEGATAVLRCELSK--MAPVEWWK-GHE 56
Query: 179 EIIVRSNPPSSQKVFSVESEVLSLT--KVTRSEMGAYQCIA 217
+ + + L + + G Y C+
Sbjct: 57 TL-----RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC 92
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 52.3 bits (124), Expect = 3e-08
Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 15/129 (11%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAF-LEVVIPPDISSEETSGDMMVPEGGSAKLV 159
T + V+ G Y+ ++ + Q+ L V PP +S + P +L+
Sbjct: 255 TFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELL 314
Query: 160 CKAKG-YPTP--KITWRREDNKEIIVRSNPPSSQKV---------FSVESEVLSLTKVTR 207
C YP+ ++ W + S+ L VT
Sbjct: 315 CLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSG-HLQPPPVTT 373
Query: 208 SEMGA-YQC 215
+ GA Y C
Sbjct: 374 EQHGARYAC 382
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 48.9 bits (117), Expect = 5e-08
Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 38/133 (28%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
L+ + + +G F CV+++ +S++ W
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSH-------------------------ESASDPAMW 43
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+ +++R T + L +R D G + V
Sbjct: 44 TVGGKT---------VGSSSRFQATR-QGRKYILVVREAAPSDAGEVVFSVRG---LTSK 90
Query: 129 AFLEVVIPPDISS 141
A L V SS
Sbjct: 91 ASLIVRERSGPSS 103
Score = 45.5 bits (108), Expect = 8e-07
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 9/76 (11%)
Query: 147 DMMVPEGGSAKLVCK-AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT-- 203
M V EG S C + + W K + SS+ + + L
Sbjct: 17 TMEVLEGESCSFECVLSHESASDPAMWTV-GGKTV-----GSSSRFQATRQGRKYILVVR 70
Query: 204 KVTRSEMGAYQCIAAN 219
+ S+ G
Sbjct: 71 EAAPSDAGEVVFSVRG 86
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 48.1 bits (115), Expect = 9e-08
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
++ + V +G +L + ++ W + + +EI S
Sbjct: 10 MDEKKSTAFQKKLEP-AYQVSKGHKIRLTVELAD-HDAEVKWLK-NGQEI------QMSG 60
Query: 191 KVFSVESE----VLSLTKVTRSEMGAYQCIAAN 219
+ ES L++++ + ++ AYQC+
Sbjct: 61 SKYIFESIGAKRTLTISQCSLADDAAYQCVVGG 93
Score = 35.8 bits (83), Expect = 0.002
Identities = 16/112 (14%), Positives = 27/112 (24%), Gaps = 37/112 (33%)
Query: 9 PDFLYPLE-NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
F LE +++G T + + +V
Sbjct: 16 TAFQKKLEPAYQVSKGHKIRLTVELAD---------------------------HDAEVK 48
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
W+K + I + + + TL I D Y C V
Sbjct: 49 WLKNGQE---------IQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV 91
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 47.7 bits (114), Expect = 1e-07
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 43/138 (31%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
F L+++ + +G A CV++ S A V W
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLS---------------------------SVAAPVKW 41
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+ +V+ + S+ + L +R++R +D G Y C
Sbjct: 42 CYGN---------NVLRPGDKYSLRQ-EGAMLELVVRNLRPQDSGRYSCSFGD---QTTS 88
Query: 129 AFLEVVIPPDISSEETSG 146
A L V P S +SG
Sbjct: 89 ATLTVTALP---SGPSSG 103
Score = 45.0 bits (107), Expect = 1e-06
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
P D+ V EGG+A L C P + W N + P +
Sbjct: 8 PVRFQEALK--DLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVL-----RPGDKYSLRQ 58
Query: 196 ESEVLSLT--KVTRSEMGAYQCIA 217
E +L L + + G Y C
Sbjct: 59 EGAMLELVVRNLRPQDSGRYSCSF 82
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 49.5 bits (118), Expect = 1e-07
Identities = 31/151 (20%), Positives = 49/151 (32%), Gaps = 17/151 (11%)
Query: 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVI-----PPDISSEETSG 146
I S+ E G Y C ++ ++ LE+V+ P +S
Sbjct: 52 QELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLS---AQP 108
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+V GG+ L C ++ +E E N S + S+ V+
Sbjct: 109 SPVVNSGGNVTLQCDSQVAF-DGFILCKEGEDEHPQCLN--SQPHARGSSRAIFSVGPVS 165
Query: 207 RSEMGAYQCIAANGVPPTV----SKRLMLHV 233
S Y+C A + P S L L V
Sbjct: 166 PSRRWWYRCYAYDSNSPYEWSLPSDLLELLV 196
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 47.4 bits (113), Expect = 1e-07
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 9/86 (10%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
P I S + + L C+ TW + D +++ S V +
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYK-DGQKV-----EESELLVVKM 60
Query: 196 ESEVLSLT--KVTRSEMGAYQCIAAN 219
+ L + + G ++C
Sbjct: 61 DGRKHRLILPEAKVQDSGEFECRTEG 86
Score = 40.8 bits (96), Expect = 3e-05
Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 42/135 (31%)
Query: 9 PDFLYPLE--NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKV 66
L P + ++T + TC ++ +
Sbjct: 9 VHILSPQDKVSLTFTTSERVVLTCELSRVDF---------------------------PA 41
Query: 67 AWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK 126
W K K + + L V D L + + +D G + C+
Sbjct: 42 TWYKDGQK---------VEESELLVVKM-DGRKHRLILPEAKVQDSGEFECRTEG---VS 88
Query: 127 QMAFLEVVIPPDISS 141
+ V P SS
Sbjct: 89 AFFGVTVQDPSGPSS 103
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 49.0 bits (117), Expect = 1e-07
Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 22/146 (15%)
Query: 98 NTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVI-----PPDISSEETSGDMMVP 151
+ L I +++R G Y C N + + LE+V P +S V
Sbjct: 50 DQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLS---AQPGPAVS 106
Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
GG L C+ + + +E + + F + VT + G
Sbjct: 107 SGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPE-RWYRASF-------PIITVTAAHSG 157
Query: 212 AYQCIAANGVPPTV----SKRLMLHV 233
Y+C + + P + S L L V
Sbjct: 158 TYRCYSFSSRDPYLWSAPSDPLELVV 183
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 47.3 bits (113), Expect = 1e-07
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
P I + D V G ++ + ++ W + + + R + ++ F
Sbjct: 8 PVLIVTPLE--DQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVE--LTREDSFKARYRFKK 62
Query: 196 ESEVLSLT--KVTRSEMGAYQCIAANG 220
+ + L V + + G YQ I G
Sbjct: 63 DGKRHILIFSDVVQEDRGRYQVITNGG 89
Score = 42.7 bits (101), Expect = 7e-06
Identities = 21/128 (16%), Positives = 31/128 (24%), Gaps = 42/128 (32%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
+ PLE+ + G V+ G V W
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEVSEEGAQ---------------------------VMW 41
Query: 69 IKADTKAVLAIHEHVITNNARLSVTH---NDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125
+K + +T + D L V +EDRG Y
Sbjct: 42 MKNGVE---------LTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT-NGGQC 91
Query: 126 KQMAFLEV 133
+ A L V
Sbjct: 92 E--AELIV 97
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 49.5 bits (119), Expect = 1e-07
Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 37/141 (26%)
Query: 98 NTWTLNIRSVRREDRGYYMCQV-NTNPM-------TKQMAFLEV----------VIPPDI 139
+TL I + D Y CQ NP T+ + V + PP
Sbjct: 69 TDFTLTISDLECADAATYYCQSTYENPTYVSFGGGTE----VGVKGDPVAPTVLIFPP-- 122
Query: 140 SSEETSGDMMVPEGGSAKLVCKA-KGYPTPKITWRREDN--KEIIVRSNPPSSQK--VFS 194
S++ + G+ +VC A K +P +TW + I S P + ++
Sbjct: 123 SADLVA-------TGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYN 175
Query: 195 VESEVLSLTKVTRSEMGAYQC 215
+ S L+LT + Y C
Sbjct: 176 LSS-TLTLTSTEYNSHKEYTC 195
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 47.3 bits (113), Expect = 1e-07
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
++ V E G+A CK +P +TWR+ E+ S + S E L LT
Sbjct: 17 NLQVEEKGTAVFTCKT-EHPAATVTWRK-GLLEL-----RASGKHQPSQEGLTLRLTISA 69
Query: 205 VTRSEMGAYQCIAAN 219
+ +++ Y C
Sbjct: 70 LEKADSDTYTCDIGQ 84
Score = 45.4 bits (108), Expect = 6e-07
Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 41/134 (30%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
F L N+ + + A+FTC + P A V W
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKTEH-----------------------P----AATVTW 41
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
K + + + + + T L I ++ + D Y C + +
Sbjct: 42 RKGL---------LELRASGKHQPS-QEGLTLRLTISALEKADSDTYTCDIGQ---AQSR 88
Query: 129 AFLEV-VIPPDISS 141
A L V SS
Sbjct: 89 AQLLVQGRRSGPSS 102
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 46.9 bits (112), Expect = 3e-07
Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
P I D V G +L C+ TP + W + D K I S +
Sbjct: 8 PAAIIKPLE--DQWVAPGEDVELRCELSRAGTP-VHWLK-DRKAI-----RKSQKYDVVC 58
Query: 196 ESEVLSLT--KVTRSEMGAYQCIAANG 220
E + L + + G Y C
Sbjct: 59 EGTMAMLVIRGASLKDAGEYTCEVEAS 85
Score = 44.6 bits (106), Expect = 2e-06
Identities = 26/138 (18%), Positives = 40/138 (28%), Gaps = 43/138 (31%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
+ PLE+ +A G D C ++ + V W
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSR---------------------------AGTPVHW 41
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+K I + + V + L IR +D G Y C+V +
Sbjct: 42 LKDR---------KAIRKSQKYDVVC-EGTMAMLVIRGASLKDAGEYTCEVE-ASKST-- 88
Query: 129 AFLEVVIPPDISSEETSG 146
A L V S +SG
Sbjct: 89 ASLHVEEKA---SGPSSG 103
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 46.2 bits (110), Expect = 3e-07
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 40/126 (31%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
F +V +A G A+F + + +KV W
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAET---------------------------ERAGVKVRW 41
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+ + I+ + + + + TL +R V D+G Y + +K
Sbjct: 42 QRGGSD---------ISASNKYGLAT-EGTRHTLTVREVGPADQGSYAVIAGS---SKVK 88
Query: 129 AFLEVV 134
L+V+
Sbjct: 89 FDLKVI 94
Score = 45.8 bits (109), Expect = 4e-07
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE----VLSL 202
+ V G A + + K+ W+R +I +S K + + +E L++
Sbjct: 17 SVEVAAGSPAVFEAETER-AGVKVRWQR-GGSDI------SASNK-YGLATEGTRHTLTV 67
Query: 203 TKVTRSEMGAYQCIAAN 219
+V ++ G+Y IA +
Sbjct: 68 REVGPADQGSYAVIAGS 84
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 46.1 bits (110), Expect = 3e-07
Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 9/75 (12%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
+ V G +A + P W+ + + S + + L
Sbjct: 14 GVEVFVGETAHFEIEL-SEPDVHGQWKL-KGQPL-----AASPDCEIIEDGKKHILILHN 66
Query: 205 VTRSEMGAYQCIAAN 219
G AAN
Sbjct: 67 CQLGMTGEVSFQAAN 81
Score = 41.9 bits (99), Expect = 9e-06
Identities = 16/125 (12%), Positives = 28/125 (22%), Gaps = 40/125 (32%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
+ PL V + G A F ++ + W
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELSE---------------------------PDVHGQW 38
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+ + + D L + + + G Q TK
Sbjct: 39 KLKGQP---------LAASPDCEIIE-DGKKHILILHNCQLGMTGEVSFQAAN---TKSA 85
Query: 129 AFLEV 133
A L+V
Sbjct: 86 ANLKV 90
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 46.6 bits (111), Expect = 3e-07
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
D G +L C+ + W + + +EII P S+ VE + L
Sbjct: 16 DTTAYCGERVELECEVSE-DDANVKWFK-NGEEII---PGPKSRYRIRVEGKKHILIIEG 70
Query: 205 VTRSEMGAYQCIAANG 220
T+++ Y + G
Sbjct: 71 ATKADAAEYSVMTTGG 86
Score = 42.3 bits (100), Expect = 9e-06
Identities = 18/133 (13%), Positives = 26/133 (19%), Gaps = 38/133 (28%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
LE+ T G C V+ V W
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVSEDDA---------------------------NVKW 40
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
K + + + L I + D Y +
Sbjct: 41 FKNGEEIIPGPKSRY--------RIRVEGKKHILIIEGATKADAAEYSVMTTG---GQSS 89
Query: 129 AFLEVVIPPDISS 141
A L V + SS
Sbjct: 90 AKLSVDLKSGPSS 102
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon,
T-cell receptor, signalling, IMMU; 2.50A {Cricetulus
migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Length = 213
Score = 48.4 bits (116), Expect = 4e-07
Identities = 38/140 (27%), Positives = 54/140 (38%), Gaps = 36/140 (25%)
Query: 98 NTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF-----LEV----------VIPPDISS 141
+ I S+ ED G Y CQ P T F LE+ + PP SS
Sbjct: 69 RDSSFTISSLESEDIGSYYCQQYYNYPWT----FGPGTKLEIKRADAKPTVSIFPP--SS 122
Query: 142 EETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDN--KEIIVRSNPPSSQK--VFSV 195
E+ GSA LVC YP + W+ + + ++ +++S K +S+
Sbjct: 123 EQLG-------TGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSL 175
Query: 196 ESEVLSLTKVTRSEMGAYQC 215
S LSLTK Y C
Sbjct: 176 SS-TLSLTKADYERHNLYTC 194
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 46.2 bits (110), Expect = 4e-07
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--KVTR 207
V +GG + V + P ++ W + + +EI PS++ +F + L
Sbjct: 20 VDKGGRVRFVVEL-ADPKLEVKWYK-NGQEI-----RPSTKYIFEHKGCQRILFINNCQM 72
Query: 208 SEMGAYQCIAAN 219
++ Y A +
Sbjct: 73 TDDSEYYVTAGD 84
Score = 42.0 bits (99), Expect = 1e-05
Identities = 16/130 (12%), Positives = 29/130 (22%), Gaps = 41/130 (31%)
Query: 9 PDFLYPLE-NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
F L+ + +G F + + ++V
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVELAD---------------------------PKLEVK 40
Query: 68 WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
W K + I + + H L I + + D Y +
Sbjct: 41 WYKNGQE---------IRPSTKYIFEH-KGCQRILFINNCQMTDDSEYYVTAGDEKCS-- 88
Query: 128 MAFLEVVIPP 137
L V P
Sbjct: 89 -TELFVRSGP 97
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 46.2 bits (110), Expect = 4e-07
Identities = 22/129 (17%), Positives = 31/129 (24%), Gaps = 41/129 (31%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
F L+ ++G A C + S V W
Sbjct: 9 ARFTQDLKTKEASEGATATLQCEL----------------------------SKVAPVEW 40
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
K + + R S+ D L I + D G Y C +
Sbjct: 41 KKGPET---------LRDGGRYSLKQ-DGTRCELQIHDLSVADAGEYSCMCGQ---ERTS 87
Query: 129 AFLEVVIPP 137
A L V P
Sbjct: 88 ATLTVRALP 96
Score = 46.2 bits (110), Expect = 5e-07
Identities = 12/106 (11%), Positives = 31/106 (29%), Gaps = 22/106 (20%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
P + + EG +A L C+ + W++ + + +
Sbjct: 8 PARFTQDLK--TKEASEGATATLQCELS--KVAPVEWKK-GPETL-----RDGGRYSLKQ 57
Query: 196 ESEVLSLT--KVTRSEMGAYQCIAAN----------GVPPTVSKRL 229
+ L ++ ++ G Y C+ +P ++
Sbjct: 58 DGTRCELQIHDLSVADAGEYSCMCGQERTSATLTVRALPARFTEGS 103
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 48.5 bits (116), Expect = 4e-07
Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 37/155 (23%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEV----------VIPPDISS 141
+TL I V ED G Y C + TK LE+ + PP SS
Sbjct: 107 TDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTK----LELKRADAAPTVSIFPP--SS 160
Query: 142 EETSGDMMVPEGGSAKLVCKAKGY--PTPKITWRRED----NKEIIVRSNPPSSQKVFSV 195
E+ + G A +VC + + W+ + N + ++ S +S+
Sbjct: 161 EQLT-------SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM 213
Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVSKRL 229
S L+LTK +Y C A + + K
Sbjct: 214 SS-TLTLTKDEYERHNSYTCEATHKTSTSPIVKSF 247
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 46.5 bits (110), Expect = 5e-07
Identities = 18/107 (16%), Positives = 27/107 (25%), Gaps = 21/107 (19%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVC---KAKGYPTPKITWRREDNKEI----IVRSNPPS 188
P C G P P + W + + + +
Sbjct: 3 MPASVQLH--------TAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLE 53
Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHV 233
+V L L + T G Y +AAN G S +M
Sbjct: 54 PAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG---QASASIMAAF 97
Score = 31.8 bits (72), Expect = 0.079
Identities = 7/55 (12%), Positives = 12/55 (21%), Gaps = 3/55 (5%)
Query: 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDISSEE 143
+ L + + G Y NP + P + E
Sbjct: 54 PAANETVRHGCLRLNQPTHVNNGNYTLLA-ANPFGQASASIMAAFMDNPFEFNPE 107
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 47.8 bits (113), Expect = 5e-07
Identities = 23/146 (15%), Positives = 36/146 (24%), Gaps = 14/146 (9%)
Query: 99 TWTLNIRSVRREDRGYYMCQVNTNPMTKQM-AFLEVVIPPDISSEETSGDMMVPEGGSAK 157
W RE +C T Q + PD E P G +
Sbjct: 50 RWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPD-RVELMPLPPWQPVGENFT 108
Query: 158 LVCKAKG-YPTPK--ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
L C+ G P +T R + ++R + ++ +
Sbjct: 109 LSCRVPGAGPRASLTLTLLRGA--QELIRRSFAGEPPRARGAVLTATVLARREDHGANFS 166
Query: 215 CIAAN-------GVPPTVSKRLMLHV 233
C A G+ S L
Sbjct: 167 CRAELDLRPHGLGLFENSSAPRELRT 192
Score = 35.0 bits (80), Expect = 0.009
Identities = 12/88 (13%), Positives = 19/88 (21%), Gaps = 12/88 (13%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
V GGS L C + + R + L +
Sbjct: 11 VAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQR----------GLRWLARQLVDIR 60
Query: 207 RSEMGAYQCIAANGVPPTVSKRLMLHVH 234
E C T+ R ++
Sbjct: 61 EPE-TQPVCFFRCA-RRTLQARGLIRTF 86
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 46.4 bits (110), Expect = 5e-07
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 58 PTDSSAMKVAWIKADTKAVLAIHEH----VITNNARLSVTHNDANT----WTLNIRSVRR 109
+ ++ W + +A+ + + RL +L + +R
Sbjct: 29 MEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRV 88
Query: 110 EDRGYYMCQVNTNPM--TKQMAFLEVVIPP 137
ED G Y C T P +L V+ P
Sbjct: 89 EDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 26.7 bits (59), Expect = 3.5
Identities = 16/122 (13%), Positives = 29/122 (23%), Gaps = 28/122 (22%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPK-----ITWRREDNKEIIVRSN 185
+ V P + G S L C + +TW R + +
Sbjct: 2 VVVQAPTQVP---------GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFH 52
Query: 186 PPSSQKV-----FSVESEV---------LSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231
+ L + + + G Y C+ + S + L
Sbjct: 53 QTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL 112
Query: 232 HV 233
V
Sbjct: 113 RV 114
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 46.0 bits (109), Expect = 6e-07
Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 33/115 (28%)
Query: 17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV 76
+ A C N S + V W + +
Sbjct: 3 KIQAYFNETADLPCQFANSQ---------------------NQSLSELVVFWQDQENLVL 41
Query: 77 LAIHEHVITNNARLSVTHN--------DANTWTLNIRSVRREDRGYYMCQVNTNP 123
V + H+ D+++WTL + +++ +D+G Y C ++
Sbjct: 42 N----EVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKK 92
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 45.9 bits (109), Expect = 6e-07
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
+VV + + ++ G SA L C+ ++TW + D K++ SS+
Sbjct: 8 KVVFAKEQPAHR---EVQAEAGASATLSCEVAQ-AQTEVTWYK-DGKKL-----SSSSKV 57
Query: 192 VFSVESEVLSLT--KVTRSEMGAYQCIAAN 219
L + ++E G Y C A
Sbjct: 58 RVEAVGCTRRLVVQQAGQAEAGEYSCEAGG 87
Score = 35.1 bits (81), Expect = 0.003
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 37/113 (32%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
V G A +C V +V W
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQ-----------------------AQ----TEVTW 44
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
K K +++++++ V T L ++ + + G Y C+
Sbjct: 45 YKDGKK---------LSSSSKVRVEA-VGCTRRLVVQQAGQAEAGEYSCEAGG 87
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 45.9 bits (109), Expect = 6e-07
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 134 VIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF 193
+ I + L C+ P ++ W + D +E+ S +
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTK-DGEEV-----VESPALLL 61
Query: 194 SVESEVLSLT--KVTRSEMGAYQCIAAN 219
E V L V + G Y C +
Sbjct: 62 QKEDTVRRLVLPAVQLEDSGEYLCEIDD 89
Score = 40.9 bits (96), Expect = 4e-05
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 42/138 (30%)
Query: 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK 70
+ V + + TC + P +V W K
Sbjct: 16 YPSGKVYVAAVRLERVVLTCELCR-----------------------PW----AEVRWTK 48
Query: 71 ADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF 130
+ + + L + + L + +V+ ED G Y+C+++ +
Sbjct: 49 DGEE---------VVESPALLLQK-EDTVRRLVLPAVQLEDSGEYLCEIDDESAS---FT 95
Query: 131 LEVVIPP--DISSEETSG 146
+ V PP I S +SG
Sbjct: 96 VTVTEPPVRIIYSGPSSG 113
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 45.7 bits (108), Expect = 9e-07
Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 17/122 (13%)
Query: 36 GGHRVSSSVTDTHVNTGGSIVFPTDSSAMK----VAWIKADTKAVLAIHEHVITN----- 86
G + V +G ++ S + + W + ++
Sbjct: 3 SGSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKF 62
Query: 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA--FLEVVIP---PDISS 141
R+ + D + L I V++ED Y+ +V +Q L+V+ P P I
Sbjct: 63 KGRVRL---DPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKI 119
Query: 142 EE 143
E+
Sbjct: 120 EK 121
Score = 34.9 bits (80), Expect = 0.005
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 147 DMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKV--------FSVES 197
M V G + L ++TW +++I+ + S +S
Sbjct: 13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQS 72
Query: 198 EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
L ++KV + + Y ++ L V
Sbjct: 73 GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVL 109
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 46.4 bits (110), Expect = 1e-06
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 18/152 (11%)
Query: 93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA-FLEVVI-----PPDISSEETSG 146
N +I S+ G Y C + + + LE+V+ P +S+ +
Sbjct: 51 PLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSP- 109
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEV-LSLTKV 205
+V G + L C ++ + E + ++ + SQ S + + + V
Sbjct: 110 --VVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLD---SQLTPSGQFQALFPVGPV 163
Query: 206 TRSEMGAYQCIAANGVPPTV----SKRLMLHV 233
T S +C + V S L + V
Sbjct: 164 TPSHRWMLRCYGSRRHILQVWSEPSDLLEIPV 195
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 46.9 bits (111), Expect = 2e-06
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 16/173 (9%)
Query: 66 VAWIKADTKAVLAIHEHVITNNARLSV----THNDANTWTLNIRSVRREDRGYYMCQVN- 120
+ W + A I+ + R++ T + ++++I ++ D G Y C
Sbjct: 36 IQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFR 95
Query: 121 -----TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY--PTPKITWR 173
T + L V P P + C++ G+ + W
Sbjct: 96 KGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATP-QHTVSFTCESHGFSPRDITLKWF 154
Query: 174 REDNKEIIVRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224
+ N+ ++N + +S+ S + C A+
Sbjct: 155 KNGNELSDFQTNVDPVGESVSYSIHS-TAKVVLTREDVHSQVICEVAHVTLQG 206
Score = 27.2 bits (60), Expect = 5.7
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 138 DISSEETSGDMMVPEGGSAKLVCKAKGY-PTPKITWRREDNK--EIIVRSNPPSSQKVFS 194
++ + + V G SA L C P I W R E+I +V +
Sbjct: 3 ELQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTT 62
Query: 195 V 195
V
Sbjct: 63 V 63
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 46.1 bits (109), Expect = 2e-06
Identities = 25/145 (17%), Positives = 41/145 (28%), Gaps = 14/145 (9%)
Query: 94 HNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEETSGDM--MV 150
N I + G Y C ++ L++V+ + S V
Sbjct: 54 PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEV 113
Query: 151 PEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEM 210
G C+ + +E + R Q F L VT +
Sbjct: 114 ISGEKVTFYCRLDTATS-MFLLLKEGRSSHVQRGY-GKVQAEF-------PLGPVTTAHR 164
Query: 211 GAYQCIAA--NGVPPTVSKRLMLHV 233
G Y+C + N S+ + L V
Sbjct: 165 GTYRCFGSYNNHAWSFPSEPVKLLV 189
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 45.7 bits (108), Expect = 3e-06
Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 11/135 (8%)
Query: 86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF---LEVVIPPDISS 141
R S + L ++ ++ +D Y+C V + + F +++ P I +
Sbjct: 55 EKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIPTFGRGTSLIVHPYIQN 114
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV-ESEVL 200
+ + + S K VC + + + +D+ I + + V + +
Sbjct: 115 PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYI------TDKCVLDMRSMDFK 168
Query: 201 SLTKVTRSEMGAYQC 215
S + V S + C
Sbjct: 169 SNSAVAWSNKSDFAC 183
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 45.7 bits (109), Expect = 3e-06
Identities = 35/163 (21%), Positives = 56/163 (34%), Gaps = 33/163 (20%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF------LEV-------- 133
R S + L+I +++ ED Y+C V + + + V
Sbjct: 64 DRFSG-SSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTP 122
Query: 134 ---VIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEII--VRSNP 186
V PP SSEE A LVC P+ + W+ + I V ++
Sbjct: 123 TLTVFPP--SSEELK-------ENKATLVCLISNFSPSGVTVAWKA-NGTPITQGVDTSN 172
Query: 187 PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL 229
P+ + + S L LT ++ C + TV K L
Sbjct: 173 PTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHE-GDTVEKSL 214
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 46.4 bits (111), Expect = 3e-06
Identities = 37/172 (21%), Positives = 58/172 (33%), Gaps = 35/172 (20%)
Query: 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEV------- 133
R S + +TL I V +D Y CQ + TK L++
Sbjct: 63 PDRFSGS-GSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTK----LDLKRADAAP 117
Query: 134 -VIPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEII--VRSNPP- 187
V SSE+ + G A +VC + P + W + D E V ++
Sbjct: 118 TVSIFPPSSEQLT-------SGGASVVCFLNNFYPKDINVKW-KIDGSERQNGVLNSWTD 169
Query: 188 --SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237
S +S+ S L+LTK +Y C A + + + C
Sbjct: 170 QDSKDSTYSMSS-TLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEV 220
Score = 36.8 bits (86), Expect = 0.004
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 25/102 (24%)
Query: 89 RLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF------LEV----VIPP 137
R +++ ++A NT L + S+R D Y C + + A+ + V PP
Sbjct: 285 RFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPP 344
Query: 138 DI-----SSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITW 172
+ S + L C KGY P P +TW
Sbjct: 345 SVYPLAPGSAAAA-------ASMVTLGCLVKGYFPEPVTVTW 379
Score = 30.3 bits (69), Expect = 0.51
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
TL + E Y C+ T + ++ E+ G ++ P GGS KL C
Sbjct: 182 TLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKP-GGSLKLSC 240
Query: 161 KAKGY 165
A G+
Sbjct: 241 TASGF 245
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 45.4 bits (108), Expect = 3e-06
Identities = 35/140 (25%), Positives = 43/140 (30%), Gaps = 35/140 (25%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPM--------TKQMAFLEV-----------VIPPD 138
T TL I + ED Y C + T+ L V V PP
Sbjct: 67 TTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQ----LTVLRGPKSSPKVTVFPP- 121
Query: 139 ISSEETSGDMMVPEGGSAKLVCKA-KGYPT-PKITWRREDN-KEIIVRSNPPSSQKVFSV 195
S EE A LVC YP +TW+ V++ PS Q +
Sbjct: 122 -SPEELR-------TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYM 173
Query: 196 ESEVLSLTKVTRSEMGAYQC 215
S LSLT C
Sbjct: 174 TSSYLSLTADQWKSHNRVSC 193
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 45.3 bits (107), Expect = 4e-06
Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 20/153 (13%)
Query: 93 THNDANTWTLNIRSVRREDRGYYMCQ--VNTNPM--TKQMAFLEVVI----PPDISSEET 144
H+ + +I + ++ G Y C V +P + L++VI S +
Sbjct: 56 HHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQP 115
Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK 204
V G + L C ++ RE P F + L
Sbjct: 116 GP--TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQAD---FPLGP 169
Query: 205 VTRSEMGAYQCIAANGVPPTV----SKRLMLHV 233
T G Y+C + P S L++ V
Sbjct: 170 ATHG--GTYRCFGSFHDSPYEWSKSSDPLLVSV 200
Score = 37.6 bits (87), Expect = 0.002
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
+V + L C + RE +R V S++++T+
Sbjct: 18 LVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKAN---FSISRMTQD 73
Query: 209 EMGAYQCIAANGVPPTV----SKRLMLHV 233
G Y+C + P S L + +
Sbjct: 74 LAGTYRCYGSVTHSPYQVSAPSDPLDIVI 102
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 44.8 bits (106), Expect = 5e-06
Identities = 26/150 (17%), Positives = 38/150 (25%), Gaps = 24/150 (16%)
Query: 94 HNDANTWTLNIRSVRREDRGYYMCQVNT--------NPMTKQMAFLEVVIPPDISSEETS 145
N I + G Y C N + L V D +
Sbjct: 51 PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLD-----LVVTEMYDTPTLSVH 105
Query: 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
V G C+ + +E V+ Q F L V
Sbjct: 106 PGPEVISGEKVTFYCRLDTATS-MFLLLKEGRSS-HVQRGYGKVQAEF-------PLGPV 156
Query: 206 TRSEMGAYQCIAA--NGVPPTVSKRLMLHV 233
T + G Y+C + N S+ + L V
Sbjct: 157 TTAHRGTYRCFGSYNNHAWSFPSEPVKLLV 186
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 44.9 bits (105), Expect = 5e-06
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
P + E + V G S +L C+ + WR D V+S+ S
Sbjct: 7 PLQVEPPEPV--VAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRS----- 59
Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
VL++ + S G C+ + G T + L V+
Sbjct: 60 ----VLTVRNASLSAAGTRVCVGSCG-GRTFQHTVQLLVY 94
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 45.0 bits (107), Expect = 5e-06
Identities = 37/160 (23%), Positives = 53/160 (33%), Gaps = 41/160 (25%)
Query: 94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEV-----------VIP 136
+ L I + ED Y C + +N TK L V + P
Sbjct: 67 SLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTK----LTVLGQPKSSPTVTLFP 122
Query: 137 PDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEII--VRSNPPSSQK- 191
P SSEE S A LVC YP + W+ D + + + PS Q
Sbjct: 123 P--SSEELS-------TAKATLVCTITDFYPGVVTVDWKV-DGTPVTAGMETTQPSKQSN 172
Query: 192 -VFSVESEVLSLTKVTRSEMGAYQCIAANG---VPPTVSK 227
+ S L+LT +Y C + T+S+
Sbjct: 173 NKYMASS-YLTLTARAWERHSSYSCQVTHEGHSSNKTLSR 211
>3sob_L Antibody light chain; beta propeller, protein binding-immune system
complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Length = 237
Score = 44.2 bits (105), Expect = 1e-05
Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 39/156 (25%)
Query: 98 NTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF-----LEV----------VIPPDISS 141
+TL I S++ ED Y CQ T P T F +E+ + PP S
Sbjct: 92 TDFTLTISSLQPEDFATYYCQQSYTTPPT----FGQGTKVEIKRTVAAPSVFIFPP--SD 145
Query: 142 EETSGDMMVPEGGSAKLVCKA-KGYPTP-KITWRREDNKEI---IVRSNPPSSQK--VFS 194
E+ G+A +VC YP K+ W+ DN S K +S
Sbjct: 146 EQLK-------SGTASVVCLLNNFYPREAKVQWKV-DNALQSGNSQESVTEQDSKDSTYS 197
Query: 195 VESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVSKRL 229
+ S L+L+K + Y C + G+ V+K
Sbjct: 198 LSS-TLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 232
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 43.8 bits (103), Expect = 2e-05
Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 22/154 (14%)
Query: 93 THNDANTWTLNIRSVRREDRGYYMCQ--VNTNPMTKQM--AFLEVVI-----PPDISSEE 143
H+ + +I + ++ G Y C V +P L++VI P +S++
Sbjct: 55 HHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQP 114
Query: 144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT 203
V G S L C ++ RE S P F + L
Sbjct: 115 GP---TVLAGESVTLSCSSR-SSYDMYHLSREGEAHERRFSAGPKVNGTFQAD---FPLG 167
Query: 204 KVTRSEMGAYQCIAANGVPPTV----SKRLMLHV 233
T G Y+C + P S L++ V
Sbjct: 168 PATHG--GTYRCFGSFRDSPYEWSNSSDPLLVSV 199
Score = 40.3 bits (94), Expect = 2e-04
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 8/93 (8%)
Query: 149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
+V + L C + RE + + V S+ + +
Sbjct: 17 LVKSEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKAN---FSIGPMMQD 72
Query: 209 EMGAYQCIAANGVPPTV----SKRLMLHVHCTY 237
G Y+C + P S L + + Y
Sbjct: 73 LAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLY 105
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens}
PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A
3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L
3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Length = 216
Score = 43.4 bits (103), Expect = 2e-05
Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 38/156 (24%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPM-------TKQMAFLEV----------VIPPDIS 140
+ TL I ++ D Y C + + TK LE+ + PP S
Sbjct: 70 TSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTK----LEIKRTVAAPSVFIFPP--S 123
Query: 141 SEETSGDMMVPEGGSAKLVCKA-KGYP-TPKITWRREDNKEII--VRSNPPSSQKVFS-- 194
E+ G+A +VC YP K+ W+ DN + + S
Sbjct: 124 DEQLK-------SGTASVVCLLNNFYPREAKVQWKV-DNALQSGNSQESVTEQDSKDSTY 175
Query: 195 VESEVLSLTKVTRSEMGAYQCIAA-NGVPPTVSKRL 229
S L+L+K + Y C G+ V+K
Sbjct: 176 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 211
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 41.7 bits (97), Expect = 2e-05
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 147 DMMVPEGGSAKLVCKAKGYP---TPKITWRREDNKEIIVRSNPP-----SSQKVFSVESE 198
+ V G A +V K G P I W + E+ +S S +V +
Sbjct: 21 SVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTV 80
Query: 199 VLSLTKVTRSEMGAYQCIAAN 219
L + KV + G Y+
Sbjct: 81 ELHIGKVVLGDRGYYRLEVKA 101
Score = 38.2 bits (88), Expect = 4e-04
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 31/130 (23%)
Query: 11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK 70
FL ++V++ G+DA+ VN + W K
Sbjct: 15 FLKKPDSVSVETGKDAVVVAKVNGKELPD-----------------------KPTIKWFK 51
Query: 71 ADTKAVLAIHEHVITNNARLSVTHNDAN---TWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
+ + +HN A+ T L+I V DRGYY +V
Sbjct: 52 GKWLELGSKSGARF----SFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDS 107
Query: 128 MAF-LEVVIP 136
F ++V P
Sbjct: 108 CGFNIDVEAP 117
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 43.0 bits (102), Expect = 2e-05
Identities = 37/141 (26%), Positives = 52/141 (36%), Gaps = 38/141 (26%)
Query: 98 NTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF-----LEV----------VIPPDISS 141
+TL I V +D Y CQ P+T F LE+ + PP S+
Sbjct: 68 TDFTLTIDPVEADDTAIYFCQQSWNGPLT----FGAGTKLELKRADAAPTVSIFPP--ST 121
Query: 142 EETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEI---IVRSNPPSSQK--VFS 194
E+ + G A +VC YP + W+ D E ++ S K +S
Sbjct: 122 EQLA-------TGGASVVCLMNNFYPRDISVKWKI-DGTERRDGVLDSVTDQDSKDSTYS 173
Query: 195 VESEVLSLTKVTRSEMGAYQC 215
+ S LSLTK Y C
Sbjct: 174 M-SSTLSLTKADYESHNLYTC 193
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 41.1 bits (96), Expect = 4e-05
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 14/113 (12%)
Query: 37 GHRVSSSVTDTHVNTGGSIVFP------TDSSAMKVAWIKADTKAVLAIHEHVITNNA-- 88
GH + G + + V W+ + I T +
Sbjct: 1 GHPTLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQ 60
Query: 89 ------RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI 135
RL V+H +L I +++ +DR +Y C+V + +I
Sbjct: 61 QAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKII 113
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 42.2 bits (100), Expect = 5e-05
Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 36/140 (25%)
Query: 98 NTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF-----LEV----------VIPPDISS 141
+ I ++ ED Y C + P T F LE+ + PP SS
Sbjct: 91 TDFVFTIENMLSEDVADYYCLQSDNLPYT----FGGGTNLEIKRADAAPTVSIFPP--SS 144
Query: 142 EETSGDMMVPEGGSAKLVCKA-KGYPTP-KITWRRED----NKEIIVRSNPPSSQKVFSV 195
E+ + G A +VC YP + W+ + N + ++ S +S+
Sbjct: 145 EQLT-------SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM 197
Query: 196 ESEVLSLTKVTRSEMGAYQC 215
S L+LTK +Y C
Sbjct: 198 SS-TLTLTKDEYERHNSYTC 216
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 41.9 bits (99), Expect = 6e-05
Identities = 24/157 (15%), Positives = 45/157 (28%), Gaps = 38/157 (24%)
Query: 89 RLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFL---------------- 131
+ V + +T TL I +V ++D Y C +
Sbjct: 68 KFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLD 127
Query: 132 -----EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRS 184
+ I +E + +C + + P KI W E I+ S
Sbjct: 128 ADVSPKPTIFLPSIAETKL-------QKAGTYLCLLEKFFPDVIKIHW-EEKKSNTILGS 179
Query: 185 NPPSSQKV--FSVESEVLSLTKVTRSEMG-AYQCIAA 218
++ K ++ S V + ++CI
Sbjct: 180 QEGNTMKTNDTYMKF---SWLTVPEKSLDKEHRCIVR 213
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 41.9 bits (98), Expect = 7e-05
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 21/147 (14%)
Query: 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQ----------VNTNPMTKQMAFLEVVIPPD 138
R SV D +N+ ++ ED Y C + L V PP
Sbjct: 64 RFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPK 123
Query: 139 ISSEETSGDMMVPEGGSAKLVCKAKGY--PTPKITWRREDNKEI---IVRSNPPSSQK-- 191
+S E S + A LVC A+G+ +++W + KE+ + +
Sbjct: 124 VSLFEPSKAEI-ANKQKATLVCLARGFFPDHVELSWWV-NGKEVHSGVSTDPQAYKESNY 181
Query: 192 VFSVESEVLSLTKVT-RSEMGAYQCIA 217
+S+ S L ++ + ++C
Sbjct: 182 SYSLSS-RLRVSATFWHNPRNHFRCQV 207
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 41.7 bits (98), Expect = 8e-05
Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 22/133 (16%)
Query: 98 NTWTLNIRSVRREDRGYYMC-QVNTNPMTKQMAF-----LEV---VIPPDISSEETSGDM 148
+TL I V ED G Y C Q + P T F LE+ P +S S +
Sbjct: 111 TDFTLKISRVEAEDLGIYYCVQGSHFPPT----FGAGTKLELKRADAAPTVSIFPPSSEQ 166
Query: 149 MVPEGGSAKLVCKAKG-YPTP-KITWRRED----NKEIIVRSNPPSSQKVFSVESEVLSL 202
+ G A +VC YP + W+ + N + ++ S +S+ S L+L
Sbjct: 167 L--TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTL 223
Query: 203 TKVTRSEMGAYQC 215
TK +Y C
Sbjct: 224 TKDEYERHNSYTC 236
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 41.1 bits (96), Expect = 9e-05
Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 8/131 (6%)
Query: 87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETS 145
R+S T N L I+ + ED Y+C NT + + P+I + + +
Sbjct: 58 KGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPA 117
Query: 146 GDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK 204
+ S K VC ++ ++ + I + + S +
Sbjct: 118 VYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDAYI------TDKTVLDMRSMDFKSNSA 171
Query: 205 VTRSEMGAYQC 215
V S + C
Sbjct: 172 VAWSNKSDFAC 182
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 41.6 bits (97), Expect = 1e-04
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 33/143 (23%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-----------LEVVIP 136
R S + +L I+S D Y+C + N F L+ V P
Sbjct: 89 KRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFP 148
Query: 137 PDI-----SSEETSGDMMVPEGGSAKLVCKAKGYPTP--KITWRREDNKEII--VRSNPP 187
P++ S E S A LVC A G+ +++W + KE+ V ++P
Sbjct: 149 PEVAVFEPSEAEIS------HTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQ 201
Query: 188 SSQKVFSVE------SEVLSLTK 204
++ ++ S L ++
Sbjct: 202 PLKEQPALNDSRYALSSRLRVSA 224
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 41.2 bits (97), Expect = 1e-04
Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 29/137 (21%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQM----AFLEV-----------VIPPDISSE 142
N TL I + D Y CQ + + + V + PP SSE
Sbjct: 68 NMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPP--SSE 125
Query: 143 ETSGDMMVPEGGSAKLVCKA-KGYP-TPKITWRRED--NKEIIVRSNPPSSQKVFSVESE 198
E A LVC YP +TW + + + + P S + S
Sbjct: 126 ELK-------TNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATS- 177
Query: 199 VLSLTKVTRSEMGAYQC 215
L++T + C
Sbjct: 178 YLTMTADAWKSRNTFIC 194
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 41.0 bits (96), Expect = 1e-04
Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 34/157 (21%)
Query: 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-----------LEVVIPP 137
+ + H TL + S ED +Y+C T+ + F L+ V PP
Sbjct: 66 KFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPP 125
Query: 138 DI-----SSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEII--VRSNPPS 188
++ S E S A LVC A G+ P +++W + KE+ V ++P
Sbjct: 126 EVAVFEPSEAEIS------HTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQP 178
Query: 189 SQKVFSVE------SEVLSLTKVT-RSEMGAYQCIAA 218
++ ++ S L ++ ++ ++C
Sbjct: 179 LKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ 215
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 40.7 bits (95), Expect = 1e-04
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 33/155 (21%)
Query: 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN------------PMTKQMAFLEVVIP 136
+ ++L + Y C + L V P
Sbjct: 61 GYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTP 120
Query: 137 PDI-----SSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEII--VRSNPP 187
P + S E + A LVC A+G +P +++W + KE+ V ++P
Sbjct: 121 PKVSLFEPSKAEIA------NKQKATLVCLARGFFPDHVELSWWV-NGKEVHSGVSTDPQ 173
Query: 188 SSQ---KVFSVESEVLSLTKVT-RSEMGAYQCIAA 218
+ + + + S L ++ + ++C
Sbjct: 174 AYKESNYSYCLSS-RLRVSATFWHNPRNHFRCQVQ 207
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 41.0 bits (95), Expect = 2e-04
Identities = 17/85 (20%), Positives = 22/85 (25%), Gaps = 8/85 (9%)
Query: 142 EETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVL 200
E G + G S L C + W S ++ L
Sbjct: 10 EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA-------GSHPSRWAGMGRRL 62
Query: 201 SLTKVTRSEMGAYQCIAANGVPPTV 225
L V + G Y C A TV
Sbjct: 63 LLRSVQLHDSGNYSCYRAGRPAGTV 87
Score = 30.6 bits (68), Expect = 0.46
Identities = 22/130 (16%), Positives = 29/130 (22%), Gaps = 40/130 (30%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
P +T G TC V W
Sbjct: 7 PAQEVARGVLTSLPGDSVTLTCPGVEP-------------------------EDNATVHW 41
Query: 69 IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
+ A + RL +RSV+ D G Y C P
Sbjct: 42 VL-RKPAAGSHPSRWAGMGRRLL------------LRSVQLHDSGNYSCYRAGRPAG--T 86
Query: 129 AFLEVVIPPD 138
L V +PP+
Sbjct: 87 VHLLVDVPPE 96
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 41.4 bits (97), Expect = 2e-04
Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 28/187 (14%)
Query: 57 FPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYM 116
+ +K W + A + + L + + Y
Sbjct: 276 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVS-----VLTVLHQDWLNGKEYK 330
Query: 117 CQVN----------TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY- 165
C+V+ T K V S +E + + L C KG+
Sbjct: 331 CKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKN-------QVSLTCLVKGFY 383
Query: 166 PTP-KITWRREDNKEIIVRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAAN-GV 221
P+ + W E ++ PP F + S L++ K + + C + +
Sbjct: 384 PSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYS-KLTVDKSRWQQGNVFSCSVMHEAL 442
Query: 222 PPTVSKR 228
+++
Sbjct: 443 HNHYTQK 449
Score = 29.5 bits (66), Expect = 0.91
Identities = 19/140 (13%), Positives = 41/140 (29%), Gaps = 16/140 (11%)
Query: 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMV 150
+V H +NT + D+ + E++ P + +
Sbjct: 211 NVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAP---------ELLGGPSVFLFPPKPKDTL 261
Query: 151 PEGGSAKLVCKAKGY--PTPKITW-RREDNKEI---IVRSNPPSSQKVFSVESEVLSLTK 204
+ ++ C P++ + D E+ + + V S VL++
Sbjct: 262 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVS-VLTVLH 320
Query: 205 VTRSEMGAYQCIAANGVPPT 224
Y+C +N P
Sbjct: 321 QDWLNGKEYKCKVSNKALPA 340
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 40.5 bits (95), Expect = 2e-04
Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 31/138 (22%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEV-----------VIPPDISSEE 143
NT +L + ++ +D Y C L V + PP SSEE
Sbjct: 66 NTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPP--SSEE 123
Query: 144 TSGDMMVPEGGSAKLVCKA-KGYP-TPKITWRREDNKEII--VRSNPPSSQK--VFSVES 197
A LVC YP + W+ D+ + V + PS Q ++ S
Sbjct: 124 LQ-------ANKATLVCLISDFYPGAVTVAWKA-DSSPVKAGVETTTPSKQSNNKYAASS 175
Query: 198 EVLSLTKVTRSEMGAYQC 215
LSLT +Y C
Sbjct: 176 -YLSLTPEQWKSHRSYSC 192
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 39.2 bits (91), Expect = 2e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 93 THNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
T + TL + + ED G Y C+ T P
Sbjct: 86 TEAELQDATLALHGLTVEDEGNYTCEFATFP 116
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 39.9 bits (93), Expect = 2e-04
Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 54/228 (23%)
Query: 18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL 77
T+ R TCVV + + +K W +
Sbjct: 13 DTLMISRTPEVTCVVVD----------------------VSHEDPEVKFNWYVDGVEVHN 50
Query: 78 AIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLE- 132
A T L + + Y C+V+ P+ K ++ +
Sbjct: 51 AK-----TKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKG 105
Query: 133 -------VVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVR 183
+PP S +E + + L C KG YP+ + W E +
Sbjct: 106 QPREPQVYTLPP--SRDELTKNQ-------VSLTCLVKGFYPSDIAVEWESNGQPENNYK 156
Query: 184 SNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAA-NGVPPTVSKR 228
+ PP F + S L++ K + + C + +++
Sbjct: 157 TTPPVLDSDGSFFLYS-KLTVDKSRWQQGNVFSCSVMHEALHNHYTQK 203
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 40.0 bits (93), Expect = 3e-04
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 85 TNNARLSVTHNDANT-WTLNIRSVRREDRGYYMCQVNTNPM-TKQMAF---LEVVIPPDI 139
R + N A+ +L+IR + D Y C + + + F V + P I
Sbjct: 57 KKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYI 116
Query: 140 SSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
+ + + + S K VC + + + + ++ +
Sbjct: 117 QNPDPAVYQLRDSKSSDKSVCLFTDFD-SQTNVSQSKDSDVYITDK 161
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 38.4 bits (89), Expect = 3e-04
Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 34/135 (25%)
Query: 9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
+ LE+V + G DA+F+ + S+ ++ W
Sbjct: 9 ARLVAGLEDVQVYDGEDAVFSLDL----------------------------STIIQGTW 40
Query: 69 IKADTKAVLA--IHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK 126
+ + + + V R + L + +V+ +D G + +
Sbjct: 41 FL-NGEELKSNEPEGQVEPGALRYRIEQ-KGLQHRLILHAVKHQDSGALVGFSCPG--VQ 96
Query: 127 QMAFLEVVIPPDISS 141
A L + SS
Sbjct: 97 DSAALTIQESSGPSS 111
Score = 30.7 bits (69), Expect = 0.12
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 8/81 (9%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNK----EIIVRSNPPSSQKVFSVESEVLSL 202
D+ V +G A + TW + E + P + + + L
Sbjct: 17 DVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRL 74
Query: 203 T--KVTRSEMGAYQCIAANGV 221
V + GA + GV
Sbjct: 75 ILHAVKHQDSGALVGFSCPGV 95
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen,
allergen, antimic bacteriolytic enzyme, glycosidase,
hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A
1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A
1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A
1rih_L 1p2c_A ...
Length = 213
Score = 39.9 bits (94), Expect = 3e-04
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 37/153 (24%)
Query: 98 NTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF-----LEV----------VIPPDISS 141
+TL+I SV ED G Y CQ N+ P T F LE+ + PP SS
Sbjct: 69 TDFTLSINSVETEDFGMYFCQQSNSWPYT----FGGGTKLEIKRADAAPTVSIFPP--SS 122
Query: 142 EETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDN--KEIIVRSNPPSSQK--VFSV 195
E+ + G A +VC YP + W+ + + + ++ S K +S+
Sbjct: 123 EQLT-------SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM 175
Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVSK 227
S L+LTK +Y C A + + K
Sbjct: 176 SS-TLTLTKDEYERHNSYTCEATHKTSTSPIVK 207
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 39.6 bits (92), Expect = 3e-04
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF---LEVVIPPDISSE 142
+ RL VT + + +L I + R D Y C +T T + F + + +I +
Sbjct: 58 SGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVLANIQNP 117
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYP 166
+ + + S K VC +
Sbjct: 118 DPAVYQLRDSKSSDKSVCLFTDFD 141
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 40.0 bits (93), Expect = 3e-04
Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 32/156 (20%)
Query: 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQ---------VNTNPMTKQMAFLEVVIPP 137
N R + + TL I+ R D Y+C + L+ V PP
Sbjct: 87 NDRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPP 146
Query: 138 DI-----SSEETSGDMMVPEGGSAKLVCKAKGYPTP--KITWRREDNKEII--VRSNPPS 188
++ S E S A LVC A G+ +++W + KE+ V ++P
Sbjct: 147 EVAVFEPSEAEIS------HTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQP 199
Query: 189 SQKVFSVE------SEVLSLTKVT-RSEMGAYQCIA 217
++ ++ S L ++ ++ ++C
Sbjct: 200 LKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQV 235
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 40.0 bits (93), Expect = 3e-04
Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 34/157 (21%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT-----------NPMTKQMAFLEVVIP 136
+ SV D + +TL I+ ED Y C + + L+ V P
Sbjct: 64 DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFP 123
Query: 137 PDI-----SSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEII--VRSNPP 187
P++ S E S A LVC A G YP +++W + KE+ V ++P
Sbjct: 124 PEVAVFEPSEAEIS------HTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQ 176
Query: 188 SSQKVFSVE------SEVLSLTKVT-RSEMGAYQCIA 217
++ ++ S L ++ ++ ++C
Sbjct: 177 PLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQV 213
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 40.3 bits (94), Expect = 3e-04
Identities = 24/182 (13%), Positives = 50/182 (27%), Gaps = 18/182 (9%)
Query: 57 FPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYM 116
D ++++W + + T R L I+ +
Sbjct: 267 VSEDDPDVQISWFVNNVEV-----HTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFK 321
Query: 117 CQVNTNPMTKQMAFLEV-----VIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP--K 169
C+VN + + V P + + M L C +
Sbjct: 322 CKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMT--KKQVTLTCMVTDFMPEDIY 379
Query: 170 ITWRREDNKEIIVRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVS 226
+ W E+ ++ P + + S L + K E +Y C + G+ +
Sbjct: 380 VEWTNNGKTELNYKNTEPVLDSDGSYFMYS-KLRVEKKNWVERNSYSCSVVHEGLHNHHT 438
Query: 227 KR 228
+
Sbjct: 439 TK 440
Score = 29.9 bits (67), Expect = 0.80
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 7/99 (7%)
Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY--PTPKITWRRE-DNKEI---IVRSN 185
++ P + ++ S + C P + +N E+ +++
Sbjct: 234 NLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTH 293
Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224
V S L + ++C N P
Sbjct: 294 REDYNSTLRVVS-ALPIQHQDWMSGKEFKCKVNNKDLPA 331
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 39.1 bits (90), Expect = 4e-04
Identities = 25/165 (15%), Positives = 40/165 (24%), Gaps = 45/165 (27%)
Query: 95 NDANTWTLNIRSV-RREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDM----- 148
+ L ++ ED GYY+C + + V D + ++ +
Sbjct: 39 PQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKD 98
Query: 149 -------------------MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSS 189
GS L C I W + D I
Sbjct: 99 DAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTD---KTIKWLK-DGSII--------- 145
Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
+ +L + G YQC A L V+
Sbjct: 146 -SPLNATKNTWNLGNNAKDPRGTYQCQGAK------ETSNPLQVY 183
Score = 36.4 bits (83), Expect = 0.004
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 17/83 (20%)
Query: 38 HRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA 97
++ + V GS++ + + W+K + ++ +A
Sbjct: 108 NKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSI-----------------ISPLNA 150
Query: 98 NTWTLNIRSVRREDRGYYMCQVN 120
T N+ + ++ RG Y CQ
Sbjct: 151 TKNTWNLGNNAKDPRGTYQCQGA 173
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 40.2 bits (94), Expect = 4e-04
Identities = 32/147 (21%), Positives = 46/147 (31%), Gaps = 29/147 (19%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT----KQMAFLEV---------V 134
R S + + +L I + ED Y C + + V V
Sbjct: 59 TRFSGS-KSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTV 117
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEII--VRSNPPSSQ 190
SSEE A LVC + P + W+ D + V + PS Q
Sbjct: 118 TLFPPSSEELQ-------ANKATLVCLISDFYPGAVTVAWKA-DGSPVKAGVETTKPSKQ 169
Query: 191 K--VFSVESEVLSLTKVTRSEMGAYQC 215
++ S LSLT +Y C
Sbjct: 170 SNNKYAASS-YLSLTPEQWKSHRSYSC 195
Score = 29.8 bits (67), Expect = 0.78
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 24/129 (18%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI----------SSEETSGDMMV 150
L++ + + Y CQV T + SS+ TSG
Sbjct: 179 YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSG---- 234
Query: 151 PEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPSSQ--KVFSVESEVLSLTKVT 206
G+A L C K Y P P ++W V + P Q ++S+ S V+++ +
Sbjct: 235 ---GTAALGCLVKDYFPQPVTVSWNS-GALTSGVHTFPAVLQSSGLYSLSS-VVTVPSSS 289
Query: 207 RSEMGAYQC 215
Y C
Sbjct: 290 LGT-QTYIC 297
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 39.1 bits (91), Expect = 4e-04
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 14/97 (14%)
Query: 134 VIPPDISSEETSGDMMVPEGGSAKLVCKAKGY----PTPKITWRREDNKEIIVRSNPPSS 189
+ PP ++ ++ + K+ C P + +W +D + ++ P
Sbjct: 6 IFPP--KPKD-----VLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREE 58
Query: 190 QK--VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224
Q F S L + ++C + P
Sbjct: 59 QFNSTFRSVS-ELPIMHQDWLNGKEFKCRVNSAAFPA 94
Score = 36.4 bits (84), Expect = 0.004
Identities = 23/183 (12%), Positives = 48/183 (26%), Gaps = 20/183 (10%)
Query: 57 FPTDSSAMKVAWIKADTKAVLAIHEHVIT-NNARLSVTHNDANTWTLNIRSVRREDRGYY 115
D ++ +W D + A + N+ L I + +
Sbjct: 30 ISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVS------ELPIMHQDWLNGKEF 83
Query: 116 MCQVNTNPM-----TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP- 168
C+VN+ P + + + M L C +P
Sbjct: 84 KCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQM--AKDKVSLTCMITDFFPEDI 141
Query: 169 KITWRREDNKEIIVRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAA-NGVPPTV 225
+ W ++ P + V S L++ K + C G+
Sbjct: 142 TVEWESNGQPAENYKNTQPIMDTDGSYFVYS-KLNVQKSNWEAGNTFTCSVLHEGLHNHH 200
Query: 226 SKR 228
+++
Sbjct: 201 TEK 203
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 39.2 bits (91), Expect = 5e-04
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 13/134 (9%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFL-----EVVIPPDISSE 142
A L++ D + TL + D Y C + T + + P+I +
Sbjct: 59 ASLAIA-EDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNP 117
Query: 143 ETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLS 201
+ + + S K VC ++ ++ + I ++ + S
Sbjct: 118 DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMR------SMDFKS 171
Query: 202 LTKVTRSEMGAYQC 215
+ V S + C
Sbjct: 172 NSAVAWSNKSDFAC 185
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 37.5 bits (86), Expect = 5e-04
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE-MG 211
G + L C YP +I W+ ++K I K + + LSL + + E G
Sbjct: 21 GTTVILTCPQ--YPGSEILWQH-NDKNI----GGDEDDKNIGSDEDHLSLKEFSELEQSG 73
Query: 212 AYQCIAANGVPPTVSKRLML 231
Y C P + L L
Sbjct: 74 YYVCYPRGSKPEDANFYLYL 93
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 39.1 bits (91), Expect = 6e-04
Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 36/159 (22%)
Query: 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-------LEV------VI 135
LS + + L+ + + D G+Y+C + + L V V
Sbjct: 63 NLSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVF 122
Query: 136 PPDI-----SSEETSGDMMVPEGGSAKLVCKAKGYPTP--KITWRREDNKEII--VRSNP 186
PP++ S E S A LVC A G+ +++W + KE+ V ++P
Sbjct: 123 PPEVAVFEPSEAEIS------HTQKATLVCLATGFFPDHVELSWWV-NGKEVHSGVCTDP 175
Query: 187 PSSQKVFSVE------SEVLSLTKVT-RSEMGAYQCIAA 218
++ ++ S L ++ ++ ++C
Sbjct: 176 QPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ 214
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 38.5 bits (89), Expect = 7e-04
Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 6/130 (4%)
Query: 87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETS 145
N R S T + DA TL+I + +D Y C V + ++++ P I + E +
Sbjct: 59 NGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYIQNPEPA 118
Query: 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
+ +C + + + ++ I + + S +
Sbjct: 119 VYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFI-----TDKCVLDMKAMDSKSNGAI 173
Query: 206 TRSEMGAYQC 215
S ++ C
Sbjct: 174 AWSNQTSFTC 183
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein,
T cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 230
Score = 38.4 bits (90), Expect = 8e-04
Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 36/149 (24%)
Query: 95 NDANTWTLNIRSVRREDRGYYMCQVNTN--------------------PMTKQMAFLEVV 134
A+T L I S+ ED Y C +
Sbjct: 74 PSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPT 133
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPSSQK- 191
I +E +C + + P ++ W+ +D I+ + +
Sbjct: 134 IFLPSVAETNLHKTGT-------YLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTN 186
Query: 192 -VFSVESEVLSLTKVTRSEMG-AYQCIAA 218
+ S LT V MG ++CI
Sbjct: 187 DTYMKFS---WLT-VPERAMGKEHRCIVK 211
Score = 26.1 bits (58), Expect = 9.0
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 142 EETSGDMMVPEGGSAKLVCKAKGY 165
E+ + P +A++ CK
Sbjct: 5 EQPEISISRPRDETAQISCKVFIE 28
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 38.4 bits (89), Expect = 9e-04
Identities = 33/225 (14%), Positives = 70/225 (31%), Gaps = 56/225 (24%)
Query: 22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE 81
TCVV + D ++++W + + A +
Sbjct: 25 ISLTPKVTCVVVD----------------------VSEDDPDVQISWFVNNVEVHTAQTQ 62
Query: 82 -HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN----TNPMTKQMAFLEV--- 133
H N+ + V TL I+ + C+VN +P+ + ++ ++
Sbjct: 63 THREDYNSTIRVVS------TLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVR 116
Query: 134 -----VIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNP 186
++PP +E+ S L C G P + W + E +
Sbjct: 117 APQVYILPP--PAEQLSRK-------DVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTA 167
Query: 187 PSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVSKR 228
P + + S L++ + ++ C + G+ K+
Sbjct: 168 PVLDSDGSYFIYS-KLNMKTSKWEKTDSFSCNVRHEGLKNYYLKK 211
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 38.4 bits (89), Expect = 0.001
Identities = 30/190 (15%), Positives = 59/190 (31%), Gaps = 34/190 (17%)
Query: 57 FPTDSSAMKVAWIKADTKAVLAI-HEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYY 115
+ +K W + A N+ V L + + Y
Sbjct: 51 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVS------VLTVLHQDWLNGKEY 104
Query: 116 MCQVN----TNPMTKQMAFLE--------VVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163
C+V+ P+ K ++ + +PP S +E + + L C K
Sbjct: 105 KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP--SRDELTKNQ-------VSLTCLVK 155
Query: 164 G-YPTP-KITWRREDNKEIIVRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAA- 218
G YP+ + W E ++ PP F + S L++ K + + C
Sbjct: 156 GFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYS-KLTVDKSRWQQGNVFSCSVMH 214
Query: 219 NGVPPTVSKR 228
+ +++
Sbjct: 215 EALHNHYTQK 224
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 38.5 bits (89), Expect = 0.001
Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 25/151 (16%)
Query: 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM----------AFLEVVIPPD 138
SV+ ++ L + S ++ +Y+C ++ +Q L+ V PP+
Sbjct: 65 GYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPE 124
Query: 139 ISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEI---------IVRSNPP 187
++ E S + + A LVC A G YP +++W + KE+ ++ P
Sbjct: 125 VAVFEPS-EAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVSTDPQPLKEQPA 182
Query: 188 SSQKVFSVESEVLSLTKVT-RSEMGAYQCIA 217
+ +S+ S L ++ ++ ++C
Sbjct: 183 LNDSRYSLSS-RLRVSATFWQNPRNHFRCQV 212
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 38.0 bits (88), Expect = 0.001
Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 15/135 (11%)
Query: 87 NARLSVTHNDANT-WTLNIRSVRREDRGYYMCQV--NTNPMTKQMAF---LEVVIPPDIS 140
RL+ DA +L+I + + D G Y+C + + F ++ + P+I
Sbjct: 58 LKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLI----FGKGTKLSVKPNIQ 113
Query: 141 SEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVL 200
+ + + + S K VC + + + +D+ V + + S++ +
Sbjct: 114 NPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSD---VYITDKTVLDMRSMDFKSN 170
Query: 201 SLTKVTRSEMGAYQC 215
S + + C
Sbjct: 171 SAVAWSNKS--DFAC 183
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 38.0 bits (88), Expect = 0.001
Identities = 33/232 (14%), Positives = 66/232 (28%), Gaps = 54/232 (23%)
Query: 14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
P + G TCVV + + ++ +W D
Sbjct: 23 PKTKDVLGGGLTPKVTCVVVD----------------------ISQNDPEVRFSWFIDDV 60
Query: 74 KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN-----------TN 122
+ +H + S + + L I + + C+VN +
Sbjct: 61 E----VHTAQTHAPEKQSNS-TLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSIS 115
Query: 123 PMTKQMAFLEVVI-PPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKE 179
+V P EE + + C KG YP W+ +
Sbjct: 116 KPEGTPRGPQVYTMAP--PKEEMTQS-------QVSITCMVKGFYPPDIYTEWKMNGQPQ 166
Query: 180 IIVRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAA-NGVPPTVSKR 228
++ PP+ + + S L++ K T + + C G+ +++
Sbjct: 167 ENYKNTPPTMDTDGSYFLYS-KLNVKKETWQQGNTFTCSVLHEGLENEHTEK 217
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 37.7 bits (87), Expect = 0.001
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 5/121 (4%)
Query: 89 RLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF---LEVVIPPDISSEET 144
+ +++ L SV D Y C V+ +++F ++ + P+I + +
Sbjct: 70 GFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPNIQNPDP 129
Query: 145 SGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT 203
+ + S K VC ++ ++ + I + F S V
Sbjct: 130 AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSN 189
Query: 204 K 204
K
Sbjct: 190 K 190
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 38.6 bits (88), Expect = 0.001
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
GG+A+L C K ++ W+ ++ S K + + L + ++
Sbjct: 542 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVL------KAESPKYGLMGRKNLLIFNLS 594
Query: 207 RSEMGAYQCIAA-NGVPPTVSKRLMLHV 233
+ G YQC++ TV + + HV
Sbjct: 595 EGDSGVYQCLSEERVKNKTVFQVVAKHV 622
Score = 30.1 bits (66), Expect = 0.77
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 18/102 (17%)
Query: 58 PTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
S+ +V W + ++ + L I ++ D G Y C
Sbjct: 556 SQKSNLARVFWKFQNGVLKAESPKYGLMGR------------KNLLIFNLSEGDSGVYQC 603
Query: 118 ----QVNTNPMTKQMA--FLEVVIPPDISSEETSGDMMVPEG 153
+V + + +A LEV + P T +
Sbjct: 604 LSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGS 645
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 37.5 bits (87), Expect = 0.002
Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 12/94 (12%)
Query: 134 VIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP---KITWRREDNKEIIVRSNPPSSQ 190
+ P + E+ G A L C G TW K +
Sbjct: 8 LHRP--ALEDLL------LGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLC 59
Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224
+SV S VL + + C AA T
Sbjct: 60 GCYSVSS-VLPGCAEPWNHGKTFTCTAAYPESKT 92
Score = 28.7 bits (64), Expect = 1.3
Identities = 23/125 (18%), Positives = 38/125 (30%), Gaps = 31/125 (24%)
Query: 101 TLNIRSVRREDRGYYMCQVN----------TNPMTKQMAFLEV-VIPPDISSEETSGDMM 149
L + + C T + EV ++PP SEE +
Sbjct: 67 VLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPP--PSEELA---- 120
Query: 150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEI--------IVRSNPPSSQKVFSVESEV 199
L C A+G P + W + ++E+ R P F+V S +
Sbjct: 121 --LNELVTLTCLARGFSPKDVLVRWLQ-GSQELPREKYLTWASRQEPSQGTTTFAVTS-I 176
Query: 200 LSLTK 204
L +
Sbjct: 177 LRVAA 181
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 37.6 bits (87), Expect = 0.002
Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 36/159 (22%)
Query: 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-------------MTKQMAFLEVVI 135
+ + H TL + S ED +Y+C L+ V
Sbjct: 89 KFLINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVF 148
Query: 136 PPDI-----SSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEII--VRSNP 186
PP++ S E S A LVC A G+ P +++W + KE+ V ++P
Sbjct: 149 PPEVAVFEPSEAEIS------HTQKATLVCLATGFYPDHVELSW-WVNGKEVHSGVSTDP 201
Query: 187 PSSQKVFSVE------SEVLSLTKVT-RSEMGAYQCIAA 218
++ ++ S L ++ ++ ++C
Sbjct: 202 QPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQ 240
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 37.2 bits (86), Expect = 0.002
Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF---LEVVIPPDISSE 142
+ R ++ N ++L+I + D Y C + N + F ++V+ P+I +
Sbjct: 58 DGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIF----FGDGTQLVVKPNIQNP 113
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEII 181
E + + +C + + + ++ I
Sbjct: 114 EPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFI 152
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 35.7 bits (82), Expect = 0.003
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 18/93 (19%)
Query: 42 SSVTDTHVNTGGSIVFP------TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN 95
V G + P T + + + W K +E + T+ ++ +
Sbjct: 2 DGYK---VEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKS 58
Query: 96 D---------ANTWTLNIRSVRREDRGYYMCQV 119
+L I++V +D G Y C++
Sbjct: 59 SRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRI 91
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 35.3 bits (81), Expect = 0.003
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 14/83 (16%)
Query: 52 GGSIVFPTDSSAMK----VAWIKADTKAVLAIHEHVITNNARLSVTHN--------DANT 99
G S+ FP + + +AW + V + ++VTH
Sbjct: 14 GESVTFPVNIQEPRQVKIIAWTSKTS--VAYVTPGDSETAPVVTVTHRNYYERIHALGPN 71
Query: 100 WTLNIRSVRREDRGYYMCQVNTN 122
+ L I +R ED G Y +NT
Sbjct: 72 YNLVISDLRMEDAGDYKADINTQ 94
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer,
SCFV, variable domain, immune system; 2.60A {Mus
musculus} SCOP: b.1.1.1 b.1.1.1
Length = 240
Score = 36.6 bits (85), Expect = 0.003
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMC-QVNTNPMT--KQMAFLEVVIPPDISSE- 142
R S T +TL I V +D Y C Q N +P T E
Sbjct: 63 PVRFSGT-GSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEV 121
Query: 143 --ETSGDMMVPEGGSAKLVCKAKGY 165
+ SG +V G S KL C A G+
Sbjct: 122 QLQQSGAELVEPGASVKLSCTASGF 146
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 35.3 bits (81), Expect = 0.004
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 57 FPTDSSAMKVAWIKADTKAVLAIHEHVITN--------NARLSVTHN-DANTWTLNIRSV 107
+ T W + + + + TN ++R ++ + +L I +
Sbjct: 21 YSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENS 80
Query: 108 RREDRGYYMCQVNT-NPMTKQMAFLEVVIPPDIS 140
D G Y C+V Q + + P++
Sbjct: 81 VESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen
complex, HIV inhibiting antibody; 1.89A {Mus musculus}
PDB: 1jp5_A
Length = 247
Score = 36.5 bits (85), Expect = 0.004
Identities = 22/86 (25%), Positives = 29/86 (33%), Gaps = 21/86 (24%)
Query: 97 ANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEV----VIPPDISSEE--- 143
+TL I V ED G Y C ++ TK LE+ S
Sbjct: 73 GTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTK----LEIKGGGGSGGGGSGGGGSE 128
Query: 144 ----TSGDMMVPEGGSAKLVCKAKGY 165
SG + G + K+ CKA Y
Sbjct: 129 VQLQQSGPELKKPGETVKISCKATNY 154
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 36.5 bits (84), Expect = 0.004
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 14/96 (14%)
Query: 134 VIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP---KITWRREDNKEIIVRSNPPSSQ 190
IPP S E AKL C P+ +TW RE + +
Sbjct: 17 AIPP--SPGELY------ISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEH 68
Query: 191 K--VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224
+S S + ++ + C + P
Sbjct: 69 FNGTYSASS-AVPVSTQDWLSGERFTCTVQHEELPL 103
Score = 27.7 bits (61), Expect = 2.9
Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 41/196 (20%)
Query: 60 DSSAMKVAWIKADTKAVLAIHEHVITN-NARLSVTHNDANTWTLNIRSVRREDRGYYMCQ 118
S++ V W + + + + + N S + + + + + C
Sbjct: 42 SDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASS------AVPVSTQDWLSGERFTCT 95
Query: 119 VN----------TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPT 167
V + ++ P EE S L C +G P
Sbjct: 96 VQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSR-------VTLSCLVRGFRPR 148
Query: 168 P-KITWRREDN-------------KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAY 213
+I W R+ E + F V S +S+ + +
Sbjct: 149 DIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYS-KMSVETAKWNGGTVF 207
Query: 214 QCIAA-NGVPPTVSKR 228
C+A +P S+R
Sbjct: 208 ACMAVHEALPMRFSQR 223
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.004
Identities = 31/176 (17%), Positives = 52/176 (29%), Gaps = 67/176 (38%)
Query: 61 SSAMKVAWIKADTKAV----LAIHEHVITNNARLSVTHNDANTWTLNIRSVR-REDRGYY 115
S A + W +AD +I + ++ NN H + R RE+ Y
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILD-IVINNPVNLTIHFGG------EKGKRIREN---Y 1688
Query: 116 MCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE 175
M F ET D +
Sbjct: 1689 S----------AMIF------------ETIVD-------------------------GKL 1701
Query: 176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR-----SEMGAYQCIAANGVPPTVS 226
++I N S+ F E +LS T+ T+ E A++ + + G+ P +
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Score = 35.8 bits (82), Expect = 0.011
Identities = 26/138 (18%), Positives = 39/138 (28%), Gaps = 42/138 (30%)
Query: 127 QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWR-REDNKEI----- 180
A+ +PP I + + VP S L ++ + N +
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVP---SPMLSI--SNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 181 --IVRSN---------PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-----PT 224
I N PP S L+L K ++ G Q + +P
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGL-----NLTLRKA-KAPSGLDQ----SRIPFSERKLK 415
Query: 225 VSKRLMLHV----HCTYL 238
S R L V H L
Sbjct: 416 FSNRF-LPVASPFHSHLL 432
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 35.8 bits (82), Expect = 0.005
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETS 145
N + L + +E+ GYY C V +N + + + V+ + ++ +
Sbjct: 88 NKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPV 135
Score = 26.5 bits (58), Expect = 6.8
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 21/106 (19%)
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRRE-----------------DNKEIIVRSNPPSSQ 190
M G LVC+ G + +W + + +I SS+
Sbjct: 19 MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSK 78
Query: 191 KVFSVESE----VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232
++ VL+L K ++ G Y C + S + +
Sbjct: 79 LFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVL 124
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 35.2 bits (81), Expect = 0.005
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 89 RLSVT-HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV 133
R+ + ++D + + +++ ED G Y C + P M F +
Sbjct: 64 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRI 109
Score = 31.7 bits (72), Expect = 0.060
Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 19/113 (16%)
Query: 140 SSEETSGDMMVPEGGSAKLVCKAKG--YPTPKITWRREDNK---EIIVRSNPPSSQKVFS 194
+++ T + EG + + C + + + W+ + + + + PS
Sbjct: 1 ATKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPV 60
Query: 195 VESEV------------LSLTKVTRSEMGAYQC--IAANGVPPTVSKRLMLHV 233
+ + + + + G YQC P + R+ L V
Sbjct: 61 QVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 113
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 34.8 bits (80), Expect = 0.005
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV-VIPP 137
R + + + + +++ ED G Y C V+ + + + + ++PP
Sbjct: 54 AGRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNILPP 106
Score = 30.2 bits (68), Expect = 0.21
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 21/100 (21%)
Query: 150 VPEGGSAKLVCK-AKGYPTPKITWRREDNK--EIIVRSNPPS-------------SQKVF 193
P G S + C + W R + + +V S +
Sbjct: 9 APVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLL 68
Query: 194 SVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
VE + + + G Y C+ P + R+ L++
Sbjct: 69 QVE-----MVTLQEEDAGEYGCMVDGARGPQILHRVSLNI 103
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 35.3 bits (81), Expect = 0.005
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 17/116 (14%)
Query: 39 RVSSSVTDTHVNTGGSIVFP------TDSSAMKVAWIKADTKAVLAIH--------EHVI 84
RV G P +++ M+V W ++ V+ ++ E
Sbjct: 8 RVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAP 67
Query: 85 TNNARLSVTHNDANT--WTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-LEVVIPP 137
R + L I++VR D G Y C + ++ A L+V P
Sbjct: 68 EYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 123
Score = 31.1 bits (70), Expect = 0.15
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 20/107 (18%)
Query: 150 VPEGGSAKLVCK---AKGYPTPKITWRRE----------DNKEIIVRSNPPSSQKVFSVE 196
G A+L C+ K ++ W R + K+ P + ++
Sbjct: 18 ALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLK 77
Query: 197 SEV------LSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237
+ L + V S+ G Y C + + L V +
Sbjct: 78 ESIGEGKVALRIQNVRFSDEGGYTCFFRDH-SYQEEAAVELKVEDPF 123
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 35.2 bits (81), Expect = 0.005
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 39 RVSSSVTDTHVNTGGSIVFP-------TDSSAMKVAWIKADTKAVLAIHEHVITNNA--- 88
+++ G + P D + + W+ + ++ +
Sbjct: 7 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIY 66
Query: 89 ---------RLSVTHNDANTW--TLNIRSVRREDRGYYMCQVNTNP 123
R+ T ND + ++N+ +++ D G Y C+V P
Sbjct: 67 DDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAP 112
Score = 27.1 bits (60), Expect = 3.2
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 33/127 (25%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCK----AKGYPTPKITWRRE----------- 175
L + P ++ + +G +A L CK + I W
Sbjct: 6 LSITTPEEM--------IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVI 57
Query: 176 ---DNKEIIVRSNPPSSQKVFSVESEV------LSLTKVTRSEMGAYQCIAANGVPPTVS 226
+I P +V +++ +++T + S++G YQC P +
Sbjct: 58 ILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKA-PGVAN 116
Query: 227 KRLMLHV 233
K++ L V
Sbjct: 117 KKIHLVV 123
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 36.3 bits (84), Expect = 0.005
Identities = 10/104 (9%), Positives = 23/104 (22%), Gaps = 20/104 (19%)
Query: 89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-------------------PMTKQMA 129
+ + + +R++ D G Y C
Sbjct: 68 KYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAK 127
Query: 130 FLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITW 172
+ + +P + L C + + + I W
Sbjct: 128 KDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFW 171
Score = 29.4 bits (66), Expect = 0.82
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 89 RLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV 119
R SV A + L I +++ ED Y C +
Sbjct: 197 RYSVNFKKAAKSVALTISALQLEDSAKYFCAL 228
Score = 29.4 bits (66), Expect = 0.82
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
E + ++ G SA++ C T I W
Sbjct: 6 EGRTKSVIRQTGSSAEITCDLAEGSTGYIHW 36
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 35.2 bits (81), Expect = 0.005
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 89 RLSVT-HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV 133
R+ + ++D + + +++ ED G Y C + P M F +
Sbjct: 69 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRI 114
Score = 27.9 bits (62), Expect = 1.6
Identities = 13/102 (12%), Positives = 33/102 (32%), Gaps = 21/102 (20%)
Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG--YPTPKITW-RREDNK--EIIVRSN 185
+E+ ++ E+ + EG + + C + + + W D + + + +
Sbjct: 1 MELRAATKLTEEKYE----LKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTE 56
Query: 186 PPSSQKVFSVESEV------------LSLTKVTRSEMGAYQC 215
PS + + + + + G YQC
Sbjct: 57 RPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC 98
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 35.8 bits (82), Expect = 0.006
Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 87 NARLSVTHNDANT-WTLNIRSVRREDRGYYMCQVNTNP-MTKQMAF---LEVVIPPDISS 141
N R + T + +L+I + + D Y+C V+ ++ F ++ + PDI +
Sbjct: 61 NGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQN 120
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEII 181
+ + + S K VC + + + +D+ I
Sbjct: 121 PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYI 160
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 36.2 bits (83), Expect = 0.007
Identities = 36/242 (14%), Positives = 64/242 (26%), Gaps = 60/242 (24%)
Query: 10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWI 69
+L + + TC+V + +++ W
Sbjct: 115 AYLSRPSPFDLFIRKSPTITCLVVD----------------------LAPSKGTVQLTWS 152
Query: 70 KADTKAVLAI-HEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQ 127
+A K V + N L+VT TL + + + Y C+V + +
Sbjct: 153 RASGKPVNHSTRKEEKQRNGTLTVTS------TLPVGTRDWIEGETYQCRVTHPHLPRAL 206
Query: 128 MAFLE-----------VVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRR 174
M S D L C + P + W
Sbjct: 207 MRSTTKTSGPRAAPEVYAFAT--PEWPGSRDK-------RTLACLIQNFMPEDISVQWLH 257
Query: 175 EDN--KEIIVRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIA---ANGVPPTVSK 227
+ + + P K F V S L +T+ + + C A A TV +
Sbjct: 258 NEVQLPDARHSTTQPRKTKGSGFFVFS-RLEVTRAEWEQKDEFICRAVHEAASPSQTVQR 316
Query: 228 RL 229
+
Sbjct: 317 AV 318
Score = 34.6 bits (79), Expect = 0.018
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPSSQ--K 191
PP + ++S D + +L+C GY P +ITW + + S ++Q +
Sbjct: 7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGE 66
Query: 192 VFSVESEVLSLTKVTRSEMGAYQC 215
+ S +SE L+L++ Y C
Sbjct: 67 LASTQSE-LTLSQKHWLSDRTYTC 89
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 34.9 bits (80), Expect = 0.007
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNP 123
N + L + +E+ GYY C V +N
Sbjct: 83 NKYVLTLNKFSKENEGYYFCSVISNS 108
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 35.7 bits (82), Expect = 0.007
Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 87 NARLSVTHNDANT-WTLNIRSVRREDRGYYMCQVNTNP-MTKQMAF---LEVVIPPDISS 141
+ RL+ + + ++ TL I + + D Y+C V + F +++ P I +
Sbjct: 58 SGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQN 117
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEII 181
+ + + S K VC + + + +D+ I
Sbjct: 118 PDPAVYQLRRSKSSDKSVCLFTDFDSQTNVSQSKDSDVYI 157
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 34.6 bits (79), Expect = 0.007
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 14/95 (14%)
Query: 42 SSVTDTHVNTGGSIVFP-----TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND 96
S T G + P + + W + + I + TN ++ N
Sbjct: 2 ESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNS 61
Query: 97 ---------ANTWTLNIRSVRREDRGYYMCQVNTN 122
+L I + D G Y C V
Sbjct: 62 RYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIP 96
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 34.5 bits (79), Expect = 0.008
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 89 RLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETS 145
R+S+ N T+T+ + + + D Y C + + + P ++ EETS
Sbjct: 63 RVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEETS 120
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 35.4 bits (81), Expect = 0.009
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 9/135 (6%)
Query: 85 TNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF---LEVVIPPDIS 140
N RL T N TL+I+ + ED G Y C ++ F + + P+I
Sbjct: 54 KENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQ 113
Query: 141 SEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVL 200
+ E + + +C + + + ++ I + +
Sbjct: 114 NPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFI-----TDKCVLDMKAMDSK 168
Query: 201 SLTKVTRSEMGAYQC 215
S + S ++ C
Sbjct: 169 SNGAIAWSNQTSFTC 183
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 35.4 bits (81), Expect = 0.009
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAF---LEVVIPPDISS 141
+ T + ++++ L S + D Y C + ++ F + + P+I +
Sbjct: 59 HQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQN 118
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEII 181
E + + +C + + + ++ I
Sbjct: 119 PEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFI 158
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 34.3 bits (79), Expect = 0.010
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122
+ R+ + N+ + TL I+ +R ED G Y CQ N
Sbjct: 64 LKLEKGRMEESQNE-SLATLTIQGIRFEDNGIYFCQQKCN 102
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 35.0 bits (80), Expect = 0.012
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 87 NARLSVTHNDANT-WTLNIRSVRREDRGYYMCQVNTNPMTK-----QMAFLEVVIPPDIS 140
+ T++ T + L SV+ D Y C N+ + ++ + + PD +
Sbjct: 58 SRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPA 117
Query: 141 SEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEII 181
+ + S K VC + + + +D+ I
Sbjct: 118 VYQ-----LRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYI 153
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 35.4 bits (80), Expect = 0.013
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
+ + L C + +WR ++N E S + + +L + +T
Sbjct: 510 VSLAPNSRYYLSCPMES-RHATYSWRHKENVE-------QSCEPGHQSPNCILFIENLTA 561
Query: 208 SEMGAYQCIAA-NGVPPTVSK 227
+ G Y C A
Sbjct: 562 QQYGHYFCEAQEGSYFREAQH 582
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 35.1 bits (81), Expect = 0.013
Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 14/130 (10%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPM--------TKQMAFLEVVIPPDISSEETSGDMM 149
+ +L I +R ED Y C + + TK + P ++ S + +
Sbjct: 89 TSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEEL 148
Query: 150 VPEGGSAKLVCKAKG-YPTP-KITWRREDN--KEIIVRSNPPSSQKVFSVESEVLSLTKV 205
+ A LVC +P + W+ + K + + P S LSLT
Sbjct: 149 --QANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPE 206
Query: 206 TRSEMGAYQC 215
+Y C
Sbjct: 207 QWKSHRSYSC 216
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 33.7 bits (77), Expect = 0.014
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 19/103 (18%)
Query: 42 SSVTDTHVNTGGSIVFP---------TDSSAMKVAWIKADTK---AVLAIHEHVITN--- 86
+V +G ++ P S+ + W + V+ + + +
Sbjct: 8 KNVQ---GLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRF 64
Query: 87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
R + N D L ++ ++ ED G Y + + + +
Sbjct: 65 RGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWL 107
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 33.4 bits (76), Expect = 0.016
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 10/90 (11%)
Query: 58 PTDSSAMKVAWIKADTKAVLAIHEHVITN--------NARLSVTHNDAN-TWTLNIRSVR 108
S + W K E + T+ + + ++ +L I +
Sbjct: 22 SWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTN 81
Query: 109 REDRGYYMCQVNTN-PMTKQMAFLEVVIPP 137
R D G Y C++ + + +
Sbjct: 82 RGDSGVYCCRIEVPGWFNDVKKNVRLELRR 111
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 33.4 bits (76), Expect = 0.018
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
+ D ++ I ++ D G + C V P
Sbjct: 75 DPSWKDG---SIVIHNLDYSDNGTFTCDVKNPP 104
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 33.1 bits (76), Expect = 0.019
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 89 RLSVTHNDANT-WTLNIRSVRREDRGYYMCQV-NTNPMTK--QMAFLEVVIPPDI 139
R + + +NI RR D G Y+C + +P K + E+V+ I
Sbjct: 61 RFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKLKIEESPGAELVVTERI 115
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 34.9 bits (80), Expect = 0.019
Identities = 19/120 (15%), Positives = 28/120 (23%), Gaps = 22/120 (18%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP-------------PDISSEETSGDM 148
L + + + C V Q + +P P S +
Sbjct: 192 LTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSL 251
Query: 149 MVPE------GGSAKLVCKAKGYPTP---KITWRREDNKEIIVRSNPPSSQKVFSVESEV 199
P G A L C G TW K + +SV S +
Sbjct: 252 HRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVL 311
Score = 30.3 bits (68), Expect = 0.62
Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 31/162 (19%)
Query: 89 RLSVTHNDA-NTWTLNIRSVRREDRGYYMC----------------QVNTNPMTKQMAFL 131
R++ T + + T + + S+R ED Y C Q ++
Sbjct: 68 RVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTS 127
Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTPKITWR-REDNKEIIVRSNPPSS 189
V P + S + G+ + C +G+ P ++ E + + R+ PPS
Sbjct: 128 PKVFPLSLCSTQPD--------GNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQ 179
Query: 190 QK---VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKR 228
+++ S L+L + C + P+
Sbjct: 180 DASGDLYTTSS-QLTLPATQCLAGKSVTCHVKHYTNPSQDVT 220
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 33.5 bits (77), Expect = 0.019
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-----LEV 133
+ +++ R+ T N + +TL I++++ ED G Y C+ + + L V
Sbjct: 59 QELVSEEGRIVQTQNG-SVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLV 115
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 34.5 bits (79), Expect = 0.021
Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 36/153 (23%)
Query: 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-------LEV------VIPPDI-- 139
L ++ C + + T L V V PP++
Sbjct: 69 TRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAV 128
Query: 140 ---SSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEII--VRSNPPSSQKV 192
S E S A LVC A G+ P +++W + KE+ V ++P ++
Sbjct: 129 FEPSEAEISH------TQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVSTDPQPLKEQ 181
Query: 193 FSVE------SEVLSLTKVT-RSEMGAYQCIAA 218
++ S L ++ ++ ++C
Sbjct: 182 PALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ 214
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 33.0 bits (75), Expect = 0.023
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
Query: 37 GHRVSSSVTDT-----HVNTGGSI----VFPTDSSA------MKVAWIKADTKAVLAIHE 81
H S + G ++ +P S K A + V +
Sbjct: 5 HHHHHHSQAQSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKP 64
Query: 82 HVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP 123
+ +R ++ + DA +T+ + +R ED G+Y C++
Sbjct: 65 RTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPS 107
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 33.9 bits (77), Expect = 0.024
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF---LEVVIPPDISS 141
N RL + TL+IR + ED G Y C + T ++ F + + P+I +
Sbjct: 57 ENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEAS-NTNKVVFGTGTRLQVLPNIQN 115
Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIV 182
+ + + S K VC + + + +D+ I
Sbjct: 116 PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 156
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 33.8 bits (77), Expect = 0.032
Identities = 26/145 (17%), Positives = 41/145 (28%), Gaps = 24/145 (16%)
Query: 86 NNARLSVTHNDA--NTWTLNIRSVRREDRGYYMCQV-----------NTNPMTKQMAFLE 132
N RL + TL+IR + ED G Y C T+ +
Sbjct: 55 ENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQV 114
Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQ 190
V P + S +M + C K YP I+ R + S
Sbjct: 115 TVEPKSQPPAKPSVFIM---KNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPS 171
Query: 191 KVFSVESEVLSLTKVTRSEMGAYQC 215
+S ++ + + C
Sbjct: 172 GKYS------AVKLGQYGDSNSVTC 190
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized
SCFV), SCFV, monovalent antibo antibody engineering,
immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Length = 276
Score = 33.4 bits (77), Expect = 0.041
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 22/89 (24%)
Query: 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEV--------VIPPDIS 140
+TL I S++ ED Y CQ + TK +E+
Sbjct: 77 GSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTK----VEIKGGGGGSIEGRSGGG 132
Query: 141 SEET----SGDMMVPEGGSAKLVCKAKGY 165
E SG +V GGS +L C A G+
Sbjct: 133 GSEVQLVESGGGLVQPGGSLRLSCAASGF 161
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 33.2 bits (76), Expect = 0.050
Identities = 13/105 (12%), Positives = 25/105 (23%), Gaps = 16/105 (15%)
Query: 88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPP---------- 137
+ ++L + Y C T + F
Sbjct: 61 DGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAK 120
Query: 138 ------DISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
D ++ + V EG +A L C + W ++
Sbjct: 121 KDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQF 165
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 33.1 bits (76), Expect = 0.054
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 31/97 (31%)
Query: 96 DANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEV-----------VIPPD 138
+TL I V ED G Y C +T+ TK LE+ D
Sbjct: 86 SGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTK----LEIKSSADDAKKDAAKKDD 141
Query: 139 IS--SEETSGDMMVPE--------GGSAKLVCKAKGY 165
+ G + + E GG+ KL C G+
Sbjct: 142 AKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGF 178
Score = 26.2 bits (58), Expect = 9.6
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 89 RLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPM 124
R +++ +D+ ++ L + ++R ED G Y C + M
Sbjct: 220 RFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASYGM 256
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 31.5 bits (72), Expect = 0.072
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 81 EHVITNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTN 122
E I++ R T N +++L I + +D G Y C+ +
Sbjct: 46 EESISDGGRYVETVNRGSKSFSLRINDLTVKDSGTYRCKPESR 88
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 31.8 bits (72), Expect = 0.077
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 13/77 (16%)
Query: 59 TDSSAMKVAWIKADTKAVLAIHEHVITNN----------ARLSVTHN-DANTWTLNIRSV 107
TDS + W +A + V TNN R + + TL+IR
Sbjct: 38 TDSDPVHGYWFRAGNDI--SWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDA 95
Query: 108 RREDRGYYMCQVNTNPM 124
R D G Y ++ +
Sbjct: 96 RMSDAGRYFFRMEKGNI 112
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 31.2 bits (71), Expect = 0.079
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 89 RLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD 138
R+S+ N +T+ + +R D G Y C + + M + V I P
Sbjct: 62 RVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDP-MFKVTVNIGPV 111
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble
protein, KD, protein engineering, immunotherapy,
immune-suppressor, immune system; 2.10A {Homo sapiens}
PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Length = 114
Score = 31.5 bits (72), Expect = 0.081
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP 136
+T+ L + RRE+ GYY C +N + F+ V +P
Sbjct: 75 DTFVLTLSDFRRENEGYYFCSALSNSIMYFSHFVPVFLP 113
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 31.7 bits (72), Expect = 0.086
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 81 EHVITNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI 139
E I+ R T N +++L I +R ED G Y CQ + + + I +
Sbjct: 46 EQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYVFFAEDVGSNKGAIIGLM 105
Query: 140 SSEETSGD 147
G
Sbjct: 106 VGGVVIGG 113
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 31.2 bits (71), Expect = 0.086
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 81 EHVITNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNT 121
E I+ R T N +++L I + ED G Y C +
Sbjct: 46 EESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV 87
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 32.1 bits (72), Expect = 0.11
Identities = 10/88 (11%), Positives = 22/88 (25%), Gaps = 12/88 (13%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+++P GGS + C + K+ ++
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNN-----------RKVYELSN 56
Query: 207 RSEMGAYQCIAANGVPPTVSKRLMLHVH 234
E C + + + L V+
Sbjct: 57 VQEDSQPMCYSNCP-DGQSTAKTFLTVY 83
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 31.0 bits (70), Expect = 0.12
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 89 RLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTN 122
R ++T+ + T+ +NI + ++D G Y C + N
Sbjct: 63 RANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGIN 97
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 30.7 bits (70), Expect = 0.14
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 89 RLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF 130
R SV H + L I VR ED Y C P T ++ F
Sbjct: 64 RFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPPPTDKLIF 106
Score = 28.0 bits (63), Expect = 1.3
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 144 TSGDMMVPEGGSAKLVCKAKG-YPTPKITW 172
+S D V G L+C Y P + W
Sbjct: 6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFW 35
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1,
costimulatory, immune system; 2.10A {Homo sapiens}
Length = 129
Score = 30.7 bits (70), Expect = 0.15
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 88 ARLSVTHNDANT-WTLNIRSVRREDRGYYMCQVNTNP 123
R VT + +++ RR D G Y+C +
Sbjct: 62 CRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLA 98
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 30.5 bits (69), Expect = 0.21
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 88 ARLSVTHNDANT-WTLNIRSVRREDRGYYMCQ-VNTNPMTK 126
AR + + +NI RR D G Y+C ++ +P K
Sbjct: 70 ARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAK 110
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 30.6 bits (68), Expect = 0.21
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 25/105 (23%)
Query: 40 VSSSVTDTHVNTGGSIVFP------TDSSAMKVAWIKAD--TKAVLAIHEHVITNNARLS 91
V ++ T+ V+ GG++ P D+ ++W+K ++ + L
Sbjct: 7 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 66
Query: 92 -----------------VTHNDANTWTLNIRSVRREDRGYYMCQV 119
+ + TL + V +D G Y CQV
Sbjct: 67 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQV 111
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 30.0 bits (68), Expect = 0.22
Identities = 12/80 (15%), Positives = 17/80 (21%), Gaps = 8/80 (10%)
Query: 149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
V G + L C + + FS
Sbjct: 15 GVSLGDTVTLRCHLP-RMAAWVQLWLNGTLRFDKEKDKEQDAAEFS-------FAVTNLE 66
Query: 209 EMGAYQCIAANGVPPTVSKR 228
+ G YQC P S +
Sbjct: 67 DAGTYQCRYQVSEPLWTSNQ 86
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 29.9 bits (68), Expect = 0.25
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 89 RLSVTHNDANT-WTLNIRSVRREDRGYYMCQVNTN 122
R ++ N +L+I + D Y C + N
Sbjct: 59 RFTIFFNKREKKLSLHIADSQPGDSATYFCAASAN 93
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 31.0 bits (69), Expect = 0.27
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 144 TSGDMMVPEGGSAKLVCKAKGYPTPKIT--WRREDNKEIIVRSNPPSSQKVFSVESEVLS 201
++ V G A C A G + D ++ ++ +S + F +
Sbjct: 170 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS---FN 226
Query: 202 LTKVTRSEMGAYQCIAANGVPPTVS 226
+ T+ + G Y+C+ +S
Sbjct: 227 VVNTTKRDAGKYRCMIRTEGGVGIS 251
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV,
immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Length = 264
Score = 30.8 bits (70), Expect = 0.27
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 27/91 (29%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEV---------VIPPDISSE 142
+TL I SV+ ED Y CQ +N T+ LE+ S
Sbjct: 79 TDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTR----LEIKRGGGGSGGGGSGGGGSG 134
Query: 143 ET--------SGDMMVPEGGSAKLVCKAKGY 165
SG +V G S K+ CKA GY
Sbjct: 135 GGGSEVQLQQSGPEVVKTGASVKISCKASGY 165
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 30.9 bits (70), Expect = 0.34
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPMT 125
+TL I S++ ED Y C N T
Sbjct: 207 TDYTLTISSLQPEDVATYFCYQYNNGYT 234
Score = 27.0 bits (60), Expect = 5.3
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 89 RLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGD 147
RLS++ N L + S++ +D G Y C + + P +SG
Sbjct: 66 RLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGG 125
Query: 148 MMVPEGGSAKLVC 160
GGS
Sbjct: 126 GGSGGGGSGGGGS 138
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 29.4 bits (66), Expect = 0.39
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 89 RLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIPP 137
R+S+ + ++T+ + ++ ED G Y C V+T + + +EV + P
Sbjct: 56 RVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP 108
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 29.5 bits (66), Expect = 0.39
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPP 137
+L I+++ + D G+Y V + + + A + + P
Sbjct: 73 SLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYP 109
>3ux9_B SCFV antibody; five helices, long loop connecting helix,
hydrophobic intera cytokine-immune system complex; 2.80A
{Homo sapiens}
Length = 256
Score = 30.3 bits (69), Expect = 0.46
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 22/90 (24%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTK----QMAFLEV---------VIPPDISSEET 144
+ +L I ++ ED Y CQV N + L V + +
Sbjct: 72 TSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSS 131
Query: 145 ---------SGDMMVPEGGSAKLVCKAKGY 165
SG +V GGS +L C A G+
Sbjct: 132 SGSEVQLVESGGGLVQPGGSLRLSCAASGF 161
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 30.4 bits (68), Expect = 0.50
Identities = 13/94 (13%), Positives = 17/94 (18%), Gaps = 23/94 (24%)
Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAK-------GYPTPKITWRREDNKEIIVRSN 185
+ P V + VC K I W+ N I
Sbjct: 7 YISPESPV---------VQLHSNFTAVCVLKEKCMDYFHVNANYIVWKT--NHFTI---- 51
Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
P Q + S C
Sbjct: 52 -PKEQYTIINRTASSVTFTDIASLNIQLTCNILT 84
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 29.3 bits (65), Expect = 0.52
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 65 KVAWIKADTKAVLAIHEHVITNNARLSVT-------HNDANTWTLNIRSVRREDRGYYMC 117
+V ++ V + L+ + N L I+ +R D G Y+C
Sbjct: 35 RVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYIC 94
Query: 118 QV 119
+V
Sbjct: 95 KV 96
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 30.3 bits (68), Expect = 0.53
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 7/86 (8%)
Query: 145 SGDMMVPEGGSAKLVCKAKGYP--TPKITW-RREDNKEI---IVRSNPPSSQKVFSVESE 198
+ + K+ C P++ + DN E+ + F V S
Sbjct: 237 KPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVS- 295
Query: 199 VLSLTKVTRSEMGAYQCIAANGVPPT 224
L + ++C + P
Sbjct: 296 ALPIMHQDWLNGKEFKCRVNSAAFPA 321
Score = 29.1 bits (65), Expect = 1.3
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 22/149 (14%)
Query: 89 RLSVTHNDA-NTWTLNIRSVRRED-------RGYYM---CQVNTNPMTKQMAFLEVVIPP 137
+ ++T + + NT +++ S+ +D R + Q T ++ V P
Sbjct: 66 KATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPL 125
Query: 138 DISSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPSSQKVFSV 195
S + M+ L C KGY P P +TW + V + P Q
Sbjct: 126 APGSAAQTNSMVT-------LGCLVKGYFPEPVTVTWNS-GSLSSGVHTFPAVLQSDLYT 177
Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPT 224
S +++ R C A+ T
Sbjct: 178 LSSSVTVPSSPRPS-ETVTCNVAHPASST 205
Score = 27.2 bits (60), Expect = 5.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG + G S K+ CKA GY
Sbjct: 6 SGAELARPGASVKMSCKASGY 26
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like
beta-sandwich, immune system; 1.56A {Ictalurus
punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Length = 111
Score = 28.7 bits (65), Expect = 0.60
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 101 TLNIRSVRREDRGYYMCQ-VNTNPMT 125
LNI R +D G Y C V N +
Sbjct: 77 DLNIIGTREDDGGEYFCGEVEGNTIK 102
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 28.8 bits (64), Expect = 0.67
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 101 TLNIRSVRREDRGYYMCQVNT 121
L+IR VR D Y+C+V
Sbjct: 82 ELHIRDVRGHDASIYVCRVEV 102
>3c17_A L-asparaginase precursor; isoaspartyl peptidase, NTN-hydrolase,
autoprot precursor, hydrolase; 1.95A {Escherichia coli}
PDB: 2zak_A
Length = 320
Score = 29.6 bits (67), Expect = 0.71
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 49 VNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE 81
++ G++ P ++ M AW A I+
Sbjct: 279 IDHEGNVALPFNTEGMYRAWGYAGDTPTTGIYR 311
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 29.6 bits (67), Expect = 0.73
Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 16/114 (14%)
Query: 89 RLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV--------VIPPDI 139
+ A N L I + D G Y C +T M + + V P
Sbjct: 63 NFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQ 122
Query: 140 SSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPSSQK 191
+ + + C K + P +I +K+I
Sbjct: 123 P---HTKPSVFVMKNGTNVACLVKEFYPKDIRINLV--SSKKITEFDPAIVISP 171
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like
beta-sandwich, stalk region, immune system; 2.80A
{Ictalurus punctatus}
Length = 137
Score = 28.8 bits (65), Expect = 0.78
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 101 TLNIRSVRREDRGYYMCQ-VNTNPMT 125
LNI R +D G Y C V +
Sbjct: 77 DLNIIGAREDDGGEYFCGEVEGIIIK 102
>1k2x_B Putative L-asparaginase; NTN hydrolase, asparginase,
autoproteolysis, hydrolase; HET: CME; 1.65A {Escherichia
coli} SCOP: d.153.1.5 PDB: 1jn9_B* 1t3m_B 2zal_B
Length = 143
Score = 28.9 bits (65), Expect = 0.81
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 49 VNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE 81
++ G++ P ++ M AW A I+
Sbjct: 102 IDHEGNVALPFNTEGMYRAWGYAGDTPTTGIYR 134
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked
with A synthetic...; single-chain FV, monoclonal
antibody, immunoglobulin; 1.30A {Mus musculus} PDB:
3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Length = 250
Score = 29.2 bits (66), Expect = 0.96
Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 27/91 (29%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEV---------VIPPDISSE 142
++L I ++ +ED G Y CQ TK LE+ S
Sbjct: 72 TDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTK----LEIRRGGGGSGGGGSGGGGSG 127
Query: 143 ET--------SGDMMVPEGGSAKLVCKAKGY 165
SG +V G S K+ CK GY
Sbjct: 128 GGGSEVQLQQSGPELVKPGASVKISCKDSGY 158
Score = 26.5 bits (59), Expect = 8.9
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 138 DISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
DI +++ + G + C+A + W
Sbjct: 4 DIVLIQSTSSLSASLGDRVTISCRASQDIRNYLNW 38
>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 150
Score = 28.8 bits (65), Expect = 0.97
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
+D+ L+I +V+ ED +Y C +P
Sbjct: 77 SDSRRPFLSIMNVKPEDSDFYFCATVGSPK 106
Score = 26.5 bits (59), Expect = 4.7
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 144 TSGDMMVPEGGSAKLVCKAKGY 165
T ++V +AK+ C+ K
Sbjct: 7 TPSSLLVQTNHTAKMSCEVKSI 28
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 28.0 bits (63), Expect = 0.98
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 81 EHVITNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV 119
E I+ R S T ++ N+ +L IR +R ED G Y C+
Sbjct: 46 EQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKA 85
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 29.2 bits (66), Expect = 1.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 98 NTWTLNIRSVRREDRGYYMCQ 118
+TL I + ED Y CQ
Sbjct: 203 TDFTLTISRLEPEDFAVYYCQ 223
Score = 27.3 bits (61), Expect = 4.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG +V G S +L C A G+
Sbjct: 9 SGGGVVQPGKSLRLSCAASGF 29
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus
musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A
1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L
1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Length = 113
Score = 28.2 bits (64), Expect = 1.2
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 101 TLNIRSVRREDRGYYMC-QVNTNPMT 125
TL I V ED G Y C Q P T
Sbjct: 77 TLKISRVEAEDLGVYFCSQSTHVPFT 102
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Length = 259
Score = 28.8 bits (65), Expect = 1.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG +V G S KL CKA GY
Sbjct: 138 SGAELVKPGASVKLSCKASGY 158
>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus,
canine, feline, FAB footprint, immune system; 12.50A
{Mus musculus}
Length = 120
Score = 27.9 bits (63), Expect = 1.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG +V GG KL C A GY
Sbjct: 7 SGTELVAPGGGVKLSCGASGY 27
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 27.7 bits (62), Expect = 1.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 81 EHVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMT 125
E I+ R T + + +++L I +R ED G Y CQ + +P
Sbjct: 46 EKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADYSPSC 91
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 28.9 bits (65), Expect = 1.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG +V G S KL CKA GY
Sbjct: 7 SGAELVKPGASVKLSCKASGY 27
>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA
MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B
Length = 120
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG ++ G S K+ CKA GY
Sbjct: 7 SGTVVARPGASVKMSCKASGY 27
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 28.8 bits (65), Expect = 1.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG +V G S K+ CKA GY
Sbjct: 29 SGPELVKPGASVKMSCKASGY 49
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 28.8 bits (65), Expect = 1.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG +V G S K+ CKA GY
Sbjct: 7 SGAEVVRPGTSVKVSCKASGY 27
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 28.8 bits (65), Expect = 1.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG +V G S +L C A G+
Sbjct: 8 SGAELVKPGASVRLSCTASGF 28
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 27.9 bits (61), Expect = 1.5
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 149 MVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSS-QKVFSVESEVLSLTKVT 206
+ G +L C K P +TW + + + + +S ++ ++ +L V
Sbjct: 22 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVL 81
Query: 207 RSEMGAYQCIAANGVPPTVSKRLMLHV 233
++ G+Y+C A S L+V
Sbjct: 82 PNDNGSYRCSANFQSNLIESHSTTLYV 108
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A
{Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 27.6 bits (62), Expect = 1.7
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 87 NARLSVTHNDANT-WTLNIRSVRREDRGYYMCQVNTNPMTKQMAF 130
+ T+N T + L SV+ D Y C ++ N +++ F
Sbjct: 58 SRGFEATYNKEATSFHLQKASVQESDSAVYYCALSENYGNEKITF 102
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC,
immune system; HET: NAG; 2.40A {Mus musculus} SCOP:
b.1.1.1 PDB: 3b9k_B*
Length = 115
Score = 27.5 bits (62), Expect = 2.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 95 NDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
+D+ L+I +V+ ED +Y C +P
Sbjct: 74 SDSRRPFLSIMNVKPEDSDFYFCATVGSPK 103
Score = 26.0 bits (58), Expect = 5.5
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 144 TSGDMMVPEGGSAKLVCKAKGY 165
T ++V +AK+ C+ K
Sbjct: 4 TPSSLLVQTNHTAKMSCEVKSI 25
>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta,
UCHT1-SCFV, immunoglobulin fold, antibody-antigen
complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B
Length = 122
Score = 27.2 bits (61), Expect = 2.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG +V G S K+ CKA GY
Sbjct: 7 SGPELVKPGASMKISCKASGY 27
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 28.1 bits (63), Expect = 2.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG +V G S KL C A G+
Sbjct: 33 SGAELVRSGTSVKLSCTASGF 53
Score = 27.3 bits (61), Expect = 4.8
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTN 122
+++L I + ED Y CQ ++
Sbjct: 229 TSYSLTISRMEAEDAATYYCQQRSS 253
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain variable
fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 28.1 bits (63), Expect = 2.4
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 98 NTWTLNIRSVRREDRGYYMCQ 118
+TL I V ED Y CQ
Sbjct: 218 TDFTLTITRVEPEDFALYYCQ 238
Score = 27.7 bits (62), Expect = 2.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG + G S K+ C+A GY
Sbjct: 13 SGAEVKKPGASVKVSCQASGY 33
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 28.1 bits (63), Expect = 2.4
Identities = 5/33 (15%), Positives = 7/33 (21%)
Query: 87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
T + L + S Y C
Sbjct: 197 PDGYKATRTTQEDFFLTLESASPSQTSLYFCAS 229
Score = 27.4 bits (61), Expect = 4.2
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
+ V EG S +L CK TP + W +
Sbjct: 9 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQY 41
Score = 26.2 bits (58), Expect = 9.4
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 23/88 (26%)
Query: 98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-----LEVVIPP--------------- 137
+++ L SV R D Y C V+ +++F L V
Sbjct: 74 SSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGG 133
Query: 138 ---DISSEETSGDMMVPEGGSAKLVCKA 162
+ + ++ + + G + L C+
Sbjct: 134 GGSEAAVTQSPRNKVTVTGENVTLSCRQ 161
>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin,
immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB:
1dvf_D 1mvu_B 1ap2_B 2ap2_B
Length = 121
Score = 27.1 bits (61), Expect = 2.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG +V G S KL C A G+
Sbjct: 7 SGAELVEPGASVKLSCTASGF 27
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin
variable domain-like beta-sandwich, homodimer, immune
system; 2.00A {Mus musculus} SCOP: b.1.1.1
Length = 117
Score = 27.3 bits (60), Expect = 2.5
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 80 HEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
+ + S T N+ + L I+ +R D G Y+C+V
Sbjct: 56 NTVGFLDYPFCSGTFNE-SRVNLTIQGLRAVDTGLYLCKV 94
>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment,
immunoglobulin, immune syste; 3.10A {Mus musculus}
Length = 122
Score = 27.1 bits (61), Expect = 2.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG V G S K+ CKA GY
Sbjct: 7 SGPEDVKPGASVKISCKASGY 27
>2c9i_A Green fluorescent protein ASFP499; beta-barrel, bioluminescence,
luminescence, luminescent protein; HET: CRQ; 1.82A
{Anemonia sulcata}
Length = 226
Score = 27.9 bits (62), Expect = 2.7
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 14/71 (19%)
Query: 57 FPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYM 116
FP + M+ T E VI + L + L + D G+
Sbjct: 124 FPANGPVMQ-----KKTCGWEPSTETVIPRDGGLLLRDT----PALML-----ADGGHLS 169
Query: 117 CQVNTNPMTKQ 127
C + T +K+
Sbjct: 170 CFMETTYKSKK 180
>2gez_B L-asparaginase beta subunit; isoaspartyl aminopeptidase,
NTN-hydrolase, autoproteolysis, taspase, sodium binding,
hydrolase; 2.60A {Lupinus luteus}
Length = 133
Score = 27.3 bits (61), Expect = 2.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 49 VNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH 80
V+ G I P +++ M A D + +AI
Sbjct: 99 VSAAGEIAMPFNTTGMFRACATEDGYSEIAIW 130
>3ir8_A Large stokes shift fluorescent protein; beta barrel; HET: CRQ;
1.63A {Montipora SP} PDB: 2wht_A* 2whs_A* 2whu_A*
2p4m_A* 2arl_A* 1mov_A* 1mou_A*
Length = 221
Score = 27.5 bits (61), Expect = 3.1
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 14/71 (19%)
Query: 57 FPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYM 116
FP + M+ T+ E + + L + L + E G+Y+
Sbjct: 125 FPPNGPVMQ-----KKTQGWEPSTERLFARDGMLIGN----DYMALKL-----EGGGHYL 170
Query: 117 CQVNTNPMTKQ 127
C+ + K+
Sbjct: 171 CEFKSTYKAKK 181
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 27.4 bits (60), Expect = 3.1
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 13/88 (14%)
Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
+ V GS ++ C NK ++ + + K + V +
Sbjct: 11 KLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILL---DEQAQWKHYLVSN--------- 58
Query: 207 RSEMGAYQCIAANGVPPTVSKRLMLHVH 234
S QC S + V+
Sbjct: 59 ISHDTVLQCHFTCS-GKQESMNSNVSVY 85
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin,
immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB:
1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Length = 111
Score = 26.7 bits (60), Expect = 3.1
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 101 TLNIRSVRREDRGYYMC-QVNTNPMT 125
TL I V +D Y C Q N +P T
Sbjct: 76 TLIIDPVEADDVATYYCQQTNEDPYT 101
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 26.6 bits (59), Expect = 3.6
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 11/70 (15%)
Query: 149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIV---RSNPPSSQKVFSVESEVLSLTKV 205
M+ +G +VC R + + P ++ F + V
Sbjct: 19 MISQGTFVTVVCSYS-DKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGP-------V 70
Query: 206 TRSEMGAYQC 215
+ G Y C
Sbjct: 71 NETITGHYSC 80
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen
bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1
PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A
1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A*
3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...
Length = 114
Score = 26.7 bits (60), Expect = 3.6
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 101 TLNIRSVRREDRGYYMC-QVNTNPMT 125
TL I S++ ED Y C Q ++P +
Sbjct: 78 TLTISSLQAEDVAVYYCQQYYSHPYS 103
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar,
carbohydrate metabolism, pentose phosphate pathway; HET:
R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP:
c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Length = 162
Score = 27.1 bits (61), Expect = 3.7
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 87 NARLSVTHNDAN 98
A L+ HN+A
Sbjct: 95 TAALAREHNNAQ 106
>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope
proteins, structural genomics, antibody epito
flavivirus, niaid; 2.50A {Mus musculus}
Length = 126
Score = 26.7 bits (60), Expect = 3.7
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 101 TLNIRSVRREDRGYYMC-QVNTNPMT 125
TL I SV +D Y C Q N +P T
Sbjct: 76 TLTIDSVETDDAATYYCQQNNEDPYT 101
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B
ribose 5-phosphate isomera (RPIB), R5P; 1.40A
{Trypanosoma cruzi} PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Length = 179
Score = 27.2 bits (61), Expect = 3.8
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 85 TNNARLSVTHNDAN 98
A +S HNDAN
Sbjct: 113 HYTAAMSRIHNDAN 126
>1u9k_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immunity, immune system
receptor, immune system; 1.76A {Mus musculus} SCOP:
b.1.1.1
Length = 114
Score = 26.5 bits (59), Expect = 3.9
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 95 NDANTWTLNIRSVRREDRGYYMC 117
+ + ++ D G Y C
Sbjct: 71 PSEAMLQVQMTDLQVTDSGLYRC 93
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A
{Clostridium thermocellum} PDB: 3hee_A*
Length = 149
Score = 26.7 bits (60), Expect = 4.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98
+A KV I+A AV + AR+S HNDAN
Sbjct: 74 AANKVPGIRA---AV--CTN---SYMARMSREHNDAN 102
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 27.5 bits (60), Expect = 4.6
Identities = 6/54 (11%), Positives = 16/54 (29%)
Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
++ PD ++ D ++ G C ++ + + N
Sbjct: 192 QISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGEN 245
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target
9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16}
Length = 316
Score = 27.2 bits (61), Expect = 4.7
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE 81
G + + G +S VN + P + M A D AV I E
Sbjct: 194 GTAEKWAPFFWHAGAKGFTS-GL---VN-----LLPQKAVEMLEALRNNDNDAVWRIWE 243
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET:
RB5; 2.07A {Clostridium thermocellum} PDB: 3ph4_A*
Length = 169
Score = 26.8 bits (60), Expect = 4.9
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98
+A KV I+A AV + AR+S HNDAN
Sbjct: 94 AANKVPGIRA---AV--CTN---SYMARMSREHNDAN 122
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 26.4 bits (57), Expect = 5.4
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 150 VPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPP----SSQKVFSVESEVLSLTK 204
G K+ C K P +TW + + + P S ++ SV VL
Sbjct: 26 AWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKP 85
Query: 205 VTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
+ S+ G+Y C S + +HV
Sbjct: 86 IHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.30A {Giardia lamblia}
Length = 166
Score = 26.8 bits (60), Expect = 5.4
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98
+A K+ I+ A+ +A ++ HN+AN
Sbjct: 95 AANKMKGIRC---AL--CST---EYDAEMARKHNNAN 123
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 26.4 bits (59), Expect = 5.6
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 101 TLNIRSVRREDRGYYMCQ 118
+++I ++ D G Y C
Sbjct: 80 SISISNITPADAGTYYCV 97
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single
chain FV, immune system; 2.67A {Homo sapiens}
Length = 143
Score = 26.4 bits (59), Expect = 5.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMT 125
TL I ++ ED Y CQ ++ +T
Sbjct: 71 TLTISNLEPEDFAVYYCQQRSDWVT 95
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein
initiative, MCSG, structural genomics, midwest center
for S genomics; HET: MSE; 2.01A {Streptococcus
pneumoniae}
Length = 216
Score = 26.7 bits (59), Expect = 5.9
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 88 ARLSVTHNDANTWTLNIRSVRR 109
A L N N ++
Sbjct: 102 AYLYSQINGGNALSIPYAKGFG 123
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism,
pentose phosphate pathway; 2.10A {Escherichia coli} PDB:
1nn4_A
Length = 149
Score = 26.3 bits (59), Expect = 6.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 85 TNNARLSVTHNDAN 98
+A+LS +ND N
Sbjct: 90 PYSAQLSRQNNDTN 103
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 26.9 bits (60), Expect = 6.1
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 145 SGDMMVPEGGSAKLVCKAKGY 165
SG + G S K+ C +
Sbjct: 7 SGAEVKKPGSSVKVSCTSSEV 27
Score = 26.5 bits (59), Expect = 7.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 98 NTWTLNIRSVRREDRGYYMCQ 118
NT +L I ++ ED Y C
Sbjct: 209 NTASLTITGLQPEDEADYYCS 229
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 26.6 bits (58), Expect = 6.4
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
++P GGS + C + K+ ++ ++KV+ + +
Sbjct: 10 ILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGN--NRKVYELSN---------VQ 58
Query: 209 EMGAYQCIAANGVPPTVSKRLMLHVH 234
E C + + + L V+
Sbjct: 59 EDSQPMCYSNCP-DGQSTAKTFLTVY 83
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; 1.90A {Thermotoga maritima} SCOP:
c.121.1.1
Length = 155
Score = 26.4 bits (59), Expect = 6.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 85 TNNARLSVTHNDAN 98
+ ARL+ +HN+AN
Sbjct: 101 PDMARLARSHNNAN 114
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB:
3sdw_A 3qd5_A*
Length = 184
Score = 26.5 bits (59), Expect = 6.9
Identities = 3/11 (27%), Positives = 5/11 (45%)
Query: 88 ARLSVTHNDAN 98
++ NDA
Sbjct: 124 VERAILSNDAQ 134
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.95A {Anaplasma
phagocytophilum}
Length = 148
Score = 26.3 bits (59), Expect = 6.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 85 TNNARLSVTHNDAN 98
T A+LS HNDAN
Sbjct: 95 TMLAKLSREHNDAN 108
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain;
antibody-peptide complex, immunoglobulin fold, type II'
beta turn., immune system; 1.80A {Mus musculus} SCOP:
b.1.1.1 PDB: 1i8i_A
Length = 107
Score = 25.5 bits (57), Expect = 6.9
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 101 TLNIRSVRREDRGYYMC-QVNTNPMT 125
I + ED G Y C Q P+T
Sbjct: 72 VFTIENTLSEDVGDYYCLQSFNVPLT 97
>2hqk_A CYAN fluorescent chromoprotein; 11-stranded beta barrel,
luminescent protein; HET: PIA; 1.19A {Clavularia SP}
PDB: 2ote_A* 2otb_A* 2vzx_A* 3adf_A* 2gw4_A*
Length = 219
Score = 26.4 bits (58), Expect = 7.0
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 14/71 (19%)
Query: 57 FPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYM 116
FP + M+ T A E + + L L + E G++
Sbjct: 122 FPPNGPVMQ-----KKTTGWDASTERMYVRDGVLKGD----VKHKLLL-----EGGGHHR 167
Query: 117 CQVNTNPMTKQ 127
T K+
Sbjct: 168 VDFKTIYRAKK 178
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4;
1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Length = 464
Score = 26.7 bits (60), Expect = 8.6
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 123 PMTKQMA-----FLEVVIPPDISSE 142
M +++A +LEV++ P + E
Sbjct: 273 EMDEEVAKSLKKYLEVIVAPSFTQE 297
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 25.8 bits (57), Expect = 8.7
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 101 TLNIRSVRREDRGYYMCQ 118
+++I ++ D G Y C
Sbjct: 75 SISISNITPADAGTYYCV 92
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein
hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Length = 108
Score = 25.5 bits (57), Expect = 9.0
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 101 TLNIRSVRREDRGYYMC-QVNTNPMT 125
TL I SV+ ED Y C Q +P T
Sbjct: 72 TLTISSVQAEDFADYHCGQTYNHPYT 97
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 25.7 bits (57), Expect = 9.5
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 101 TLNIRSVRREDRGYYMCQ 118
++ I +V ED G Y C
Sbjct: 79 SIRISNVTPEDAGTYYCV 96
>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex,
scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L
3h3p_L 3lhp_L
Length = 146
Score = 25.6 bits (57), Expect = 9.6
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 101 TLNIRSVRREDRGYYMC-QVNTNPMT 125
TL I S+ ED Y C Q +P T
Sbjct: 87 TLTISSLEPEDFAIYYCQQYRYSPRT 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.389
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,574,075
Number of extensions: 199452
Number of successful extensions: 1955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1263
Number of HSP's successfully gapped: 715
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)