BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7942
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein
Disulfide Isomerase
Length = 228
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 23/159 (14%)
Query: 40 KAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVF 99
++ + S+V V G FKD S+ AK F + A +DD+ F +S
Sbjct: 18 ESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITS------------------ 59
Query: 100 VTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHE 159
N+D+ ++Y +D D V +FKKFDEGR N+EG + E L F+ LPLV+EF +
Sbjct: 60 ----NSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLL-DFIKHNQLPLVIEFTEQ 114
Query: 160 TAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
TA KIFGGEIK+H+L+F K+ Y+ +T A+ F
Sbjct: 115 TAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 153
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 23/159 (14%)
Query: 40 KAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVF 99
++ + S+V V G FKD S+ AK F + A +DD+ F +S
Sbjct: 29 ESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITS------------------ 70
Query: 100 VTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHE 159
N+D+ ++Y +D D V +FKKFDEGR N+EG + E L F+ LPLV+EF +
Sbjct: 71 ----NSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLL-DFIKHNQLPLVIEFTEQ 125
Query: 160 TAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
TA KIFGGEIK+H+L+F K+ Y+ +T A+ F
Sbjct: 126 TAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 164
>pdb|2BJX|A Chain A, Protein Disulfide Isomerase
pdb|1BJX|A Chain A, Human Protein Disulfide Isomerase, Nmr, 24 Structures
Length = 110
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 23/122 (18%)
Query: 40 KAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVF 99
++ + S+V V G FKD S+ AK F + A +DD+ F +S
Sbjct: 12 ESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITS------------------ 53
Query: 100 VTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHE 159
N+D+ ++Y +D D V +FKKFDEGR N+EG + E L F+ LPLV+EF +
Sbjct: 54 ----NSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKE-NLLDFIKHNQLPLVIEFTEQ 108
Query: 160 TA 161
TA
Sbjct: 109 TA 110
>pdb|4F9Z|D Chain D, Crystal Structure Of Human Erp27
pdb|4F9Z|A Chain A, Crystal Structure Of Human Erp27
pdb|4F9Z|B Chain B, Crystal Structure Of Human Erp27
pdb|4F9Z|C Chain C, Crystal Structure Of Human Erp27
pdb|4F9Z|E Chain E, Crystal Structure Of Human Erp27
Length = 227
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 27 GPPAKE----FTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSE 82
GP A + T V FIA ++V V G F+D EI +
Sbjct: 4 GPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDL---------EIPA------------ 42
Query: 83 LAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGP---ASDEA 139
+ + K + F ST++++L Y++ +T+ +F+ D ++N E + D
Sbjct: 43 -VPILHSMVQKFPGVSFGISTDSEVLTHYNITGNTICLFRLVDNEQLNLEDEDIESIDAT 101
Query: 140 ALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
L +F+ SL +V E+N T +F I+ HLL+ +KA+ YE + Q AK F
Sbjct: 102 KLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLF 160
>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein
Disulphide- Isomerase Modulate Exposure Of The Substrate
Binding B' Domain
Length = 147
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 149 SLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
LPLV+EF +TA KIFGGEIK+H+L+F K+ Y+ +T A+ F
Sbjct: 12 QLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 61
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 7 GERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFN 66
G G RTA+ IV+ L K+ GP + + +E K FI+D + G F D+ SE F
Sbjct: 89 GAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFL 148
Query: 67 EIASKVDDLVFDASSELAKTFNEIASKVDDLVF-----VTSTNADILAEYSVDDDTVAIF 121
+ AS + D A + + NE + ++ +T+ D Y+ T
Sbjct: 149 KAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKI 208
Query: 122 KKF 124
KKF
Sbjct: 209 KKF 211
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPA 30
P E GR A+DIVNWL K+TGP A
Sbjct: 96 PKEYTAGREADDIVNWLKKRTGPAA 120
>pdb|2L4C|A Chain A, Solution Structure Of The B Domain Of Human Erp27
Length = 124
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 29/131 (22%)
Query: 27 GPPAKE----FTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSE 82
GP A + T V FIA ++V V G F+D EI +
Sbjct: 16 GPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDL---------EIPA------------ 54
Query: 83 LAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEG---PASDEA 139
+ + K + F ST++++L Y++ +T+ +F+ D ++N E + D
Sbjct: 55 -VPILHSMVQKFPGVSFGISTDSEVLTHYNITGNTICLFRLVDNEQLNLEDEDIESIDAT 113
Query: 140 ALRKFLSTQSL 150
L +F+ SL
Sbjct: 114 KLSRFIEINSL 124
>pdb|2H8L|A Chain A, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|B Chain B, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|C Chain C, Crystal Structure Of The Bb' Fragment Of Erp57
Length = 252
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 28 PPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTF 87
P + + +E K FI+D + G F D+ SE F + AS + D A + +
Sbjct: 6 PASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLV 65
Query: 88 NEIASKVDDLVF-----VTSTNADILAEYSVDDDTVAIFKKF 124
NE + ++ +T+ D Y+ T KKF
Sbjct: 66 NEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKXTSGKIKKF 107
>pdb|3DYU|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), H32
pdb|3DYU|B Chain B, Crystal Structure Of Snx9px-Bar (230-595), H32
pdb|3DYU|C Chain C, Crystal Structure Of Snx9px-Bar (230-595), H32
Length = 366
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 32/185 (17%)
Query: 26 TGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAK 85
TGP KE+ + + A LA F+ + + + DA +E K
Sbjct: 199 TGPLPKEYQKIGK------------------ALQSLATVFSSSGYQGETDLNDAITEAGK 240
Query: 86 TFNEIASKV-----DDLVFVTSTNADILAEYSVDDDTVAIF-------KKFDEGRVNYEG 133
T+ EIAS V DL F+ N + D + K+ D+ +
Sbjct: 241 TYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKI 300
Query: 134 PASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQT 193
D+ + K +S S L E NH + +I+ + S + ++ + YE+ E ++
Sbjct: 301 TLQDKQNMVKRVSIMSYALQAEMNHFHSNRIY--DYNSVIRLYLEQQVQFYETIAEKLRQ 358
Query: 194 VAKDF 198
F
Sbjct: 359 ALSRF 363
>pdb|2RAJ|A Chain A, So4 Bound Px-Bar Membrane Remodeling Unit Of Sorting Nexin
9
pdb|2RAK|A Chain A, Pi(3)p Bound Px-Bar Membrane Remodeling Unit Of Sorting
Nexin 9
Length = 392
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 32/185 (17%)
Query: 26 TGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAK 85
TGP KE+ + + A LA F+ + + + DA +E K
Sbjct: 225 TGPLPKEYQKIGK------------------ALQSLATVFSSSGYQGETDLNDAITEAGK 266
Query: 86 TFNEIASKV-----DDLVFVTSTNADILAEYSVDDDTVAIF-------KKFDEGRVNYEG 133
T+ EIAS V DL F+ N + D + K+ D+ +
Sbjct: 267 TYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKI 326
Query: 134 PASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQT 193
D+ + K +S S L E NH + +I+ + S + ++ + YE+ E ++
Sbjct: 327 TLQDKQNMVKRVSIMSYALQAEMNHFHSNRIY--DYNSVIRLYLEQQVQFYETIAEKLRQ 384
Query: 194 VAKDF 198
F
Sbjct: 385 ALSRF 389
>pdb|1G8Y|A Chain A, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|B Chain B, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|C Chain C, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|D Chain D, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|E Chain E, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|F Chain F, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|G Chain G, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|H Chain H, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|I Chain I, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|J Chain J, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|K Chain K, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|L Chain L, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1NLF|A Chain A, Crystal Structure Of Dna Helicase Repa In Complex With
Sulfate At 1.95 A Resolution
pdb|1NLF|B Chain B, Crystal Structure Of Dna Helicase Repa In Complex With
Sulfate At 1.95 A Resolution
pdb|1NLF|C Chain C, Crystal Structure Of Dna Helicase Repa In Complex With
Sulfate At 1.95 A Resolution
pdb|1OLO|A Chain A, Hexameric Replicative Dna Helicase Repa From Plasmid
Rsf1010 - Cubic Crystal Structure
pdb|1OLO|B Chain B, Hexameric Replicative Dna Helicase Repa From Plasmid
Rsf1010 - Cubic Crystal Structure
Length = 279
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 99 FVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDE 138
+++S + E+ VDDD F +F + NY P +D
Sbjct: 211 YLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADR 250
>pdb|3UKJ|A Chain A, Crystal Structure Of Extracellular Ligand-Binding Receptor
From Rhodopseudomonas Palustris Haa2
pdb|4EYO|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Haa2 In
Complex With P-Coumaric Acid
pdb|4EYQ|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Haa2 In
Complex With Caffeic Acid3-(4- Hydroxy-Phenyl)pyruvic
Acid
Length = 362
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 99 FVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEG----PASDEAALRKFLSTQSLPLVV 154
FVT + AD++ SV TVA+ +E +V + P + E A + Q +P+
Sbjct: 64 FVTESKADVIXGSSVTPPTVAVSNVANEAQVPHIALAPLPVTPERAKWSVVXPQPIPIXG 123
Query: 155 EFNHETAQKIFGGEIKSHLLVFFSKAAG 182
+ +E +K IK+ + +S + G
Sbjct: 124 KVLYEHXKK---NNIKTVGYIGYSDSYG 148
>pdb|3QAN|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
Length = 538
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 113 VDDDTVAIFKKFDEG----RVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGE 168
V + TVA+ K G R NY GP DE A K +S +E + + + GGE
Sbjct: 337 VLEKTVALAKNLTVGDPTNRDNYMGPVIDEKAFEKIMS------YIEIGKKEGRLMTGGE 390
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,537,530
Number of Sequences: 62578
Number of extensions: 206003
Number of successful extensions: 714
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 32
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)