Query psy7942
Match_columns 216
No_of_seqs 117 out of 1182
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 22:45:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190|consensus 99.9 8.4E-27 1.8E-31 209.8 16.5 183 3-209 108-295 (493)
2 PF01216 Calsequestrin: Calseq 99.9 1.6E-23 3.5E-28 179.2 19.1 187 3-211 121-312 (383)
3 PF13848 Thioredoxin_6: Thiore 99.9 1E-20 2.3E-25 151.0 13.4 135 54-211 1-137 (184)
4 TIGR01130 ER_PDI_fam protein d 99.8 4.6E-18 1E-22 153.6 19.6 184 3-210 84-277 (462)
5 PTZ00102 disulphide isomerase; 99.8 2.1E-17 4.6E-22 150.6 19.0 176 3-213 115-291 (477)
6 KOG0912|consensus 99.7 9.7E-16 2.1E-20 129.6 13.6 181 7-213 87-272 (375)
7 cd02981 PDI_b_family Protein D 99.6 5.4E-15 1.2E-19 106.6 11.6 96 30-148 1-97 (97)
8 cd03069 PDI_b_ERp57 PDIb famil 99.6 7.9E-15 1.7E-19 107.9 11.1 96 30-149 2-104 (104)
9 cd03066 PDI_b_Calsequestrin_mi 99.6 1.2E-14 2.5E-19 106.6 11.7 98 29-149 1-101 (102)
10 KOG4277|consensus 99.6 3.9E-14 8.4E-19 120.0 13.1 180 3-211 109-303 (468)
11 cd03068 PDI_b_ERp72 PDIb famil 99.5 1.7E-13 3.6E-18 101.4 11.1 97 29-148 1-107 (107)
12 KOG0190|consensus 99.3 2.6E-11 5.7E-16 110.0 13.6 164 17-207 10-186 (493)
13 cd03007 PDI_a_ERp29_N PDIa fam 99.2 1.7E-10 3.7E-15 86.3 9.9 97 30-148 3-115 (116)
14 KOG0912|consensus 99.2 1.8E-10 3.9E-15 97.9 10.2 147 36-206 3-160 (375)
15 PTZ00102 disulphide isomerase; 99.1 3.5E-09 7.6E-14 96.6 16.3 152 30-207 34-193 (477)
16 TIGR01130 ER_PDI_fam protein d 99.1 4.1E-09 8.8E-14 95.3 15.6 149 30-203 3-160 (462)
17 cd03006 PDI_a_EFP1_N PDIa fami 99.0 4.3E-09 9.3E-14 78.6 10.4 96 28-145 9-113 (113)
18 PF00085 Thioredoxin: Thioredo 99.0 3.8E-09 8.2E-14 75.9 9.7 96 31-148 2-103 (103)
19 cd03003 PDI_a_ERdj5_N PDIa fam 98.9 1.5E-08 3.2E-13 73.4 10.9 95 29-145 2-101 (101)
20 cd03004 PDI_a_ERdj5_C PDIa fam 98.9 2E-08 4.4E-13 73.0 10.6 96 29-145 2-104 (104)
21 cd02996 PDI_a_ERp44 PDIa famil 98.9 2.4E-08 5.2E-13 73.2 10.3 95 30-145 3-108 (108)
22 cd03001 PDI_a_P5 PDIa family, 98.8 1.4E-07 3E-12 68.0 10.5 95 30-145 2-102 (103)
23 cd03002 PDI_a_MPD1_like PDI fa 98.7 2.6E-07 5.6E-12 67.4 10.5 96 30-146 2-109 (109)
24 cd03065 PDI_b_Calsequestrin_N 98.7 2.2E-07 4.8E-12 70.0 10.0 95 30-147 11-117 (120)
25 TIGR01126 pdi_dom protein disu 98.7 2.7E-07 5.9E-12 66.1 10.0 92 36-148 3-101 (102)
26 PF01216 Calsequestrin: Calseq 98.7 3.9E-07 8.5E-12 79.1 12.4 151 30-206 36-199 (383)
27 cd02999 PDI_a_ERp44_like PDIa 98.7 1.6E-07 3.4E-12 68.4 8.3 90 33-145 6-100 (100)
28 PF13848 Thioredoxin_6: Thiore 98.6 1.2E-06 2.6E-11 69.5 13.7 123 3-147 51-184 (184)
29 cd02961 PDI_a_family Protein D 98.6 5.9E-07 1.3E-11 63.5 10.2 91 35-145 4-101 (101)
30 cd02989 Phd_like_TxnDC9 Phosdu 98.6 1.2E-06 2.7E-11 65.1 12.0 97 29-145 5-112 (113)
31 TIGR02187 GlrX_arch Glutaredox 98.6 2.3E-06 5E-11 70.6 14.5 145 45-210 18-173 (215)
32 cd02994 PDI_a_TMX PDIa family, 98.6 9.9E-07 2.1E-11 63.6 10.4 93 30-147 3-101 (101)
33 KOG0191|consensus 98.5 2.6E-06 5.6E-11 76.2 14.2 152 37-209 38-204 (383)
34 cd02995 PDI_a_PDI_a'_C PDIa fa 98.5 1.1E-06 2.3E-11 63.2 9.6 94 30-145 2-104 (104)
35 cd03005 PDI_a_ERp46 PDIa famil 98.5 8.8E-07 1.9E-11 63.6 9.1 92 31-145 3-102 (102)
36 KOG4277|consensus 98.5 8.1E-07 1.8E-11 75.9 10.0 131 41-197 36-177 (468)
37 PRK10996 thioredoxin 2; Provis 98.5 1.7E-06 3.7E-11 66.7 10.6 93 35-148 41-138 (139)
38 cd02993 PDI_a_APS_reductase PD 98.5 1.5E-06 3.3E-11 63.9 9.9 95 30-145 3-109 (109)
39 cd02998 PDI_a_ERp38 PDIa famil 98.4 1.9E-06 4E-11 62.0 9.1 94 31-145 3-105 (105)
40 cd02956 ybbN ybbN protein fami 98.4 2.1E-06 4.6E-11 61.2 9.2 88 38-146 2-96 (96)
41 cd02997 PDI_a_PDIR PDIa family 98.4 2.6E-06 5.6E-11 61.3 9.4 94 30-145 2-104 (104)
42 TIGR01068 thioredoxin thioredo 98.4 3.8E-06 8.2E-11 59.8 10.0 93 35-148 2-100 (101)
43 cd02983 P5_C P5 family, C-term 98.4 4.1E-06 9E-11 64.0 10.5 102 28-149 2-115 (130)
44 cd02948 TRX_NDPK TRX domain, T 98.4 4.9E-06 1.1E-10 60.5 10.5 93 32-147 3-101 (102)
45 PHA02278 thioredoxin-like prot 98.4 4.1E-06 8.9E-11 61.4 9.6 90 34-144 2-100 (103)
46 cd02957 Phd_like Phosducin (Ph 98.4 4.3E-06 9.3E-11 61.9 9.6 93 30-145 6-112 (113)
47 PTZ00051 thioredoxin; Provisio 98.4 5.3E-06 1.2E-10 59.3 9.7 91 30-142 2-96 (98)
48 PRK09381 trxA thioredoxin; Pro 98.3 9E-06 2E-10 59.4 10.5 98 29-148 4-107 (109)
49 TIGR00424 APS_reduc 5'-adenyly 98.3 7.7E-06 1.7E-10 74.7 12.2 99 28-147 351-461 (463)
50 PLN02309 5'-adenylylsulfate re 98.3 7.4E-06 1.6E-10 74.8 12.0 99 29-148 346-456 (457)
51 cd02963 TRX_DnaJ TRX domain, D 98.3 6.8E-06 1.5E-10 60.7 9.8 92 35-147 10-110 (111)
52 cd03070 PDI_b_ERp44 PDIb famil 98.3 6.6E-06 1.4E-10 58.9 8.4 87 30-140 1-89 (91)
53 cd03072 PDI_b'_ERp44 PDIb' fam 98.3 1.5E-06 3.3E-11 64.6 5.3 57 153-212 1-60 (111)
54 KOG0191|consensus 98.3 8.7E-06 1.9E-10 72.8 11.1 128 4-151 112-254 (383)
55 PTZ00443 Thioredoxin domain-co 98.3 9.3E-06 2E-10 67.6 10.3 97 29-148 31-138 (224)
56 cd02953 DsbDgamma DsbD gamma f 98.2 1.5E-05 3.2E-10 57.8 9.6 90 37-146 2-104 (104)
57 KOG0910|consensus 98.2 9.8E-06 2.1E-10 62.9 8.8 96 32-148 46-147 (150)
58 cd03000 PDI_a_TMX3 PDIa family 98.2 1.9E-05 4.1E-10 57.4 9.5 89 37-148 7-103 (104)
59 cd02985 TRX_CDSP32 TRX family, 98.2 3.2E-05 6.9E-10 56.3 10.6 90 35-146 2-100 (103)
60 cd02984 TRX_PICOT TRX domain, 98.1 4.9E-05 1.1E-09 54.0 10.1 89 35-145 1-96 (97)
61 cd02947 TRX_family TRX family; 98.1 2.8E-05 6.1E-10 53.6 8.6 88 38-146 2-93 (93)
62 cd02954 DIM1 Dim1 family; Dim1 98.1 1.8E-05 3.9E-10 59.0 7.8 70 36-124 2-78 (114)
63 cd02982 PDI_b'_family Protein 98.1 5.4E-05 1.2E-09 54.4 10.1 83 45-147 11-101 (103)
64 cd02965 HyaE HyaE family; HyaE 98.1 2.5E-05 5.4E-10 58.0 8.0 101 18-142 2-109 (111)
65 cd02987 Phd_like_Phd Phosducin 98.0 6E-05 1.3E-09 60.4 10.5 98 29-148 63-174 (175)
66 cd02949 TRX_NTR TRX domain, no 98.0 5.5E-05 1.2E-09 54.2 9.1 85 41-146 8-97 (97)
67 TIGR02187 GlrX_arch Glutaredox 98.0 0.00016 3.4E-09 59.7 11.6 120 3-147 86-214 (215)
68 PF07912 ERp29_N: ERp29, N-ter 97.8 0.0002 4.3E-09 53.7 9.4 104 30-149 6-119 (126)
69 cd02950 TxlA TRX-like protein 97.8 0.00016 3.5E-09 55.9 9.0 94 37-148 11-109 (142)
70 cd03073 PDI_b'_ERp72_ERp57 PDI 97.8 4.6E-05 1E-09 56.6 5.5 56 153-211 1-61 (111)
71 PLN00410 U5 snRNP protein, DIM 97.8 0.00039 8.5E-09 53.8 10.2 76 30-124 5-88 (142)
72 cd02975 PfPDO_like_N Pyrococcu 97.7 0.00056 1.2E-08 50.7 10.2 85 43-147 19-108 (113)
73 COG3118 Thioredoxin domain-con 97.7 0.0004 8.7E-09 59.6 10.4 100 30-151 25-132 (304)
74 KOG0907|consensus 97.7 0.00047 1E-08 50.8 9.4 86 41-148 15-105 (106)
75 PTZ00062 glutaredoxin; Provisi 97.7 0.00094 2E-08 54.8 11.9 113 33-178 3-120 (204)
76 cd02988 Phd_like_VIAF Phosduci 97.6 0.0013 2.9E-08 53.4 11.9 96 29-148 83-191 (192)
77 cd02986 DLP Dim1 family, Dim1- 97.6 0.00059 1.3E-08 50.8 8.8 70 36-124 2-78 (114)
78 cd02962 TMX2 TMX2 family; comp 97.5 0.00076 1.6E-08 52.9 9.1 75 30-124 30-118 (152)
79 cd02992 PDI_a_QSOX PDIa family 97.5 0.0015 3.2E-08 48.5 9.9 92 30-141 3-108 (114)
80 PRK11509 hydrogenase-1 operon 97.5 0.00095 2.1E-08 51.0 8.7 109 16-149 8-124 (132)
81 cd02951 SoxW SoxW family; SoxW 97.5 0.0015 3.3E-08 48.8 9.6 97 36-147 3-117 (125)
82 cd03074 PDI_b'_Calsequestrin_C 97.4 0.00038 8.2E-09 51.0 5.4 62 151-212 1-65 (120)
83 cd02982 PDI_b'_family Protein 97.4 0.00035 7.6E-09 50.1 5.4 52 159-211 3-54 (103)
84 cd02983 P5_C P5 family, C-term 97.4 0.0005 1.1E-08 52.4 6.0 61 151-212 2-68 (130)
85 TIGR01295 PedC_BrcD bacterioci 97.3 0.0033 7.1E-08 47.3 9.7 91 35-146 12-121 (122)
86 KOG0908|consensus 97.2 0.0024 5.2E-08 53.6 8.6 98 29-148 2-105 (288)
87 TIGR03143 AhpF_homolog putativ 96.9 0.044 9.6E-07 51.5 15.0 155 37-213 355-519 (555)
88 PRK00293 dipZ thiol:disulfide 96.9 0.013 2.8E-07 55.3 11.4 99 30-148 454-569 (571)
89 cd03067 PDI_b_PDIR_N PDIb fami 96.8 0.0098 2.1E-07 43.2 7.9 97 30-147 3-110 (112)
90 TIGR00411 redox_disulf_1 small 96.8 0.014 3E-07 39.8 8.6 74 49-147 2-80 (82)
91 cd03003 PDI_a_ERdj5_N PDIa fam 96.2 0.016 3.4E-07 41.4 6.1 59 151-210 1-59 (101)
92 cd02952 TRP14_like Human TRX-r 96.2 0.034 7.5E-07 41.7 8.0 76 33-123 6-99 (119)
93 cd03072 PDI_b'_ERp44 PDIb' fam 95.9 0.077 1.7E-06 39.2 8.3 93 36-148 6-107 (111)
94 TIGR00412 redox_disulf_2 small 95.8 0.094 2E-06 35.8 8.2 69 51-146 3-76 (76)
95 cd03004 PDI_a_ERdj5_C PDIa fam 95.8 0.029 6.2E-07 40.2 5.8 61 151-211 1-61 (104)
96 PF02114 Phosducin: Phosducin; 95.6 0.071 1.5E-06 45.5 8.4 99 30-149 127-238 (265)
97 PF00085 Thioredoxin: Thioredo 95.6 0.041 8.9E-07 38.8 6.0 60 153-212 1-60 (103)
98 KOG0914|consensus 95.3 0.041 8.9E-07 45.5 5.4 78 30-126 126-217 (265)
99 COG4232 Thiol:disulfide interc 95.2 0.12 2.5E-06 48.5 8.9 97 32-148 458-567 (569)
100 TIGR02740 TraF-like TraF-like 95.0 0.2 4.4E-06 42.9 9.1 89 46-149 166-264 (271)
101 cd03026 AhpF_NTD_C TRX-GRX-lik 95.0 0.27 5.8E-06 34.8 8.4 72 45-141 11-86 (89)
102 cd03002 PDI_a_MPD1_like PDI fa 94.9 0.078 1.7E-06 38.1 5.6 58 153-210 2-59 (109)
103 cd03006 PDI_a_EFP1_N PDIa fami 94.7 0.12 2.5E-06 38.4 6.2 60 151-211 9-71 (113)
104 cd03001 PDI_a_P5 PDIa family, 94.7 0.11 2.4E-06 36.7 5.9 58 153-210 2-59 (103)
105 PRK15317 alkyl hydroperoxide r 94.6 1.3 2.8E-05 41.2 14.2 97 115-214 61-160 (517)
106 cd02955 SSP411 TRX domain, SSP 94.6 0.3 6.5E-06 36.8 8.2 70 35-123 4-89 (124)
107 PF11009 DUF2847: Protein of u 94.1 0.46 1E-05 34.9 8.0 92 31-141 2-104 (105)
108 cd03011 TlpA_like_ScsD_MtbDsbE 94.1 0.75 1.6E-05 33.6 9.4 96 45-142 19-119 (123)
109 PRK14018 trifunctional thiored 94.0 0.67 1.4E-05 43.4 10.8 104 43-147 53-171 (521)
110 cd02995 PDI_a_PDI_a'_C PDIa fa 94.0 0.22 4.7E-06 35.1 6.1 59 153-211 2-62 (104)
111 cd03073 PDI_b'_ERp72_ERp57 PDI 93.8 0.64 1.4E-05 34.3 8.4 90 37-147 7-109 (111)
112 cd02973 TRX_GRX_like Thioredox 93.7 0.4 8.7E-06 31.3 6.6 53 49-120 2-58 (67)
113 cd02967 mauD Methylamine utili 93.5 0.85 1.9E-05 32.8 8.7 87 45-133 20-112 (114)
114 TIGR03140 AhpF alkyl hydropero 93.2 3.6 7.9E-05 38.2 14.4 96 115-213 62-160 (515)
115 cd02998 PDI_a_ERp38 PDIa famil 92.5 0.52 1.1E-05 33.1 6.1 59 153-211 2-62 (105)
116 cd03005 PDI_a_ERp46 PDIa famil 92.5 0.35 7.5E-06 34.0 5.2 56 153-210 2-60 (102)
117 cd02959 ERp19 Endoplasmic reti 92.4 0.6 1.3E-05 34.6 6.5 68 37-123 10-85 (117)
118 cd02965 HyaE HyaE family; HyaE 92.4 0.38 8.3E-06 35.6 5.3 58 153-211 12-71 (111)
119 cd02996 PDI_a_ERp44 PDIa famil 92.3 0.44 9.5E-06 34.3 5.6 58 152-210 2-65 (108)
120 TIGR02661 MauD methylamine deh 92.2 3.3 7.1E-05 33.2 11.1 101 45-148 73-178 (189)
121 TIGR01126 pdi_dom protein disu 92.0 0.38 8.3E-06 33.6 4.9 54 156-210 1-56 (102)
122 TIGR01068 thioredoxin thioredo 91.8 0.45 9.7E-06 33.1 5.1 55 157-211 2-56 (101)
123 PRK09381 trxA thioredoxin; Pro 91.8 0.58 1.2E-05 33.6 5.7 58 152-210 4-62 (109)
124 cd02993 PDI_a_APS_reductase PD 91.4 0.68 1.5E-05 33.5 5.8 57 153-210 3-63 (109)
125 cd02957 Phd_like Phosducin (Ph 91.3 0.79 1.7E-05 33.4 6.1 59 151-210 4-64 (113)
126 PRK03147 thiol-disulfide oxido 91.1 3.3 7.2E-05 32.0 9.9 102 45-147 60-170 (173)
127 PF13098 Thioredoxin_2: Thiore 91.0 1.1 2.5E-05 32.1 6.7 43 102-145 69-112 (112)
128 cd03010 TlpA_like_DsbE TlpA-li 90.6 4 8.6E-05 29.9 9.5 95 45-141 24-126 (127)
129 cd02997 PDI_a_PDIR PDIa family 90.4 1 2.3E-05 31.6 5.9 58 153-211 2-61 (104)
130 cd02992 PDI_a_QSOX PDIa family 90.2 0.9 2E-05 33.4 5.5 57 152-208 2-61 (114)
131 cd02961 PDI_a_family Protein D 90.2 0.87 1.9E-05 31.2 5.3 55 155-210 2-58 (101)
132 TIGR00385 dsbE periplasmic pro 90.0 5.3 0.00011 31.4 10.2 101 45-148 62-170 (173)
133 PRK10996 thioredoxin 2; Provis 90.0 0.93 2E-05 34.6 5.6 57 153-210 37-93 (139)
134 COG3118 Thioredoxin domain-con 89.3 0.81 1.8E-05 39.6 5.2 59 150-208 22-82 (304)
135 PRK15412 thiol:disulfide inter 88.9 8.3 0.00018 30.7 10.7 100 45-147 67-174 (185)
136 cd02989 Phd_like_TxnDC9 Phosdu 88.8 1.9 4E-05 31.7 6.3 58 152-211 5-63 (113)
137 cd02994 PDI_a_TMX PDIa family, 88.6 1.5 3.2E-05 30.9 5.6 55 153-210 3-58 (101)
138 cd02958 UAS UAS family; UAS is 88.5 7.6 0.00016 28.1 9.9 90 38-147 9-109 (114)
139 cd03009 TryX_like_TryX_NRX Try 88.0 4.7 0.0001 29.8 8.2 78 45-123 17-108 (131)
140 KOG2603|consensus 87.5 7.5 0.00016 34.0 9.9 105 25-150 37-167 (331)
141 cd02962 TMX2 TMX2 family; comp 87.5 1.7 3.7E-05 33.9 5.6 59 152-210 29-89 (152)
142 KOG1672|consensus 86.7 3.2 7E-05 33.8 6.9 76 30-124 68-147 (211)
143 cd02954 DIM1 Dim1 family; Dim1 86.1 2.3 5E-05 31.6 5.4 41 171-211 16-56 (114)
144 cd02964 TryX_like_family Trypa 86.0 11 0.00024 27.9 9.3 79 45-123 16-108 (132)
145 cd03067 PDI_b_PDIR_N PDIb fami 85.9 2.4 5.2E-05 31.0 5.2 58 152-211 2-60 (112)
146 TIGR02738 TrbB type-F conjugat 85.7 12 0.00026 29.2 9.5 92 45-147 49-151 (153)
147 PTZ00443 Thioredoxin domain-co 85.4 2.6 5.7E-05 35.1 6.0 60 151-210 30-93 (224)
148 cd02985 TRX_CDSP32 TRX family, 85.4 2.7 5.8E-05 30.0 5.4 51 159-210 4-55 (103)
149 cd02956 ybbN ybbN protein fami 85.2 3.3 7.1E-05 28.7 5.7 41 171-211 14-54 (96)
150 cd02949 TRX_NTR TRX domain, no 85.1 2.9 6.2E-05 29.4 5.4 49 162-210 6-54 (97)
151 cd02966 TlpA_like_family TlpA- 85.1 5.1 0.00011 27.7 6.8 78 46-123 19-106 (116)
152 PF13728 TraF: F plasmid trans 84.9 11 0.00025 31.0 9.6 85 45-143 119-212 (215)
153 cd02984 TRX_PICOT TRX domain, 83.8 3.7 8E-05 28.4 5.5 52 159-210 3-55 (97)
154 PTZ00051 thioredoxin; Provisio 83.6 4 8.8E-05 28.3 5.6 55 154-210 3-58 (98)
155 TIGR00424 APS_reduc 5'-adenyly 83.3 2.9 6.3E-05 38.6 5.9 58 151-208 351-411 (463)
156 cd02948 TRX_NDPK TRX domain, T 83.3 3.6 7.7E-05 29.3 5.3 53 157-210 6-59 (102)
157 PF07449 HyaE: Hydrogenase-1 e 83.3 3.8 8.3E-05 30.1 5.4 73 31-123 12-91 (107)
158 PLN02919 haloacid dehalogenase 82.5 13 0.00027 38.1 10.5 103 45-148 419-535 (1057)
159 PF13192 Thioredoxin_3: Thiore 82.4 3.7 8E-05 27.7 4.8 38 103-146 37-76 (76)
160 TIGR03143 AhpF_homolog putativ 82.4 24 0.00052 33.2 11.8 112 7-145 435-554 (555)
161 TIGR00411 redox_disulf_1 small 81.2 4.1 8.9E-05 27.2 4.8 40 173-212 3-42 (82)
162 smart00594 UAS UAS domain. 80.5 20 0.00044 26.3 9.1 96 32-145 12-121 (122)
163 cd02987 Phd_like_Phd Phosducin 80.5 7.1 0.00015 31.0 6.6 61 149-210 60-123 (175)
164 cd02950 TxlA TRX-like protein 80.2 4.6 9.9E-05 30.9 5.2 48 161-209 13-60 (142)
165 cd02988 Phd_like_VIAF Phosduci 79.9 11 0.00024 30.5 7.6 63 147-210 78-142 (192)
166 PRK15317 alkyl hydroperoxide r 79.8 42 0.00092 31.2 12.4 115 7-148 75-197 (517)
167 TIGR01295 PedC_BrcD bacterioci 79.7 6.7 0.00014 29.2 5.8 57 152-209 7-63 (122)
168 PHA02125 thioredoxin-like prot 78.5 16 0.00034 24.4 6.9 19 101-119 32-51 (75)
169 KOG1731|consensus 78.2 2.3 5.1E-05 39.9 3.4 117 30-167 41-183 (606)
170 PLN00410 U5 snRNP protein, DIM 76.6 7.7 0.00017 30.0 5.4 51 160-210 13-64 (142)
171 cd02947 TRX_family TRX family; 76.0 11 0.00023 24.9 5.6 49 161-211 3-51 (93)
172 cd03012 TlpA_like_DipZ_like Tl 75.4 29 0.00063 25.3 9.2 79 45-123 22-114 (126)
173 cd02952 TRP14_like Human TRX-r 74.6 7.2 0.00016 29.1 4.7 40 171-210 23-69 (119)
174 cd02986 DLP Dim1 family, Dim1- 73.1 12 0.00025 27.9 5.4 39 173-211 18-56 (114)
175 KOG3171|consensus 72.8 20 0.00044 29.9 7.2 102 29-151 139-253 (273)
176 KOG0910|consensus 72.8 12 0.00027 29.2 5.7 60 150-210 42-102 (150)
177 PLN02309 5'-adenylylsulfate re 72.6 9.7 0.00021 35.2 5.9 60 151-210 345-407 (457)
178 cd02981 PDI_b_family Protein D 71.0 15 0.00032 25.4 5.5 45 161-209 10-54 (97)
179 PF13905 Thioredoxin_8: Thiore 70.3 11 0.00024 25.9 4.6 39 171-209 3-43 (95)
180 cd02999 PDI_a_ERp44_like PDIa 69.9 11 0.00024 26.7 4.7 39 171-210 20-58 (100)
181 cd03008 TryX_like_RdCVF Trypar 69.9 49 0.0011 25.5 8.8 79 45-123 24-121 (146)
182 PTZ00062 glutaredoxin; Provisi 69.1 14 0.00031 30.3 5.6 49 159-208 7-55 (204)
183 KOG0907|consensus 68.9 16 0.00035 26.6 5.4 40 171-211 23-62 (106)
184 PF00837 T4_deiodinase: Iodoth 68.9 70 0.0015 26.9 9.9 114 30-148 84-236 (237)
185 PF13905 Thioredoxin_8: Thiore 68.5 35 0.00075 23.3 9.3 78 46-123 1-91 (95)
186 cd03066 PDI_b_Calsequestrin_mi 67.7 18 0.00038 25.8 5.4 51 154-208 3-55 (102)
187 cd03065 PDI_b_Calsequestrin_N 63.5 17 0.00037 27.1 4.7 59 152-211 10-75 (120)
188 cd03069 PDI_b_ERp57 PDIb famil 63.0 19 0.00041 25.7 4.8 46 159-208 9-54 (104)
189 cd02953 DsbDgamma DsbD gamma f 62.9 19 0.00041 25.3 4.8 47 162-209 5-54 (104)
190 PHA02278 thioredoxin-like prot 62.9 20 0.00043 25.8 4.9 49 160-209 6-56 (103)
191 TIGR03140 AhpF alkyl hydropero 61.8 1.4E+02 0.003 27.8 12.3 114 7-147 76-197 (515)
192 KOG0911|consensus 61.7 43 0.00093 28.0 7.0 73 30-123 3-79 (227)
193 cd02963 TRX_DnaJ TRX domain, D 60.3 20 0.00043 25.8 4.5 39 171-209 26-65 (111)
194 cd03071 PDI_b'_NRX PDIb' famil 57.6 17 0.00036 26.9 3.5 41 155-198 3-44 (116)
195 TIGR02739 TraF type-F conjugat 57.5 1.2E+02 0.0026 25.8 9.3 82 46-143 150-242 (256)
196 PF05768 DUF836: Glutaredoxin- 57.2 58 0.0013 22.0 6.7 45 101-146 36-81 (81)
197 cd03007 PDI_a_ERp29_N PDIa fam 56.7 28 0.0006 25.9 4.8 52 153-209 3-59 (116)
198 PF13899 Thioredoxin_7: Thiore 55.8 53 0.0012 22.0 5.9 23 37-59 8-30 (82)
199 cd03068 PDI_b_ERp72 PDIb famil 52.3 54 0.0012 23.6 5.7 47 159-208 9-55 (107)
200 KOG0913|consensus 50.5 14 0.00031 31.0 2.5 53 101-156 80-136 (248)
201 PRK13728 conjugal transfer pro 47.7 1.5E+02 0.0032 23.9 8.4 84 50-147 73-169 (181)
202 TIGR00412 redox_disulf_2 small 46.1 55 0.0012 21.8 4.6 34 176-209 5-38 (76)
203 cd02975 PfPDO_like_N Pyrococcu 44.6 48 0.001 24.0 4.4 38 172-210 24-62 (113)
204 cd03000 PDI_a_TMX3 PDIa family 44.0 52 0.0011 23.0 4.5 40 171-210 17-59 (104)
205 PF00837 T4_deiodinase: Iodoth 41.4 46 0.00099 28.0 4.2 48 161-209 95-144 (237)
206 cd03017 PRX_BCP Peroxiredoxin 41.2 1.4E+02 0.003 21.7 8.7 96 46-142 23-136 (140)
207 PF13728 TraF: F plasmid trans 40.6 69 0.0015 26.3 5.2 41 171-211 122-162 (215)
208 cd02974 AhpF_NTD_N Alkyl hydro 39.0 1.4E+02 0.003 21.1 8.4 31 115-146 61-91 (94)
209 PF13743 Thioredoxin_5: Thiore 38.3 37 0.0008 26.8 3.2 32 104-135 136-169 (176)
210 cd02969 PRX_like1 Peroxiredoxi 38.1 1.8E+02 0.004 22.2 9.8 87 45-133 24-126 (171)
211 PRK13703 conjugal pilus assemb 37.1 1.5E+02 0.0033 25.1 6.8 82 46-143 143-235 (248)
212 cd03026 AhpF_NTD_C TRX-GRX-lik 37.0 1.3E+02 0.0028 20.8 5.5 42 170-212 13-54 (89)
213 KOG4093|consensus 36.5 56 0.0012 24.9 3.6 85 36-147 51-142 (144)
214 cd02967 mauD Methylamine utili 36.1 86 0.0019 22.0 4.6 35 171-205 23-57 (114)
215 PF05402 PqqD: Coenzyme PQQ sy 35.9 38 0.00082 21.9 2.4 34 9-44 26-59 (68)
216 TIGR02738 TrbB type-F conjugat 35.8 1.7E+02 0.0037 22.6 6.5 39 172-210 53-91 (153)
217 cd02991 UAS_ETEA UAS family, E 35.6 1.8E+02 0.0038 21.3 8.1 40 106-146 67-110 (116)
218 TIGR02740 TraF-like TraF-like 34.5 95 0.0021 26.5 5.3 41 171-211 168-208 (271)
219 cd02968 SCO SCO (an acronym fo 34.3 89 0.0019 22.8 4.6 38 171-208 24-66 (142)
220 cd02964 TryX_like_family Trypa 33.5 96 0.0021 22.7 4.7 39 171-209 19-62 (132)
221 cd04436 DEP_fRgd2 DEP (Disheve 32.4 80 0.0017 22.2 3.6 21 8-28 25-45 (84)
222 TIGR02742 TrbC_Ftype type-F co 31.4 2.3E+02 0.005 21.4 8.0 24 101-124 57-81 (130)
223 cd02966 TlpA_like_family TlpA- 31.3 1.2E+02 0.0027 20.3 4.8 41 171-211 21-62 (116)
224 KOG3170|consensus 30.8 3.1E+02 0.0068 22.7 10.2 97 30-148 93-200 (240)
225 PF08534 Redoxin: Redoxin; In 30.7 2.2E+02 0.0047 20.9 8.5 85 45-131 27-129 (146)
226 PF13462 Thioredoxin_4: Thiore 30.4 1.1E+02 0.0023 22.9 4.6 40 170-209 13-54 (162)
227 PRK11509 hydrogenase-1 operon 30.0 2.5E+02 0.0054 21.3 6.5 65 141-210 10-78 (132)
228 PF14595 Thioredoxin_9: Thiore 29.2 74 0.0016 23.9 3.4 54 157-210 29-83 (129)
229 PF12976 DUF3860: Domain of Un 28.2 1.4E+02 0.003 20.7 4.2 40 11-54 17-57 (92)
230 cd03009 TryX_like_TryX_NRX Try 28.0 1.3E+02 0.0029 21.8 4.6 40 171-210 20-64 (131)
231 PF09949 DUF2183: Uncharacteri 27.9 1.6E+02 0.0036 21.1 4.8 32 172-207 66-97 (100)
232 TIGR02739 TraF type-F conjugat 26.7 1.5E+02 0.0032 25.3 5.1 40 172-211 153-192 (256)
233 PF09673 TrbC_Ftype: Type-F co 25.4 1.7E+02 0.0037 21.3 4.7 23 101-123 57-80 (113)
234 PF11009 DUF2847: Protein of u 25.3 88 0.0019 22.9 3.0 56 159-214 8-64 (105)
235 PRK10877 protein disulfide iso 24.9 1.2E+02 0.0026 25.2 4.2 40 103-148 190-230 (232)
236 PRK13703 conjugal pilus assemb 23.7 1.8E+02 0.0039 24.6 5.1 40 172-211 146-185 (248)
237 PF02966 DIM1: Mitosis protein 23.3 3.4E+02 0.0075 20.7 7.9 72 31-121 3-81 (133)
238 PLN02399 phospholipid hydroper 22.6 4.6E+02 0.0099 21.9 9.3 28 45-72 98-128 (236)
239 PF10087 DUF2325: Uncharacteri 21.7 2.9E+02 0.0062 19.2 8.0 66 11-78 6-79 (97)
240 PRK13789 phosphoribosylamine-- 21.7 5.9E+02 0.013 23.1 8.3 37 34-72 55-91 (426)
241 PRK15000 peroxidase; Provision 21.6 4.3E+02 0.0093 21.2 10.0 104 46-149 34-162 (200)
242 PLN02412 probable glutathione 21.3 3.9E+02 0.0084 20.6 9.0 28 45-72 28-58 (167)
243 cd02972 DsbA_family DsbA famil 21.2 1.7E+02 0.0036 19.1 3.7 37 174-210 2-38 (98)
244 PHA02554 13 neck protein; Prov 21.0 1.4E+02 0.0031 26.0 3.9 31 11-41 4-35 (311)
245 cd03019 DsbA_DsbA DsbA family, 20.8 2.1E+02 0.0046 21.6 4.7 40 170-209 16-55 (178)
246 cd03012 TlpA_like_DipZ_like Tl 20.8 2.5E+02 0.0055 20.2 4.9 37 171-207 25-62 (126)
247 KOG3414|consensus 20.7 3.9E+02 0.0085 20.4 7.2 72 32-122 7-85 (142)
248 PF00578 AhpC-TSA: AhpC/TSA fa 20.4 2.1E+02 0.0046 20.1 4.4 39 170-208 26-66 (124)
No 1
>KOG0190|consensus
Probab=99.95 E-value=8.4e-27 Score=209.84 Aligned_cols=183 Identities=34% Similarity=0.543 Sum_probs=166.6
Q ss_pred CCC-cccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEec
Q psy7942 3 SCL-PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDAS 80 (216)
Q Consensus 3 ~g~-~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~ 80 (216)
+|. +.+|+|+|++++||.||+++++|+++.|.+.++++.|+.+.++++||||.+.++.. .+|..+|..+ +++.|+
T Consensus 108 nG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~-~~~~~~a~~l~~d~~F~-- 184 (493)
T KOG0190|consen 108 NGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLA-ESFFDAASKLRDDYKFA-- 184 (493)
T ss_pred cCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccch-HHHHHHHHhccccceee--
Confidence 577 59999999999999999999999999999999999999999999999999888777 8888888887 899999
Q ss_pred chhhHHHHhhhhccccceeeecccHHHHHhcCCCCCe---EEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeC
Q psy7942 81 SELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDT---VAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFN 157 (216)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~---i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~ 157 (216)
+|++++++++++++.+. +++++++|+....|+|++ +.+.|.+||..+++|+|+++|
T Consensus 185 --------------------~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~-~~~~l~~Fi~~~~~plv~~ft 243 (493)
T KOG0190|consen 185 --------------------HTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSF-TPELLKKFIQENSLPLVTEFT 243 (493)
T ss_pred --------------------ccCcHhHHhhccCCCCCcceEEeccccccchhhccccc-CHHHHHHHHHHhcccccceec
Confidence 99999999999988665 999999999899999999 888899999999999999999
Q ss_pred cchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942 158 HETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD 209 (216)
Q Consensus 158 ~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~ 209 (216)
.++...++.+.+..++++|.+......+.+++.++++|++||++++|+..|-
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~ 295 (493)
T KOG0190|consen 244 VANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDP 295 (493)
T ss_pred ccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccceEEEEECh
Confidence 9998899998776667777665555689999999999999999999999853
No 2
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.92 E-value=1.6e-23 Score=179.25 Aligned_cols=187 Identities=20% Similarity=0.295 Sum_probs=150.1
Q ss_pred CCCcccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHh-CCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEec
Q psy7942 3 SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIA-DSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDAS 80 (216)
Q Consensus 3 ~g~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~ 80 (216)
+|..++|.|.|+|+.||+|+......||..|++..+++.|-. +.++.+||||.+..++.+++|.++|..+ +-+.|.
T Consensus 121 d~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFf-- 198 (383)
T PF01216_consen 121 DGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFF-- 198 (383)
T ss_dssp TTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEE--
T ss_pred CCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHhhcCceeEE--
Confidence 577899999999999999999999999999999999999987 5689999999998899999999999999 889999
Q ss_pred chhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcch
Q psy7942 81 SELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHET 160 (216)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~ 160 (216)
+|+++.+|++++++...|-+|++|.+.++...|+..+...|++||..|..|.++.++.++
T Consensus 199 --------------------Atfd~~vAk~L~lK~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~ 258 (383)
T PF01216_consen 199 --------------------ATFDKKVAKKLGLKLNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPED 258 (383)
T ss_dssp --------------------EE-SHHHHHHHT-STT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGG
T ss_pred --------------------EEecchhhhhcCccccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhh
Confidence 999999999999998999999999988999998776999999999999999999999999
Q ss_pred HHHhhccCCc-ceEEEEEeCCccchhhhhHHHHHHHHhccCc--eEEEEcCCCC
Q psy7942 161 AQKIFGGEIK-SHLLVFFSKAAGHYESHFEPVQTVAKDFREK--EEQDEDDDQP 211 (216)
Q Consensus 161 ~~~~~~~~~~-~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~--~~f~~~d~~~ 211 (216)
+..+++..+. .+++.|++.+.++.-++++.|+++|+++.++ ++++|+|-..
T Consensus 259 m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~ 312 (383)
T PF01216_consen 259 MFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDD 312 (383)
T ss_dssp HHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG
T ss_pred hhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCC
Confidence 9999987654 4566688887788899999999999999875 8999998543
No 3
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.85 E-value=1e-20 Score=150.98 Aligned_cols=135 Identities=32% Similarity=0.507 Sum_probs=120.8
Q ss_pred ecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCCCCccccc
Q psy7942 54 FKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYE 132 (216)
Q Consensus 54 ~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~ 132 (216)
|++.++++++.|.++|+.+ +++.|+ ++.+++++++++++.|+|++||++++.+..|+
T Consensus 1 F~~~~~~~~~~f~~~A~~~~~~~~F~----------------------~~~~~~~~~~~~~~~p~i~~~k~~~~~~~~y~ 58 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLKGDYQFG----------------------VTFNEELAKKYGIKEPTIVVYKKFDEKPVVYD 58 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHTTTSEEE----------------------EEE-HHHHHHCTCSSSEEEEEECTTTSEEEES
T ss_pred CCCcccHHHHHHHHHHHhCcCCcEEE----------------------EEcHHHHHHHhCCCCCcEEEeccCCCCceecc
Confidence 5677889999999999998 689999 89899999999999999999999888889999
Q ss_pred CC-CCCHHHHHHHHhhcCCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 133 GP-ASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 133 G~-~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
|+ + +.+.|.+||..+++|+|+++|.+++..++..+.+.++++|.+.+.+..+.+.+.++++|+++++++.|+|+|...
T Consensus 59 ~~~~-~~~~l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~ 137 (184)
T PF13848_consen 59 GDKF-TPEELKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD 137 (184)
T ss_dssp SSTT-SHHHHHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT
T ss_pred cccC-CHHHHHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH
Confidence 98 8 999999999999999999999999999999875445666766666677889999999999999999999999873
No 4
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.80 E-value=4.6e-18 Score=153.57 Aligned_cols=184 Identities=34% Similarity=0.533 Sum_probs=152.9
Q ss_pred CCCc--ccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCce-EE
Q psy7942 3 SCLP--GERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLV-FD 78 (216)
Q Consensus 3 ~g~~--~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~-F~ 78 (216)
+|.. ..|.|+|+++.|++|+.+.+++++..+++.++++.+++.+++.+|+|+.+.++.....|.++|..+ +.+. |+
T Consensus 84 ~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 163 (462)
T TIGR01130 84 NGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFFFA 163 (462)
T ss_pred CCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccceEE
Confidence 4554 799999999999999999999999999999999999999999999999887888999999999998 4554 55
Q ss_pred ecchhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCCCCc--ccccCCCC-CHHHHHHHHhhcCCCceee
Q psy7942 79 ASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGR--VNYEGPAS-DEAALRKFLSTQSLPLVVE 155 (216)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~de~~--~~y~G~~~-~~~~l~~fi~~~~~P~v~~ 155 (216)
.+.+..+.++++...+++++|++.++.. ..|.|+.+ +.+.|.+||..+++|++.+
T Consensus 164 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~ 221 (462)
T TIGR01130 164 ----------------------HSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGE 221 (462)
T ss_pred ----------------------ecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEe
Confidence 6677778888888778888888765443 36787652 5689999999999999999
Q ss_pred eCcchHHHhhccCCcceEEEEEeC--CccchhhhhHHHHHHHHhccC-ceEEEEcCCC
Q psy7942 156 FNHETAQKIFGGEIKSHLLVFFSK--AAGHYESHFEPVQTVAKDFRE-KEEQDEDDDQ 210 (216)
Q Consensus 156 ~~~~~~~~~~~~~~~~~lllf~~~--~~~~~~~~~~~l~~vA~~~r~-~~~f~~~d~~ 210 (216)
++.+++..+++.+ + .+++|+.. +....+++.+.++++|++|++ ++.|.++|..
T Consensus 222 ~~~~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~ 277 (462)
T TIGR01130 222 FTQETAAKYFESG-P-LVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEE 277 (462)
T ss_pred eCCcchhhHhCCC-C-ceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHH
Confidence 9999999999876 3 23444432 222347899999999999997 8999999874
No 5
>PTZ00102 disulphide isomerase; Provisional
Probab=99.77 E-value=2.1e-17 Score=150.55 Aligned_cols=176 Identities=30% Similarity=0.393 Sum_probs=146.1
Q ss_pred CCCcccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecc
Q psy7942 3 SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASS 81 (216)
Q Consensus 3 ~g~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~ 81 (216)
+|.+..|.|+|++++|++|+.+.++|++..+++.++++.+.....+++++++.+.+++..+.|.++|..+ +.+.|+
T Consensus 115 ~g~~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~--- 191 (477)
T PTZ00102 115 KGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFF--- 191 (477)
T ss_pred CCceEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceEE---
Confidence 4566799999999999999999999999999999999888888889999999888889999999999988 677887
Q ss_pred hhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchH
Q psy7942 82 ELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETA 161 (216)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~ 161 (216)
.+.+. ..+.+.+|++.++ ...|.+.. +.++|.+||..+.+|++++++.+++
T Consensus 192 -------------------~~~~~--------~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~fI~~~~~P~~~~~~~~~~ 242 (477)
T PTZ00102 192 -------------------VKKHE--------GKNKIYVLHKDEE-GVELFMGK-TKEELEEFVSTESFPLFAEINAENY 242 (477)
T ss_pred -------------------EEcCC--------CCCcEEEEecCCC-CcccCCCC-CHHHHHHHHHHcCCCceeecCccch
Confidence 44322 3478899987544 44444445 8899999999999999999999999
Q ss_pred HHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCCCc
Q psy7942 162 QKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQPKR 213 (216)
Q Consensus 162 ~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~~~ 213 (216)
..++..+. ++++|+. ..++..++.+.++++|++|+++++|+|+|....+
T Consensus 243 ~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~ 291 (477)
T PTZ00102 243 RRYISSGK--DLVWFCG-TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFG 291 (477)
T ss_pred HHHhcCCc--cEEEEec-CHHHHHHHHHHHHHHHHhccCceEEEEEechhcc
Confidence 99998763 3444443 3345678999999999999999999999987654
No 6
>KOG0912|consensus
Probab=99.67 E-value=9.7e-16 Score=129.58 Aligned_cols=181 Identities=23% Similarity=0.352 Sum_probs=140.0
Q ss_pred ccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhH
Q psy7942 7 GERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAK 85 (216)
Q Consensus 7 ~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~ 85 (216)
.+|+|.|+.++|.+|++++..-++.++.|..++++.....+-.+||||.+.+++.++.|.+||.-+ +++.|-+
T Consensus 87 rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V------ 160 (375)
T KOG0912|consen 87 REYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLV------ 160 (375)
T ss_pred hhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEe------
Confidence 389999999999999999999999999999999999987888999999999999999999999987 7887761
Q ss_pred HHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCC-CCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchHHHh
Q psy7942 86 TFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD-EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKI 164 (216)
Q Consensus 86 ~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~d-e~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~ 164 (216)
-. .++.....-++-.+.+|++.. +....|.|++++.+.|..||.+...|+|+|+|-+|+..+
T Consensus 161 ----------------~~-gD~~~~~~~~~~~~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EEL 223 (375)
T KOG0912|consen 161 ----------------GF-GDLLKPHEPPGKNILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEEL 223 (375)
T ss_pred ----------------ec-cccccCCCCCCCceEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHH
Confidence 11 112222222232356666532 223479999999999999999999999999999999999
Q ss_pred hccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc---CceEEEEcCCCCCc
Q psy7942 165 FGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR---EKEEQDEDDDQPKR 213 (216)
Q Consensus 165 ~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r---~~~~f~~~d~~~~~ 213 (216)
-+.+. +.+++|..+++. .....--..++++.- ..++|+..|+.-++
T Consensus 224 tEEGl-PflILf~~kdD~--~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~ 272 (375)
T KOG0912|consen 224 TEEGL-PFLILFRKKDDK--ESEKIFKNAIARELDDETLAINFLTADGKVFK 272 (375)
T ss_pred hhcCC-ceEEEEecCCcc--cHHHHHHHHHHHHhhhhhhccceeecCcceec
Confidence 99885 567788876542 333333445566653 34899999987654
No 7
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=99.63 E-value=5.4e-15 Score=106.60 Aligned_cols=96 Identities=35% Similarity=0.634 Sum_probs=88.0
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL 108 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~ 108 (216)
++.|++.+++++++..+++++||||.+.+++.+++|.++|..+ +++.|+ ++.+++++
T Consensus 1 ~~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~----------------------~~~~~~~~ 58 (97)
T cd02981 1 VKELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFG----------------------HTSDKEVA 58 (97)
T ss_pred CeecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEE----------------------EEChHHHH
Confidence 3578899999999999999999999999999999999999999 689999 88889999
Q ss_pred HhcCCCCCeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 109 AEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 109 ~~~~v~~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
++++++.|++++||++++.+..|+|++ +.++|.+||..+
T Consensus 59 ~~~~~~~~~i~l~~~~~~~~~~y~g~~-~~~~l~~fi~~~ 97 (97)
T cd02981 59 KKLKVKPGSVVLFKPFEEEPVEYDGEF-TEESLVEFIKDN 97 (97)
T ss_pred HHcCCCCCceEEeCCcccCCccCCCCC-CHHHHHHHHHhC
Confidence 999988899999999888888899999 899999999864
No 8
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=99.61 E-value=7.9e-15 Score=107.90 Aligned_cols=96 Identities=25% Similarity=0.582 Sum_probs=87.9
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL 108 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~ 108 (216)
++.|++.+++++|+..+++++||||.+.+++.+++|.++|..+ +++.|+ ++.+++++
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~----------------------~~~~~~~~ 59 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFA----------------------HTSDKQLL 59 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEE----------------------EEChHHHH
Confidence 5788899999999999999999999998889999999999999 899999 89899999
Q ss_pred HhcCCCCCeEEEE------ecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942 109 AEYSVDDDTVAIF------KKFDEGRVNYEGPASDEAALRKFLSTQS 149 (216)
Q Consensus 109 ~~~~v~~p~i~~~------~~~de~~~~y~G~~~~~~~l~~fi~~~~ 149 (216)
+.+++ .|++++| ++++++...|+|++ +.+.|.+||..+.
T Consensus 60 ~~~~~-~~~ivl~~p~~~~~k~de~~~~y~g~~-~~~~l~~fi~~~~ 104 (104)
T cd03069 60 EKYGY-GEGVVLFRPPRLSNKFEDSSVKFDGDL-DSSKIKKFIRENI 104 (104)
T ss_pred HhcCC-CCceEEEechhhhcccCcccccccCcC-CHHHHHHHHHhhC
Confidence 99999 8999999 56788888899999 8999999998763
No 9
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=99.61 E-value=1.2e-14 Score=106.56 Aligned_cols=98 Identities=23% Similarity=0.399 Sum_probs=89.9
Q ss_pred CceeecCHHHHHHhHh-CCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942 29 PAKEFTSVDEIKAFIA-DSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106 (216)
Q Consensus 29 ~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 106 (216)
+++.|++.+++++|++ ++++++||||.+.+++.+++|.++|..+ +++.|+ ++.+++
T Consensus 1 ~v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~----------------------~~~~~~ 58 (102)
T cd03066 1 PVEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFF----------------------ATFDSK 58 (102)
T ss_pred CceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEE----------------------EECcHH
Confidence 4678899999999999 8999999999998899999999999999 899999 999999
Q ss_pred HHHhcCCCCCeEEEEecCCCCcccc-cCCCCCHHHHHHHHhhcC
Q psy7942 107 ILAEYSVDDDTVAIFKKFDEGRVNY-EGPASDEAALRKFLSTQS 149 (216)
Q Consensus 107 v~~~~~v~~p~i~~~~~~de~~~~y-~G~~~~~~~l~~fi~~~~ 149 (216)
+++.+++..|+|+++++++++...| .|+. +.+.|.+||..+.
T Consensus 59 ~~~~~~~~~~~i~l~~~~~e~~~~y~~g~~-~~~~l~~fi~~~~ 101 (102)
T cd03066 59 VAKKLGLKMNEVDFYEPFMEEPVTIPDKPY-SEEELVDFVEEHK 101 (102)
T ss_pred HHHHcCCCCCcEEEeCCCCCCCcccCCCCC-CHHHHHHHHHHhc
Confidence 9999999899999999988888889 8888 9999999998763
No 10
>KOG4277|consensus
Probab=99.57 E-value=3.9e-14 Score=119.99 Aligned_cols=180 Identities=17% Similarity=0.183 Sum_probs=130.7
Q ss_pred CCCcccCCCCCChHHHHHHHHhhhCCCceeecC-HHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEec
Q psy7942 3 SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTS-VDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDAS 80 (216)
Q Consensus 3 ~g~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s-~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~ 80 (216)
+|...+|+|+|+.++|++|+.|..++-+..|.+ ...++..-..+.+.+|+|.. .++++.+.|.++|... --..|.
T Consensus 109 gd~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gt-ge~PL~d~fidAASe~~~~a~Ff-- 185 (468)
T KOG4277|consen 109 GDHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGT-GEGPLFDAFIDAASEKFSVARFF-- 185 (468)
T ss_pred CCeeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeC-CCCcHHHHHHHHhhhheeeeeee--
Confidence 677899999999999999999999998888875 44455566678888887654 4689999999999865 222332
Q ss_pred chhhHHHHhhhhccccceeeecccHHHHHhcC-CCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCc
Q psy7942 81 SELAKTFNEIASKVDDLVFVTSTNADILAEYS-VDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNH 158 (216)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~-v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~ 158 (216)
+.+.+++..++ .+. |+|.+|+ |+...+|+ +. +.++|..||...++|-+-..+.
T Consensus 186 ---------------------SaseeVaPe~~~~kempaV~VFK--Detf~i~d-e~-dd~dLseWinRERf~~fLa~dg 240 (468)
T KOG4277|consen 186 ---------------------SASEEVAPEENDAKEMPAVAVFK--DETFEIED-EG-DDEDLSEWINRERFPGFLAADG 240 (468)
T ss_pred ---------------------ccccccCCcccchhhccceEEEc--cceeEEEe-cC-chhHHHHHHhHhhccchhhccc
Confidence 33344554443 333 9999999 56454543 22 4488999999999999999999
Q ss_pred chHHHhhccCCcceEEEEEeCC-----ccchhhhhHHHHHHHHhccC------ceEEEEcCCCC
Q psy7942 159 ETAQKIFGGEIKSHLLVFFSKA-----AGHYESHFEPVQTVAKDFRE------KEEQDEDDDQP 211 (216)
Q Consensus 159 ~~~~~~~~~~~~~~lllf~~~~-----~~~~~~~~~~l~~vA~~~r~------~~~f~~~d~~~ 211 (216)
.++..+-.++... ++++.+.. ..+..++.....++|+++|+ ++.|.|.|++.
T Consensus 241 flL~EiG~sGKLV-aLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD 303 (468)
T KOG4277|consen 241 FLLAEIGASGKLV-ALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGND 303 (468)
T ss_pred chHHHhCcCCceE-EEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhH
Confidence 8888887776322 33333322 12335688899999999986 36899999864
No 11
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=99.52 E-value=1.7e-13 Score=101.41 Aligned_cols=97 Identities=16% Similarity=0.471 Sum_probs=87.1
Q ss_pred CceeecCHHHHHHhHhCC-CeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942 29 PAKEFTSVDEIKAFIADS-KVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106 (216)
Q Consensus 29 ~v~~l~s~~~~~~~~~~~-~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 106 (216)
+++.|++.++++.|+.+. ++++||||.+.+++.+++|.++|..+ +++.|+ ++.+.+
T Consensus 1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~----------------------~t~~~~ 58 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFH----------------------HTFDSE 58 (107)
T ss_pred CceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEE----------------------EEChHH
Confidence 467899999999999887 99999999988888999999999999 899999 888899
Q ss_pred HHHhcCCCCCeEEEE------ecCCCCcccccCC-CCCHHH-HHHHHhhc
Q psy7942 107 ILAEYSVDDDTVAIF------KKFDEGRVNYEGP-ASDEAA-LRKFLSTQ 148 (216)
Q Consensus 107 v~~~~~v~~p~i~~~------~~~de~~~~y~G~-~~~~~~-l~~fi~~~ 148 (216)
+++++++..|.+++| +++++....|.|+ . +.++ |.+||+.|
T Consensus 59 ~~~~~~~~~~~vvl~rp~~~~~k~e~~~~~~~~~~~-~~~~~~~~f~~~~ 107 (107)
T cd03068 59 IFKSLKVSPGQLVVFQPEKFQSKYEPKSHVLNKKDS-TSEDELKDFFKEH 107 (107)
T ss_pred HHHhcCCCCCceEEECcHHHhhhcCcceeeeecccc-chHHHHHHHHhcC
Confidence 999999989999999 5788999999998 7 5545 99999875
No 12
>KOG0190|consensus
Probab=99.32 E-value=2.6e-11 Score=110.00 Aligned_cols=164 Identities=20% Similarity=0.306 Sum_probs=125.3
Q ss_pred HHHHHHHhhh----CCCceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC--C--CceEEecchhhH
Q psy7942 17 DIVNWLLKKT----GPPAKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV--D--DLVFDASSELAK 85 (216)
Q Consensus 17 ~iv~~l~~~~----~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~--~--~~~F~~~~~~~~ 85 (216)
.++.|+.... +..|-+|+ .++++.++..++.++|.||++|| +.+.++|.++|..+ . .+..+
T Consensus 10 ~~~~~~~~a~~~~~~~~Vl~Lt-~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~La------- 81 (493)
T KOG0190|consen 10 LPVASSEAASVPKAEEDVLVLT-KDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLA------- 81 (493)
T ss_pred cchhhhhhhhcCCcccceEEEe-cccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeE-------
Confidence 3445555443 23455665 58999999999999999999997 57788999999887 2 55666
Q ss_pred HHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCc-chHHH
Q psy7942 86 TFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNH-ETAQK 163 (216)
Q Consensus 86 ~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~-~~~~~ 163 (216)
+|| +|.+.+++.+|++++ ||+.+||++.. ...|+|++ +.++|..|+++.+.|....+.. +.+..
T Consensus 82 -------kVD-----at~~~~~~~~y~v~gyPTlkiFrnG~~-~~~Y~G~r-~adgIv~wl~kq~gPa~~~l~~~~~a~~ 147 (493)
T KOG0190|consen 82 -------KVD-----ATEESDLASKYEVRGYPTLKIFRNGRS-AQDYNGPR-EADGIVKWLKKQSGPASKTLKTVDEAEE 147 (493)
T ss_pred -------Eee-----cchhhhhHhhhcCCCCCeEEEEecCCc-ceeccCcc-cHHHHHHHHHhccCCCceecccHHHHHh
Confidence 888 999999999999997 99999997543 68999999 9999999999999999999985 45666
Q ss_pred hhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEc
Q psy7942 164 IFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDED 207 (216)
Q Consensus 164 ~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~ 207 (216)
+.+.. ...++.|..... ... +.+-.+|...++.+.|...
T Consensus 148 ~l~~~-~~~vig~F~d~~--~~~--~~~~~~a~~l~~d~~F~~t 186 (493)
T KOG0190|consen 148 FLSKK-DVVVIGFFKDLE--SLA--ESFFDAASKLRDDYKFAHT 186 (493)
T ss_pred hccCC-ceEEEEEecccc--cch--HHHHHHHHhccccceeecc
Confidence 66553 333444543221 122 6677778888888888744
No 13
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.20 E-value=1.7e-10 Score=86.33 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=79.3
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEec--CCChhHHHHHHHHHhhC----CCceEEecchhhHHHHhhhhccccceeee--
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFK--DASSELAKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVFVT-- 101 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~--~~~~~~~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~-- 101 (216)
+..|+ .+++++++++++.++|-||. +||.. .+.|.++|..+ +++.++ +|| +
T Consensus 3 ~v~L~-~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~la--------------kVd-----~~d 61 (116)
T cd03007 3 CVDLD-TVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVA--------------EVG-----IKD 61 (116)
T ss_pred eeECC-hhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEE--------------EEe-----ccc
Confidence 34554 58999999999999999999 88875 37788888665 357777 677 6
Q ss_pred ---cccHHHHHhcCCC--C-CeEEEEecCC-CCcccccCC-CCCHHHHHHHHhhc
Q psy7942 102 ---STNADILAEYSVD--D-DTVAIFKKFD-EGRVNYEGP-ASDEAALRKFLSTQ 148 (216)
Q Consensus 102 ---t~~~~v~~~~~v~--~-p~i~~~~~~d-e~~~~y~G~-~~~~~~l~~fi~~~ 148 (216)
+.+.+++++|+|+ + |+|.+|++.+ +.+..|.|+ + +.++|.+||+.+
T Consensus 62 ~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r-~~~~lv~~v~~~ 115 (116)
T cd03007 62 YGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADV-TVDALQRFLKGN 115 (116)
T ss_pred ccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcc-cHHHHHHHHHhc
Confidence 6678999999998 5 9999999863 346889996 8 999999999876
No 14
>KOG0912|consensus
Probab=99.17 E-value=1.8e-10 Score=97.89 Aligned_cols=147 Identities=22% Similarity=0.327 Sum_probs=111.3
Q ss_pred HHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC----C--CceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942 36 VDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV----D--DLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106 (216)
Q Consensus 36 ~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~----~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 106 (216)
.++++..+.++.+++|.||++|| ..+.++|.++|..+ + .+.+| .|| +..+.+
T Consensus 3 ~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg--------------~VD-----cd~e~~ 63 (375)
T KOG0912|consen 3 SENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWG--------------KVD-----CDKEDD 63 (375)
T ss_pred cccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEE--------------Ecc-----cchhhH
Confidence 35778889999999999999998 46788999999876 2 45577 677 888889
Q ss_pred HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcch-HHHhhccCCcceEEEEEeCCccch
Q psy7942 107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHET-AQKIFGGEIKSHLLVFFSKAAGHY 184 (216)
Q Consensus 107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~-~~~~~~~~~~~~lllf~~~~~~~~ 184 (216)
++.+|.+.. ||+.+|+++.-..-.|.|.+ ..++|.+||+...--.+.++.+-+ ++.+...+.+..+.+|-+.+.+++
T Consensus 64 ia~ky~I~KyPTlKvfrnG~~~~rEYRg~R-sVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey 142 (375)
T KOG0912|consen 64 IADKYHINKYPTLKVFRNGEMMKREYRGQR-SVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEY 142 (375)
T ss_pred HhhhhccccCceeeeeeccchhhhhhccch-hHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchH
Confidence 999999986 99999998654456799999 999999999988655578876643 444443243333334544554333
Q ss_pred hhhhHHHHHHHHhccCceEEEE
Q psy7942 185 ESHFEPVQTVAKDFREKEEQDE 206 (216)
Q Consensus 185 ~~~~~~l~~vA~~~r~~~~f~~ 206 (216)
+.+++||.-+|++..|+.
T Consensus 143 ----~~~~kva~~lr~dc~f~V 160 (375)
T KOG0912|consen 143 ----DNLRKVASLLRDDCVFLV 160 (375)
T ss_pred ----HHHHHHHHHHhhccEEEe
Confidence 678899999998876643
No 15
>PTZ00102 disulphide isomerase; Provisional
Probab=99.11 E-value=3.5e-09 Score=96.60 Aligned_cols=152 Identities=18% Similarity=0.323 Sum_probs=115.3
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC----CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVFVTS 102 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t 102 (216)
+..+ +.++++.++++++.++|.|+++||. ...+.|.++|..+ .++.|+ .+| ++
T Consensus 34 v~~l-~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~--------------~vd-----~~ 93 (477)
T PTZ00102 34 VTVL-TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLA--------------SVD-----AT 93 (477)
T ss_pred cEEc-chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEE--------------EEE-----CC
Confidence 4455 4578899999999999999999984 4456788888765 357888 676 88
Q ss_pred ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchHHHhhccCCcceEEEEEeCCc
Q psy7942 103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAA 181 (216)
Q Consensus 103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~ 181 (216)
.+.+++++|++.+ |++++|++. ....|.|.+ +.+.|.+|+....-|.+.+++...-...+.......++..+...
T Consensus 94 ~~~~l~~~~~i~~~Pt~~~~~~g--~~~~y~g~~-~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 169 (477)
T PTZ00102 94 EEMELAQEFGVRGYPTIKFFNKG--NPVNYSGGR-TADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSK- 169 (477)
T ss_pred CCHHHHHhcCCCcccEEEEEECC--ceEEecCCC-CHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccC-
Confidence 8899999999986 999999964 345899999 99999999999999999999875433334343223233333222
Q ss_pred cchhhhhHHHHHHHHhccCceEEEEc
Q psy7942 182 GHYESHFEPVQTVAKDFREKEEQDED 207 (216)
Q Consensus 182 ~~~~~~~~~l~~vA~~~r~~~~f~~~ 207 (216)
.....+.+.++|..+|+...|...
T Consensus 170 --~~~~~~~f~~~a~~~~~~~~F~~~ 193 (477)
T PTZ00102 170 --DSELYKKFEEVADKHREHAKFFVK 193 (477)
T ss_pred --CcHHHHHHHHHHHhccccceEEEE
Confidence 246778899999999988777654
No 16
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.08 E-value=4.1e-09 Score=95.29 Aligned_cols=149 Identities=21% Similarity=0.379 Sum_probs=115.7
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC----CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVFVTS 102 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t 102 (216)
+..| +.++++.+++++++++|.|+++||. ...+.|.++|..+ ..+.|+ .+| +.
T Consensus 3 v~~l-~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~--------------~vd-----~~ 62 (462)
T TIGR01130 3 VLVL-TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLA--------------KVD-----AT 62 (462)
T ss_pred ceEC-CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEE--------------EEE-----CC
Confidence 3455 4678999999999999999999984 4457888888876 247888 566 77
Q ss_pred ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeC-cchHHHhhccCCcceEEEEEeCC
Q psy7942 103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFN-HETAQKIFGGEIKSHLLVFFSKA 180 (216)
Q Consensus 103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~-~~~~~~~~~~~~~~~lllf~~~~ 180 (216)
.++++++++++.+ |++++|++.......|.|.. +.+.|.+||.....|.+.+++ .+.+..+.... ...+++|....
T Consensus 63 ~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~-~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~-~~~vi~~~~~~ 140 (462)
T TIGR01130 63 EEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPR-DADGIVKYMKKQSGPAVKEIETVADLEAFLADD-DVVVIGFFKDL 140 (462)
T ss_pred CcHHHHHhCCCccccEEEEEeCCccceeEecCCC-CHHHHHHHHHHhcCCCceeecCHHHHHHHHhcC-CcEEEEEECCC
Confidence 8889999999986 99999996432247899999 999999999999999999997 56677766654 34555565432
Q ss_pred ccchhhhhHHHHHHHHhccCceE
Q psy7942 181 AGHYESHFEPVQTVAKDFREKEE 203 (216)
Q Consensus 181 ~~~~~~~~~~l~~vA~~~r~~~~ 203 (216)
.......+.++|+.+++.+.
T Consensus 141 ---~~~~~~~~~~~a~~~~~~~~ 160 (462)
T TIGR01130 141 ---DSELNDTFLSVAEKLRDVYF 160 (462)
T ss_pred ---CcHHHHHHHHHHHHhhhccc
Confidence 24667889999999988765
No 17
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.01 E-value=4.3e-09 Score=78.56 Aligned_cols=96 Identities=16% Similarity=0.317 Sum_probs=77.5
Q ss_pred CCceeecCHHHHHHh---HhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceee
Q psy7942 28 PPAKEFTSVDEIKAF---IADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFV 100 (216)
Q Consensus 28 ~~v~~l~s~~~~~~~---~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 100 (216)
+.|..|+ .+++++. ++++++++|.||++||+ .+.+.|.++|+.+ +.+.|+ +||
T Consensus 9 ~~v~~l~-~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~--------------~Vd----- 68 (113)
T cd03006 9 SPVLDFY-KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFV--------------AIN----- 68 (113)
T ss_pred CCeEEec-hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEE--------------EEE-----
Confidence 4566775 4667665 67899999999999984 4567999999998 567888 677
Q ss_pred ecccHHHH-HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942 101 TSTNADIL-AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 101 ~t~~~~v~-~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi 145 (216)
+..+.+++ ++|++.. |++.+|++.. ....|.|.. +.+.|..|+
T Consensus 69 ~d~~~~l~~~~~~I~~~PTl~lf~~g~-~~~~y~G~~-~~~~i~~~~ 113 (113)
T cd03006 69 CWWPQGKCRKQKHFFYFPVIHLYYRSR-GPIEYKGPM-RAPYMEKFV 113 (113)
T ss_pred CCCChHHHHHhcCCcccCEEEEEECCc-cceEEeCCC-CHHHHHhhC
Confidence 77788888 5899986 9999999754 368899999 999999885
No 18
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.01 E-value=3.8e-09 Score=75.92 Aligned_cols=96 Identities=24% Similarity=0.440 Sum_probs=79.8
Q ss_pred eeecCHHHHHHhHhC-CCeEEEEEecCCC---hhHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942 31 KEFTSVDEIKAFIAD-SKVVVAGLFKDAS---SELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLVFVTSTNA 105 (216)
Q Consensus 31 ~~l~s~~~~~~~~~~-~~v~~V~f~~~~~---~~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 105 (216)
..++ .+++++.+.+ ++.++|.|+.+|| ....+.|.+++..+. .+.|+ .+| +..++
T Consensus 2 ~~lt-~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~--------------~vd-----~~~~~ 61 (103)
T PF00085_consen 2 IVLT-DENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFA--------------KVD-----CDENK 61 (103)
T ss_dssp EEES-TTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEE--------------EEE-----TTTSH
T ss_pred EECC-HHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccc--------------hhh-----hhccc
Confidence 3444 5788888886 9999999999998 456779999999994 88888 666 77788
Q ss_pred HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
.++++|++.. |++++|+++.. ...|.|.. +.+.|.+||++|
T Consensus 62 ~l~~~~~v~~~Pt~~~~~~g~~-~~~~~g~~-~~~~l~~~i~~~ 103 (103)
T PF00085_consen 62 ELCKKYGVKSVPTIIFFKNGKE-VKRYNGPR-NAESLIEFIEKH 103 (103)
T ss_dssp HHHHHTTCSSSSEEEEEETTEE-EEEEESSS-SHHHHHHHHHHH
T ss_pred hhhhccCCCCCCEEEEEECCcE-EEEEECCC-CHHHHHHHHHcC
Confidence 9999999986 99999997443 44899998 999999999875
No 19
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.94 E-value=1.5e-08 Score=73.42 Aligned_cols=95 Identities=15% Similarity=0.250 Sum_probs=77.8
Q ss_pred CceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942 29 PAKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN 104 (216)
Q Consensus 29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~ 104 (216)
.+..++ .++++..+.+.++++|.|+.+|| ..+.+.|.++|+++ +.+.|+ .|| +..+
T Consensus 2 ~~~~l~-~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~--------------~vd-----~~~~ 61 (101)
T cd03003 2 EIVTLD-RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIG--------------AVN-----CGDD 61 (101)
T ss_pred CeEEcC-HhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEE--------------EEe-----CCcc
Confidence 345664 67899988888999999999997 45578999999998 567787 566 7778
Q ss_pred HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942 105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi 145 (216)
+++++++++.. |++++|+++. ....|.|.. +.+.|.+|+
T Consensus 62 ~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~-~~~~l~~f~ 101 (101)
T cd03003 62 RMLCRSQGVNSYPSLYVFPSGM-NPEKYYGDR-SKESLVKFA 101 (101)
T ss_pred HHHHHHcCCCccCEEEEEcCCC-CcccCCCCC-CHHHHHhhC
Confidence 89999999986 9999998643 366799999 999999884
No 20
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.91 E-value=2e-08 Score=72.96 Aligned_cols=96 Identities=8% Similarity=0.198 Sum_probs=77.8
Q ss_pred CceeecCHHHHHHhHh-CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942 29 PAKEFTSVDEIKAFIA-DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST 103 (216)
Q Consensus 29 ~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~ 103 (216)
.+..+ +.+++++.+. .+++++|.||.+||. ...+.|.++|.++ +.+.|+ .+| +..
T Consensus 2 ~v~~l-~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~--------------~vd-----~~~ 61 (104)
T cd03004 2 SVITL-TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVG--------------SVD-----CQK 61 (104)
T ss_pred cceEc-CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEE--------------EEE-----CCc
Confidence 45566 4678888764 567899999999984 5678999999988 567888 566 777
Q ss_pred cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCC-HHHHHHHH
Q psy7942 104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASD-EAALRKFL 145 (216)
Q Consensus 104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~-~~~l~~fi 145 (216)
++++++++++.. |++++|++..+....|.|.. + .++|.+||
T Consensus 62 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~-~~~~~l~~~i 104 (104)
T cd03004 62 YESLCQQANIRAYPTIRLYPGNASKYHSYNGWH-RDADSILEFI 104 (104)
T ss_pred hHHHHHHcCCCcccEEEEEcCCCCCceEccCCC-CCHHHHHhhC
Confidence 889999999986 99999997645678899988 6 89999986
No 21
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.89 E-value=2.4e-08 Score=73.24 Aligned_cols=95 Identities=24% Similarity=0.442 Sum_probs=76.5
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-------CCceEEecchhhHHHHhhhhcccccee
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-------DDLVFDASSELAKTFNEIASKVDDLVF 99 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-------~~~~F~~~~~~~~~~~~~~~~~~~~~~ 99 (216)
+..++ .++++..++.++.++|.|+.+|| ....+.|.++|..+ +.+.|+ .+|
T Consensus 3 v~~l~-~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~--------------~vd---- 63 (108)
T cd02996 3 IVSLT-SGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWG--------------KVD---- 63 (108)
T ss_pred eEEcC-HhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEE--------------EEE----
Confidence 45564 57899999889999999999997 45567888888764 136777 566
Q ss_pred eecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942 100 VTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 100 ~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi 145 (216)
+..+++++++|++.. |++++|++.......|.|.. +.++|.+||
T Consensus 64 -~d~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~-~~~~l~~fi 108 (108)
T cd02996 64 -CDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQR-SVEALAEFV 108 (108)
T ss_pred -CCCCHHHHHhCCCCcCCEEEEEeCCcCcceecCCCC-CHHHHHhhC
Confidence 777889999999986 99999997554457899998 999999996
No 22
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.75 E-value=1.4e-07 Score=67.99 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=75.0
Q ss_pred ceeecCHHHHHHhHhC-CCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942 30 AKEFTSVDEIKAFIAD-SKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN 104 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~ 104 (216)
+..+ +.+++++.+.+ +.+++|.|+.+||. ...+.|.++|.++ +.+.|+ .+| ...+
T Consensus 2 v~~l-~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~--------------~id-----~~~~ 61 (103)
T cd03001 2 VVEL-TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVG--------------AVD-----ADVH 61 (103)
T ss_pred eEEc-CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEE--------------EEE-----Ccch
Confidence 3455 45788887754 55689999999984 5567899999887 567777 455 5667
Q ss_pred HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942 105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi 145 (216)
+++++++++.. |++++|++.......|.|+. +.+.|.+|+
T Consensus 62 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~-~~~~l~~~~ 102 (103)
T cd03001 62 QSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGR-TAKAIVSAA 102 (103)
T ss_pred HHHHHHCCCCccCEEEEECCCCcceeecCCCC-CHHHHHHHh
Confidence 88999999987 99999997645677899999 999999997
No 23
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.69 E-value=2.6e-07 Score=67.42 Aligned_cols=96 Identities=16% Similarity=0.303 Sum_probs=72.9
Q ss_pred ceeecCHHHHHHhHhC-CCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc-
Q psy7942 30 AKEFTSVDEIKAFIAD-SKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST- 103 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~- 103 (216)
+..++ .++++..+.+ +.+++|.|+.+||. ...+.|.++|+.+ +.+.|+ .++ +..
T Consensus 2 v~~l~-~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~--------------~v~-----~~~~ 61 (109)
T cd03002 2 VYELT-PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVA--------------AVD-----CDED 61 (109)
T ss_pred eEEcc-hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEE--------------EEe-----cCcc
Confidence 34554 4678887754 66699999999984 4567899999888 456666 343 444
Q ss_pred -cHHHHHhcCCCC-CeEEEEecCC----CCcccccCCCCCHHHHHHHHh
Q psy7942 104 -NADILAEYSVDD-DTVAIFKKFD----EGRVNYEGPASDEAALRKFLS 146 (216)
Q Consensus 104 -~~~v~~~~~v~~-p~i~~~~~~d----e~~~~y~G~~~~~~~l~~fi~ 146 (216)
+++++++|++.. |++++|++.. .....|.|+. +.+.|.+||.
T Consensus 62 ~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~-~~~~l~~fi~ 109 (109)
T cd03002 62 KNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGER-SAKAIVDFVL 109 (109)
T ss_pred ccHHHHHHcCCCcCCEEEEEeCCCcccccccccccCcc-CHHHHHHHhC
Confidence 678899999986 9999999764 2356799999 9999999984
No 24
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.68 E-value=2.2e-07 Score=70.03 Aligned_cols=95 Identities=19% Similarity=0.331 Sum_probs=71.3
Q ss_pred ceeecCHHHHHHhHhCCC-eEEEEEecCCChh-------HHHHHHHHHhhC---CCceEEecchhhHHHHhhhhccccce
Q psy7942 30 AKEFTSVDEIKAFIADSK-VVVAGLFKDASSE-------LAKTFNEIASKV---DDLVFDASSELAKTFNEIASKVDDLV 98 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~-v~~V~f~~~~~~~-------~~~~f~~~A~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~ 98 (216)
+..|+ .+++++.+.+++ ++++.|.+.|+.+ ..+.+.++|..+ ..+.|+ +||
T Consensus 11 v~~lt-~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~--------------kVD--- 72 (120)
T cd03065 11 VIDLN-EKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFG--------------LVD--- 72 (120)
T ss_pred eeeCC-hhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEE--------------EEe---
Confidence 45565 589998887666 5555555556533 234556777665 578898 787
Q ss_pred eeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942 99 FVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 99 ~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
++.+++++++|++.+ ||+++|+++. .+.|.|.. +.+.|.+||.+
T Consensus 73 --~d~~~~La~~~~I~~iPTl~lfk~G~--~v~~~G~~-~~~~l~~~l~~ 117 (120)
T cd03065 73 --SKKDAKVAKKLGLDEEDSIYVFKDDE--VIEYDGEF-AADTLVEFLLD 117 (120)
T ss_pred --CCCCHHHHHHcCCccccEEEEEECCE--EEEeeCCC-CHHHHHHHHHH
Confidence 888999999999987 9999999643 45599999 99999999975
No 25
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.68 E-value=2.7e-07 Score=66.08 Aligned_cols=92 Identities=23% Similarity=0.455 Sum_probs=74.5
Q ss_pred HHHHHHhHhCCCeEEEEEecCCChhH---HHHHHHHHhhCC---CceEEecchhhHHHHhhhhccccceeeecccHHHHH
Q psy7942 36 VDEIKAFIADSKVVVAGLFKDASSEL---AKTFNEIASKVD---DLVFDASSELAKTFNEIASKVDDLVFVTSTNADILA 109 (216)
Q Consensus 36 ~~~~~~~~~~~~v~~V~f~~~~~~~~---~~~f~~~A~~~~---~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~ 109 (216)
.+++++++.++++++|.|+.+||... .+.|.++|..+. .+.|+ .+| +..++++++
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~--------------~~d-----~~~~~~~~~ 63 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLA--------------KVD-----ATAEKDLAS 63 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEE--------------EEE-----ccchHHHHH
Confidence 46788888889999999999998433 467888888873 47777 455 667788999
Q ss_pred hcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 110 EYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 110 ~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
+|++.. |++++|++... ...|.|.. +.+.|..||.++
T Consensus 64 ~~~i~~~P~~~~~~~~~~-~~~~~g~~-~~~~l~~~i~~~ 101 (102)
T TIGR01126 64 RFGVSGFPTIKFFPKGKK-PVDYEGGR-DLEAIVEFVNEK 101 (102)
T ss_pred hCCCCcCCEEEEecCCCc-ceeecCCC-CHHHHHHHHHhc
Confidence 999986 99999997544 67899998 899999999875
No 26
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.67 E-value=3.9e-07 Score=79.08 Aligned_cols=151 Identities=19% Similarity=0.292 Sum_probs=102.2
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCCC--hhHH------HHHHHHHhhC---CCceEEecchhhHHHHhhhhccccce
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS--SELA------KTFNEIASKV---DDLVFDASSELAKTFNEIASKVDDLV 98 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~--~~~~------~~f~~~A~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~ 98 (216)
|..|+ ..++.++++..++.+|+|+.+-. +... +.+.++|.+. ..+.|| .||
T Consensus 36 Vi~Ln-eKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg--------------~VD--- 97 (383)
T PF01216_consen 36 VIDLN-EKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFG--------------MVD--- 97 (383)
T ss_dssp CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEE--------------EEE---
T ss_pred eEEcc-hhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceE--------------Eec---
Confidence 45564 57899999999999999987743 2221 3456776654 688999 455
Q ss_pred eeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchHHHhhcc-CCcceEEEE
Q psy7942 99 FVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGG-EIKSHLLVF 176 (216)
Q Consensus 99 ~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~-~~~~~lllf 176 (216)
...+..+++++|+.. ++|.+|+ +++.+.|+|.+ +++.|..||....-..|..++.+.-.+.|+. .-.+-++.+
T Consensus 98 --~~Kd~klAKKLgv~E~~SiyVfk--d~~~IEydG~~-saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGy 172 (383)
T PF01216_consen 98 --SKKDAKLAKKLGVEEEGSIYVFK--DGEVIEYDGER-SADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGY 172 (383)
T ss_dssp --TTTTHHHHHHHT--STTEEEEEE--TTEEEEE-S---SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE
T ss_pred --cHHHHHHHHhcCccccCcEEEEE--CCcEEEecCcc-CHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEE
Confidence 778889999999986 9999999 46789999999 9999999999987777888887654444442 101335566
Q ss_pred EeCCccchhhhhHHHHHHHHhccCceEEEE
Q psy7942 177 FSKAAGHYESHFEPVQTVAKDFREKEEQDE 206 (216)
Q Consensus 177 ~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~ 206 (216)
+.... ....+.+..+|.+|+.-+.|.-
T Consensus 173 Fk~~~---s~~yk~FeeAAe~F~p~IkFfA 199 (383)
T PF01216_consen 173 FKSED---SEHYKEFEEAAEHFQPYIKFFA 199 (383)
T ss_dssp -SSTT---SHHHHHHHHHHHHCTTTSEEEE
T ss_pred eCCCC---cHHHHHHHHHHHhhcCceeEEE
Confidence 65432 3356888999999998887753
No 27
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.66 E-value=1.6e-07 Score=68.36 Aligned_cols=90 Identities=19% Similarity=0.327 Sum_probs=70.2
Q ss_pred ecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec-ccHHHH
Q psy7942 33 FTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS-TNADIL 108 (216)
Q Consensus 33 l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t-~~~~v~ 108 (216)
+++..++.... .+++++|.|+++|| ....+.|.++|+.+..+.|. .+| .. .+++++
T Consensus 6 ~~~~~~~~~~~-~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~--------------~vd-----~~~~~~~l~ 65 (100)
T cd02999 6 LNIALDLMAFN-REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHL--------------AIE-----ESSIKPSLL 65 (100)
T ss_pred hhHHHHHHHhc-CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceE--------------EEE-----CCCCCHHHH
Confidence 44444444432 58889999999997 45578999999988767776 455 44 568899
Q ss_pred HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942 109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 109 ~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi 145 (216)
++|++.. ||+++|++. ....|.|.. +.+.|.+||
T Consensus 66 ~~~~V~~~PT~~lf~~g--~~~~~~G~~-~~~~l~~f~ 100 (100)
T cd02999 66 SRYGVVGFPTILLFNST--PRVRYNGTR-TLDSLAAFY 100 (100)
T ss_pred HhcCCeecCEEEEEcCC--ceeEecCCC-CHHHHHhhC
Confidence 9999986 999999975 567899998 999999996
No 28
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.64 E-value=1.2e-06 Score=69.46 Aligned_cols=123 Identities=21% Similarity=0.299 Sum_probs=91.2
Q ss_pred CCCcccCCCC-CChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCe-EEEEEecCCC----hhHHHHHHHHHhhC-CCc
Q psy7942 3 SCLPGERRGG-RTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKV-VVAGLFKDAS----SELAKTFNEIASKV-DDL 75 (216)
Q Consensus 3 ~g~~~~Y~G~-Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v-~~V~f~~~~~----~~~~~~f~~~A~~~-~~~ 75 (216)
++.+..|.|. .+.++|..|+....-|.+..++. +.+..+...... +++.|. +.+ ....+.+.++|+++ +.+
T Consensus 51 ~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~-~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~ 128 (184)
T PF13848_consen 51 DEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTP-ENFEKLFSSPKPPVLILFD-NKDNESTEAFKKELQDIAKKFKGKI 128 (184)
T ss_dssp TTSEEEESSSTTSHHHHHHHHHHHSSTSCEEEST-THHHHHHSTSSEEEEEEEE-TTTHHHHHHHHHHHHHHHHCTTTTS
T ss_pred CCCceecccccCCHHHHHHHHHHhccccccccch-hhHHHHhcCCCceEEEEEE-cCCchhHHHHHHHHHHHHHhcCCeE
Confidence 3567899998 89999999999999999999974 688888887654 555554 332 34456778889888 678
Q ss_pred eEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCC---CCeEEEEecCCCCc-ccccCCCCCHHHHHHHHhh
Q psy7942 76 VFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVD---DDTVAIFKKFDEGR-VNYEGPASDEAALRKFLST 147 (216)
Q Consensus 76 ~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~---~p~i~~~~~~de~~-~~y~G~~~~~~~l~~fi~~ 147 (216)
.|.+ +| ....+.+++.++++ .|+++++....... ..+.|++ +.+.|.+|+.+
T Consensus 129 ~f~~--------------~d-----~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~-~~~~i~~Fl~d 184 (184)
T PF13848_consen 129 NFVY--------------VD-----ADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEI-TPESIEKFLND 184 (184)
T ss_dssp EEEE--------------EE-----TTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCG-CHHHHHHHHHH
T ss_pred EEEE--------------ee-----hHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCC-CHHHHHHHhcC
Confidence 8872 33 34456788899987 39999999544322 2247888 99999999964
No 29
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.62 E-value=5.9e-07 Score=63.52 Aligned_cols=91 Identities=29% Similarity=0.513 Sum_probs=72.9
Q ss_pred CHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC---CCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942 35 SVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV---DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL 108 (216)
Q Consensus 35 s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~ 108 (216)
+.+++++.+.+.+.++|.|+.++| ....+.|.+++..+ +.+.|+ .++ +..++.++
T Consensus 4 ~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~--------------~v~-----~~~~~~~~ 64 (101)
T cd02961 4 TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVA--------------KVD-----CTANNDLC 64 (101)
T ss_pred cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEE--------------Eee-----ccchHHHH
Confidence 357889999888899999999987 45566888888777 567787 444 55568899
Q ss_pred HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942 109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 109 ~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi 145 (216)
++|+++. |++++|++.......|.|.. +.+.|.+|+
T Consensus 65 ~~~~i~~~Pt~~~~~~~~~~~~~~~g~~-~~~~i~~~~ 101 (101)
T cd02961 65 SEYGVRGYPTIKLFPNGSKEPVKYEGPR-TLESLVEFI 101 (101)
T ss_pred HhCCCCCCCEEEEEcCCCcccccCCCCc-CHHHHHhhC
Confidence 9999987 99999997534577899998 999999885
No 30
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.60 E-value=1.2e-06 Score=65.13 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=76.2
Q ss_pred CceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942 29 PAKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNA 105 (216)
Q Consensus 29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 105 (216)
.+..|++.+++++.+++++.++|.||.+|| ....+.+.++|+.+.++.|. .|| ...++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~--------------~Vd-----~~~~~ 65 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFI--------------KVN-----AEKAP 65 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEE--------------EEE-----cccCH
Confidence 356788889999999989999999999987 34567888999888778888 676 77788
Q ss_pred HHHHhcCCCC-CeEEEEecCCCC-----ccccc--CCCCCHHHHHHHH
Q psy7942 106 DILAEYSVDD-DTVAIFKKFDEG-----RVNYE--GPASDEAALRKFL 145 (216)
Q Consensus 106 ~v~~~~~v~~-p~i~~~~~~de~-----~~~y~--G~~~~~~~l~~fi 145 (216)
+++++|++.. |++++|+++..- ..... +++ +.++|++|+
T Consensus 66 ~l~~~~~v~~vPt~l~fk~G~~v~~~~g~~~~~~~~~~-~~~~~e~~~ 112 (113)
T cd02989 66 FLVEKLNIKVLPTVILFKNGKTVDRIVGFEELGGKDDF-STETLEKRL 112 (113)
T ss_pred HHHHHCCCccCCEEEEEECCEEEEEEECccccCCCCCC-CHHHHHHHh
Confidence 8999999986 999999975321 01122 355 888999886
No 31
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.59 E-value=2.3e-06 Score=70.62 Aligned_cols=145 Identities=12% Similarity=0.133 Sum_probs=99.0
Q ss_pred CCCeEEEEEec---CCC---hhHHHHHHHHHhhCCCce--EEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-
Q psy7942 45 DSKVVVAGLFK---DAS---SELAKTFNEIASKVDDLV--FDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD- 115 (216)
Q Consensus 45 ~~~v~~V~f~~---~~~---~~~~~~f~~~A~~~~~~~--F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~- 115 (216)
.+++.++.|+. +|| ....+.+.++|..++.+. +. .+| ...+++++++|++..
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v--------------~vd-----~~~~~~l~~~~~V~~~ 78 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIY--------------DFD-----TPEDKEEAEKYGVERV 78 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEE--------------ecC-----CcccHHHHHHcCCCcc
Confidence 35666666777 665 566778888888885543 44 233 336789999999986
Q ss_pred CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc--CCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHH
Q psy7942 116 DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ--SLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQT 193 (216)
Q Consensus 116 p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~--~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~ 193 (216)
||+++|+++......|.|.. ..+.+.+||... .-+.-..+++.+...+-....+..+.+|...+.+..+.....+++
T Consensus 79 Pt~~~f~~g~~~~~~~~G~~-~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~ 157 (215)
T TIGR02187 79 PTTIILEEGKDGGIRYTGIP-AGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHK 157 (215)
T ss_pred CEEEEEeCCeeeEEEEeecC-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHH
Confidence 99999997543234688987 778888888765 222234555555444433332344556888888888888888888
Q ss_pred HHHhccCceEEEEcCCC
Q psy7942 194 VAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 194 vA~~~r~~~~f~~~d~~ 210 (216)
++.++ +++.+..+|..
T Consensus 158 l~~~~-~~i~~~~vD~~ 173 (215)
T TIGR02187 158 FALAN-DKILGEMIEAN 173 (215)
T ss_pred HHHhc-CceEEEEEeCC
Confidence 88885 57887777754
No 32
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.57 E-value=9.9e-07 Score=63.62 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=72.6
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDLVFVTSTN 104 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~ 104 (216)
|..|+ .+++++.+++. .+|.|+.+|| ....+.|.++|..+. .+.|+ .+| +..+
T Consensus 3 v~~l~-~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~--------------~vd-----~~~~ 60 (101)
T cd02994 3 VVELT-DSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVA--------------KVD-----VTQE 60 (101)
T ss_pred eEEcC-hhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEE--------------EEE-----ccCC
Confidence 55664 57888887543 6799999997 456778999998763 56777 566 6677
Q ss_pred HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942 105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
+.++++|++.. |++++|+++ ....|.|.. +.++|.+||.+
T Consensus 61 ~~~~~~~~i~~~Pt~~~~~~g--~~~~~~G~~-~~~~l~~~i~~ 101 (101)
T cd02994 61 PGLSGRFFVTALPTIYHAKDG--VFRRYQGPR-DKEDLISFIEE 101 (101)
T ss_pred HhHHHHcCCcccCEEEEeCCC--CEEEecCCC-CHHHHHHHHhC
Confidence 88999999986 999999863 346789998 99999999863
No 33
>KOG0191|consensus
Probab=98.53 E-value=2.6e-06 Score=76.24 Aligned_cols=152 Identities=18% Similarity=0.331 Sum_probs=113.6
Q ss_pred HHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcC
Q psy7942 37 DEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYS 112 (216)
Q Consensus 37 ~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~ 112 (216)
......+..+...+|-||.+|| ..+..+|.++++.+ ..+.++ .+| ++.+++++++|+
T Consensus 38 ~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~--------------~vd-----~~~~~~~~~~y~ 98 (383)
T KOG0191|consen 38 SFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIG--------------AVD-----CDEHKDLCEKYG 98 (383)
T ss_pred ccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEE--------------EeC-----chhhHHHHHhcC
Confidence 3334566678899999999987 46677999999888 446777 577 889999999999
Q ss_pred CCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC-------CCc-eeeeCcchHHHhhccCCcceEEEEEeCCccc
Q psy7942 113 VDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS-------LPL-VVEFNHETAQKIFGGEIKSHLLVFFSKAAGH 183 (216)
Q Consensus 113 v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~-------~P~-v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~ 183 (216)
+.+ |++.+|++. .....|.|.. +.+.+..|+.... .+. +.+++..++..+-......-++.|+.+...+
T Consensus 99 i~gfPtl~~f~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ 176 (383)
T KOG0191|consen 99 IQGFPTLKVFRPG-KKPIDYSGPR-NAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGH 176 (383)
T ss_pred CccCcEEEEEcCC-CceeeccCcc-cHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHH
Confidence 997 999999986 5678899987 9999999998764 344 5566666665433322123355577777777
Q ss_pred hhhhhHHHHHHHHhcc--CceEEEEcCC
Q psy7942 184 YESHFEPVQTVAKDFR--EKEEQDEDDD 209 (216)
Q Consensus 184 ~~~~~~~l~~vA~~~r--~~~~f~~~d~ 209 (216)
...+...+.++|+.+. +.+...-.|.
T Consensus 177 ck~l~~~~~~~a~~~~~~~~v~~~~~d~ 204 (383)
T KOG0191|consen 177 CKKLAPEWEKLAKLLKSKENVELGKIDA 204 (383)
T ss_pred hhhcChHHHHHHHHhccCcceEEEeecc
Confidence 8888899999999886 4455555553
No 34
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.53 E-value=1.1e-06 Score=63.24 Aligned_cols=94 Identities=28% Similarity=0.463 Sum_probs=70.6
Q ss_pred ceeecCHHHHHHhHhC-CCeEEEEEecCCCh---hHHHHHHHHHhhCC---CceEEecchhhHHHHhhhhccccceeeec
Q psy7942 30 AKEFTSVDEIKAFIAD-SKVVVAGLFKDASS---ELAKTFNEIASKVD---DLVFDASSELAKTFNEIASKVDDLVFVTS 102 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~~---~~~F~~~~~~~~~~~~~~~~~~~~~~~~t 102 (216)
|..|+ .+++++.+.+ ++.++|.|+.+||. ...+.|.+++..+. .+.|+ .+| +.
T Consensus 2 v~~l~-~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~--------------~id-----~~ 61 (104)
T cd02995 2 VKVVV-GKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIA--------------KMD-----AT 61 (104)
T ss_pred eEEEc-hhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEE--------------EEe-----Cc
Confidence 55665 4688887654 57889999999974 55679999998873 46777 454 44
Q ss_pred ccHHHHHhcCCCC-CeEEEEecCC-CCcccccCCCCCHHHHHHHH
Q psy7942 103 TNADILAEYSVDD-DTVAIFKKFD-EGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 103 ~~~~v~~~~~v~~-p~i~~~~~~d-e~~~~y~G~~~~~~~l~~fi 145 (216)
.+ +++..+++.. |++++|++.. .....|.|.. +...|.+||
T Consensus 62 ~~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~-~~~~l~~fi 104 (104)
T cd02995 62 AN-DVPSEFVVDGFPTILFFPAGDKSNPIKYEGDR-TLEDLIKFI 104 (104)
T ss_pred ch-hhhhhccCCCCCEEEEEcCCCcCCceEccCCc-CHHHHHhhC
Confidence 44 5777788765 9999999765 3466799999 999999996
No 35
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.52 E-value=8.8e-07 Score=63.62 Aligned_cols=92 Identities=26% Similarity=0.433 Sum_probs=71.3
Q ss_pred eeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-C---CceEEecchhhHHHHhhhhccccceeeecc
Q psy7942 31 KEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-D---DLVFDASSELAKTFNEIASKVDDLVFVTST 103 (216)
Q Consensus 31 ~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~---~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~ 103 (216)
..++ .++++..+.+. .++|.|+.+||. ...+.|.++|+++ + .+.|+ .+| +..
T Consensus 3 ~~l~-~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~--------------~vd-----~~~ 61 (102)
T cd03005 3 LELT-EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIA--------------KVD-----CTQ 61 (102)
T ss_pred eECC-HHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEE--------------EEE-----CCC
Confidence 4554 57888888766 488889999974 4456888898887 3 46777 455 677
Q ss_pred cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942 104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi 145 (216)
+.++++++++.. |++++|++.. ....|.|.. +.+.|.+||
T Consensus 62 ~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~-~~~~l~~~i 102 (102)
T cd03005 62 HRELCSEFQVRGYPTLLLFKDGE-KVDKYKGTR-DLDSLKEFV 102 (102)
T ss_pred ChhhHhhcCCCcCCEEEEEeCCC-eeeEeeCCC-CHHHHHhhC
Confidence 788999999986 9999998643 356799998 899999986
No 36
>KOG4277|consensus
Probab=98.52 E-value=8.1e-07 Score=75.94 Aligned_cols=131 Identities=16% Similarity=0.368 Sum_probs=93.5
Q ss_pred HhHh--CCCeEEEEEecCCC---hhHHHHHHHHHhhCC----CceEEecchhhHHHHhhhhccccceeeecccHHHHHhc
Q psy7942 41 AFIA--DSKVVVAGLFKDAS---SELAKTFNEIASKVD----DLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEY 111 (216)
Q Consensus 41 ~~~~--~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~----~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~ 111 (216)
+|+. +.++.+|-||++|| ..+.+.+.++...+. -+..| ++| +|.=+.++.++
T Consensus 36 kFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVG--------------KlD-----aT~f~aiAnef 96 (468)
T KOG4277|consen 36 KFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVG--------------KLD-----ATRFPAIANEF 96 (468)
T ss_pred HhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeec--------------ccc-----cccchhhHhhh
Confidence 4554 57899999999997 455567777776652 23445 566 88888999999
Q ss_pred CCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchHH-HhhccCCcceEEEEEeCCccchhhhhH
Q psy7942 112 SVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQ-KIFGGEIKSHLLVFFSKAAGHYESHFE 189 (216)
Q Consensus 112 ~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~-~~~~~~~~~~lllf~~~~~~~~~~~~~ 189 (216)
++++ |+|.+||. +....|.|++ +.++|..|....+-|++..+++.... .-+.... .+.++|+..+. ..+.+
T Consensus 97 giqGYPTIk~~kg--d~a~dYRG~R-~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rh-q~ffVf~Gtge---~PL~d 169 (468)
T KOG4277|consen 97 GIQGYPTIKFFKG--DHAIDYRGGR-EKDAIIEFAHRCAAAIIEPINENQIEFEHLQARH-QPFFVFFGTGE---GPLFD 169 (468)
T ss_pred ccCCCceEEEecC--CeeeecCCCc-cHHHHHHHHHhcccceeeecChhHHHHHHHhhcc-CceEEEEeCCC---CcHHH
Confidence 9998 99999995 5578899999 99999999999999999999984322 2233332 24566665442 23344
Q ss_pred HHHHHHHh
Q psy7942 190 PVQTVAKD 197 (216)
Q Consensus 190 ~l~~vA~~ 197 (216)
.+..+|.+
T Consensus 170 ~fidAASe 177 (468)
T KOG4277|consen 170 AFIDAASE 177 (468)
T ss_pred HHHHHhhh
Confidence 45555543
No 37
>PRK10996 thioredoxin 2; Provisional
Probab=98.50 E-value=1.7e-06 Score=66.69 Aligned_cols=93 Identities=19% Similarity=0.343 Sum_probs=75.0
Q ss_pred CHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHh
Q psy7942 35 SVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAE 110 (216)
Q Consensus 35 s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~ 110 (216)
+.++++.+++++++++|.|+.+|+. ...+.|.+++..+ +.+.|+ .+| ...+++++++
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~--------------~vd-----~~~~~~l~~~ 101 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFV--------------KVN-----TEAERELSAR 101 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEE--------------EEe-----CCCCHHHHHh
Confidence 5788999998899999999999984 4557899999887 567777 455 5667889999
Q ss_pred cCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 111 YSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 111 ~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
|++.+ |++++|+++ +....+.|.. +.+.|.+|+...
T Consensus 102 ~~V~~~Ptlii~~~G-~~v~~~~G~~-~~e~l~~~l~~~ 138 (139)
T PRK10996 102 FRIRSIPTIMIFKNG-QVVDMLNGAV-PKAPFDSWLNEA 138 (139)
T ss_pred cCCCccCEEEEEECC-EEEEEEcCCC-CHHHHHHHHHHh
Confidence 99987 999999853 3344568888 899999999864
No 38
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.50 E-value=1.5e-06 Score=63.88 Aligned_cols=95 Identities=17% Similarity=0.316 Sum_probs=70.6
Q ss_pred ceeecCHHHHHHhHh---CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccceeee
Q psy7942 30 AKEFTSVDEIKAFIA---DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDLVFVT 101 (216)
Q Consensus 30 v~~l~s~~~~~~~~~---~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..++ .++++.+.. ++++++|.|+.+||. .+.+.|.++|..+. .+.|+ .|+ +
T Consensus 3 v~~~~-~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~--------------~vd-----~ 62 (109)
T cd02993 3 VVTLS-RAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVA--------------KFN-----A 62 (109)
T ss_pred ceecc-HHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEE--------------EEE-----C
Confidence 45554 468887763 468999999999974 55678999998883 47777 344 4
Q ss_pred cc-cHHHHH-hcCCCC-CeEEEEecCCCCcccccCC-CCCHHHHHHHH
Q psy7942 102 ST-NADILA-EYSVDD-DTVAIFKKFDEGRVNYEGP-ASDEAALRKFL 145 (216)
Q Consensus 102 t~-~~~v~~-~~~v~~-p~i~~~~~~de~~~~y~G~-~~~~~~l~~fi 145 (216)
.. +..++. .+++.. |++++|++.......|.|+ . +.++|.+||
T Consensus 63 d~~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~-~~~~l~~f~ 109 (109)
T cd02993 63 DGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQR-DVDSLLMFV 109 (109)
T ss_pred CccchhhHHhhcCCCcCCEEEEEcCCCCCceeccCCCC-CHHHHHhhC
Confidence 44 455665 589976 9999999755557789995 6 999999996
No 39
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.44 E-value=1.9e-06 Score=62.00 Aligned_cols=94 Identities=30% Similarity=0.470 Sum_probs=72.1
Q ss_pred eeecCHHHHHHhHhC-CCeEEEEEecCCCh---hHHHHHHHHHhhCC---CceEEecchhhHHHHhhhhccccceeeecc
Q psy7942 31 KEFTSVDEIKAFIAD-SKVVVAGLFKDASS---ELAKTFNEIASKVD---DLVFDASSELAKTFNEIASKVDDLVFVTST 103 (216)
Q Consensus 31 ~~l~s~~~~~~~~~~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~~---~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~ 103 (216)
..+++ ++++..+.+ ++.++|.|+.+||. ...+.|.+++..+. .+.|+ .+| +..
T Consensus 3 ~~l~~-~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~--------------~id-----~~~ 62 (105)
T cd02998 3 VELTD-SNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIA--------------KVD-----ADE 62 (105)
T ss_pred EEcch-hcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEE--------------EEE-----CCC
Confidence 34543 677777765 44889999999984 44578888888863 46676 455 556
Q ss_pred -cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942 104 -NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 104 -~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi 145 (216)
++++++++++.. |++++|++.......|.|.. +.+.|.+||
T Consensus 63 ~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~-~~~~l~~~i 105 (105)
T cd02998 63 ANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGR-DLEDLVKFV 105 (105)
T ss_pred cchhhHHhCCCCCcCEEEEEeCCCCCccccCCcc-CHHHHHhhC
Confidence 688999999986 99999997655677899998 999999986
No 40
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.44 E-value=2.1e-06 Score=61.18 Aligned_cols=88 Identities=22% Similarity=0.372 Sum_probs=67.6
Q ss_pred HHHHhH-hC-CCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhc
Q psy7942 38 EIKAFI-AD-SKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEY 111 (216)
Q Consensus 38 ~~~~~~-~~-~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~ 111 (216)
++++.+ ++ .++++|.|+.+|| ....+.+.+++..+ +.+.|+ .+| ...+++++++|
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~--------------~vd-----~~~~~~l~~~~ 62 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLA--------------KVN-----CDAQPQIAQQF 62 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEE--------------EEe-----ccCCHHHHHHc
Confidence 345555 34 5799999999997 45567888889888 456676 566 77788999999
Q ss_pred CCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942 112 SVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS 146 (216)
Q Consensus 112 ~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~ 146 (216)
++.. |++++|+++ .....|.|.. +.+.|..||.
T Consensus 63 ~i~~~Pt~~~~~~g-~~~~~~~g~~-~~~~l~~~l~ 96 (96)
T cd02956 63 GVQALPTVYLFAAG-QPVDGFQGAQ-PEEQLRQMLD 96 (96)
T ss_pred CCCCCCEEEEEeCC-EEeeeecCCC-CHHHHHHHhC
Confidence 9986 999999853 2345688988 8999999874
No 41
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.42 E-value=2.6e-06 Score=61.29 Aligned_cols=94 Identities=19% Similarity=0.339 Sum_probs=71.4
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC---CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV---DDLVFDASSELAKTFNEIASKVDDLVFVTST 103 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~ 103 (216)
+..++ .++++..+++++.++|.|+++||. ...+.+.+++..+ ..+.|+ .+| +..
T Consensus 2 ~~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~--------------~id-----~~~ 61 (104)
T cd02997 2 VVHLT-DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLA--------------AVD-----CTK 61 (104)
T ss_pred eEEec-hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEE--------------EEE-----CCC
Confidence 34554 468888888888999999999984 4456788888776 235565 344 555
Q ss_pred --cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942 104 --NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 104 --~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi 145 (216)
+..++.++++.. |++++|++.. ....|.|.. +.+.|.+||
T Consensus 62 ~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~-~~~~l~~~l 104 (104)
T cd02997 62 PEHDALKEEYNVKGFPTFKYFENGK-FVEKYEGER-TAEDIIEFM 104 (104)
T ss_pred CccHHHHHhCCCccccEEEEEeCCC-eeEEeCCCC-CHHHHHhhC
Confidence 778899999975 9999999643 356789998 899999886
No 42
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.41 E-value=3.8e-06 Score=59.76 Aligned_cols=93 Identities=23% Similarity=0.345 Sum_probs=71.1
Q ss_pred CHHHHHHhHhC-CCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHH
Q psy7942 35 SVDEIKAFIAD-SKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILA 109 (216)
Q Consensus 35 s~~~~~~~~~~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~ 109 (216)
+.+++...+.+ .+.++|.|+.+||. ...+.|.+++.++ +.+.|+ .+| ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~--------------~vd-----~~~~~~~~~ 62 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFV--------------KLN-----VDENPDIAA 62 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEE--------------EEE-----CCCCHHHHH
Confidence 35678887766 45899999999983 4456888888887 468888 455 667788999
Q ss_pred hcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 110 EYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 110 ~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
+|++.. |++++|+.. .....+.|.. +.+.|.+||..+
T Consensus 63 ~~~v~~~P~~~~~~~g-~~~~~~~g~~-~~~~l~~~l~~~ 100 (101)
T TIGR01068 63 KYGIRSIPTLLLFKNG-KEVDRSVGAL-PKAALKQLINKN 100 (101)
T ss_pred HcCCCcCCEEEEEeCC-cEeeeecCCC-CHHHHHHHHHhh
Confidence 999986 999999853 3344567887 889999999764
No 43
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.40 E-value=4.1e-06 Score=63.96 Aligned_cols=102 Identities=13% Similarity=0.196 Sum_probs=77.7
Q ss_pred CCceeecCHHHHHHhHhCCCeEEEEEecCC---C----hhHHHHHHHHHhhC-CC-ceEEecchhhHHHHhhhhccccce
Q psy7942 28 PPAKEFTSVDEIKAFIADSKVVVAGLFKDA---S----SELAKTFNEIASKV-DD-LVFDASSELAKTFNEIASKVDDLV 98 (216)
Q Consensus 28 ~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~---~----~~~~~~f~~~A~~~-~~-~~F~~~~~~~~~~~~~~~~~~~~~ 98 (216)
|.+.+|++.+.++..+.++.+++|+|+++. + ......|.++|+++ .. +.|.+ +|
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~--------------vd--- 64 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLW--------------TE--- 64 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEE--------------Ee---
Confidence 567889999999999988999999999752 1 34567899999999 56 77872 22
Q ss_pred eeecccHHHHHhcCCC---CCeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942 99 FVTSTNADILAEYSVD---DDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS 149 (216)
Q Consensus 99 ~~~t~~~~v~~~~~v~---~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~ 149 (216)
......+.+.|+++ .|+++++...+.....+.|++ +.++|.+|+....
T Consensus 65 --~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~-t~e~i~~Fv~~~l 115 (130)
T cd02983 65 --AGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSF-SEDGINEFLRELS 115 (130)
T ss_pred --CcccHHHHHHcCCCccCCCEEEEEecccCccccccCcc-CHHHHHHHHHHHH
Confidence 33344588899985 399999987433344478999 9999999998753
No 44
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.40 E-value=4.9e-06 Score=60.46 Aligned_cols=93 Identities=17% Similarity=0.313 Sum_probs=69.4
Q ss_pred eecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942 32 EFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106 (216)
Q Consensus 32 ~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 106 (216)
.+.|.++++.+++++++++|.|+++||. ...+.|.+++..+. .+.|. .++ .. +++
T Consensus 3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~--------------~vd-----~d-~~~ 62 (102)
T cd02948 3 EINNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFA--------------TAE-----AD-TID 62 (102)
T ss_pred EccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEE--------------EEe-----CC-CHH
Confidence 4678999999999999999999999984 44568888888873 35676 333 33 678
Q ss_pred HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942 107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
++++|++.. |++++|+++.. .....| . +...|.+||..
T Consensus 63 ~~~~~~v~~~Pt~~~~~~g~~-~~~~~G-~-~~~~~~~~i~~ 101 (102)
T cd02948 63 TLKRYRGKCEPTFLFYKNGEL-VAVIRG-A-NAPLLNKTITE 101 (102)
T ss_pred HHHHcCCCcCcEEEEEECCEE-EEEEec-C-ChHHHHHHHhh
Confidence 899999986 99999995322 233345 3 66888888864
No 45
>PHA02278 thioredoxin-like protein
Probab=98.38 E-value=4.1e-06 Score=61.40 Aligned_cols=90 Identities=11% Similarity=0.123 Sum_probs=66.5
Q ss_pred cCHHHHHHhHhCCCeEEEEEecCCChh---HHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc----H
Q psy7942 34 TSVDEIKAFIADSKVVVAGLFKDASSE---LAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN----A 105 (216)
Q Consensus 34 ~s~~~~~~~~~~~~v~~V~f~~~~~~~---~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~----~ 105 (216)
++.++++..++++++++|.|+++||++ ..+.|.+++.++ ....|. .++ ...+ +
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~--------------~vd-----vd~~~~d~~ 62 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPIL--------------TLN-----LDAEDVDRE 62 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEE--------------EEE-----CCccccccH
Confidence 567889999988999999999999854 456888888775 345555 232 2222 5
Q ss_pred HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHH
Q psy7942 106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKF 144 (216)
Q Consensus 106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~f 144 (216)
+++++|++.. ||+++|+++. ......|.. +.+.|.+|
T Consensus 63 ~l~~~~~I~~iPT~i~fk~G~-~v~~~~G~~-~~~~l~~~ 100 (103)
T PHA02278 63 KAVKLFDIMSTPVLIGYKDGQ-LVKKYEDQV-TPMQLQEL 100 (103)
T ss_pred HHHHHCCCccccEEEEEECCE-EEEEEeCCC-CHHHHHhh
Confidence 7899999987 9999999642 234567876 77777775
No 46
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.36 E-value=4.3e-06 Score=61.92 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=69.0
Q ss_pred ceeecCHHHHHHhHhCC---CeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942 30 AKEFTSVDEIKAFIADS---KVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST 103 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~---~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~ 103 (216)
+..+++ +++.+.+.+. ..++|.|+.+|| ..+.+.+.++|.++.++.|. .+| ...
T Consensus 6 v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~--------------~vd-----~~~ 65 (113)
T cd02957 6 VREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFV--------------KIN-----AEK 65 (113)
T ss_pred EEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEE--------------EEE-----chh
Confidence 556776 7888877655 789999999997 45678999999999778887 455 444
Q ss_pred cHHHHHhcCCCC-CeEEEEecCCCCcccccC-------CCCCHHHHHHHH
Q psy7942 104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEG-------PASDEAALRKFL 145 (216)
Q Consensus 104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G-------~~~~~~~l~~fi 145 (216)
+ .++++|++.. |++++|+++.. ...+.| ++ +.+.|++|+
T Consensus 66 ~-~l~~~~~i~~~Pt~~~f~~G~~-v~~~~G~~~~~~~~~-~~~~l~~~l 112 (113)
T cd02957 66 A-FLVNYLDIKVLPTLLVYKNGEL-IDNIVGFEELGGDDF-TTEDLEKFL 112 (113)
T ss_pred h-HHHHhcCCCcCCEEEEEECCEE-EEEEecHHHhCCCCC-CHHHHHHHh
Confidence 4 8899999975 99999997432 223333 34 777788775
No 47
>PTZ00051 thioredoxin; Provisional
Probab=98.36 E-value=5.3e-06 Score=59.28 Aligned_cols=91 Identities=19% Similarity=0.328 Sum_probs=69.5
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 106 (216)
+..+++.++++++++.++.++|.|+.+||. ...+.|.+++.++.++.|. .+| ...+++
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~--------------~vd-----~~~~~~ 62 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFV--------------KVD-----VDELSE 62 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEE--------------EEE-----CcchHH
Confidence 567889999999999999999999999984 4456788888888778887 454 555678
Q ss_pred HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHH
Q psy7942 107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALR 142 (216)
Q Consensus 107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~ 142 (216)
++++|++.. |++++|+++ .....+.|. ..++|.
T Consensus 63 ~~~~~~v~~~Pt~~~~~~g-~~~~~~~G~--~~~~~~ 96 (98)
T PTZ00051 63 VAEKENITSMPTFKVFKNG-SVVDTLLGA--NDEALK 96 (98)
T ss_pred HHHHCCCceeeEEEEEeCC-eEEEEEeCC--CHHHhh
Confidence 999999986 999999853 223456664 344443
No 48
>PRK09381 trxA thioredoxin; Provisional
Probab=98.33 E-value=9e-06 Score=59.41 Aligned_cols=98 Identities=18% Similarity=0.340 Sum_probs=74.2
Q ss_pred CceeecCHHHHHH-hHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942 29 PAKEFTSVDEIKA-FIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST 103 (216)
Q Consensus 29 ~v~~l~s~~~~~~-~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~ 103 (216)
.+..++. +++++ +++.++.++|.|+.+||. ...+.|.+++.++ +.+.|+ .+| ...
T Consensus 4 ~v~~~~~-~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~--------------~vd-----~~~ 63 (109)
T PRK09381 4 KIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVA--------------KLN-----IDQ 63 (109)
T ss_pred cceeeCh-hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEE--------------EEE-----CCC
Confidence 3566654 56765 566688899999999974 4567889999988 567777 455 666
Q ss_pred cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
++.++++|++.. |++++|++. .....+.|.. +.+.|..||..+
T Consensus 64 ~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~i~~~ 107 (109)
T PRK09381 64 NPGTAPKYGIRGIPTLLLFKNG-EVAATKVGAL-SKGQLKEFLDAN 107 (109)
T ss_pred ChhHHHhCCCCcCCEEEEEeCC-eEEEEecCCC-CHHHHHHHHHHh
Confidence 788899999986 999999853 2234578888 889999999764
No 49
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.33 E-value=7.7e-06 Score=74.73 Aligned_cols=99 Identities=14% Similarity=0.265 Sum_probs=75.3
Q ss_pred CCceeecCHHHHHHhHh---CCCeEEEEEecCCC---hhHHHHHHHHHhhC-C-CceEEecchhhHHHHhhhhcccccee
Q psy7942 28 PPAKEFTSVDEIKAFIA---DSKVVVAGLFKDAS---SELAKTFNEIASKV-D-DLVFDASSELAKTFNEIASKVDDLVF 99 (216)
Q Consensus 28 ~~v~~l~s~~~~~~~~~---~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~-~~~F~~~~~~~~~~~~~~~~~~~~~~ 99 (216)
+.|..|+ .+++++.++ .+++++|.||.+|| ..+.+.|.++|.++ + .+.|+ .|+
T Consensus 351 ~~Vv~L~-~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~--------------kVd---- 411 (463)
T TIGR00424 351 NNVVSLS-RPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVA--------------KFR---- 411 (463)
T ss_pred CCeEECC-HHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEE--------------EEE----
Confidence 3455665 568998875 68899999999997 45567899999988 3 36777 343
Q ss_pred eecccH-HHH-HhcCCCC-CeEEEEecCCCCccccc-CCCCCHHHHHHHHhh
Q psy7942 100 VTSTNA-DIL-AEYSVDD-DTVAIFKKFDEGRVNYE-GPASDEAALRKFLST 147 (216)
Q Consensus 100 ~~t~~~-~v~-~~~~v~~-p~i~~~~~~de~~~~y~-G~~~~~~~l~~fi~~ 147 (216)
+..++ .++ ++|+|.. |++++|++....+..|. |.. +.++|..||+.
T Consensus 412 -vD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R-~~e~L~~Fv~~ 461 (463)
T TIGR00424 412 -ADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKR-DVDSLMSFVNL 461 (463)
T ss_pred -CCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCCCC-CHHHHHHHHHh
Confidence 44443 344 6899986 99999998765678898 477 99999999975
No 50
>PLN02309 5'-adenylylsulfate reductase
Probab=98.32 E-value=7.4e-06 Score=74.78 Aligned_cols=99 Identities=14% Similarity=0.276 Sum_probs=76.9
Q ss_pred CceeecCHHHHHHhHh---CCCeEEEEEecCCC---hhHHHHHHHHHhhC--CCceEEecchhhHHHHhhhhccccceee
Q psy7942 29 PAKEFTSVDEIKAFIA---DSKVVVAGLFKDAS---SELAKTFNEIASKV--DDLVFDASSELAKTFNEIASKVDDLVFV 100 (216)
Q Consensus 29 ~v~~l~s~~~~~~~~~---~~~v~~V~f~~~~~---~~~~~~f~~~A~~~--~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 100 (216)
.|..|+ .+++++++. .+++++|.||.+|| ..+.+.|.++|.++ ..+.|+ .+|
T Consensus 346 ~Vv~Lt-~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~--------------kVD----- 405 (457)
T PLN02309 346 NVVALS-RAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVA--------------KFR----- 405 (457)
T ss_pred CcEECC-HHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEE--------------EEE-----
Confidence 455564 578888764 68899999999997 45567999999988 347777 454
Q ss_pred ec-ccHHHHH-hcCCCC-CeEEEEecCCCCcccccC-CCCCHHHHHHHHhhc
Q psy7942 101 TS-TNADILA-EYSVDD-DTVAIFKKFDEGRVNYEG-PASDEAALRKFLSTQ 148 (216)
Q Consensus 101 ~t-~~~~v~~-~~~v~~-p~i~~~~~~de~~~~y~G-~~~~~~~l~~fi~~~ 148 (216)
+. .+++++. +|+|.. |+|++|++....+..|.| .. +.++|..||+..
T Consensus 406 ~d~~~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R-~~~~L~~fv~~~ 456 (457)
T PLN02309 406 ADGDQKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKR-DVDSLLSFVNSL 456 (457)
T ss_pred CCCcchHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCc-CHHHHHHHHHHh
Confidence 55 5567775 699986 999999987666788985 67 999999999863
No 51
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.32 E-value=6.8e-06 Score=60.75 Aligned_cols=92 Identities=5% Similarity=0.109 Sum_probs=69.4
Q ss_pred CHHHHHH-hHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942 35 SVDEIKA-FIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106 (216)
Q Consensus 35 s~~~~~~-~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 106 (216)
+.+++++ .+. .+++++|.|+.+||. ...+.|.++++++. .+.|+ .+| +..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~--------------~vd-----~d~~~~ 70 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIA--------------TVN-----AGHERR 70 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEE--------------EEe-----ccccHH
Confidence 3455653 443 578999999999984 44678899999883 57777 455 666788
Q ss_pred HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942 107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
++.++++.. |++++|++. .....+.|.. +.+.|.+||.+
T Consensus 71 l~~~~~V~~~Pt~~i~~~g-~~~~~~~G~~-~~~~l~~~i~~ 110 (111)
T cd02963 71 LARKLGAHSVPAIVGIING-QVTFYHDSSF-TKQHVVDFVRK 110 (111)
T ss_pred HHHHcCCccCCEEEEEECC-EEEEEecCCC-CHHHHHHHHhc
Confidence 999999986 999999853 3334457888 88999999875
No 52
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=98.27 E-value=6.6e-06 Score=58.88 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=61.8
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL 108 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~ 108 (216)
++++.+.+++.. +...+-.+||||.+.+++.++.|..||..+ +++.|.+ .++ . +.
T Consensus 1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v-------------~~G---------~-~~ 56 (91)
T cd03070 1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLV-------------GFG---------D-VT 56 (91)
T ss_pred CceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEE-------------Eec---------c-cc
Confidence 456788888888 677889999999999999999999999998 7887762 111 1 11
Q ss_pred HhcCCCCCeEEEEecC-CCCcccccCCCCCHHH
Q psy7942 109 AEYSVDDDTVAIFKKF-DEGRVNYEGPASDEAA 140 (216)
Q Consensus 109 ~~~~v~~p~i~~~~~~-de~~~~y~G~~~~~~~ 140 (216)
....-.++.+++||+. .+....|.|++++.+.
T Consensus 57 ~~~~~~~~~~i~frp~~~~~~~~y~G~~tn~~~ 89 (91)
T cd03070 57 KPERPPGDNIIYFPPGHNAPDMVYLGSLTNFDL 89 (91)
T ss_pred ccccCCCCCeEEECCCCCCCceEEccCCCChhh
Confidence 1122234677778864 3445789999855443
No 53
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.27 E-value=1.5e-06 Score=64.55 Aligned_cols=57 Identities=21% Similarity=0.120 Sum_probs=49.0
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHh---ccCceEEEEcCCCCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKD---FREKEEQDEDDDQPK 212 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~---~r~~~~f~~~d~~~~ 212 (216)
|+++|.+|+..|++++++.++++| +.++.+.+.+.++++|++ ||++++|+++|....
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f---~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~ 60 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH---DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKF 60 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe---cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh
Confidence 578999999999999987766656 445678999999999999 999999999997654
No 54
>KOG0191|consensus
Probab=98.27 E-value=8.7e-06 Score=72.83 Aligned_cols=128 Identities=18% Similarity=0.347 Sum_probs=94.6
Q ss_pred CCcccCCCCCChHHHHHHHHhhhCCCceeec-------CHHHHHHhH-hCCCeEEEEEecCCCh---hHHHHHHHHHhhC
Q psy7942 4 CLPGERRGGRTAEDIVNWLLKKTGPPAKEFT-------SVDEIKAFI-ADSKVVVAGLFKDASS---ELAKTFNEIASKV 72 (216)
Q Consensus 4 g~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~-------s~~~~~~~~-~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~ 72 (216)
..+.+|.|.++++.+.+|+.+.+.+.+..+. ...++.... ..+...+|.||.+||. .+..+|.++|..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~ 191 (383)
T KOG0191|consen 112 KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLL 191 (383)
T ss_pred CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHh
Confidence 3689999999999999999999987654322 124444443 3577788889999974 4467888988866
Q ss_pred ---CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 73 ---DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 73 ---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
..+..+ .+| ++.+..++.++++.. |++++|++.++....|.|.+ +.++|.+|+...
T Consensus 192 ~~~~~v~~~--------------~~d-----~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R-~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 192 KSKENVELG--------------KID-----ATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLR-DSDSIVSFVEKK 251 (383)
T ss_pred ccCcceEEE--------------eec-----cchHHHHhhhhcccCCceEEEecCCCcccccccccc-cHHHHHHHHHhh
Confidence 344555 344 556778899999986 99999998555234456677 999999999987
Q ss_pred CCC
Q psy7942 149 SLP 151 (216)
Q Consensus 149 ~~P 151 (216)
..+
T Consensus 252 ~~~ 254 (383)
T KOG0191|consen 252 ERR 254 (383)
T ss_pred cCC
Confidence 655
No 55
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.26 E-value=9.3e-06 Score=67.62 Aligned_cols=97 Identities=11% Similarity=0.223 Sum_probs=76.1
Q ss_pred CceeecCHHHHHHhHhC-----CCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhcccccee
Q psy7942 29 PAKEFTSVDEIKAFIAD-----SKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVF 99 (216)
Q Consensus 29 ~v~~l~s~~~~~~~~~~-----~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~ 99 (216)
.+..+ +.+++++++.. .++++|.||.+||. ...+.|.++|+.+ +.+.|+ .+|
T Consensus 31 ~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~--------------~VD---- 91 (224)
T PTZ00443 31 ALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVA--------------DLD---- 91 (224)
T ss_pred CcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEE--------------Eec----
Confidence 35566 46788888753 47899999999984 4567899999988 567787 566
Q ss_pred eecccHHHHHhcCCCC-CeEEEEecCCCCcccc-cCCCCCHHHHHHHHhhc
Q psy7942 100 VTSTNADILAEYSVDD-DTVAIFKKFDEGRVNY-EGPASDEAALRKFLSTQ 148 (216)
Q Consensus 100 ~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y-~G~~~~~~~l~~fi~~~ 148 (216)
++.+++++++|++.. |++++|++. ....| .|.. +.++|.+|+..+
T Consensus 92 -~~~~~~l~~~~~I~~~PTl~~f~~G--~~v~~~~G~~-s~e~L~~fi~~~ 138 (224)
T PTZ00443 92 -ATRALNLAKRFAIKGYPTLLLFDKG--KMYQYEGGDR-STEKLAAFALGD 138 (224)
T ss_pred -CcccHHHHHHcCCCcCCEEEEEECC--EEEEeeCCCC-CHHHHHHHHHHH
Confidence 778889999999986 999999953 34444 5677 999999999776
No 56
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.22 E-value=1.5e-05 Score=57.80 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=65.0
Q ss_pred HHHHHhHhCCCeEEEEEecCCChhHH---HHH---HHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc----cH
Q psy7942 37 DEIKAFIADSKVVVAGLFKDASSELA---KTF---NEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST----NA 105 (216)
Q Consensus 37 ~~~~~~~~~~~v~~V~f~~~~~~~~~---~~f---~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~----~~ 105 (216)
+++++.++++++++|.|+.+||.... ..+ .+++..+ +.+.|. .+| ... .+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~vd-----~~~~~~~~~ 62 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLL--------------RAD-----WTKNDPEIT 62 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEE--------------EEe-----cCCCCHHHH
Confidence 46778888999999999999985433 233 3556666 366666 343 333 46
Q ss_pred HHHHhcCCCC-CeEEEEec-CCCCcccccCCCCCHHHHHHHHh
Q psy7942 106 DILAEYSVDD-DTVAIFKK-FDEGRVNYEGPASDEAALRKFLS 146 (216)
Q Consensus 106 ~v~~~~~v~~-p~i~~~~~-~de~~~~y~G~~~~~~~l~~fi~ 146 (216)
+++++|++.. |++++|++ ..+....+.|.. +.+.|.+||+
T Consensus 63 ~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~-~~~~l~~~l~ 104 (104)
T cd02953 63 ALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFL-TADEFLEALE 104 (104)
T ss_pred HHHHHcCCCCCCEEEEECCCCCCCCccccccc-CHHHHHHHhC
Confidence 7889999986 99999996 334456678888 8899998874
No 57
>KOG0910|consensus
Probab=98.22 E-value=9.8e-06 Score=62.86 Aligned_cols=96 Identities=20% Similarity=0.329 Sum_probs=76.3
Q ss_pred eecCHHHHHH-hHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942 32 EFTSVDEIKA-FIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106 (216)
Q Consensus 32 ~l~s~~~~~~-~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 106 (216)
.+.+.+++++ ++++..+++|-|++.||+ .+.+...+++..+ ..+.|+ .+| ...+.+
T Consensus 46 ~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~--------------kvd-----tD~~~e 106 (150)
T KOG0910|consen 46 NVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLY--------------KVD-----TDEHPE 106 (150)
T ss_pred cccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEE--------------EEc-----cccccc
Confidence 3446777765 667888999999999984 5577899999887 778888 566 667788
Q ss_pred HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
++.+|+|.. |++++|++++. ...+-|-. +.+.|.+||++.
T Consensus 107 la~~Y~I~avPtvlvfknGe~-~d~~vG~~-~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 107 LAEDYEISAVPTVLVFKNGEK-VDRFVGAV-PKEQLRSLIKKF 147 (150)
T ss_pred hHhhcceeeeeEEEEEECCEE-eeeecccC-CHHHHHHHHHHH
Confidence 999999985 99999998543 45677887 888899998763
No 58
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.19 E-value=1.9e-05 Score=57.36 Aligned_cols=89 Identities=19% Similarity=0.406 Sum_probs=67.2
Q ss_pred HHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCC----CceEEecchhhHHHHhhhhccccceeeecccHHHHH
Q psy7942 37 DEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVD----DLVFDASSELAKTFNEIASKVDDLVFVTSTNADILA 109 (216)
Q Consensus 37 ~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~----~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~ 109 (216)
+++++. ..+++++|.|+.+||. ...+.|.+++..+. .+.++ .+| +...+++++
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~--------------~vd-----~~~~~~~~~ 66 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVG--------------KLD-----ATAYSSIAS 66 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEE--------------EEE-----CccCHhHHh
Confidence 566665 4567999999999984 44568888888762 35565 344 556778999
Q ss_pred hcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 110 EYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 110 ~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
++++.. |++++|++ +....|.|.. +.+.|.+|++..
T Consensus 67 ~~~I~~~Pt~~l~~~--~~~~~~~G~~-~~~~l~~~~~~~ 103 (104)
T cd03000 67 EFGVRGYPTIKLLKG--DLAYNYRGPR-TKDDIVEFANRV 103 (104)
T ss_pred hcCCccccEEEEEcC--CCceeecCCC-CHHHHHHHHHhh
Confidence 999986 99999974 3456689998 999999999763
No 59
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.18 E-value=3.2e-05 Score=56.32 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=65.8
Q ss_pred CHHHHHHhHhC--CCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeeccc---HH
Q psy7942 35 SVDEIKAFIAD--SKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTN---AD 106 (216)
Q Consensus 35 s~~~~~~~~~~--~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~---~~ 106 (216)
|.+++++.+.+ +++++|.|+++||. ...+.|.+++..++++.|. .|+ ...+ ++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~--------------~vd-----~d~~~~~~~ 62 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFL--------------LVN-----GDENDSTME 62 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEE--------------EEE-----CCCChHHHH
Confidence 56788888864 78999999999984 4567899999888777787 343 3333 36
Q ss_pred HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942 107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS 146 (216)
Q Consensus 107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~ 146 (216)
++++|++.. |++++|+++. ....+.|. ....|.+-|.
T Consensus 63 l~~~~~V~~~Pt~~~~~~G~-~v~~~~G~--~~~~l~~~~~ 100 (103)
T cd02985 63 LCRREKIIEVPHFLFYKDGE-KIHEEEGI--GPDELIGDVL 100 (103)
T ss_pred HHHHcCCCcCCEEEEEeCCe-EEEEEeCC--CHHHHHHHHH
Confidence 889999986 9999998532 24567775 4566666554
No 60
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.11 E-value=4.9e-05 Score=54.02 Aligned_cols=89 Identities=17% Similarity=0.323 Sum_probs=66.0
Q ss_pred CHHHHHHhHhCC--CeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942 35 SVDEIKAFIADS--KVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL 108 (216)
Q Consensus 35 s~~~~~~~~~~~--~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~ 108 (216)
|.+++++.+.+. +.++|.|+.+|| ....+.|.+++.++ ..+.|. .+| ....++++
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~--------------~vd-----~~~~~~~~ 61 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFL--------------SIE-----AEELPEIS 61 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEE--------------EEc-----cccCHHHH
Confidence 457888888876 999999999998 45567888888884 677777 455 55677899
Q ss_pred HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942 109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 109 ~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi 145 (216)
++|++.. |++++|+++ .....+.|. +.+.|.+.|
T Consensus 62 ~~~~i~~~Pt~~~~~~g-~~~~~~~g~--~~~~l~~~~ 96 (97)
T cd02984 62 EKFEITAVPTFVFFRNG-TIVDRVSGA--DPKELAKKV 96 (97)
T ss_pred HhcCCccccEEEEEECC-EEEEEEeCC--CHHHHHHhh
Confidence 9999986 999999853 222334553 567777765
No 61
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.11 E-value=2.8e-05 Score=53.58 Aligned_cols=88 Identities=26% Similarity=0.391 Sum_probs=65.9
Q ss_pred HHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCC
Q psy7942 38 EIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVD 114 (216)
Q Consensus 38 ~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~ 114 (216)
++++.+..+++++|.|+.++| ....+.+.+++.+.+++.|+ .++ ...++++++.+++.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~--------------~i~-----~~~~~~~~~~~~v~ 62 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFV--------------KVD-----VDENPELAEEYGVR 62 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEE--------------EEE-----CCCChhHHHhcCcc
Confidence 456677777888999999987 45566777777776677776 333 44567899999997
Q ss_pred C-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942 115 D-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS 146 (216)
Q Consensus 115 ~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~ 146 (216)
. |++++|++. +....+.|.. +.+.|.+||.
T Consensus 63 ~~P~~~~~~~g-~~~~~~~g~~-~~~~l~~~i~ 93 (93)
T cd02947 63 SIPTFLFFKNG-KEVDRVVGAD-PKEELEEFLE 93 (93)
T ss_pred cccEEEEEECC-EEEEEEecCC-CHHHHHHHhC
Confidence 6 999999864 3355677877 7889999874
No 62
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.09 E-value=1.8e-05 Score=59.05 Aligned_cols=70 Identities=26% Similarity=0.246 Sum_probs=57.1
Q ss_pred HHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccccceeeecccHHHHH
Q psy7942 36 VDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLVFVTSTNADILA 109 (216)
Q Consensus 36 ~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~ 109 (216)
.+++++.+. .+++++|-|+++||. .+.+.|.++|.++. .+.|. +|| ...++++++
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~--------------kVD-----vD~~~~la~ 62 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIY--------------LVD-----IDEVPDFNK 62 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEE--------------EEE-----CCCCHHHHH
Confidence 467777776 578899999999985 44578999999984 46787 666 677899999
Q ss_pred hcCCCC-CeEEEEecC
Q psy7942 110 EYSVDD-DTVAIFKKF 124 (216)
Q Consensus 110 ~~~v~~-p~i~~~~~~ 124 (216)
+|++.. ||+++|+++
T Consensus 63 ~~~V~~iPTf~~fk~G 78 (114)
T cd02954 63 MYELYDPPTVMFFFRN 78 (114)
T ss_pred HcCCCCCCEEEEEECC
Confidence 999986 999999964
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.09 E-value=5.4e-05 Score=54.43 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=61.6
Q ss_pred CCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCC--C-Ce
Q psy7942 45 DSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVD--D-DT 117 (216)
Q Consensus 45 ~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~--~-p~ 117 (216)
....+++.|+.+++ ....+.|.++|+++ +.+.|+ .+| ....+.+++.+++. . |+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~--------------~vd-----~~~~~~~~~~~~i~~~~~P~ 71 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFV--------------VVD-----ADDFGRHLEYFGLKEEDLPV 71 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEE--------------EEc-----hHhhHHHHHHcCCChhhCCE
Confidence 35677888887776 45677999999999 678888 344 44456789999997 4 99
Q ss_pred EEEEecCCCCccccc-CCCCCHHHHHHHHhh
Q psy7942 118 VAIFKKFDEGRVNYE-GPASDEAALRKFLST 147 (216)
Q Consensus 118 i~~~~~~de~~~~y~-G~~~~~~~l~~fi~~ 147 (216)
+++++..++....+. |.+ +.+.|.+||..
T Consensus 72 ~~~~~~~~~~k~~~~~~~~-~~~~l~~fi~~ 101 (103)
T cd02982 72 IAIINLSDGKKYLMPEEEL-TAESLEEFVED 101 (103)
T ss_pred EEEEecccccccCCCcccc-CHHHHHHHHHh
Confidence 999997433344444 445 88999999975
No 64
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.06 E-value=2.5e-05 Score=58.01 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=72.1
Q ss_pred HHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCC--C---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhh
Q psy7942 18 IVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDA--S---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIA 91 (216)
Q Consensus 18 iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~--~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~ 91 (216)
+|.++....+-+ .+ +..+++++++.+.+++|-|+++| + ....+.|.++|+++ +.+.|+
T Consensus 2 ~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~------------- 65 (111)
T cd02965 2 LVARLQTRHGWP--RV-DAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAA------------- 65 (111)
T ss_pred HhHHHHHhcCCc--cc-ccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEE-------------
Confidence 344454444322 33 45778888888899999999986 3 56678999999999 456777
Q ss_pred hccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHH
Q psy7942 92 SKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALR 142 (216)
Q Consensus 92 ~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~ 142 (216)
.++ ...+++++.+|+|.. ||+++|+++ +....+.|.. +.+.+.
T Consensus 66 -kVd-----id~~~~la~~f~V~sIPTli~fkdG-k~v~~~~G~~-~~~e~~ 109 (111)
T cd02965 66 -VVG-----RADEQALAARFGVLRTPALLFFRDG-RYVGVLAGIR-DWDEYV 109 (111)
T ss_pred -EEE-----CCCCHHHHHHcCCCcCCEEEEEECC-EEEEEEeCcc-CHHHHh
Confidence 455 667789999999986 999999964 2234566766 555543
No 65
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.04 E-value=6e-05 Score=60.42 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=71.2
Q ss_pred CceeecCHHHHHHhHhCC---CeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942 29 PAKEFTSVDEIKAFIADS---KVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS 102 (216)
Q Consensus 29 ~v~~l~s~~~~~~~~~~~---~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t 102 (216)
.+..|++.+++.+.+... .+++|-||.+||. .+.+.+.++|.+++.+.|. +|+ ..
T Consensus 63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~--------------kVd-----~d 123 (175)
T cd02987 63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFC--------------KIR-----AS 123 (175)
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEE--------------EEe-----cc
Confidence 356787768888877653 3899999999974 4467899999999888898 454 33
Q ss_pred ccHHHHHhcCCCC-CeEEEEecCCCCcccc-------cCCCCCHHHHHHHHhhc
Q psy7942 103 TNADILAEYSVDD-DTVAIFKKFDEGRVNY-------EGPASDEAALRKFLSTQ 148 (216)
Q Consensus 103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y-------~G~~~~~~~l~~fi~~~ 148 (216)
.. .++.+|++.. |++++|+++.. ...+ ..++ +.+.|+.|+..+
T Consensus 124 ~~-~l~~~f~v~~vPTlllyk~G~~-v~~~vG~~~~~g~~f-~~~~le~~L~~~ 174 (175)
T cd02987 124 AT-GASDEFDTDALPALLVYKGGEL-IGNFVRVTEDLGEDF-DAEDLESFLVEY 174 (175)
T ss_pred ch-hhHHhCCCCCCCEEEEEECCEE-EEEEechHHhcCCCC-CHHHHHHHHHhc
Confidence 33 6889999985 99999996432 1111 1256 888999888754
No 66
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.03 E-value=5.5e-05 Score=54.25 Aligned_cols=85 Identities=15% Similarity=0.278 Sum_probs=64.9
Q ss_pred HhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-
Q psy7942 41 AFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD- 115 (216)
Q Consensus 41 ~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~- 115 (216)
.+.+.+++++|.|+.+||. ...+.+.++++++ +.+.|. .+| ...++++++++++..
T Consensus 8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~--------------~id-----~d~~~~l~~~~~v~~v 68 (97)
T cd02949 8 LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFV--------------EID-----IDEDQEIAEAAGIMGT 68 (97)
T ss_pred HHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEE--------------EEE-----CCCCHHHHHHCCCeec
Confidence 3455788999999999974 4556778888887 567777 455 667788999999986
Q ss_pred CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942 116 DTVAIFKKFDEGRVNYEGPASDEAALRKFLS 146 (216)
Q Consensus 116 p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~ 146 (216)
|++++|++ .+....+.|.. +.+.|.+|++
T Consensus 69 Pt~~i~~~-g~~v~~~~g~~-~~~~~~~~l~ 97 (97)
T cd02949 69 PTVQFFKD-KELVKEISGVK-MKSEYREFIE 97 (97)
T ss_pred cEEEEEEC-CeEEEEEeCCc-cHHHHHHhhC
Confidence 99999985 33345577877 8888998874
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.95 E-value=0.00016 Score=59.68 Aligned_cols=120 Identities=13% Similarity=0.174 Sum_probs=83.7
Q ss_pred CCCcc--cCCCCCChHHHHHHHHhhhC--CCceeecCHHHHHHhHh-CCCeEEEEEecCCCh---hHHHHHHHHHhhCCC
Q psy7942 3 SCLPG--ERRGGRTAEDIVNWLLKKTG--PPAKEFTSVDEIKAFIA-DSKVVVAGLFKDASS---ELAKTFNEIASKVDD 74 (216)
Q Consensus 3 ~g~~~--~Y~G~Rta~~iv~~l~~~~~--~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~ 74 (216)
+|... .|.|....+.+.+|+....+ +....+ +.+..+.+.. +.++.++.|+.+||. .....+.+++...++
T Consensus 86 ~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~ 164 (215)
T TIGR02187 86 EGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDK 164 (215)
T ss_pred CCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCc
Confidence 45543 68899999999999988753 222344 3333444433 566677778899874 445566666666667
Q ss_pred ceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942 75 LVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 75 ~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
+.|. .+| ...+++++++|++.. |++++++. . . .|.|.. ..+.|.+||..
T Consensus 165 i~~~--------------~vD-----~~~~~~~~~~~~V~~vPtl~i~~~--~-~-~~~G~~-~~~~l~~~l~~ 214 (215)
T TIGR02187 165 ILGE--------------MIE-----ANENPDLAEKYGVMSVPKIVINKG--V-E-EFVGAY-PEEQFLEYILS 214 (215)
T ss_pred eEEE--------------EEe-----CCCCHHHHHHhCCccCCEEEEecC--C-E-EEECCC-CHHHHHHHHHh
Confidence 7776 455 556788999999976 99999874 2 1 288887 88999999864
No 68
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.84 E-value=0.0002 Score=53.72 Aligned_cols=104 Identities=19% Similarity=0.330 Sum_probs=69.7
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecC-CChhHHHHHHHHH-hhC---CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKD-ASSELAKTFNEIA-SKV---DDLVFDASSELAKTFNEIASKVDDLVFVTSTN 104 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~-~~~~~~~~f~~~A-~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~ 104 (216)
...|.+ -.+++++...+.++|-|=.- .-++..++|..+| ... +++-++ .=+|.| +=.-.|
T Consensus 6 ~v~LD~-~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvA------------eVGikD--YGek~N 70 (126)
T PF07912_consen 6 CVPLDE-LTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVA------------EVGIKD--YGEKEN 70 (126)
T ss_dssp SEEEST-THHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEE------------EEECBS--SSS-CC
T ss_pred eeeccc-eehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEE------------EeCccc--ccchhH
Confidence 445654 57899999999999987211 1256677888888 332 566555 001221 102246
Q ss_pred HHHHHhcCCC---CCeEEEEecCCCCcccc--cCCCCCHHHHHHHHhhcC
Q psy7942 105 ADILAEYSVD---DDTVAIFKKFDEGRVNY--EGPASDEAALRKFLSTQS 149 (216)
Q Consensus 105 ~~v~~~~~v~---~p~i~~~~~~de~~~~y--~G~~~~~~~l~~fi~~~~ 149 (216)
.+++++|+++ .|.+.+|+...++++.| +|++ +.+.|.+|++.++
T Consensus 71 ~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~-t~~~l~~fvk~~t 119 (126)
T PF07912_consen 71 MELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDV-TADNLQRFVKSNT 119 (126)
T ss_dssp HHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S--HHHHHHHHHHTS
T ss_pred HHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCc-cHHHHHHHHHhCC
Confidence 7899999996 39999999666778888 8999 9999999999985
No 69
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.82 E-value=0.00016 Score=55.87 Aligned_cols=94 Identities=16% Similarity=0.214 Sum_probs=65.3
Q ss_pred HHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcC
Q psy7942 37 DEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYS 112 (216)
Q Consensus 37 ~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~ 112 (216)
.+++..+..+++++|.|+.+||. ...+.|.+++..+ +.+.|.. -.+| .....+++++|+
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~------------v~vd-----~~~~~~~~~~~~ 73 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVM------------LNVD-----NPKWLPEIDRYR 73 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEE------------EEcC-----CcccHHHHHHcC
Confidence 45566777889999999999984 4567888888887 4555651 0111 112246789999
Q ss_pred CCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 113 VDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 113 v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
+.. |++++|.+..+....+.|.. +.+.|.++|...
T Consensus 74 V~~iPt~v~~~~~G~~v~~~~G~~-~~~~l~~~l~~l 109 (142)
T cd02950 74 VDGIPHFVFLDREGNEEGQSIGLQ-PKQVLAQNLDAL 109 (142)
T ss_pred CCCCCEEEEECCCCCEEEEEeCCC-CHHHHHHHHHHH
Confidence 986 99999964233334567877 788888887764
No 70
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.81 E-value=4.6e-05 Score=56.59 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=43.6
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEeC----CccchhhhhHHHHHHHHhcc-CceEEEEcCCCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFSK----AAGHYESHFEPVQTVAKDFR-EKEEQDEDDDQP 211 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~~----~~~~~~~~~~~l~~vA~~~r-~~~~f~~~d~~~ 211 (216)
|+++|.+|+..++..+ .++++++. +.++.+.+.+.++++|++|| ++++|+|+|...
T Consensus 1 v~~~~~en~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~ 61 (111)
T cd03073 1 VGHRTKDNRAQFTKKP---LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKED 61 (111)
T ss_pred CCeeccchHHHhccCC---eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHH
Confidence 5789999999997544 24445433 44567889999999999999 799999999643
No 71
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.76 E-value=0.00039 Score=53.85 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=60.1
Q ss_pred ceeecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCCC-ceEEecchhhHHHHhhhhccccceeeecc
Q psy7942 30 AKEFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVDD-LVFDASSELAKTFNEIASKVDDLVFVTST 103 (216)
Q Consensus 30 v~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~t~ 103 (216)
+..|.|.+++++.+. .+++++|-|+++||. ...+.+.++|.++.+ +.|. .|| ...
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~--------------kVD-----VDe 65 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIY--------------LVD-----ITE 65 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEE--------------EEE-----CCC
Confidence 346788999998885 578999999999985 445789999999855 5666 566 677
Q ss_pred cHHHHHhcCCC-CCeEE-EEecC
Q psy7942 104 NADILAEYSVD-DDTVA-IFKKF 124 (216)
Q Consensus 104 ~~~v~~~~~v~-~p~i~-~~~~~ 124 (216)
+++++..|++. .|++. +||+.
T Consensus 66 ~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 66 VPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred CHHHHHHcCccCCCcEEEEEECC
Confidence 88999999998 56666 88864
No 72
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.72 E-value=0.00056 Score=50.71 Aligned_cols=85 Identities=14% Similarity=0.231 Sum_probs=60.7
Q ss_pred HhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeE
Q psy7942 43 IADSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTV 118 (216)
Q Consensus 43 ~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i 118 (216)
+.....++|.|+++|| ....+.+.+++..++.+.|. .+| ...+++++++|++.. |++
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~--------------~vd-----~d~~~~l~~~~~v~~vPt~ 79 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLE--------------IYD-----FDEDKEKAEKYGVERVPTT 79 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEE--------------EEe-----CCcCHHHHHHcCCCcCCEE
Confidence 4444446666778886 34557788888777777777 344 456788999999986 999
Q ss_pred EEEecCCC-CcccccCCCCCHHHHHHHHhh
Q psy7942 119 AIFKKFDE-GRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 119 ~~~~~~de-~~~~y~G~~~~~~~l~~fi~~ 147 (216)
++|++... ....|.|-. ....+.+||..
T Consensus 80 ~i~~~g~~~~~~~~~G~~-~~~el~~~i~~ 108 (113)
T cd02975 80 IFLQDGGKDGGIRYYGLP-AGYEFASLIED 108 (113)
T ss_pred EEEeCCeecceEEEEecC-chHHHHHHHHH
Confidence 99996432 234688877 77888888864
No 73
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0004 Score=59.58 Aligned_cols=100 Identities=21% Similarity=0.336 Sum_probs=77.3
Q ss_pred ceeecCHHHHHH-hHh-C-CCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942 30 AKEFTSVDEIKA-FIA-D-SKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTS 102 (216)
Q Consensus 30 v~~l~s~~~~~~-~~~-~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t 102 (216)
++.+++ .+++. +++ + ..+++|.|..+||. .+.+...+++..+ ..+.++ +|+ +.
T Consensus 25 I~dvT~-anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~La--------------kvN-----~D 84 (304)
T COG3118 25 IKDVTE-ANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLA--------------KVN-----CD 84 (304)
T ss_pred ceechH-hHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEE--------------Eec-----CC
Confidence 556654 56655 444 3 45799999999974 5677888888888 667777 666 88
Q ss_pred ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCC
Q psy7942 103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLP 151 (216)
Q Consensus 103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P 151 (216)
.++.|+..|+++. |+|++|+.+ ....-|.|.. .++.|..|+.....+
T Consensus 85 ~~p~vAaqfgiqsIPtV~af~dG-qpVdgF~G~q-Pesqlr~~ld~~~~~ 132 (304)
T COG3118 85 AEPMVAAQFGVQSIPTVYAFKDG-QPVDGFQGAQ-PESQLRQFLDKVLPA 132 (304)
T ss_pred cchhHHHHhCcCcCCeEEEeeCC-cCccccCCCC-cHHHHHHHHHHhcCh
Confidence 8999999999986 999999952 2345699998 889999999988655
No 74
>KOG0907|consensus
Probab=97.70 E-value=0.00047 Score=50.78 Aligned_cols=86 Identities=26% Similarity=0.388 Sum_probs=62.4
Q ss_pred HhHhC-CCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-
Q psy7942 41 AFIAD-SKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD- 115 (216)
Q Consensus 41 ~~~~~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~- 115 (216)
+.... ++.++|-|++.||+ ...+.|.++|.+|+++.|. .+| ....+++++++++..
T Consensus 15 ~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Fl--------------kvd-----vde~~~~~~~~~V~~~ 75 (106)
T KOG0907|consen 15 SAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFL--------------KVD-----VDELEEVAKEFNVKAM 75 (106)
T ss_pred HHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEE--------------EEe-----cccCHhHHHhcCceEe
Confidence 33443 68899999999984 5578999999999778887 343 222588999999986
Q ss_pred CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 116 DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 116 p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
||+++||++++ ...+-|. +...|.+.|..+
T Consensus 76 PTf~f~k~g~~-~~~~vGa--~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 76 PTFVFYKGGEE-VDEVVGA--NKAELEKKIAKH 105 (106)
T ss_pred eEEEEEECCEE-EEEEecC--CHHHHHHHHHhc
Confidence 99999997543 4455565 345677766543
No 75
>PTZ00062 glutaredoxin; Provisional
Probab=97.68 E-value=0.00094 Score=54.85 Aligned_cols=113 Identities=14% Similarity=0.201 Sum_probs=76.0
Q ss_pred ecCHHHHHHhHhCC-CeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942 33 FTSVDEIKAFIADS-KVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL 108 (216)
Q Consensus 33 l~s~~~~~~~~~~~-~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~ 108 (216)
+.+.++++++++++ ..+++.|.++|+ ....+.+.+++..++++.|. .+. .+
T Consensus 3 ~~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~----------------------~V~-~d-- 57 (204)
T PTZ00062 3 FIKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFY----------------------VVN-LA-- 57 (204)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEE----------------------EEc-cc--
Confidence 46788999998865 778888888986 45577888999999899998 332 11
Q ss_pred HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchHHHhhccCCcceEEEEEe
Q psy7942 109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFS 178 (216)
Q Consensus 109 ~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~ 178 (216)
|+|.. |++++|++..+ .-.+.|. +...|.+++..+.-+.-.+-..+-++++.+. .++++|..
T Consensus 58 --~~V~~vPtfv~~~~g~~-i~r~~G~--~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~---~~Vvvf~K 120 (204)
T PTZ00062 58 --DANNEYGVFEFYQNSQL-INSLEGC--NTSTLVSFIRGWAQKGSSEDTVEKIERLIRN---HKILLFMK 120 (204)
T ss_pred --cCcccceEEEEEECCEE-EeeeeCC--CHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc---CCEEEEEc
Confidence 88886 99999996432 3345664 5678888887765432222111223444443 34777875
No 76
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.62 E-value=0.0013 Score=53.43 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=65.1
Q ss_pred CceeecCHHHHHH-hHhCC--CeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942 29 PAKEFTSVDEIKA-FIADS--KVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS 102 (216)
Q Consensus 29 ~v~~l~s~~~~~~-~~~~~--~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t 102 (216)
.+..++ .+++.. +.++. ..++|-||.+|+ ..+.+.+.++|.++..+.|. .|+
T Consensus 83 ~v~eis-~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFv--------------kI~------- 140 (192)
T cd02988 83 EVYEIS-KPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFV--------------KII------- 140 (192)
T ss_pred eEEEeC-HHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEE--------------EEE-------
Confidence 355665 455554 44443 478999999986 45567999999999888888 232
Q ss_pred ccHHHHHhcCCCC-CeEEEEecCCCC-----cccccC-CCCCHHHHHHHHhhc
Q psy7942 103 TNADILAEYSVDD-DTVAIFKKFDEG-----RVNYEG-PASDEAALRKFLSTQ 148 (216)
Q Consensus 103 ~~~~v~~~~~v~~-p~i~~~~~~de~-----~~~y~G-~~~~~~~l~~fi~~~ 148 (216)
. ......|++.. |++++|+++... ...+-| .+ +.++|+.++...
T Consensus 141 a-d~~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~-~~~~lE~~L~~~ 191 (192)
T cd02988 141 S-TQCIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNT-TMEDLEWLLVQV 191 (192)
T ss_pred h-HHhHhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCC-CHHHHHHHHHhc
Confidence 1 23467899885 999999975321 112233 46 888898887653
No 77
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.61 E-value=0.00059 Score=50.83 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=56.5
Q ss_pred HHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCCC-ceEEecchhhHHHHhhhhccccceeeecccHHHHH
Q psy7942 36 VDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVDD-LVFDASSELAKTFNEIASKVDDLVFVTSTNADILA 109 (216)
Q Consensus 36 ~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~ 109 (216)
.++++..+. ++++++|-|+++||. ...+.|.++|.++.+ +.|. .+| ....+++++
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~--------------kVD-----VDev~dva~ 62 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIY--------------LVD-----VDKVPVYTQ 62 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEE--------------EEe-----ccccHHHHH
Confidence 456666555 589999999999985 445789999999966 8888 666 777889999
Q ss_pred hcCCC-CCeEEEEecC
Q psy7942 110 EYSVD-DDTVAIFKKF 124 (216)
Q Consensus 110 ~~~v~-~p~i~~~~~~ 124 (216)
.|++. -|+.++|++.
T Consensus 63 ~y~I~amPtfvffkng 78 (114)
T cd02986 63 YFDISYIPSTIFFFNG 78 (114)
T ss_pred hcCceeCcEEEEEECC
Confidence 99998 5999999964
No 78
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.54 E-value=0.00076 Score=52.89 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=58.7
Q ss_pred ceeecCHHHHHHhHhC--CCeEEEEEecCCC---hhHHHHHHHHHhhC--CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942 30 AKEFTSVDEIKAFIAD--SKVVVAGLFKDAS---SELAKTFNEIASKV--DDLVFDASSELAKTFNEIASKVDDLVFVTS 102 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~---~~~~~~f~~~A~~~--~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t 102 (216)
+..++ .+++++.+.. ..+++|.|+.+|| ..+.+.|.++|+++ .++.|+ .|| ..
T Consensus 30 v~~l~-~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~--------------~VD-----vd 89 (152)
T cd02962 30 IKYFT-PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFG--------------KID-----IG 89 (152)
T ss_pred cEEcC-HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEE--------------EEE-----CC
Confidence 44554 5788888753 4689999999997 45567899999987 358888 566 77
Q ss_pred ccHHHHHhcCCCC-------CeEEEEecC
Q psy7942 103 TNADILAEYSVDD-------DTVAIFKKF 124 (216)
Q Consensus 103 ~~~~v~~~~~v~~-------p~i~~~~~~ 124 (216)
.+++++++++++. |++++|++.
T Consensus 90 ~~~~la~~~~V~~~~~v~~~PT~ilf~~G 118 (152)
T cd02962 90 RFPNVAEKFRVSTSPLSKQLPTIILFQGG 118 (152)
T ss_pred CCHHHHHHcCceecCCcCCCCEEEEEECC
Confidence 7889999999864 999999964
No 79
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.51 E-value=0.0015 Score=48.47 Aligned_cols=92 Identities=16% Similarity=0.306 Sum_probs=63.6
Q ss_pred ceeecCHHHHHHhHhC-CCeEEEEEecCCC---hhHHHHHHHHHhhCC----CceEEecchhhHHHHhhhhccccceeee
Q psy7942 30 AKEFTSVDEIKAFIAD-SKVVVAGLFKDAS---SELAKTFNEIASKVD----DLVFDASSELAKTFNEIASKVDDLVFVT 101 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~-~~v~~V~f~~~~~---~~~~~~f~~~A~~~~----~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
+..++ .+++++.+.+ +++++|.|+.+|| ....+.|.++|.++. .+.|+ .+| +
T Consensus 3 v~~l~-~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~--------------~vd-----~ 62 (114)
T cd02992 3 VIVLD-AASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVA--------------AVD-----C 62 (114)
T ss_pred eEECC-HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEE--------------EEe-----c
Confidence 44554 5788887765 4689999999997 455678999998762 36666 333 3
Q ss_pred c--ccHHHHHhcCCCC-CeEEEEecCCC-C--cccccCCCCCHHHH
Q psy7942 102 S--TNADILAEYSVDD-DTVAIFKKFDE-G--RVNYEGPASDEAAL 141 (216)
Q Consensus 102 t--~~~~v~~~~~v~~-p~i~~~~~~de-~--~~~y~G~~~~~~~l 141 (216)
. .++++++++++.. |++++|++... . -..|+|+....+++
T Consensus 63 ~~~~~~~~~~~~~i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 63 ADEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred cchhhHHHHHhCCCCCCCEEEEECCCCccCCCCCcccCCccCHHHH
Confidence 3 2467899999986 99999997532 1 14677874355554
No 80
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.48 E-value=0.00095 Score=51.04 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=78.9
Q ss_pred HHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCC-----ChhHHHHHHHHHhhCC--CceEEecchhhHHHH
Q psy7942 16 EDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDA-----SSELAKTFNEIASKVD--DLVFDASSELAKTFN 88 (216)
Q Consensus 16 ~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~-----~~~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~ 88 (216)
..|++=|..+ |- ..++ ...+++|+......++.+-.+. ..+..-...++|+.+. ++.|+
T Consensus 8 ~~l~~rl~~~-g~--~~~~-~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~a---------- 73 (132)
T PRK11509 8 DALWQRMLAR-GW--TPVS-ESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVA---------- 73 (132)
T ss_pred HHHHHHHHHc-CC--Cccc-cccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEE----------
Confidence 3455555553 32 2343 3788999988888887654442 3566778889999984 37788
Q ss_pred hhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942 89 EIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS 149 (216)
Q Consensus 89 ~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~ 149 (216)
.+| ...+++++.+|+|.. ||+++||++.. .-...|-. +.+.+.+||....
T Consensus 74 ----kVD-----iD~~~~LA~~fgV~siPTLl~FkdGk~-v~~i~G~~-~k~~l~~~I~~~L 124 (132)
T PRK11509 74 ----IAD-----LEQSEAIGDRFGVFRFPATLVFTGGNY-RGVLNGIH-PWAELINLMRGLV 124 (132)
T ss_pred ----EEE-----CCCCHHHHHHcCCccCCEEEEEECCEE-EEEEeCcC-CHHHHHHHHHHHh
Confidence 566 667899999999986 99999996432 34567877 8899999998753
No 81
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.46 E-value=0.0015 Score=48.79 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=61.6
Q ss_pred HHHHHHhHhCC-CeEEEEEecCCChhH---HHHHH---HHHhhC-CCceEEecchhhHHHHhhhhccc--cc------ee
Q psy7942 36 VDEIKAFIADS-KVVVAGLFKDASSEL---AKTFN---EIASKV-DDLVFDASSELAKTFNEIASKVD--DL------VF 99 (216)
Q Consensus 36 ~~~~~~~~~~~-~v~~V~f~~~~~~~~---~~~f~---~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~--~~------~~ 99 (216)
.++++..++++ ++++|.|+.+||... .+.+. .+...+ +++.+. .++ +. -.
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~i~~d~~~~~~~~~~ 68 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVV--------------YINIDGDKEVTDFDG 68 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEE--------------EEEccCCceeeccCC
Confidence 46778888888 999999999998533 23332 333333 344443 111 00 00
Q ss_pred eecccHHHHHhcCCCC-CeEEEEecC-CCCcccccCCCCCHHHHHHHHhh
Q psy7942 100 VTSTNADILAEYSVDD-DTVAIFKKF-DEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 100 ~~t~~~~v~~~~~v~~-p~i~~~~~~-de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
....+++++..|++.. |+++++.+. .+....+.|.. +.+.+.++|..
T Consensus 69 ~~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~-~~~~~~~~l~~ 117 (125)
T cd02951 69 EALSEKELARKYRVRFTPTVIFLDPEGGKEIARLPGYL-PPDEFLAYLEY 117 (125)
T ss_pred CCccHHHHHHHcCCccccEEEEEcCCCCceeEEecCCC-CHHHHHHHHHH
Confidence 0012467899999986 999999974 24345678887 77888887765
No 82
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=97.42 E-value=0.00038 Score=50.95 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=50.3
Q ss_pred CceeeeCcchHHHhhccCCc-ceEEEEEeCCccchhhhhHHHHHHHHhccC--ceEEEEcCCCCC
Q psy7942 151 PLVVEFNHETAQKIFGGEIK-SHLLVFFSKAAGHYESHFEPVQTVAKDFRE--KEEQDEDDDQPK 212 (216)
Q Consensus 151 P~v~~~~~~~~~~~~~~~~~-~~lllf~~~~~~~~~~~~~~l~~vA~~~r~--~~~f~~~d~~~~ 212 (216)
|.++.++.+++..+++.... .+++.|+.....+.-++++.++++|++|++ +++++|+|--++
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F 65 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF 65 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC
Confidence 56778889998888886543 456678887777889999999999999987 489999986543
No 83
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.41 E-value=0.00035 Score=50.09 Aligned_cols=52 Identities=27% Similarity=0.215 Sum_probs=39.6
Q ss_pred chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 159 ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 159 ~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
+++..+...+ .+.+++|...++++...+.+.++++|++|++++.|+|+|...
T Consensus 3 ~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~ 54 (103)
T cd02982 3 ETFFNYEESG-KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD 54 (103)
T ss_pred hHHhhhhhcC-CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh
Confidence 3444444433 345667877776678999999999999999999999998754
No 84
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.37 E-value=0.0005 Score=52.45 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=45.1
Q ss_pred CceeeeCcchH-HHhhccCCcceEEEEEeC----CccchhhhhHHHHHHHHhccCc-eEEEEcCCCCC
Q psy7942 151 PLVVEFNHETA-QKIFGGEIKSHLLVFFSK----AAGHYESHFEPVQTVAKDFREK-EEQDEDDDQPK 212 (216)
Q Consensus 151 P~v~~~~~~~~-~~~~~~~~~~~lllf~~~----~~~~~~~~~~~l~~vA~~~r~~-~~f~~~d~~~~ 212 (216)
|-+.++++++. ....... ..+++.|++. +.++++.+++.|+++|++||++ ++|+|+|....
T Consensus 2 ~~~~~l~~~~~~~~~C~~~-~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~ 68 (130)
T cd02983 2 PEIIELTSEDVFEETCEEK-QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ 68 (130)
T ss_pred CceEEecCHHHHHhhccCC-CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc
Confidence 67888987654 3344332 3566667753 3446788999999999999999 99999998764
No 85
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.30 E-value=0.0033 Score=47.34 Aligned_cols=91 Identities=8% Similarity=0.111 Sum_probs=61.1
Q ss_pred CHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeeccc-------
Q psy7942 35 SVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTN------- 104 (216)
Q Consensus 35 s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~------- 104 (216)
+.+++.+.+++++..+|+|+.+|| ....+.+.+++++. ...|. .+| ...+
T Consensus 12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y--------------~vd-----vd~~~~~~~~~ 71 (122)
T TIGR01295 12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIY--------------YID-----SENNGSFEMSS 71 (122)
T ss_pred CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEE--------------EEE-----CCCccCcCccc
Confidence 568899999999999999999998 45567888888874 33333 111 1111
Q ss_pred ----HHHHHhcCCC-----CCeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942 105 ----ADILAEYSVD-----DDTVAIFKKFDEGRVNYEGPASDEAALRKFLS 146 (216)
Q Consensus 105 ----~~v~~~~~v~-----~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~ 146 (216)
+++.++|++. .|++++|+++.+ .....|...+.+.|.+|+.
T Consensus 72 ~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~-v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 72 LNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ-VSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HHHHHHHHHHcCCcccCCCCCEEEEEeCCeE-EEEEeCCCCCHHHHHHHhh
Confidence 1345666543 499999997543 3345674437899999874
No 86
>KOG0908|consensus
Probab=97.20 E-value=0.0024 Score=53.58 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=73.0
Q ss_pred CceeecCHHHHHHhHhC--CCeEEEEEecCCChh---HHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942 29 PAKEFTSVDEIKAFIAD--SKVVVAGLFKDASSE---LAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST 103 (216)
Q Consensus 29 ~v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~~---~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~ 103 (216)
+|+++.+.++++.-+.. .+.++|-|+.+||++ ..+.|.++|.+|+...|. +|| ...
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFl--------------kVd-----Vd~ 62 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFL--------------KVD-----VDE 62 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEE--------------EEe-----HHH
Confidence 57889999999887764 458999999999854 477999999999888887 444 333
Q ss_pred cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
-+..+..+||+. ||.++|++.- ....++|. +...|+.=|..+
T Consensus 63 c~~taa~~gV~amPTFiff~ng~-kid~~qGA--d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 63 CRGTAATNGVNAMPTFIFFRNGV-KIDQIQGA--DASGLEEKVAKY 105 (288)
T ss_pred hhchhhhcCcccCceEEEEecCe-EeeeecCC--CHHHHHHHHHHH
Confidence 345678899987 9999999742 24457776 456666666554
No 87
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.87 E-value=0.044 Score=51.49 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=99.4
Q ss_pred HHHHHhHh--CCCeEEEEEecCCC--hhHHHHH-HHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhc
Q psy7942 37 DEIKAFIA--DSKVVVAGLFKDAS--SELAKTF-NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEY 111 (216)
Q Consensus 37 ~~~~~~~~--~~~v~~V~f~~~~~--~~~~~~f-~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~ 111 (216)
++++..+. .++|.++.|..+.+ +.....| .++|.-.+.+.+- ..| ...+++++++|
T Consensus 355 ~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~--------------~~~-----~~~~~~~~~~~ 415 (555)
T TIGR03143 355 QQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSE--------------AVN-----RGEEPESETLP 415 (555)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEE--------------Eec-----cccchhhHhhc
Confidence 34555554 46777777775432 2333333 3555433666654 111 34567889999
Q ss_pred CCCC-CeEEEEecCC-CCcccccCCCCCHHHHHHHHhh---cCCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhh
Q psy7942 112 SVDD-DTVAIFKKFD-EGRVNYEGPASDEAALRKFLST---QSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYES 186 (216)
Q Consensus 112 ~v~~-p~i~~~~~~d-e~~~~y~G~~~~~~~l~~fi~~---~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~ 186 (216)
++.. |++.+++... ...+.|.|-. .-.++..||.. .+-+ -..++.+....+-.-+.+..+-+|+..+++.+++
T Consensus 416 ~v~~~P~~~i~~~~~~~~~i~f~g~P-~G~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~ 493 (555)
T TIGR03143 416 KITKLPTVALLDDDGNYTGLKFHGVP-SGHELNSFILALYNAAGP-GQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPD 493 (555)
T ss_pred CCCcCCEEEEEeCCCcccceEEEecC-ccHhHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHH
Confidence 9975 9999986433 3348899866 55556666544 2322 2356777766666544345567788888888899
Q ss_pred hhHHHHHHHHhccCceEEEEcCCCCCc
Q psy7942 187 HFEPVQTVAKDFREKEEQDEDDDQPKR 213 (216)
Q Consensus 187 ~~~~l~~vA~~~r~~~~f~~~d~~~~~ 213 (216)
..+.++++|.++. ++..-++|.+.+.
T Consensus 494 ~~~~~~~~~~~~~-~i~~~~i~~~~~~ 519 (555)
T TIGR03143 494 VVLAAQRIASLNP-NVEAEMIDVSHFP 519 (555)
T ss_pred HHHHHHHHHHhCC-CceEEEEECcccH
Confidence 9999999999986 6777777776553
No 88
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.87 E-value=0.013 Score=55.35 Aligned_cols=99 Identities=21% Similarity=0.316 Sum_probs=68.6
Q ss_pred ceeecCHHHHHHhHh----CCCeEEEEEecCCChhHHH---H-H--HHHHhhCCCceEEecchhhHHHHhhhhcccccee
Q psy7942 30 AKEFTSVDEIKAFIA----DSKVVVAGLFKDASSELAK---T-F--NEIASKVDDLVFDASSELAKTFNEIASKVDDLVF 99 (216)
Q Consensus 30 v~~l~s~~~~~~~~~----~~~v~~V~f~~~~~~~~~~---~-f--~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 99 (216)
-+.+.+.+++++.++ ++++++|.|+.+||..... . | .++.+.++++.+. ++|
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v--------------~vD---- 515 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLL--------------QAD---- 515 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEE--------------EEE----
Confidence 346677888877654 3679999999999854432 2 2 3455556666665 454
Q ss_pred eecc----cHHHHHhcCCCC-CeEEEEecCCCC--cccccCCCCCHHHHHHHHhhc
Q psy7942 100 VTST----NADILAEYSVDD-DTVAIFKKFDEG--RVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 100 ~~t~----~~~v~~~~~v~~-p~i~~~~~~de~--~~~y~G~~~~~~~l~~fi~~~ 148 (216)
.+. +++++++|++.+ |++++|++..+. ...+.|.. +.+.+.+++++.
T Consensus 516 -vt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~-~~~~f~~~L~~~ 569 (571)
T PRK00293 516 -VTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFM-DAAAFAAHLRQL 569 (571)
T ss_pred -CCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCC-CHHHHHHHHHHh
Confidence 442 357889999987 999999753222 24578888 899999998764
No 89
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.84 E-value=0.0098 Score=43.21 Aligned_cols=97 Identities=15% Similarity=0.229 Sum_probs=65.5
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCCC--hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc--c
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS--SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST--N 104 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~--~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~--~ 104 (216)
+..|++..++.++++.+..++|.|..+.. ....+.|.++|... ..-+.. .|| +.. .
T Consensus 3 ie~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~--------------~vd-----Cgd~e~ 63 (112)
T cd03067 3 IEDISDHKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIA--------------WID-----CGDSES 63 (112)
T ss_pred cccccchHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEE--------------EEe-----cCChHH
Confidence 34567788999999998888888877653 45577999999887 222222 122 443 5
Q ss_pred HHHHHhcCCC----C-CeE-EEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942 105 ADILAEYSVD----D-DTV-AIFKKFDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 105 ~~v~~~~~v~----~-p~i-~~~~~~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
+.+++++.++ . |.. .=|+. .+-...|+-.. +..+|.+|++.
T Consensus 64 kKLCKKlKv~~~~kp~~~~LkHYKd-G~fHkdYdR~~-t~kSmv~FlrD 110 (112)
T cd03067 64 RKLCKKLKVDPSSKPKPVELKHYKD-GDFHTEYNRQL-TFKSMVAFLRD 110 (112)
T ss_pred HHHHHHHccCCCCCCCcchhhcccC-CCccccccchh-hHHHHHHHhhC
Confidence 6789999987 2 322 23332 12245688788 89999999875
No 90
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.83 E-value=0.014 Score=39.79 Aligned_cols=74 Identities=14% Similarity=0.266 Sum_probs=54.2
Q ss_pred EEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEec
Q psy7942 49 VVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKK 123 (216)
Q Consensus 49 ~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~ 123 (216)
-+..|+.+|| ....+.+.+++..+ ..+.+. .+| ...++++++++++.. |++++ .
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~--------------~vd-----~~~~~~~~~~~~v~~vPt~~~-~- 60 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVE--------------YIN-----VMENPQKAMEYGIMAVPAIVI-N- 60 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEE--------------EEe-----CccCHHHHHHcCCccCCEEEE-C-
Confidence 3556777876 45677888888877 456666 455 556788899999986 99986 2
Q ss_pred CCCCcccccCCCCCHHHHHHHHhh
Q psy7942 124 FDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 124 ~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
+ ...+.|.. +.+.|.+++..
T Consensus 61 --g-~~~~~G~~-~~~~l~~~l~~ 80 (82)
T TIGR00411 61 --G-DVEFIGAP-TKEELVEAIKK 80 (82)
T ss_pred --C-EEEEecCC-CHHHHHHHHHh
Confidence 2 24788887 88999988865
No 91
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=96.25 E-value=0.016 Score=41.43 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=47.5
Q ss_pred CceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 151 PLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 151 P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
|-+.+++.+++......+ .+.++.|+..+.+....+...+.++|+++++++.|..+|-.
T Consensus 1 ~~~~~l~~~~f~~~v~~~-~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~ 59 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSG-EIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG 59 (101)
T ss_pred CCeEEcCHhhHHHHhcCC-CeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC
Confidence 457889988988877655 45566688888888899999999999999998887766644
No 92
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.23 E-value=0.034 Score=41.73 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=53.9
Q ss_pred ecCHHHHHHhHhC--CCeEEEEEec-------CCChh---HHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccc--cc
Q psy7942 33 FTSVDEIKAFIAD--SKVVVAGLFK-------DASSE---LAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVD--DL 97 (216)
Q Consensus 33 l~s~~~~~~~~~~--~~v~~V~f~~-------~~~~~---~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~--~~ 97 (216)
+.+.+++.+.+.+ +++++|.|++ +||.+ ..+.+.+++.++. ++.|. .|+ +.
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv--------------~Vdvd~~ 71 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFI--------------YCDVGDR 71 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEE--------------EEEcCCc
Confidence 4577888888875 6789999999 89853 3468888888884 67777 333 00
Q ss_pred -eeeecccHHHHHhcCCC-C-CeEEEEec
Q psy7942 98 -VFVTSTNADILAEYSVD-D-DTVAIFKK 123 (216)
Q Consensus 98 -~~~~t~~~~v~~~~~v~-~-p~i~~~~~ 123 (216)
.| ...+.+++.++++. . |++++|+.
T Consensus 72 ~~w-~d~~~~~~~~~~I~~~iPT~~~~~~ 99 (119)
T cd02952 72 PYW-RDPNNPFRTDPKLTTGVPTLLRWKT 99 (119)
T ss_pred ccc-cCcchhhHhccCcccCCCEEEEEcC
Confidence 00 01245788899997 5 99999974
No 93
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.85 E-value=0.077 Score=39.17 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=59.8
Q ss_pred HHHHHHhHhCCCeEEEEEecCCC-hhHHHHHHHHHhh---C-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHh
Q psy7942 36 VDEIKAFIADSKVVVAGLFKDAS-SELAKTFNEIASK---V-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAE 110 (216)
Q Consensus 36 ~~~~~~~~~~~~v~~V~f~~~~~-~~~~~~f~~~A~~---~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~ 110 (216)
.+..+.+..+.-...+.||.+.+ ......|.++|++ + ..+.|.. +| ......+++.
T Consensus 6 ~e~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~--------------~d-----~~~~~~~~~~ 66 (111)
T cd03072 6 FENAEELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLT--------------AD-----GDKFRHPLLH 66 (111)
T ss_pred cccHHHHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEE--------------Ee-----chHhhhHHHH
Confidence 34556666655444444553333 4567799999999 7 6677871 22 2222237888
Q ss_pred cCCCC---CeEEEEecCCCCccc-ccCCCCCHHHHHHHHhhc
Q psy7942 111 YSVDD---DTVAIFKKFDEGRVN-YEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 111 ~~v~~---p~i~~~~~~de~~~~-y~G~~~~~~~l~~fi~~~ 148 (216)
+|++. |.+++....+..... +.+.+ +.++|.+|+...
T Consensus 67 fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~-t~~~i~~Fv~~~ 107 (111)
T cd03072 67 LGKTPADLPVIAIDSFRHMYLFPDFEDVY-VPGKLKQFVLDL 107 (111)
T ss_pred cCCCHhHCCEEEEEcchhcCcCCCCcccc-CHHHHHHHHHHH
Confidence 99874 888887752212333 56888 999999999764
No 94
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.85 E-value=0.094 Score=35.81 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=47.2
Q ss_pred EEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCC
Q psy7942 51 AGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFD 125 (216)
Q Consensus 51 V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~d 125 (216)
|-||.+|| ....+.+.+++.++ ..+.|. .+.+.+.+.+|++.. |++++ +
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~----------------------~v~~~~~a~~~~v~~vPti~i----~ 56 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFE----------------------KVTDMNEILEAGVTATPGVAV----D 56 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEE----------------------EeCCHHHHHHcCCCcCCEEEE----C
Confidence 45677886 45566788888887 456666 444566688899886 99999 2
Q ss_pred CCcccccCCCCCHHHHHHHHh
Q psy7942 126 EGRVNYEGPASDEAALRKFLS 146 (216)
Q Consensus 126 e~~~~y~G~~~~~~~l~~fi~ 146 (216)
+ ...+.|...+.+.|.++++
T Consensus 57 G-~~~~~G~~~~~~~l~~~l~ 76 (76)
T TIGR00412 57 G-ELVIMGKIPSKEEIKEILK 76 (76)
T ss_pred C-EEEEEeccCCHHHHHHHhC
Confidence 3 3347885326678888763
No 95
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=95.82 E-value=0.029 Score=40.20 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=47.4
Q ss_pred CceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 151 PLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 151 P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
|.+.+++.+++.......-.+.++.|+..+.+....+...+.++|+++++.+.|..+|...
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~ 61 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK 61 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 4577889888887654432344556888888888999999999999999889888887654
No 96
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.64 E-value=0.071 Score=45.55 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=59.9
Q ss_pred ceeecCHHHHHHhHhC---CCeEEEEEecCC---ChhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942 30 AKEFTSVDEIKAFIAD---SKVVVAGLFKDA---SSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST 103 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~---~~v~~V~f~~~~---~~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~ 103 (216)
+..|.+.+.+-+.+.. ...+||-+|.+. |..+...+..+|.+|+.+.|. +|. ++
T Consensus 127 v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFv--------------kI~-----a~- 186 (265)
T PF02114_consen 127 VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFV--------------KIR-----AS- 186 (265)
T ss_dssp EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEE--------------EEE-----EC-
T ss_pred EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEE--------------EEe-----hh-
Confidence 5677777777666643 345778888774 456677899999999999997 221 11
Q ss_pred cHHHHHhcCCCC-CeEEEEecCCC--Ccccc---cC-CCCCHHHHHHHHhhcC
Q psy7942 104 NADILAEYSVDD-DTVAIFKKFDE--GRVNY---EG-PASDEAALRKFLSTQS 149 (216)
Q Consensus 104 ~~~v~~~~~v~~-p~i~~~~~~de--~~~~y---~G-~~~~~~~l~~fi~~~~ 149 (216)
.-.+...|.... |+|++|+.++- ..+.+ -| ++ +..+|+.|+..+.
T Consensus 187 ~~~~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df-~~~dlE~~L~~~G 238 (265)
T PF02114_consen 187 KCPASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDF-FTEDLEAFLIEYG 238 (265)
T ss_dssp GCCTTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT---HHHHHHHHHTTT
T ss_pred ccCcccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCC-CHHHHHHHHHHcC
Confidence 111456677664 99999996531 11111 12 56 8899999999875
No 97
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=95.63 E-value=0.041 Score=38.75 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=48.5
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQPK 212 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~~ 212 (216)
|..+|.+++.......-...++.|+....+....+...+.++|+++.+++.|..+|....
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 60 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN 60 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc
Confidence 457888999887776324556668888888889999999999999999999999887643
No 98
>KOG0914|consensus
Probab=95.30 E-value=0.041 Score=45.47 Aligned_cols=78 Identities=24% Similarity=0.295 Sum_probs=59.9
Q ss_pred ceeecCHHHHHHhHhC--CCeEEEEEecCCChh---HHHHHHHHHhhC--CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942 30 AKEFTSVDEIKAFIAD--SKVVVAGLFKDASSE---LAKTFNEIASKV--DDLVFDASSELAKTFNEIASKVDDLVFVTS 102 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~~---~~~~f~~~A~~~--~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t 102 (216)
++.+++.+.++.-+.. +...+|-||+.|+.+ -.+.|-+++.++ +.+.|| +|| .-
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFG--------------kvD-----iG 186 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFG--------------KVD-----IG 186 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCccc--------------cee-----ec
Confidence 5678777777766653 567899999988643 357899999888 789999 677 55
Q ss_pred ccHHHHHhcCCC-------CCeEEEEecCCC
Q psy7942 103 TNADILAEYSVD-------DDTVAIFKKFDE 126 (216)
Q Consensus 103 ~~~~v~~~~~v~-------~p~i~~~~~~de 126 (216)
.=++++++|+++ .||+.+|+++.|
T Consensus 187 rfpd~a~kfris~s~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 187 RFPDVAAKFRISLSPGSRQLPTYILFQKGKE 217 (265)
T ss_pred cCcChHHheeeccCcccccCCeEEEEccchh
Confidence 557788999876 499999997543
No 99
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.24 E-value=0.12 Score=48.49 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=67.7
Q ss_pred eecCHHHHHHhHhCCC--eEEEEEecCCCh--hHHH--HHHHH--HhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942 32 EFTSVDEIKAFIADSK--VVVAGLFKDASS--ELAK--TFNEI--ASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST 103 (216)
Q Consensus 32 ~l~s~~~~~~~~~~~~--v~~V~f~~~~~~--~~~~--~f~~~--A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~ 103 (216)
.+.+..+++..+.+++ ++++=||+|||- ++.+ +|.+. +.+.+++..- +.| .|.
T Consensus 458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlL--------------qaD-----vT~ 518 (569)
T COG4232 458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLL--------------QAD-----VTA 518 (569)
T ss_pred ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEE--------------Eee-----ecC
Confidence 4556568888888877 999999999982 2222 44322 2334566554 455 553
Q ss_pred -cH---HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 104 -NA---DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 104 -~~---~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
|+ ++.+++++-+ |++++|.+..+++..-.|-. +.+.+.+++++.
T Consensus 519 ~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~-~a~~~~~~l~~~ 567 (569)
T COG4232 519 NDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFL-TADAFLEHLERA 567 (569)
T ss_pred CCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCccee-cHHHHHHHHHHh
Confidence 33 4577888865 99999996555566688988 999999999764
No 100
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=94.99 E-value=0.2 Score=42.89 Aligned_cols=89 Identities=12% Similarity=0.036 Sum_probs=58.2
Q ss_pred CCeEEEEEecCCC---hhHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccccce---e-eecccHHHHHhcCCCC-C
Q psy7942 46 SKVVVAGLFKDAS---SELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLV---F-VTSTNADILAEYSVDD-D 116 (216)
Q Consensus 46 ~~v~~V~f~~~~~---~~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~---~-~~t~~~~v~~~~~v~~-p 116 (216)
.++++|.|+.+|| ....+.+.+++.++. .+.+. .+|+.- + ....+..+++++++.. |
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~V--------------svD~~~~~~fp~~~~d~~la~~~gV~~vP 231 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPV--------------SVDGGPLPGFPNARPDAGQAQQLKIRTVP 231 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEE--------------eCCCCccccCCcccCCHHHHHHcCCCcCC
Confidence 6789999999998 455678888888873 22222 122100 0 0112456889999986 9
Q ss_pred eEEEEecCCC-CcccccCCCCCHHHHHHHHhhcC
Q psy7942 117 TVAIFKKFDE-GRVNYEGPASDEAALRKFLSTQS 149 (216)
Q Consensus 117 ~i~~~~~~de-~~~~y~G~~~~~~~l~~fi~~~~ 149 (216)
+++++.+..+ -.....|.. +.+.|.+.|....
T Consensus 232 tl~Lv~~~~~~v~~v~~G~~-s~~eL~~~i~~~a 264 (271)
T TIGR02740 232 AVFLADPDPNQFTPIGFGVM-SADELVDRILLAA 264 (271)
T ss_pred eEEEEECCCCEEEEEEeCCC-CHHHHHHHHHHHh
Confidence 9999996322 233456888 8889988887543
No 101
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.99 E-value=0.27 Score=34.76 Aligned_cols=72 Identities=8% Similarity=0.111 Sum_probs=51.7
Q ss_pred CCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEE
Q psy7942 45 DSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAI 120 (216)
Q Consensus 45 ~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~ 120 (216)
++++-+..|..++| ......+.+++..++.+.|. .+| .+..++++++|++.. |++++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~--------------~vd-----~~~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHE--------------MID-----GALFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEE--------------EEE-----hHhCHHHHHHcCCccCCEEEE
Confidence 67777777887765 66677888888888888877 233 555678999999976 99975
Q ss_pred EecCCCCcccccCCCCCHHHH
Q psy7942 121 FKKFDEGRVNYEGPASDEAAL 141 (216)
Q Consensus 121 ~~~~de~~~~y~G~~~~~~~l 141 (216)
++ ...+.|.. +.+.+
T Consensus 72 ----dG-~~~~~G~~-~~~e~ 86 (89)
T cd03026 72 ----NG-ELFGFGRM-TLEEI 86 (89)
T ss_pred ----CC-EEEEeCCC-CHHHH
Confidence 22 45667865 55544
No 102
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=94.92 E-value=0.078 Score=38.07 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=44.8
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
+.+++.+++.......-.+.++.|+..+.....++...+.++|+++++.+.+..+|..
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~ 59 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCD 59 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecC
Confidence 5688988988876654234566688888888888999999999999988777666544
No 103
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=94.73 E-value=0.12 Score=38.40 Aligned_cols=60 Identities=8% Similarity=0.063 Sum_probs=47.2
Q ss_pred CceeeeCcchHHHh---hccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 151 PLVVEFNHETAQKI---FGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 151 P~v~~~~~~~~~~~---~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
+-|.+++.+|+.+. ...+ ...++.|+.++..++..+...+.++|+++++.+.|.-+|...
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~-~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~ 71 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDA-EVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW 71 (113)
T ss_pred CCeEEechhhhHHHHhcccCC-CEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence 45779999888765 2333 345666888888888999999999999999988888877653
No 104
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=94.72 E-value=0.11 Score=36.74 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=44.3
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
+.+++.+++........++.++.|..+..+....+...+.++|+++++++.+..+|..
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~ 59 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD 59 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc
Confidence 4678888887766544233566677777778888999999999999998888877754
No 105
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.60 E-value=1.3 Score=41.20 Aligned_cols=97 Identities=10% Similarity=0.064 Sum_probs=70.3
Q ss_pred CCeEEEEecCCCCcccccCCCCCHHHHHHHHhhc---CCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHH
Q psy7942 115 DDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ---SLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPV 191 (216)
Q Consensus 115 ~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~---~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l 191 (216)
.|++.+.++.+...+.|.|-. .-.++..||..- +-| -..++++....+-.-+.+..+.+|...+++.++...+.+
T Consensus 61 ~p~~~~~~~~~~~~i~f~g~P-~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~ 138 (517)
T PRK15317 61 KPSFSITRPGEDTGVRFAGIP-MGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQAL 138 (517)
T ss_pred CCEEEEEcCCccceEEEEecC-ccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHH
Confidence 499998875444568899977 666677776542 333 345566666666654445567889998888889999999
Q ss_pred HHHHHhccCceEEEEcCCCCCcc
Q psy7942 192 QTVAKDFREKEEQDEDDDQPKRD 214 (216)
Q Consensus 192 ~~vA~~~r~~~~f~~~d~~~~~~ 214 (216)
.++|..+. ++.+-++|.+...+
T Consensus 139 ~~~a~~~~-~i~~~~id~~~~~~ 160 (517)
T PRK15317 139 NLMAVLNP-NITHTMIDGALFQD 160 (517)
T ss_pred HHHHHhCC-CceEEEEEchhCHh
Confidence 99999876 78888888876644
No 106
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=94.60 E-value=0.3 Score=36.84 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=44.3
Q ss_pred CHHHHHHhHhCCCeEEEEEecCCChhHHH----HHH--HHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHH
Q psy7942 35 SVDEIKAFIADSKVVVAGLFKDASSELAK----TFN--EIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADI 107 (216)
Q Consensus 35 s~~~~~~~~~~~~v~~V~f~~~~~~~~~~----~f~--~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v 107 (216)
+.+.++...++++.++|.|+.+||..... +|. +++..+ .++.+. .+| .+..+++
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~V--------------kvD-----~~~~~~~ 64 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPI--------------KVD-----REERPDV 64 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEE--------------EEe-----CCcCcHH
Confidence 34667788888999999999999853321 243 344443 455444 333 4444455
Q ss_pred HH--------hcCCCC-CeEEEEec
Q psy7942 108 LA--------EYSVDD-DTVAIFKK 123 (216)
Q Consensus 108 ~~--------~~~v~~-p~i~~~~~ 123 (216)
++ .|++.+ |+++++.+
T Consensus 65 ~~~~~~~~~~~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 65 DKIYMNAAQAMTGQGGWPLNVFLTP 89 (124)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECC
Confidence 43 357776 99999986
No 107
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.10 E-value=0.46 Score=34.85 Aligned_cols=92 Identities=15% Similarity=0.263 Sum_probs=48.2
Q ss_pred eeecCHHHHHHhHhC--CCeEEEEEecCCC---hhHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942 31 KEFTSVDEIKAFIAD--SKVVVAGLFKDAS---SELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLVFVTSTN 104 (216)
Q Consensus 31 ~~l~s~~~~~~~~~~--~~v~~V~f~~~~~---~~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~ 104 (216)
+.|++.++++++++. ++.++|.=-...| ...+..|...+...+ ++.++. +| .+--...+
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~--------------l~-v~~~R~vS 66 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYY--------------LD-VIEYRPVS 66 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEE--------------EE-GGGGHHHH
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEE--------------EE-EEeCchhH
Confidence 368899999999986 6666664333335 344566766666553 366661 11 00001123
Q ss_pred HHHHHhcCCC--CCeEEEEecCCCCccccc---CCCCCHHHH
Q psy7942 105 ADILAEYSVD--DDTVAIFKKFDEGRVNYE---GPASDEAAL 141 (216)
Q Consensus 105 ~~v~~~~~v~--~p~i~~~~~~de~~~~y~---G~~~~~~~l 141 (216)
..+++++||. .|.++++++ +..+|+ ++. +.+.|
T Consensus 67 n~IAe~~~V~HeSPQ~ili~~---g~~v~~aSH~~I-t~~~l 104 (105)
T PF11009_consen 67 NAIAEDFGVKHESPQVILIKN---GKVVWHASHWDI-TAEAL 104 (105)
T ss_dssp HHHHHHHT----SSEEEEEET---TEEEEEEEGGG--SHHHH
T ss_pred HHHHHHhCCCcCCCcEEEEEC---CEEEEECccccC-CHHhc
Confidence 4578999998 499999995 356664 334 55544
No 108
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=94.07 E-value=0.75 Score=33.56 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=55.2
Q ss_pred CCCeEEEEEecCCChh---HHHHHHHHHhhCCCceEEecchhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC-CeEE
Q psy7942 45 DSKVVVAGLFKDASSE---LAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD-DTVA 119 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~~---~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~-p~i~ 119 (216)
..++++|.|+.++|.. ..+.+..++..+..+.+....+....+...+.+.+- .-++...+..+++.|++.. |+++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~ 98 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIV 98 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEE
Confidence 4478888888888743 334555555554322232212223334444433321 1222344567899999986 9999
Q ss_pred EEecCCCCcccccCCCCCHHHHH
Q psy7942 120 IFKKFDEGRVNYEGPASDEAALR 142 (216)
Q Consensus 120 ~~~~~de~~~~y~G~~~~~~~l~ 142 (216)
++.+.. ....+.|-. +.+.|.
T Consensus 99 vid~~g-i~~~~~g~~-~~~~~~ 119 (123)
T cd03011 99 IVDPGG-IVFVTTGVT-SEWGLR 119 (123)
T ss_pred EEcCCC-eEEEEeccC-CHHHHH
Confidence 998643 444567777 777664
No 109
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.03 E-value=0.67 Score=43.38 Aligned_cols=104 Identities=12% Similarity=0.128 Sum_probs=66.2
Q ss_pred HhCCCeEEEEEecCCCh---hHHHHHHHHHhhC--CCceE-Eec------chhhHHHHhhhhccc--cceeeecccHHHH
Q psy7942 43 IADSKVVVAGLFKDASS---ELAKTFNEIASKV--DDLVF-DAS------SELAKTFNEIASKVD--DLVFVTSTNADIL 108 (216)
Q Consensus 43 ~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~--~~~~F-~~~------~~~~~~~~~~~~~~~--~~~~~~t~~~~v~ 108 (216)
++..++++|.|+++||. ...+.+.++++++ +++.| +++ ......+.+..+.++ ...++...+..++
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 34678999999999984 5566777777776 34443 222 112234444443332 1112234567789
Q ss_pred HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942 109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 109 ~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
+.|++.. |+++++-+...-...+.|.. +.+.|..+|..
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~-~~eeL~a~Ie~ 171 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSI-SEAQALALIRN 171 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCC-CHHHHHHHHHH
Confidence 9999986 99977654223234567988 89999999983
No 110
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=93.96 E-value=0.22 Score=35.11 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=44.7
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC--ceEEEEcCCCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE--KEEQDEDDDQP 211 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~--~~~f~~~d~~~ 211 (216)
|.+++..++.......-...++.|+.++.+.+..+...+.++|+.+++ ++.|..+|...
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA 62 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence 567888888776654323446668888888889999999999999987 57887777543
No 111
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=93.81 E-value=0.64 Score=34.28 Aligned_cols=90 Identities=24% Similarity=0.258 Sum_probs=53.8
Q ss_pred HHHHHhHhCCCeEEEEEec-----CCC-hhHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942 37 DEIKAFIADSKVVVAGLFK-----DAS-SELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL 108 (216)
Q Consensus 37 ~~~~~~~~~~~v~~V~f~~-----~~~-~~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~ 108 (216)
++...+. ..+++++++-. +.+ ......|.++|+.+. .+.|.. +| ......++
T Consensus 7 en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~--------------~D-----~~~~~~~l 66 (111)
T cd03073 7 DNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAV--------------AD-----KEDFSHEL 66 (111)
T ss_pred chHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEE--------------Ec-----HHHHHHHH
Confidence 4444443 55555555422 111 356779999999994 788872 22 22222367
Q ss_pred HhcCCC-----CCeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942 109 AEYSVD-----DDTVAIFKKFDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 109 ~~~~v~-----~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
+.+|++ .|++++... ++.....++++.+.++|.+|+..
T Consensus 67 ~~fgl~~~~~~~P~~~i~~~-~~~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 67 EEFGLDFSGGEKPVVAIRTA-KGKKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred HHcCCCcccCCCCEEEEEeC-CCCccCCCcccCCHHHHHHHHHH
Confidence 788876 488888774 22222235554367899999875
No 112
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=93.71 E-value=0.4 Score=31.26 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=37.5
Q ss_pred EEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEE
Q psy7942 49 VVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAI 120 (216)
Q Consensus 49 ~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~ 120 (216)
-++.|+.++| ....+.+.+++...+.+.|. .+| ...++++++++++.. |++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~--------------~id-----~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAE--------------MID-----AAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEE--------------EEE-----cccCHhHHHHcCCcccCEEEE
Confidence 3556777776 45556677777666678887 444 556688999999965 99876
No 113
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=93.51 E-value=0.85 Score=32.78 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=53.3
Q ss_pred CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCce-EEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeE
Q psy7942 45 DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLV-FDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTV 118 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~-F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i 118 (216)
+.++++|.|+.+||. ...+.+.+++..+ +.+. ++++......+++.+.+..-.-+-...+..+.+.|++.. |+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 467888889999874 4556777776665 3343 344444455666666555421010122456888888875 998
Q ss_pred EEEecCCCCcccccC
Q psy7942 119 AIFKKFDEGRVNYEG 133 (216)
Q Consensus 119 ~~~~~~de~~~~y~G 133 (216)
+++.+ ++.+.|.|
T Consensus 100 ~vid~--~G~v~~~~ 112 (114)
T cd02967 100 VLLDE--AGVIAAKG 112 (114)
T ss_pred EEECC--CCeEEecc
Confidence 88874 34666654
No 114
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.25 E-value=3.6 Score=38.25 Aligned_cols=96 Identities=7% Similarity=0.032 Sum_probs=69.6
Q ss_pred CCeEEEEecCCCCcccccCCCCCHHHHHHHHhh---cCCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHH
Q psy7942 115 DDTVAIFKKFDEGRVNYEGPASDEAALRKFLST---QSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPV 191 (216)
Q Consensus 115 ~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~---~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l 191 (216)
.|++.+.+......+.|.|-. .-.++..||.. .+-| -..++++....+-.-+.+.++.+|...+++.++...+.+
T Consensus 62 ~p~~~~~~~~~~~~i~f~g~P-~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~ 139 (515)
T TIGR03140 62 KPSFTILRDGADTGIRFAGIP-GGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQAL 139 (515)
T ss_pred CCeEEEecCCcccceEEEecC-CcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHH
Confidence 499988765444568899976 55566666654 3444 366777777766654445668889998888889999999
Q ss_pred HHHHHhccCceEEEEcCCCCCc
Q psy7942 192 QTVAKDFREKEEQDEDDDQPKR 213 (216)
Q Consensus 192 ~~vA~~~r~~~~f~~~d~~~~~ 213 (216)
.++|..+. ++..-++|.+.+-
T Consensus 140 ~~~a~~~p-~i~~~~id~~~~~ 160 (515)
T TIGR03140 140 NQMALLNP-NISHTMIDGALFQ 160 (515)
T ss_pred HHHHHhCC-CceEEEEEchhCH
Confidence 99999887 7888888877653
No 115
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=92.48 E-value=0.52 Score=33.11 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=44.4
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc--CceEEEEcCCCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR--EKEEQDEDDDQP 211 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r--~~~~f~~~d~~~ 211 (216)
+.+++.+++.........+.++.|.........++...+..++++++ +++.+..+|...
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 46778888887766542344666877777778889999999999997 568888887654
No 116
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=92.46 E-value=0.35 Score=34.03 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=44.6
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC---ceEEEEcCCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE---KEEQDEDDDQ 210 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~---~~~f~~~d~~ 210 (216)
+.+++.+++......+ +.++.|+.............+.++|+++++ ++.+..+|..
T Consensus 2 ~~~l~~~~f~~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~ 60 (102)
T cd03005 2 VLELTEDNFDHHIAEG--NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT 60 (102)
T ss_pred eeECCHHHHHHHhhcC--CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC
Confidence 5678888888777655 356668888888888899999999999987 6888887754
No 117
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=92.37 E-value=0.6 Score=34.62 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH-HHHHhc
Q psy7942 37 DEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA-DILAEY 111 (216)
Q Consensus 37 ~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~-~v~~~~ 111 (216)
+.++.....+++++|-|+++||. .+.+.|.+.+... ....|. .++ ...+. ...+.|
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv--------------~v~-----vd~~~~~~~~~~ 70 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFV--------------MVN-----LEDDEEPKDEEF 70 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEE--------------EEE-----ecCCCCchhhhc
Confidence 44555666789999999999984 4455666655432 222343 111 22222 345677
Q ss_pred CCC---CCeEEEEec
Q psy7942 112 SVD---DDTVAIFKK 123 (216)
Q Consensus 112 ~v~---~p~i~~~~~ 123 (216)
++. .|++++|.+
T Consensus 71 ~~~g~~vPt~~f~~~ 85 (117)
T cd02959 71 SPDGGYIPRILFLDP 85 (117)
T ss_pred ccCCCccceEEEECC
Confidence 775 499999974
No 118
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=92.36 E-value=0.38 Score=35.64 Aligned_cols=58 Identities=7% Similarity=-0.032 Sum_probs=43.2
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEeC--CccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFSK--AAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~~--~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
.++++..|+....+.+ ...++.|... ..+++..+...|.++|++|.+++.|+.+|...
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~ 71 (111)
T cd02965 12 WPRVDAATLDDWLAAG-GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD 71 (111)
T ss_pred CcccccccHHHHHhCC-CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC
Confidence 3467777777766665 3456667665 36788899999999999999998887776543
No 119
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=92.33 E-value=0.44 Score=34.29 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=43.3
Q ss_pred ceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc------CceEEEEcCCC
Q psy7942 152 LVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR------EKEEQDEDDDQ 210 (216)
Q Consensus 152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r------~~~~f~~~d~~ 210 (216)
-+.+++.+++...++.+ +..++.|+.+.......+...+.++|+.++ +++.|..+|-.
T Consensus 2 ~v~~l~~~~f~~~i~~~-~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d 65 (108)
T cd02996 2 EIVSLTSGNIDDILQSA-ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD 65 (108)
T ss_pred ceEEcCHhhHHHHHhcC-CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC
Confidence 36788999998888665 444556888888888888999999998763 35777777644
No 120
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=92.18 E-value=3.3 Score=33.22 Aligned_cols=101 Identities=12% Similarity=0.107 Sum_probs=60.4
Q ss_pred CCCeEEEEEecCCChhH---HHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEE
Q psy7942 45 DSKVVVAGLFKDASSEL---AKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVA 119 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~ 119 (216)
.+++++|.|+.+||... .+.+.++.++. .++. +++....+...+.+.+..-.......+.++.+.|++.. |+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv-~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVV-MISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEE-EEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 45788889999998544 45555555444 2333 34444444444444443211011234678889999875 9877
Q ss_pred EEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 120 IFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 120 ~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
++-+ ++.+.+.|.....+.+.+++...
T Consensus 152 lID~--~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 152 LLDQ--DGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EECC--CCeEEEccCCCCHHHHHHHHHHH
Confidence 7664 34667777654667788887643
No 121
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=92.00 E-value=0.38 Score=33.62 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=41.2
Q ss_pred eCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC--ceEEEEcCCC
Q psy7942 156 FNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE--KEEQDEDDDQ 210 (216)
Q Consensus 156 ~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~--~~~f~~~d~~ 210 (216)
++.+++......+ ++.++.|..++......+...+.++|+.+.+ ++.+..+|..
T Consensus 1 l~~~~~~~~~~~~-~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 56 (102)
T TIGR01126 1 LTASNFDDIVLSN-KDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT 56 (102)
T ss_pred CchhhHHHHhccC-CcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc
Confidence 3556777766644 3556778888887788888999999999987 6888887764
No 122
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=91.84 E-value=0.45 Score=33.08 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=39.2
Q ss_pred CcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 157 NHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 157 ~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
+.+++...........++.|...+..........++++++++.+++.|+.+|...
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 56 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE 56 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC
Confidence 3445555444432345666777777777888899999999999889999988643
No 123
>PRK09381 trxA thioredoxin; Provisional
Probab=91.75 E-value=0.58 Score=33.62 Aligned_cols=58 Identities=9% Similarity=0.216 Sum_probs=43.3
Q ss_pred ceeeeCcchHHH-hhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 152 LVVEFNHETAQK-IFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 152 ~v~~~~~~~~~~-~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
-+.+++.+++.. +...+ .+.++.|..++.+........++++|+++++++.+..+|..
T Consensus 4 ~v~~~~~~~~~~~v~~~~-~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~ 62 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKAD-GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 62 (109)
T ss_pred cceeeChhhHHHHHhcCC-CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECC
Confidence 356777777764 44444 34566688888888889999999999999998877777654
No 124
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=91.39 E-value=0.68 Score=33.51 Aligned_cols=57 Identities=11% Similarity=0.159 Sum_probs=43.4
Q ss_pred eeeeCcchHHHhhc---cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCc-eEEEEcCCC
Q psy7942 153 VVEFNHETAQKIFG---GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK-EEQDEDDDQ 210 (216)
Q Consensus 153 v~~~~~~~~~~~~~---~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~-~~f~~~d~~ 210 (216)
|.+++.+++..+.. .+ ++.++.|+.++.+...++...+.++|+.++++ +.+..+|..
T Consensus 3 v~~~~~~~~~~~~~~~~~~-k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d 63 (109)
T cd02993 3 VVTLSRAEIEALAKGERRN-QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD 63 (109)
T ss_pred ceeccHHHHHHHHhhhhcC-CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence 67888888877763 23 34566688888888899999999999999975 777776654
No 125
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=91.28 E-value=0.79 Score=33.42 Aligned_cols=59 Identities=8% Similarity=0.038 Sum_probs=42.7
Q ss_pred CceeeeCcchHHHhhccCC--cceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 151 PLVVEFNHETAQKIFGGEI--KSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 151 P~v~~~~~~~~~~~~~~~~--~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
..+.+++++++........ .+.++.|+.++.+.+..+...++++|++|.+ +.|+.+|..
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~ 64 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAE 64 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEch
Confidence 3567788777766554321 2445568888888888999999999999974 778887754
No 126
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=91.08 E-value=3.3 Score=32.03 Aligned_cols=102 Identities=14% Similarity=0.166 Sum_probs=63.3
Q ss_pred CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceE-Ee-cchhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC-
Q psy7942 45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVF-DA-SSELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD- 115 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F-~~-~~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~- 115 (216)
.++.++|.|+.++|. .....+.++++++. .+.+ ++ ++.....+.+...+.+- ...+...+..+.+.|++..
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 467788889988874 34567777777762 2322 21 22333344444433322 1222344567889999986
Q ss_pred CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942 116 DTVAIFKKFDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 116 p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
|+++++.+...-...+.|.. +.+.+.+++..
T Consensus 140 P~~~lid~~g~i~~~~~g~~-~~~~l~~~l~~ 170 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEM-TEEQLEEYLEK 170 (173)
T ss_pred CeEEEECCCCcEEEEEeCCC-CHHHHHHHHHH
Confidence 99988876333334678888 88889998865
No 127
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=91.02 E-value=1.1 Score=32.07 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=27.6
Q ss_pred cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942 102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi 145 (216)
+.+++++..+++.+ |+++++.+.......+.|-. +.+.|.+++
T Consensus 69 ~~~~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~-~~~~l~~~L 112 (112)
T PF13098_consen 69 LSNKELAQRYGVNGTPTIVFLDKDGKIVYRIPGYL-SPEELLKML 112 (112)
T ss_dssp HHHHHHHHHTT--SSSEEEECTTTSCEEEEEESS---HHHHHHHH
T ss_pred HHHHHHHHHcCCCccCEEEEEcCCCCEEEEecCCC-CHHHHHhhC
Confidence 34567899999987 99999874222233468888 888888764
No 128
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=90.65 E-value=4 Score=29.94 Aligned_cols=95 Identities=7% Similarity=0.039 Sum_probs=52.5
Q ss_pred CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCce-EEec-chhhHHHHhhhhcccc-c-eeeecccHHHHHhcCCCC-C
Q psy7942 45 DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLV-FDAS-SELAKTFNEIASKVDD-L-VFVTSTNADILAEYSVDD-D 116 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~-F~~~-~~~~~~~~~~~~~~~~-~-~~~~t~~~~v~~~~~v~~-p 116 (216)
.+++++|.|+..||. ...+.+.+++++++ +. ++++ ......+.+++.+..- . ......+..++..|++.. |
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 367889999999984 34556666666553 32 3333 2333444444433221 1 111334567888899876 9
Q ss_pred eEEEEecCCCCcccccCCCCCHHHH
Q psy7942 117 TVAIFKKFDEGRVNYEGPASDEAAL 141 (216)
Q Consensus 117 ~i~~~~~~de~~~~y~G~~~~~~~l 141 (216)
+.+++.+...-...+.|.. +.+.|
T Consensus 103 ~~~~ld~~G~v~~~~~G~~-~~~~~ 126 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPL-TPEVW 126 (127)
T ss_pred eEEEECCCceEEEEEeccC-ChHhc
Confidence 6666653222234567877 65543
No 129
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=90.39 E-value=1 Score=31.57 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=43.6
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc--CceEEEEcCCCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR--EKEEQDEDDDQP 211 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r--~~~~f~~~d~~~ 211 (216)
+.++++.++......+ ++.++.|...+..........+..+++.+. +.+.+..+|...
T Consensus 2 ~~~l~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 61 (104)
T cd02997 2 VVHLTDEDFRKFLKKE-KHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK 61 (104)
T ss_pred eEEechHhHHHHHhhC-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC
Confidence 4677777887777665 355667888888778888999999999987 557777666553
No 130
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=90.20 E-value=0.9 Score=33.36 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=42.7
Q ss_pred ceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC---ceEEEEcC
Q psy7942 152 LVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE---KEEQDEDD 208 (216)
Q Consensus 152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~---~~~f~~~d 208 (216)
.+.+++..++......+..+.++.|+..+.+....+...+.++|+++++ .+.|..+|
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd 61 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD 61 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEe
Confidence 3678888888877665433455568888887788899999999998764 57777666
No 131
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=90.20 E-value=0.87 Score=31.24 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=41.9
Q ss_pred eeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhc--cCceEEEEcCCC
Q psy7942 155 EFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF--REKEEQDEDDDQ 210 (216)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~--r~~~~f~~~d~~ 210 (216)
+++..++......+ ++.++.|...+.+.+.++...++++|+.+ ++.+.|..+|..
T Consensus 2 ~l~~~~~~~~i~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 58 (101)
T cd02961 2 ELTDDNFDELVKDS-KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT 58 (101)
T ss_pred cccHHHHHHHHhCC-CcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc
Confidence 45666777777665 34566687777777888999999999999 578888888754
No 132
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=90.03 E-value=5.3 Score=31.39 Aligned_cols=101 Identities=10% Similarity=0.118 Sum_probs=56.3
Q ss_pred CCCeEEEEEecCCChhH---HHHHHHHHhhCCCc-eEEecc-hhhHHHHhhhhcccc-c-eeeecccHHHHHhcCCCC-C
Q psy7942 45 DSKVVVAGLFKDASSEL---AKTFNEIASKVDDL-VFDASS-ELAKTFNEIASKVDD-L-VFVTSTNADILAEYSVDD-D 116 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~~~~-~F~~~~-~~~~~~~~~~~~~~~-~-~~~~t~~~~v~~~~~v~~-p 116 (216)
.+++++|.|+.+||... .+.+.+++.+ .+ ..+++- ...+...+.+.+... . +.....+..+...|++.. |
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 57899999999998543 3445444443 22 233331 122222233333221 1 111334557888899876 9
Q ss_pred eEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 117 TVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 117 ~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
+.+++.+...-...+.|.. +.+.+.+++...
T Consensus 140 ~~~~id~~G~i~~~~~G~~-~~~~l~~~l~~~ 170 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPL-NNEVWTEGFLPA 170 (173)
T ss_pred eEEEEcCCceEEEEEeccC-CHHHHHHHHHHH
Confidence 7766654222233456888 889999988753
No 133
>PRK10996 thioredoxin 2; Provisional
Probab=89.99 E-value=0.93 Score=34.56 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=43.2
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
+.+++.+++..+...+ +..++.|...+.+........|.++++++.+++.|+.+|..
T Consensus 37 ~i~~~~~~~~~~i~~~-k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~ 93 (139)
T PRK10996 37 VINATGETLDKLLQDD-LPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE 93 (139)
T ss_pred CEEcCHHHHHHHHhCC-CeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 3356667777776655 34466688877777888889999999999999999888754
No 134
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=0.81 Score=39.62 Aligned_cols=59 Identities=10% Similarity=0.216 Sum_probs=44.6
Q ss_pred CCceeeeCcchHHH-hhccCCcce-EEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcC
Q psy7942 150 LPLVVEFNHETAQK-IFGGEIKSH-LLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDD 208 (216)
Q Consensus 150 ~P~v~~~~~~~~~~-~~~~~~~~~-lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d 208 (216)
.|.+.++|..|+.. +.......+ ++.|..+.++.+.++...|.+++.+|+|++....+|
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN 82 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVN 82 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEec
Confidence 45588899888864 444333334 445888888889999999999999999998776554
No 135
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=88.93 E-value=8.3 Score=30.66 Aligned_cols=100 Identities=6% Similarity=0.049 Sum_probs=55.6
Q ss_pred CCCeEEEEEecCCChhH---HHHHHHHHhhCCCce-EEec-chhhHHHHhhhhcccc-c-eeeecccHHHHHhcCCCC-C
Q psy7942 45 DSKVVVAGLFKDASSEL---AKTFNEIASKVDDLV-FDAS-SELAKTFNEIASKVDD-L-VFVTSTNADILAEYSVDD-D 116 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~~~~~-F~~~-~~~~~~~~~~~~~~~~-~-~~~~t~~~~v~~~~~v~~-p 116 (216)
..++++|.|+..||... .+.+.+++.+ .+. .+++ ++......+...+... . +.....+..+...|++.. |
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 57889999999998544 4455555432 222 2333 2221222222222221 1 112333455777899876 9
Q ss_pred eEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942 117 TVAIFKKFDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 117 ~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
+..++-+...-...+.|.. +.+.+.++|..
T Consensus 145 ~t~vid~~G~i~~~~~G~~-~~~~l~~~i~~ 174 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDL-NPRVWESEIKP 174 (185)
T ss_pred eEEEECCCceEEEEEecCC-CHHHHHHHHHH
Confidence 7777664223244567888 88888888765
No 136
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=88.80 E-value=1.9 Score=31.66 Aligned_cols=58 Identities=10% Similarity=0.024 Sum_probs=42.5
Q ss_pred ceeeeCc-chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 152 LVVEFNH-ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 152 ~v~~~~~-~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
.+.+++. +.+......+ ...++.|+.++.+.+..+...+.++|++|.+ +.|+.+|...
T Consensus 5 ~v~~i~~~~~~~~~i~~~-~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~ 63 (113)
T cd02989 5 KYREVSDEKEFFEIVKSS-ERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEK 63 (113)
T ss_pred CeEEeCCHHHHHHHHhCC-CcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEccc
Confidence 4556665 5666665554 3456668888878888899999999999975 7888888654
No 137
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=88.63 E-value=1.5 Score=30.87 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=43.5
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC-ceEEEEcCCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE-KEEQDEDDDQ 210 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~-~~~f~~~d~~ 210 (216)
|.+++.+++..+..+. .++.|+.+..+........+.++|+.+++ ++.+..+|..
T Consensus 3 v~~l~~~~f~~~~~~~---~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~ 58 (101)
T cd02994 3 VVELTDSNWTLVLEGE---WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT 58 (101)
T ss_pred eEEcChhhHHHHhCCC---EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc
Confidence 6788999998877542 46678888888888899999999998875 4888777654
No 138
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=88.52 E-value=7.6 Score=28.12 Aligned_cols=90 Identities=16% Similarity=0.213 Sum_probs=51.8
Q ss_pred HHHHhHhCCCeEEEEEecCCChhHH----HHH--HHHHhhC-CCceEEecchhhHHHHhhhhccccceeeec--ccHHHH
Q psy7942 38 EIKAFIADSKVVVAGLFKDASSELA----KTF--NEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTS--TNADIL 108 (216)
Q Consensus 38 ~~~~~~~~~~v~~V~f~~~~~~~~~----~~f--~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~v~ 108 (216)
.++...+.++.++|.+..++|.... ..| .++.+.+ .++.+. .+| .+ ....++
T Consensus 9 a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~--------------~~d-----~~~~e~~~~~ 69 (114)
T cd02958 9 AKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFW--------------QCD-----IDSSEGQRFL 69 (114)
T ss_pred HHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEE--------------Eec-----CCCccHHHHH
Confidence 3344556789999999988873221 122 1122222 233322 111 11 233577
Q ss_pred HhcCCCC-CeEEEEecC-CCCcccccCCCCCHHHHHHHHhh
Q psy7942 109 AEYSVDD-DTVAIFKKF-DEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 109 ~~~~v~~-p~i~~~~~~-de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
..|++.. |+++++.+. .+....+.|.. +.+.+.+-++.
T Consensus 70 ~~~~~~~~P~~~~i~~~~g~~l~~~~G~~-~~~~f~~~L~~ 109 (114)
T cd02958 70 QSYKVDKYPHIAIIDPRTGEVLKVWSGNI-TPEDLLSQLIE 109 (114)
T ss_pred HHhCccCCCeEEEEeCccCcEeEEEcCCC-CHHHHHHHHHH
Confidence 8888876 999999863 33344567888 77777766554
No 139
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=87.97 E-value=4.7 Score=29.76 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=44.0
Q ss_pred CCCeEEEEEecCCCh---hHHHHHHHHHhhC-C---Cce--EEecchhhHHHHhhhhccccceee---e-cccHHHHHhc
Q psy7942 45 DSKVVVAGLFKDASS---ELAKTFNEIASKV-D---DLV--FDASSELAKTFNEIASKVDDLVFV---T-STNADILAEY 111 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~---~~~--F~~~~~~~~~~~~~~~~~~~~~~~---~-t~~~~v~~~~ 111 (216)
.+++++|.|+.+||. ...+.+.++..++ + .+. +..-+...+.|.+...+..- ..+ . ..+..+++.|
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPW-LAVPFSDRERRSRLNRTF 95 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCe-eEcccCCHHHHHHHHHHc
Confidence 467899999999974 3445566555554 1 222 22112233455544443321 000 0 1124678899
Q ss_pred CCCC-CeEEEEec
Q psy7942 112 SVDD-DTVAIFKK 123 (216)
Q Consensus 112 ~v~~-p~i~~~~~ 123 (216)
++.. |+++++.+
T Consensus 96 ~v~~~P~~~lid~ 108 (131)
T cd03009 96 KIEGIPTLIILDA 108 (131)
T ss_pred CCCCCCEEEEECC
Confidence 9986 99999975
No 140
>KOG2603|consensus
Probab=87.48 E-value=7.5 Score=34.00 Aligned_cols=105 Identities=10% Similarity=0.232 Sum_probs=71.0
Q ss_pred hhCCCceeecCHHHHHHhHhC--CCeEEEEEecCC--------ChhHHHHHHHHHhhC-C--------CceEEecchhhH
Q psy7942 25 KTGPPAKEFTSVDEIKAFIAD--SKVVVAGLFKDA--------SSELAKTFNEIASKV-D--------DLVFDASSELAK 85 (216)
Q Consensus 25 ~~~~~v~~l~s~~~~~~~~~~--~~v~~V~f~~~~--------~~~~~~~f~~~A~~~-~--------~~~F~~~~~~~~ 85 (216)
.....|..++ .+.+.+|+.. .+..+|.+|.-. |.+..++|.-+|..+ . .+.|+
T Consensus 37 ts~~~VI~~n-~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~------- 108 (331)
T KOG2603|consen 37 TSESGVIRMN-DDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFC------- 108 (331)
T ss_pred cCCCCeEEec-CcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEE-------
Confidence 3345677786 4788999885 455666666432 356779999999865 1 23455
Q ss_pred HHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCC---cccccC---CCCCHHHHHHHHhhcCC
Q psy7942 86 TFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEG---RVNYEG---PASDEAALRKFLSTQSL 150 (216)
Q Consensus 86 ~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~---~~~y~G---~~~~~~~l~~fi~~~~~ 150 (216)
.|| ....+++.+.+++.. |.+++|++-.++ ...+++ .+ +.+.+.+|+...+-
T Consensus 109 -------~Vd-----~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~-~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 109 -------MVD-----YDESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGF-EAEQIAQFVADRTK 167 (331)
T ss_pred -------EEe-----ccccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcch-hHHHHHHHHHHhhh
Confidence 455 667788999999875 999999754322 223332 23 68999999988653
No 141
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=87.45 E-value=1.7 Score=33.93 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=43.4
Q ss_pred ceeeeCcchHHHhhccCC-cceEEEEEeCCccchhhhhHHHHHHHHhccC-ceEEEEcCCC
Q psy7942 152 LVVEFNHETAQKIFGGEI-KSHLLVFFSKAAGHYESHFEPVQTVAKDFRE-KEEQDEDDDQ 210 (216)
Q Consensus 152 ~v~~~~~~~~~~~~~~~~-~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~-~~~f~~~d~~ 210 (216)
.+.+++.+++......+. .+.++.|+.++.+........+.++|+++.+ ++.|+.+|-.
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd 89 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG 89 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC
Confidence 466777777776554321 2345558888888889999999999999985 4888888854
No 142
>KOG1672|consensus
Probab=86.74 E-value=3.2 Score=33.84 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=54.5
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCC---ChhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDA---SSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~---~~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 106 (216)
...+.|..++-.......-+++-||.+. |...-+-+..+|.++-+..|. .|+ +-.-|=
T Consensus 68 y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFi--------------kvn-----ae~~PF 128 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFI--------------KVN-----AEKAPF 128 (211)
T ss_pred EEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEE--------------EEe-----cccCce
Confidence 4677777777777766666777777664 566677888899999777887 332 223344
Q ss_pred HHHhcCCCC-CeEEEEecC
Q psy7942 107 ILAEYSVDD-DTVAIFKKF 124 (216)
Q Consensus 107 v~~~~~v~~-p~i~~~~~~ 124 (216)
++.+++++. |+|++|++.
T Consensus 129 lv~kL~IkVLP~v~l~k~g 147 (211)
T KOG1672|consen 129 LVTKLNIKVLPTVALFKNG 147 (211)
T ss_pred eeeeeeeeEeeeEEEEEcC
Confidence 567788874 999999963
No 143
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=86.07 E-value=2.3 Score=31.63 Aligned_cols=41 Identities=12% Similarity=-0.099 Sum_probs=33.4
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
+.++-|.....+.+..+...|.++|.+|.+.+.|+.+|-..
T Consensus 16 ~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~ 56 (114)
T cd02954 16 VVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE 56 (114)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC
Confidence 34555888888888899999999999999988888777543
No 144
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=85.96 E-value=11 Score=27.95 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=44.7
Q ss_pred CCCeEEEEEecCCCh---hHHHHHHHHHhhC-C---Cc--eEEecchhhHHHHhhhhccccceeeecc----cHHHHHhc
Q psy7942 45 DSKVVVAGLFKDASS---ELAKTFNEIASKV-D---DL--VFDASSELAKTFNEIASKVDDLVFVTST----NADILAEY 111 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~---~~--~F~~~~~~~~~~~~~~~~~~~~~~~~t~----~~~v~~~~ 111 (216)
.+++++|.|+..||. ...+.+.++++++ + .+ .+...++....+...+.+......+... ...+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 468999999999984 4455666666655 2 22 2222233334444444444311111111 23567779
Q ss_pred CCCC-CeEEEEec
Q psy7942 112 SVDD-DTVAIFKK 123 (216)
Q Consensus 112 ~v~~-p~i~~~~~ 123 (216)
++.. |+++++.+
T Consensus 96 ~v~~iPt~~lid~ 108 (132)
T cd02964 96 KVEGIPTLVVLKP 108 (132)
T ss_pred CCCCCCEEEEECC
Confidence 9886 99999875
No 145
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=85.90 E-value=2.4 Score=30.97 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=38.8
Q ss_pred ceeeeCc-chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 152 LVVEFNH-ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 152 ~v~~~~~-~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
++..++. ..+.+++... ...+++|. .+..+....+..++.+|++-+|.=+.+|+|-..
T Consensus 2 ~ie~i~d~KdfKKLLRTr-~NVLvLy~-ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd 60 (112)
T cd03067 2 LIEDISDHKDFKKLLRTR-NNVLVLYS-KSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGD 60 (112)
T ss_pred ccccccchHHHHHHHhhc-CcEEEEEe-cchhhHHHHHHHHHHHHHHhcCceeEEEEecCC
Confidence 3444443 3566777764 33344454 444556788999999999999998777877543
No 146
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=85.65 E-value=12 Score=29.17 Aligned_cols=92 Identities=10% Similarity=0.136 Sum_probs=50.5
Q ss_pred CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecc--hhhHHHHhhhhccccceeeecccHHHH-Hhc---CCCC
Q psy7942 45 DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASS--ELAKTFNEIASKVDDLVFVTSTNADIL-AEY---SVDD 115 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~--~~~~~~~~~~~~~~~~~~~~t~~~~v~-~~~---~v~~ 115 (216)
..+..+|.|+.+||. .+.+.+.++++++..-..+++- ...+.|.. . ...+.... ..+ ++..
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~---------~-~~~~~~~~~~~~~~~~v~~ 118 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPD---------P-LPATPEVMQTFFPNPRPVV 118 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCccccccc---------c-cCCchHHHHHHhccCCCCC
Confidence 456679999999984 5566778888776311112110 00000000 0 11122333 344 5654
Q ss_pred -CeEEEEecCCCC-cccccCCCCCHHHHHHHHhh
Q psy7942 116 -DTVAIFKKFDEG-RVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 116 -p~i~~~~~~de~-~~~y~G~~~~~~~l~~fi~~ 147 (216)
|+.+++.+.... ...+.|.. +.+.|.+.|..
T Consensus 119 iPTt~LID~~G~~i~~~~~G~~-s~~~l~~~I~~ 151 (153)
T TIGR02738 119 TPATFLVNVNTRKAYPVLQGAV-DEAELANRMDE 151 (153)
T ss_pred CCeEEEEeCCCCEEEEEeeccc-CHHHHHHHHHH
Confidence 999999863232 23568988 88888887754
No 147
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=85.42 E-value=2.6 Score=35.07 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=46.2
Q ss_pred CceeeeCcchHHHhhccC----CcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 151 PLVVEFNHETAQKIFGGE----IKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 151 P~v~~~~~~~~~~~~~~~----~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
..+.+++.+++....... -.+.++.|+.++.++.......+.++|+++++.+.+..+|..
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~ 93 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT 93 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 457888988888765321 124466688888888889999999999999999888877754
No 148
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=85.39 E-value=2.7 Score=30.04 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=35.5
Q ss_pred chHHHhhccC-CcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 159 ETAQKIFGGE-IKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 159 ~~~~~~~~~~-~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
+.+...+... -++.++.|..++..........|.++|++| +.+.|+.+|..
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d 55 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGD 55 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECC
Confidence 3444444432 134455588888877888899999999999 67888877754
No 149
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=85.16 E-value=3.3 Score=28.71 Aligned_cols=41 Identities=5% Similarity=0.118 Sum_probs=34.0
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
+.++.|..++..........+.++++++.+.+.+..+|...
T Consensus 14 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~ 54 (96)
T cd02956 14 PVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA 54 (96)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC
Confidence 45666888888888899999999999999888888887654
No 150
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=85.12 E-value=2.9 Score=29.37 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=36.1
Q ss_pred HHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 162 QKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 162 ~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
...+..+-++.++.|..............+.++++++.+++.+..+|..
T Consensus 6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d 54 (97)
T cd02949 6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID 54 (97)
T ss_pred HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC
Confidence 3344444344455677777777788889999999999988888888864
No 151
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=85.09 E-value=5.1 Score=27.74 Aligned_cols=78 Identities=12% Similarity=0.197 Sum_probs=43.5
Q ss_pred CCeEEEEEecCCCh---hHHHHHHHHHhhC--CCceEEe--cch-hhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC-
Q psy7942 46 SKVVVAGLFKDASS---ELAKTFNEIASKV--DDLVFDA--SSE-LAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD- 115 (216)
Q Consensus 46 ~~v~~V~f~~~~~~---~~~~~f~~~A~~~--~~~~F~~--~~~-~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~- 115 (216)
++.++|.|+..||. ...+.+.++..++ +++.+.. ++. ....+.+.+++..- ..+....+..+.+.|++..
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 67888888888863 4455666666666 4454431 111 14444444444421 1111223456778888754
Q ss_pred CeEEEEec
Q psy7942 116 DTVAIFKK 123 (216)
Q Consensus 116 p~i~~~~~ 123 (216)
|+++++.+
T Consensus 99 P~~~l~d~ 106 (116)
T cd02966 99 PTTFLIDR 106 (116)
T ss_pred ceEEEECC
Confidence 88887764
No 152
>PF13728 TraF: F plasmid transfer operon protein
Probab=84.91 E-value=11 Score=30.97 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=51.8
Q ss_pred CCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccc---eee-ecccHHHHHhcCCCC-C
Q psy7942 45 DSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDL---VFV-TSTNADILAEYSVDD-D 116 (216)
Q Consensus 45 ~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~---~~~-~t~~~~v~~~~~v~~-p 116 (216)
.++..++.||.+.| ....+....++.++.--.+++ .+|.. .+- ...++.+++++++.. |
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~v-------------s~DG~~~~~fp~~~~~~g~~~~l~v~~~P 185 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPV-------------SLDGRPIPSFPNPRPDPGQAKRLGVKVTP 185 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEE-------------ecCCCCCcCCCCCCCCHHHHHHcCCCcCC
Confidence 37888999998876 455667777787762111221 12210 000 123678899999985 9
Q ss_pred eEEEEecCCC-CcccccCCCCCHHHHHH
Q psy7942 117 TVAIFKKFDE-GRVNYEGPASDEAALRK 143 (216)
Q Consensus 117 ~i~~~~~~de-~~~~y~G~~~~~~~l~~ 143 (216)
++++..+... -..+=.|-. +.+.|.+
T Consensus 186 al~Lv~~~~~~~~pv~~G~~-s~~~L~~ 212 (215)
T PF13728_consen 186 ALFLVNPNTKKWYPVSQGFM-SLDELED 212 (215)
T ss_pred EEEEEECCCCeEEEEeeecC-CHHHHHH
Confidence 9998886442 233346777 7777654
No 153
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=83.85 E-value=3.7 Score=28.41 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=37.1
Q ss_pred chHHHhhccC-CcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 159 ETAQKIFGGE-IKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 159 ~~~~~~~~~~-~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
+++....... -+..++.|...+..........|.++++++..++.|+.+|..
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~ 55 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE 55 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc
Confidence 3444444433 134455677777777788889999999998778999888865
No 154
>PTZ00051 thioredoxin; Provisional
Probab=83.58 E-value=4 Score=28.31 Aligned_cols=55 Identities=7% Similarity=0.059 Sum_probs=39.0
Q ss_pred eeeCc-chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 154 VEFNH-ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 154 ~~~~~-~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
.++++ +.+..+.+.+ +..++.|+..+......+...+.++++++.+ +.|+.+|..
T Consensus 3 ~~i~~~~~~~~~~~~~-~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~ 58 (98)
T PTZ00051 3 HIVTSQAEFESTLSQN-ELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVD 58 (98)
T ss_pred EEecCHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECc
Confidence 44543 4566666654 3456668888877788888999999998864 778777754
No 155
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=83.33 E-value=2.9 Score=38.60 Aligned_cols=58 Identities=9% Similarity=0.098 Sum_probs=44.4
Q ss_pred CceeeeCcchHHHhhc--cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCc-eEEEEcC
Q psy7942 151 PLVVEFNHETAQKIFG--GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK-EEQDEDD 208 (216)
Q Consensus 151 P~v~~~~~~~~~~~~~--~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~-~~f~~~d 208 (216)
+.|.++|.+|+..+.. ..-.+.++.|+.+.+..+..+...+.++|++|+++ +.|..+|
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVd 411 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFR 411 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEE
Confidence 4788999999988764 22134455688888888899999999999999875 6665554
No 156
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=83.30 E-value=3.6 Score=29.29 Aligned_cols=53 Identities=6% Similarity=0.180 Sum_probs=38.1
Q ss_pred CcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCc-eEEEEcCCC
Q psy7942 157 NHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK-EEQDEDDDQ 210 (216)
Q Consensus 157 ~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~-~~f~~~d~~ 210 (216)
|.+++..+...+ ++.++.|...+.+.+......|.++++++.+. +.|..+|..
T Consensus 6 ~~~~~~~~i~~~-~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 6 NQEEWEELLSNK-GLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred CHHHHHHHHccC-CeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 345566666554 34456688888888888999999999999864 667766543
No 157
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=83.30 E-value=3.8 Score=30.14 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=47.3
Q ss_pred eeecCHHHHHHhHhCCCeEEEEEecCC-----ChhHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942 31 KEFTSVDEIKAFIADSKVVVAGLFKDA-----SSELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLVFVTSTN 104 (216)
Q Consensus 31 ~~l~s~~~~~~~~~~~~v~~V~f~~~~-----~~~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~ 104 (216)
..++ .+++++|+......++.|-.|. ..+..-..-++.+.++ ....++ ++ ...+
T Consensus 12 ~~vd-~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~av--------------v~-----~~~e 71 (107)
T PF07449_consen 12 PRVD-ADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAV--------------VA-----RAAE 71 (107)
T ss_dssp EEE--CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEE--------------EE-----HHHH
T ss_pred eeec-hhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEE--------------EC-----chhH
Confidence 4554 5778999998888888665543 2345557777777774 333331 00 2346
Q ss_pred HHHHHhcCCCC-CeEEEEec
Q psy7942 105 ADILAEYSVDD-DTVAIFKK 123 (216)
Q Consensus 105 ~~v~~~~~v~~-p~i~~~~~ 123 (216)
..+..+|++.. |+++++|.
T Consensus 72 ~~L~~r~gv~~~PaLvf~R~ 91 (107)
T PF07449_consen 72 RALAARFGVRRWPALVFFRD 91 (107)
T ss_dssp HHHHHHHT-TSSSEEEEEET
T ss_pred HHHHHHhCCccCCeEEEEEC
Confidence 67899999974 99999995
No 158
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=82.51 E-value=13 Score=38.07 Aligned_cols=103 Identities=12% Similarity=0.154 Sum_probs=65.5
Q ss_pred CCCeEEEEEecCCCh---hHHHHHHHHHhhCCC--ce-EEec----c--hhhHHHHhhhhccccc-eeeecccHHHHHhc
Q psy7942 45 DSKVVVAGLFKDASS---ELAKTFNEIASKVDD--LV-FDAS----S--ELAKTFNEIASKVDDL-VFVTSTNADILAEY 111 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~--~~-F~~~----~--~~~~~~~~~~~~~~~~-~~~~t~~~~v~~~~ 111 (216)
..++++|-|+++||. ...+.+.++.+++.+ +. .+++ + .....|.....+.+-. -.+...+..+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 478999999999984 556788888888832 33 3432 1 1233344444443321 11233456788899
Q ss_pred CCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 112 SVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 112 ~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
++.. |+.+++.+..+-...+.|.. ..+.|.++|...
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~-~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEG-HRKDLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEeccc-CHHHHHHHHHHH
Confidence 9986 99999964333334467887 788888888764
No 159
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=82.37 E-value=3.7 Score=27.71 Aligned_cols=38 Identities=21% Similarity=0.488 Sum_probs=26.3
Q ss_pred ccHHHHHhcCCCC-CeEEEEecCCCCcccccC-CCCCHHHHHHHHh
Q psy7942 103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEG-PASDEAALRKFLS 146 (216)
Q Consensus 103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G-~~~~~~~l~~fi~ 146 (216)
.+..-..+|++.. |++++ | +...|.| -. +.+.|..||+
T Consensus 37 ~~~~~~~~ygv~~vPalvI----n-g~~~~~G~~p-~~~el~~~l~ 76 (76)
T PF13192_consen 37 EDFEEIEKYGVMSVPALVI----N-GKVVFVGRVP-SKEELKELLE 76 (76)
T ss_dssp TTHHHHHHTT-SSSSEEEE----T-TEEEEESS---HHHHHHHHHH
T ss_pred cCHHHHHHcCCCCCCEEEE----C-CEEEEEecCC-CHHHHHHHhC
Confidence 3444448999976 99977 2 3688999 55 8899999874
No 160
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=82.35 E-value=24 Score=33.18 Aligned_cols=112 Identities=13% Similarity=0.200 Sum_probs=70.3
Q ss_pred ccCCCCCChHHHHHHHHh---hhCCCceeecCHHHHHHhHh-CCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEe
Q psy7942 7 GERRGGRTAEDIVNWLLK---KTGPPAKEFTSVDEIKAFIA-DSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDA 79 (216)
Q Consensus 7 ~~Y~G~Rta~~iv~~l~~---~~~~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~ 79 (216)
+.|.|--.-.++-.++.. ..++.. .| +.+..+.+.+ +.++-+-.|..+.| ........++|...+++..-
T Consensus 435 i~f~g~P~G~Ef~s~i~~i~~~~~~~~-~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~- 511 (555)
T TIGR03143 435 LKFHGVPSGHELNSFILALYNAAGPGQ-PL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAE- 511 (555)
T ss_pred eEEEecCccHhHHHHHHHHHHhcCCCC-CC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEE-
Confidence 456665555555555554 444543 44 4444444443 34554544555655 55566777777777666644
Q ss_pred cchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942 80 SSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145 (216)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi 145 (216)
-+| .+..++++++|++.. |++++- + ...+.|.. +.+.|..||
T Consensus 512 -------------~i~-----~~~~~~~~~~~~v~~vP~~~i~----~-~~~~~G~~-~~~~~~~~~ 554 (555)
T TIGR03143 512 -------------MID-----VSHFPDLKDEYGIMSVPAIVVD----D-QQVYFGKK-TIEEMLELI 554 (555)
T ss_pred -------------EEE-----CcccHHHHHhCCceecCEEEEC----C-EEEEeeCC-CHHHHHHhh
Confidence 133 556689999999986 999983 2 35678988 889998886
No 161
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=81.23 E-value=4.1 Score=27.16 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=33.4
Q ss_pred EEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCCC
Q psy7942 173 LLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQPK 212 (216)
Q Consensus 173 lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~~ 212 (216)
+.+|...+.+........+.++|+++.+++.+..+|....
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~ 42 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN 42 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC
Confidence 5678888888889999999999999988888888887543
No 162
>smart00594 UAS UAS domain.
Probab=80.54 E-value=20 Score=26.35 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=53.3
Q ss_pred eecCHHHH-HHhHhCCCeEEEEEecCCChhHHH----HHH--HHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942 32 EFTSVDEI-KAFIADSKVVVAGLFKDASSELAK----TFN--EIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST 103 (216)
Q Consensus 32 ~l~s~~~~-~~~~~~~~v~~V~f~~~~~~~~~~----~f~--~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~ 103 (216)
.-.+-+++ +...++.+.++|++..+|+..... .|. ++...+ .++.+- ++|- -...
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~--------------~~dv---~~~e 74 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFW--------------QVDV---DTSE 74 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEE--------------EecC---CChh
Confidence 33445444 455567889999999998743211 121 111112 233321 1110 0122
Q ss_pred cHHHHHhcCCCC-CeEEEEecCCCC-----cccccCCCCCHHHHHHHH
Q psy7942 104 NADILAEYSVDD-DTVAIFKKFDEG-----RVNYEGPASDEAALRKFL 145 (216)
Q Consensus 104 ~~~v~~~~~v~~-p~i~~~~~~de~-----~~~y~G~~~~~~~l~~fi 145 (216)
...++..|++.+ |+++++.+..+. .....|.. +.+.|..++
T Consensus 75 g~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~-~~~~l~~~l 121 (122)
T smart00594 75 GQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEI-SPEELMTFL 121 (122)
T ss_pred HHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCC-CHHHHHHhh
Confidence 345788999876 999998764321 22467888 888887765
No 163
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=80.47 E-value=7.1 Score=31.05 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=43.7
Q ss_pred CCCceeeeCc-chHHHhhccCCc--ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 149 SLPLVVEFNH-ETAQKIFGGEIK--SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 149 ~~P~v~~~~~-~~~~~~~~~~~~--~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
.+-.+.+++. +++........+ +.++.|+..+.+.+..+...|.++|++|. .+.|+.+|..
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d 123 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRAS 123 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEecc
Confidence 3566778887 777666543211 33444777777777888899999999996 5889888765
No 164
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=80.15 E-value=4.6 Score=30.87 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=35.3
Q ss_pred HHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942 161 AQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD 209 (216)
Q Consensus 161 ~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~ 209 (216)
+......+ ++.++.|...++..+......+.+++++|.+++.|+.+|.
T Consensus 13 ~~~a~~~g-k~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~v 60 (142)
T cd02950 13 PEVALSNG-KPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNV 60 (142)
T ss_pred HHHHHhCC-CEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEc
Confidence 34444444 3456668888888888999999999999988877776654
No 165
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=79.86 E-value=11 Score=30.46 Aligned_cols=63 Identities=6% Similarity=0.052 Sum_probs=44.6
Q ss_pred hcCCCceeeeCcchHHH-hhccCCcce-EEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 147 TQSLPLVVEFNHETAQK-IFGGEIKSH-LLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 147 ~~~~P~v~~~~~~~~~~-~~~~~~~~~-lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
...+..+.+++.+++.. +...+.... ++-|+..+.+.+..+...|.++|++|. .+.|+.+|..
T Consensus 78 ~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad 142 (192)
T cd02988 78 KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIIST 142 (192)
T ss_pred hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhH
Confidence 34577888888877764 333331123 444777777788889999999999997 5888887754
No 166
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.82 E-value=42 Score=31.16 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=75.4
Q ss_pred ccCCCCCChHHHHHHHHhh---hCCCceeecCHHHHHHhHh-CCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEe
Q psy7942 7 GERRGGRTAEDIVNWLLKK---TGPPAKEFTSVDEIKAFIA-DSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDA 79 (216)
Q Consensus 7 ~~Y~G~Rta~~iv~~l~~~---~~~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~ 79 (216)
+.|.|--.-.++-.|+... .++.. .| +.+..+.+.+ +.++-+-.|..+.| ......+.++|...+++++-
T Consensus 75 i~f~g~P~g~Ef~s~i~~i~~~~~~~~-~l-~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~- 151 (517)
T PRK15317 75 VRFAGIPMGHEFTSLVLALLQVGGHPP-KL-DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHT- 151 (517)
T ss_pred EEEEecCccHHHHHHHHHHHHhcCCCC-CC-CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEE-
Confidence 5666666666666665544 44543 44 4444444443 45666666666654 55667778888877777765
Q ss_pred cchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 80 SSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
-+| ....++++++|++.. |++++- + ...|.|.. ..+.|...+...
T Consensus 152 -------------~id-----~~~~~~~~~~~~v~~VP~~~i~----~-~~~~~g~~-~~~~~~~~~~~~ 197 (517)
T PRK15317 152 -------------MID-----GALFQDEVEARNIMAVPTVFLN----G-EEFGQGRM-TLEEILAKLDTG 197 (517)
T ss_pred -------------EEE-----chhCHhHHHhcCCcccCEEEEC----C-cEEEecCC-CHHHHHHHHhcc
Confidence 344 666789999999986 999762 2 35678888 778888877653
No 167
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=79.66 E-value=6.7 Score=29.21 Aligned_cols=57 Identities=5% Similarity=-0.065 Sum_probs=43.2
Q ss_pred ceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942 152 LVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD 209 (216)
Q Consensus 152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~ 209 (216)
.+.+++.+.+.....++ ...++.|..++++....+...|++++++.+..+-++-+|.
T Consensus 7 ~~~~it~~~~~~~i~~~-~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~ 63 (122)
T TIGR01295 7 GLEVTTVVRALEALDKK-ETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSEN 63 (122)
T ss_pred cceecCHHHHHHHHHcC-CcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCC
Confidence 45567777777776665 3456668888888899999999999999666677777774
No 168
>PHA02125 thioredoxin-like protein
Probab=78.48 E-value=16 Score=24.39 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.5
Q ss_pred ecccHHHHHhcCCCC-CeEE
Q psy7942 101 TSTNADILAEYSVDD-DTVA 119 (216)
Q Consensus 101 ~t~~~~v~~~~~v~~-p~i~ 119 (216)
...+++++++|++.. |+++
T Consensus 32 ~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 32 TDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred CCCCHHHHHHcCCceeCeEE
Confidence 445678999999986 9987
No 169
>KOG1731|consensus
Probab=78.18 E-value=2.3 Score=39.95 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=70.1
Q ss_pred ceeecCHHHHHHhHhC-CCeEEEEEecCCChh---HHHHHHHHHhhC----CCceEEecchhhHHHHhhhhccccceeee
Q psy7942 30 AKEFTSVDEIKAFIAD-SKVVVAGLFKDASSE---LAKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVFVT 101 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~-~~v~~V~f~~~~~~~---~~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
+.+| +.+.+++.+-+ +.-.+|-||.+||+. -.++|.++|+.+ +-+..+ .|| +
T Consensus 41 ii~L-d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~va--------------aVd-----C 100 (606)
T KOG1731|consen 41 IIEL-DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVA--------------AVD-----C 100 (606)
T ss_pred eEEe-ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEE--------------Eee-----c
Confidence 4555 46778776654 447788888888743 356777777765 223333 233 3
Q ss_pred c--ccHHHHHhcCCCC-CeEEEEecCCCCc---ccccCCCCCHHHHHHHHhh--------c---CCCceeeeCcc-hHHH
Q psy7942 102 S--TNADILAEYSVDD-DTVAIFKKFDEGR---VNYEGPASDEAALRKFLST--------Q---SLPLVVEFNHE-TAQK 163 (216)
Q Consensus 102 t--~~~~v~~~~~v~~-p~i~~~~~~de~~---~~y~G~~~~~~~l~~fi~~--------~---~~P~v~~~~~~-~~~~ 163 (216)
. .|..++.+++|.. |+|..|++...+. ..+.|+- ...+|...+.. + ..|.+..+.+. ++..
T Consensus 101 A~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~-~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~ 179 (606)
T KOG1731|consen 101 ADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPV-IPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEE 179 (606)
T ss_pred cchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCc-chhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHH
Confidence 3 4566899999997 9999999743221 1233433 34444444422 1 46777777654 5566
Q ss_pred hhcc
Q psy7942 164 IFGG 167 (216)
Q Consensus 164 ~~~~ 167 (216)
+++.
T Consensus 180 l~~~ 183 (606)
T KOG1731|consen 180 LDEG 183 (606)
T ss_pred Hhcc
Confidence 6664
No 170
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=76.63 E-value=7.7 Score=29.99 Aligned_cols=51 Identities=12% Similarity=-0.056 Sum_probs=35.8
Q ss_pred hHHHhhc-cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 160 TAQKIFG-GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 160 ~~~~~~~-~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
.+.+.+. .+-++.++-|...+++........|.++|+++.+...|+.+|.-
T Consensus 13 e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVD 64 (142)
T PLN00410 13 AVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDIT 64 (142)
T ss_pred HHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECC
Confidence 4444443 22123344488888888888899999999999988877777654
No 171
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=76.05 E-value=11 Score=24.92 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=34.5
Q ss_pred HHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 161 AQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 161 ~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
+....... .+.++.|...+........+.+++++++ .+++.|..+|...
T Consensus 3 ~~~~~~~~-~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~ 51 (93)
T cd02947 3 FEELIKSA-KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE 51 (93)
T ss_pred hHHHHhcC-CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC
Confidence 33444443 3446667777777778889999999998 6678888877653
No 172
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=75.44 E-value=29 Score=25.34 Aligned_cols=79 Identities=10% Similarity=0.111 Sum_probs=44.4
Q ss_pred CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--Cce-EEecc------hhhHHHHhhhhcccc-ceeeecccHHHHHhc
Q psy7942 45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLV-FDASS------ELAKTFNEIASKVDD-LVFVTSTNADILAEY 111 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~-F~~~~------~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~ 111 (216)
..++++|.|+..||. ...+.+.++.+++. .+. ++++. .........+.+-.- .-.+...+..+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 457889999999874 45677788887772 333 34321 122233333332211 111133445677778
Q ss_pred CCCC-CeEEEEec
Q psy7942 112 SVDD-DTVAIFKK 123 (216)
Q Consensus 112 ~v~~-p~i~~~~~ 123 (216)
++.. |+.+++.+
T Consensus 102 ~v~~~P~~~vid~ 114 (126)
T cd03012 102 GNQYWPALYLIDP 114 (126)
T ss_pred CCCcCCeEEEECC
Confidence 8765 88887764
No 173
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=74.64 E-value=7.2 Score=29.12 Aligned_cols=40 Identities=13% Similarity=-0.040 Sum_probs=31.1
Q ss_pred ceEEEEEe-------CCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 171 SHLLVFFS-------KAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 171 ~~lllf~~-------~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
+.++.|.. ...+........+++++.++.+++.|+.+|..
T Consensus 23 ~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd 69 (119)
T cd02952 23 PIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVG 69 (119)
T ss_pred eEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcC
Confidence 44555776 66667777889999999999988888888764
No 174
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=73.08 E-value=12 Score=27.89 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=31.7
Q ss_pred EEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 173 LLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 173 lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
|+=|...+.+.....-+.|.++|++|++.+.|..+|...
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe 56 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK 56 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc
Confidence 333878888788888899999999998778898888653
No 175
>KOG3171|consensus
Probab=72.84 E-value=20 Score=29.86 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=64.0
Q ss_pred CceeecCHHHHHHhHhCC---CeEEEEEecCC---ChhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942 29 PAKEFTSVDEIKAFIADS---KVVVAGLFKDA---SSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS 102 (216)
Q Consensus 29 ~v~~l~s~~~~~~~~~~~---~v~~V~f~~~~---~~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t 102 (216)
-|.++++-.++-+.+... -+.+|-.|++. |..+.....=+|..++.+.|- ++ .+
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFc--------------ki------ks 198 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFC--------------KI------KS 198 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEE--------------Ee------ee
Confidence 367888888877666542 34556677774 345556666778888888886 11 12
Q ss_pred ccHHHHHhcCCCC-CeEEEEecCCC--Cc----ccccCCCCCHHHHHHHHhhcCCC
Q psy7942 103 TNADILAEYSVDD-DTVAIFKKFDE--GR----VNYEGPASDEAALRKFLSTQSLP 151 (216)
Q Consensus 103 ~~~~v~~~~~v~~-p~i~~~~~~de--~~----~~y~G~~~~~~~l~~fi~~~~~P 151 (216)
++-....+|.... |++.+|+.++- +. ..+-.++ ...+|++|++...+-
T Consensus 199 s~~gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlgedf-fa~dle~FL~e~gll 253 (273)
T KOG3171|consen 199 SNTGASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGEDF-FAGDLESFLNEYGLL 253 (273)
T ss_pred ccccchhhhcccCCceEEEeeCCchhHHHHHHHHHHhhhh-hhhhHHHHHHHcCCC
Confidence 2223355676665 99999996431 11 1123356 778899999887643
No 176
>KOG0910|consensus
Probab=72.82 E-value=12 Score=29.17 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=44.1
Q ss_pred CCceeeeCcchHH-HhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 150 LPLVVEFNHETAQ-KIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 150 ~P~v~~~~~~~~~-~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
...+...+.+... ++.+++ .+.++-|...+.....-+...|.+++.+|.|++.|..+|.-
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~-~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD 102 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSD-VPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTD 102 (150)
T ss_pred cccccccCHHHHHHHHHccC-CCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccc
Confidence 3455666655554 455555 33344588888888899999999999999999999887753
No 177
>PLN02309 5'-adenylylsulfate reductase
Probab=72.57 E-value=9.7 Score=35.18 Aligned_cols=60 Identities=8% Similarity=0.124 Sum_probs=45.6
Q ss_pred CceeeeCcchHHHhhc--cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCc-eEEEEcCCC
Q psy7942 151 PLVVEFNHETAQKIFG--GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK-EEQDEDDDQ 210 (216)
Q Consensus 151 P~v~~~~~~~~~~~~~--~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~-~~f~~~d~~ 210 (216)
+.|.+++.+++..+.. ..-+..++.|+.+.+..+..+...+.++|++|.+. +.|..+|-.
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 4677899988887763 22134566688888888899999999999999875 888777644
No 178
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=70.99 E-value=15 Score=25.36 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=30.2
Q ss_pred HHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942 161 AQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD 209 (216)
Q Consensus 161 ~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~ 209 (216)
++.+.... ...++.|+.... ......++++|..+|+.+.|..+..
T Consensus 10 l~~~~~~~-~~~vvg~f~~~~---~~~~~~f~~~A~~~r~~~~F~~~~~ 54 (97)
T cd02981 10 LEKFLDKD-DVVVVGFFKDEE---SEEYKTFEKVAESLRDDYGFGHTSD 54 (97)
T ss_pred HHHHhccC-CeEEEEEECCCC---cHHHHHHHHHHHhcccCCeEEEECh
Confidence 44444444 345556664332 3567899999999999999988763
No 179
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=70.30 E-value=11 Score=25.93 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=28.9
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhcc--CceEEEEcCC
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFR--EKEEQDEDDD 209 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r--~~~~f~~~d~ 209 (216)
+.++.|.....+.+...+..|+++.++|+ +++.++.+.-
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~ 43 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSL 43 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEe
Confidence 44666888888778889999999999999 6676665543
No 180
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=69.92 E-value=11 Score=26.72 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=31.4
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
+.++.|+....+.+......+.++|+++++ +.++.+|..
T Consensus 20 ~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~ 58 (100)
T cd02999 20 YTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEES 58 (100)
T ss_pred EEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECC
Confidence 445668888888889999999999999975 677777754
No 181
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=69.88 E-value=49 Score=25.54 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=45.5
Q ss_pred CCCeEEEEEecCCChhH---HHHHHHHHhhC-C--------Cce-EEecc-hhhHHHHhhhhcccc-ceee-ec--ccHH
Q psy7942 45 DSKVVVAGLFKDASSEL---AKTFNEIASKV-D--------DLV-FDASS-ELAKTFNEIASKVDD-LVFV-TS--TNAD 106 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~-~--------~~~-F~~~~-~~~~~~~~~~~~~~~-~~~~-~t--~~~~ 106 (216)
.+++++|.|.++||.+. .+.+.++..++ + .+. +++|. +....+....++..- ..++ .. ....
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 57899999999998544 33444433322 1 222 34333 334445555555541 1111 11 1236
Q ss_pred HHHhcCCCC-CeEEEEec
Q psy7942 107 ILAEYSVDD-DTVAIFKK 123 (216)
Q Consensus 107 v~~~~~v~~-p~i~~~~~ 123 (216)
+++.|++.+ |+.+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~ 121 (146)
T cd03008 104 LEAQFSVEELPTVVVLKP 121 (146)
T ss_pred HHHHcCCCCCCEEEEECC
Confidence 888999986 99999986
No 182
>PTZ00062 glutaredoxin; Provisional
Probab=69.11 E-value=14 Score=30.27 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=35.2
Q ss_pred chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcC
Q psy7942 159 ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDD 208 (216)
Q Consensus 159 ~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d 208 (216)
+.+..+.+++....++.|...+.++..+..+.|.++|++|. .+.|+.+|
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~ 55 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVN 55 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEc
Confidence 34444545321244555767788889999999999999995 58888776
No 183
>KOG0907|consensus
Probab=68.93 E-value=16 Score=26.58 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=33.4
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
..++-|+..+.+....+...+.++|.+|.+ +.|+.+|.-+
T Consensus 23 liVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde 62 (106)
T KOG0907|consen 23 LVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE 62 (106)
T ss_pred eEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc
Confidence 334448888888889999999999999999 9999998764
No 184
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=68.88 E-value=70 Score=26.94 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=69.2
Q ss_pred ceeecCH--HHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEE-------e--------------cc-
Q psy7942 30 AKEFTSV--DEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFD-------A--------------SS- 81 (216)
Q Consensus 30 v~~l~s~--~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~-------~--------------~~- 81 (216)
+..++.. ..+-+|.+.+.+.|+-|+.=.|. ...+.|.++++++ +...|. | .+
T Consensus 84 vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh 163 (237)
T PF00837_consen 84 VVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEIPQH 163 (237)
T ss_pred eEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceeecCC
Confidence 4444433 24667888888988887755553 2345777777766 222231 1 01
Q ss_pred -------hhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCCCCcccccC---CC-CCHHHHHHHHhhc
Q psy7942 82 -------ELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEG---PA-SDEAALRKFLSTQ 148 (216)
Q Consensus 82 -------~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~G---~~-~~~~~l~~fi~~~ 148 (216)
+.|+.+.+-..+. -+++-+-+-.....|++-...+.+.+ ++.+.|.| ++ ...+++.+|+.+.
T Consensus 164 ~sledR~~aA~~l~~~~~~~--pi~vD~mdN~~~~~YgA~PeRlyIi~---~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 164 RSLEDRLRAAKLLKEEFPQC--PIVVDTMDNNFNKAYGALPERLYIIQ---DGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCHHHHHHHHHHHHhhCCCC--CEEEEccCCHHHHHhCCCcceEEEEE---CCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 1255555433222 25555556667788888767788877 35788976 32 2789999999764
No 185
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=68.53 E-value=35 Score=23.29 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=39.7
Q ss_pred CCeEEEEEecCCChhH---HHHHHHHHhhCC---CceE--EecchhhHHHHhhhhccc-cceeee---cccHHHHHhcCC
Q psy7942 46 SKVVVAGLFKDASSEL---AKTFNEIASKVD---DLVF--DASSELAKTFNEIASKVD-DLVFVT---STNADILAEYSV 113 (216)
Q Consensus 46 ~~v~~V~f~~~~~~~~---~~~f~~~A~~~~---~~~F--~~~~~~~~~~~~~~~~~~-~~~~~~---t~~~~v~~~~~v 113 (216)
+++++|.|+.+||... .+.+.++.+++. ++.| ...++..+.|.+...+.. +-..+. .....+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 3567777777776433 333344444443 3332 222334455655555551 111111 124467889998
Q ss_pred CC-CeEEEEec
Q psy7942 114 DD-DTVAIFKK 123 (216)
Q Consensus 114 ~~-p~i~~~~~ 123 (216)
.. |+++++.+
T Consensus 81 ~~iP~~~lld~ 91 (95)
T PF13905_consen 81 NGIPTLVLLDP 91 (95)
T ss_dssp TSSSEEEEEET
T ss_pred CcCCEEEEECC
Confidence 86 99998875
No 186
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=67.68 E-value=18 Score=25.75 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=32.1
Q ss_pred eeeC-cchHHHhhc-cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcC
Q psy7942 154 VEFN-HETAQKIFG-GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDD 208 (216)
Q Consensus 154 ~~~~-~~~~~~~~~-~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d 208 (216)
.+++ .+.+..+.+ .. ..+++.|+.... ....+.+.++|..+|+.+.|....
T Consensus 3 ~~i~~~~~~e~~~~~~~-~~~Vvg~f~~~~---~~~~~~F~~vA~~~R~d~~F~~~~ 55 (102)
T cd03066 3 EIINSERELQAFENIED-DIKLIGYFKSED---SEHYKAFEEAAEEFHPYIKFFATF 55 (102)
T ss_pred eEcCCHHHHHHHhcccC-CeEEEEEECCCC---CHHHHHHHHHHHhhhcCCEEEEEC
Confidence 3453 345666665 43 345555654321 345678999999999999886644
No 187
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=63.54 E-value=17 Score=27.10 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=37.4
Q ss_pred ceeeeCcchHHHhhccCCcceEEEEEe-CCcc--chh--hhhHHHHHHHHhc--cCceEEEEcCCCC
Q psy7942 152 LVVEFNHETAQKIFGGEIKSHLLVFFS-KAAG--HYE--SHFEPVQTVAKDF--REKEEQDEDDDQP 211 (216)
Q Consensus 152 ~v~~~~~~~~~~~~~~~~~~~lllf~~-~~~~--~~~--~~~~~l~~vA~~~--r~~~~f~~~d~~~ 211 (216)
.+..+|.+|+....... +.++++|+- .... +.. .....+.++|.++ .+++.|..+|...
T Consensus 10 ~v~~lt~~nF~~~v~~~-~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~ 75 (120)
T cd03065 10 RVIDLNEKNYKQVLKKY-DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK 75 (120)
T ss_pred ceeeCChhhHHHHHHhC-CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC
Confidence 46677888887655544 334566553 3331 244 4456677888888 7788888877654
No 188
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=63.03 E-value=19 Score=25.74 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=29.6
Q ss_pred chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcC
Q psy7942 159 ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDD 208 (216)
Q Consensus 159 ~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d 208 (216)
+.+..+.... ..+++.|+.... ....+.+.++|..+|+.+.|..+.
T Consensus 9 ~~l~~f~~~~-~~~Vvg~f~~~~---~~~~~~F~~vA~~~R~d~~F~~~~ 54 (104)
T cd03069 9 AEFEKFLSDD-DASVVGFFEDED---SKLLSEFLKAADTLRESFRFAHTS 54 (104)
T ss_pred HHHHHHhccC-CcEEEEEEcCCC---chHHHHHHHHHHhhhhcCEEEEEC
Confidence 3455555543 345555654321 345688889999999999887654
No 189
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=62.94 E-value=19 Score=25.26 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=29.6
Q ss_pred HHhhccCCcceEEEEEeCCccchhhhhHHH---HHHHHhccCceEEEEcCC
Q psy7942 162 QKIFGGEIKSHLLVFFSKAAGHYESHFEPV---QTVAKDFREKEEQDEDDD 209 (216)
Q Consensus 162 ~~~~~~~~~~~lllf~~~~~~~~~~~~~~l---~~vA~~~r~~~~f~~~d~ 209 (216)
.+....+ ++.++.|...++..+..+...+ .++++.+++++.++.+|.
T Consensus 5 ~~~~~~~-k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~ 54 (104)
T cd02953 5 AQALAQG-KPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADW 54 (104)
T ss_pred HHHHHcC-CeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEec
Confidence 3444444 3445557766666666665555 577888877788877774
No 190
>PHA02278 thioredoxin-like protein
Probab=62.92 E-value=20 Score=25.83 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=33.2
Q ss_pred hHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCc--eEEEEcCC
Q psy7942 160 TAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK--EEQDEDDD 209 (216)
Q Consensus 160 ~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~--~~f~~~d~ 209 (216)
.+......+ ++.++-|..+..+........+.++|+++.++ +.++-+|.
T Consensus 6 ~~~~~i~~~-~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~ 56 (103)
T PHA02278 6 DLNTAIRQK-KDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDA 56 (103)
T ss_pred HHHHHHhCC-CcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCc
Confidence 444554444 34566688888888888889999999886554 55555554
No 191
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=61.78 E-value=1.4e+02 Score=27.79 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=72.4
Q ss_pred ccCCCCCChHHHHHHHHh---hhCCCceeecCHHHHHHhHh-CCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEe
Q psy7942 7 GERRGGRTAEDIVNWLLK---KTGPPAKEFTSVDEIKAFIA-DSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDA 79 (216)
Q Consensus 7 ~~Y~G~Rta~~iv~~l~~---~~~~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~ 79 (216)
+.|.|--.-.++-.|+.. ..++. ..| +.+..+.+.+ +.++-+-.|..+.| ......+.++|...++++.-
T Consensus 76 i~f~g~P~g~Ef~s~i~~i~~~~~~~-~~l-~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~- 152 (515)
T TIGR03140 76 IRFAGIPGGHEFTSLVLAILQVGGHG-PKL-DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHT- 152 (515)
T ss_pred eEEEecCCcHHHHHHHHHHHHhcCCC-CCC-CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEE-
Confidence 556666555555555554 44554 345 4444444443 45666666666654 55667778888877777755
Q ss_pred cchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942 80 SSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
-+| ....++++++|++.. |++++- + ...+.|.. ..+.+.+-+..
T Consensus 153 -------------~id-----~~~~~~~~~~~~v~~VP~~~i~----~-~~~~~g~~-~~~~~~~~l~~ 197 (515)
T TIGR03140 153 -------------MID-----GALFQDEVEALGIQGVPAVFLN----G-EEFHNGRM-DLAELLEKLEE 197 (515)
T ss_pred -------------EEE-----chhCHHHHHhcCCcccCEEEEC----C-cEEEecCC-CHHHHHHHHhh
Confidence 244 666789999999986 999872 2 35678887 77777666654
No 192
>KOG0911|consensus
Probab=61.73 E-value=43 Score=27.96 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=45.8
Q ss_pred ceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942 30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106 (216)
Q Consensus 30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 106 (216)
|+.+...+++ ..+.....++.|...|. ......|..+|....++.|. .++ ....++
T Consensus 3 v~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~--------------k~~-----a~~~~e 61 (227)
T KOG0911|consen 3 VQFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFL--------------KLE-----AEEFPE 61 (227)
T ss_pred ceeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheee--------------eeh-----hhhhhH
Confidence 5567777777 55567777787777764 45566777777766667776 222 223445
Q ss_pred HHHhcCCCC-CeEEEEec
Q psy7942 107 ILAEYSVDD-DTVAIFKK 123 (216)
Q Consensus 107 v~~~~~v~~-p~i~~~~~ 123 (216)
++..+.+.. |..+.+..
T Consensus 62 is~~~~v~~vp~~~~~~~ 79 (227)
T KOG0911|consen 62 ISNLIAVEAVPYFVFFFL 79 (227)
T ss_pred HHHHHHHhcCceeeeeec
Confidence 666666554 77776653
No 193
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=60.30 E-value=20 Score=25.81 Aligned_cols=39 Identities=8% Similarity=-0.126 Sum_probs=31.0
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhccC-ceEEEEcCC
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFRE-KEEQDEDDD 209 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~-~~~f~~~d~ 209 (216)
+.++.|+.++.+.+......+.++++++++ ++.+..+|.
T Consensus 26 ~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~ 65 (111)
T cd02963 26 PYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNA 65 (111)
T ss_pred eEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEec
Confidence 445568888888888889999999999986 477777764
No 194
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=57.57 E-value=17 Score=26.90 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=28.4
Q ss_pred eeCcchHHHhhccCCcceEEEEEeCCcc-chhhhhHHHHHHHHhc
Q psy7942 155 EFNHETAQKIFGGEIKSHLLVFFSKAAG-HYESHFEPVQTVAKDF 198 (216)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~lllf~~~~~~-~~~~~~~~l~~vA~~~ 198 (216)
.++..++..+-+. +++++|++...+ ..+...+.++.+|++.
T Consensus 3 ~Lse~~a~~Ln~~---p~lvlf~D~Edeg~l~~A~~llQpiAd~~ 44 (116)
T cd03071 3 ELSESNAVQLNEG---PCLVLFVDSEDEGESEAAKQLIQPIAEKI 44 (116)
T ss_pred cccHHHHHhhcCC---ceEEEEecccchhhHHHHHHHHHHHHHHH
Confidence 4566666555433 568889976654 5677888888888875
No 195
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=57.51 E-value=1.2e+02 Score=25.82 Aligned_cols=82 Identities=10% Similarity=0.088 Sum_probs=47.9
Q ss_pred CCeEEEEEecCCC---hhHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccc----eeeecccHHHHHhcCCCC-
Q psy7942 46 SKVVVAGLFKDAS---SELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDL----VFVTSTNADILAEYSVDD- 115 (216)
Q Consensus 46 ~~v~~V~f~~~~~---~~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~----~~~~t~~~~v~~~~~v~~- 115 (216)
.+..+|.||.+.| ..........|.++. -+.+. +|.. .-....|...++++++..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS---------------~DG~~~p~fp~~~~d~gqa~~l~v~~~ 214 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPIS---------------VDGTLIPGLPNSRSDSGQAQHLGVKYF 214 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEe---------------cCCCCCCCCCCccCChHHHHhcCCccC
Confidence 5688888998876 344556666677762 22222 2210 000223456788999985
Q ss_pred CeEEEEecCCCCc-ccccCCCCCHHHHHH
Q psy7942 116 DTVAIFKKFDEGR-VNYEGPASDEAALRK 143 (216)
Q Consensus 116 p~i~~~~~~de~~-~~y~G~~~~~~~l~~ 143 (216)
|++.+..+..... .+=.|-. +.++|.+
T Consensus 215 Pal~Lv~~~t~~~~pv~~G~i-S~deL~~ 242 (256)
T TIGR02739 215 PALYLVNPKSQKMSPLAYGFI-SQDELKE 242 (256)
T ss_pred ceEEEEECCCCcEEEEeeccC-CHHHHHH
Confidence 9999887643322 2225777 7777654
No 196
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=57.15 E-value=58 Score=22.03 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=31.0
Q ss_pred ecccHHHHHhcCCCCCeEEEEecCC-CCcccccCCCCCHHHHHHHHh
Q psy7942 101 TSTNADILAEYSVDDDTVAIFKKFD-EGRVNYEGPASDEAALRKFLS 146 (216)
Q Consensus 101 ~t~~~~v~~~~~v~~p~i~~~~~~d-e~~~~y~G~~~~~~~l~~fi~ 146 (216)
...++++.++|+..-|.+.+-.... .......+.+ +.+.|.+|++
T Consensus 36 I~~d~~l~~~Y~~~IPVl~~~~~~~~~~~~~~~~~~-d~~~L~~~L~ 81 (81)
T PF05768_consen 36 IDEDPELFEKYGYRIPVLHIDGIRQFKEQEELKWRF-DEEQLRAWLE 81 (81)
T ss_dssp TTTTHHHHHHSCTSTSEEEETT-GGGCTSEEEESSB--HHHHHHHHH
T ss_pred CCCCHHHHHHhcCCCCEEEEcCcccccccceeCCCC-CHHHHHHHhC
Confidence 6678899999998889876644111 1134456788 9999999985
No 197
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=56.74 E-value=28 Score=25.89 Aligned_cols=52 Identities=17% Similarity=0.082 Sum_probs=33.5
Q ss_pred eeeeCcchHHHhhccCCcceEEEEEe--CCccchhhhhHHHHHHHHhcc---CceEEEEcCC
Q psy7942 153 VVEFNHETAQKIFGGEIKSHLLVFFS--KAAGHYESHFEPVQTVAKDFR---EKEEQDEDDD 209 (216)
Q Consensus 153 v~~~~~~~~~~~~~~~~~~~lllf~~--~~~~~~~~~~~~l~~vA~~~r---~~~~f~~~d~ 209 (216)
+.+|+.+|+....... +..|+-|+. +... + ...++++|.+|. +.+.+..+|-
T Consensus 3 ~v~L~~~nF~~~v~~~-~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~ 59 (116)
T cd03007 3 CVDLDTVTFYKVIPKF-KYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGI 59 (116)
T ss_pred eeECChhhHHHHHhcC-CcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEec
Confidence 5678999998887765 344555877 5543 2 356666776663 2477766665
No 198
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=55.83 E-value=53 Score=22.02 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=18.6
Q ss_pred HHHHHhHhCCCeEEEEEecCCCh
Q psy7942 37 DEIKAFIADSKVVVAGLFKDASS 59 (216)
Q Consensus 37 ~~~~~~~~~~~v~~V~f~~~~~~ 59 (216)
+.++...++++.++|.|+.+||.
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~ 30 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCP 30 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTH
T ss_pred HHHHHHHHcCCCEEEEEECCCCH
Confidence 44566677899999999999984
No 199
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=52.34 E-value=54 Score=23.62 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=29.4
Q ss_pred chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcC
Q psy7942 159 ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDD 208 (216)
Q Consensus 159 ~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d 208 (216)
+.+..+....-...++.|+.... ....+.+.++|..+|+++.|.++.
T Consensus 9 ~ele~f~~~~~~~~VVG~F~~~~---~~~~~~F~~vA~~~Rdd~~F~~t~ 55 (107)
T cd03068 9 KQVQEFLRDGDDVIIIGVFSGEE---DPAYQLYQDAANSLREDYKFHHTF 55 (107)
T ss_pred HHHHHHHhcCCCEEEEEEECCCC---CHHHHHHHHHHHhcccCCEEEEEC
Confidence 34555544321344555554321 245678889999999999997754
No 200
>KOG0913|consensus
Probab=50.47 E-value=14 Score=31.03 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=36.5
Q ss_pred ecccHHHHHhcCCC-CCeEEEEecCCCCcccccCCCCCHHHHHHHHhhc---CCCceeee
Q psy7942 101 TSTNADILAEYSVD-DDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ---SLPLVVEF 156 (216)
Q Consensus 101 ~t~~~~v~~~~~v~-~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~---~~P~v~~~ 156 (216)
.|.++-+.-+|-+. .|+|.=-+ |+..-.|.|.+ +..++.+|+... .++.+++.
T Consensus 80 vt~npgLsGRF~vtaLptIYHvk--DGeFrrysgaR-dk~dfisf~~~r~w~~i~p~p~w 136 (248)
T KOG0913|consen 80 VTTNPGLSGRFLVTALPTIYHVK--DGEFRRYSGAR-DKNDFISFEEHREWQSIDPVPEW 136 (248)
T ss_pred EEeccccceeeEEEecceEEEee--ccccccccCcc-cchhHHHHHHhhhhhccCCcchh
Confidence 67777666666655 37765444 56667799999 999999999865 34444443
No 201
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=47.74 E-value=1.5e+02 Score=23.88 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=49.3
Q ss_pred EEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccc---eee-ec--ccHHHHHhcCC---CCCe
Q psy7942 50 VAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDL---VFV-TS--TNADILAEYSV---DDDT 117 (216)
Q Consensus 50 ~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~---~~~-~t--~~~~v~~~~~v---~~p~ 117 (216)
+|.|+.+||. ...+.+.++++++.-..+++ .+|+. -|- .. ....+.+.|++ ..|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~V-------------s~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPt 139 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPY-------------TLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPT 139 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEE-------------EeCCCCCCCCceEecCchhHHHHHhCCCCCCCCe
Confidence 6669999984 45567778888773222331 11210 000 11 22346778884 3499
Q ss_pred EEEEecCCCC-cccccCCCCCHHHHHHHHhh
Q psy7942 118 VAIFKKFDEG-RVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 118 i~~~~~~de~-~~~y~G~~~~~~~l~~fi~~ 147 (216)
.+++.+.... ...+.|.. +.+.|.+.|..
T Consensus 140 tfLId~~G~i~~~~~~G~~-~~~~L~~~I~~ 169 (181)
T PRK13728 140 TFLVNVNTLEALPLLQGAT-DAAGFMARMDT 169 (181)
T ss_pred EEEEeCCCcEEEEEEECCC-CHHHHHHHHHH
Confidence 9998763322 23578998 88888776654
No 202
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=46.06 E-value=55 Score=21.80 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=28.8
Q ss_pred EEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942 176 FFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD 209 (216)
Q Consensus 176 f~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~ 209 (216)
|+..+.+........++++++++..++.++.+|.
T Consensus 5 ~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~ 38 (76)
T TIGR00412 5 IYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTD 38 (76)
T ss_pred EECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5557777788999999999999988899988884
No 203
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=44.58 E-value=48 Score=23.98 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=28.4
Q ss_pred eEEEE-EeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 172 HLLVF-FSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 172 ~lllf-~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
.++++ ..++++.+......+.++|..+ +++.|..+|..
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d 62 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFD 62 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCC
Confidence 34444 4566777888999999999988 67888887754
No 204
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=43.98 E-value=52 Score=23.03 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=30.0
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhccC---ceEEEEcCCC
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFRE---KEEQDEDDDQ 210 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~---~~~f~~~d~~ 210 (216)
+.++.|..++.+........+.++|+++++ .+.+..+|..
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~ 59 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT 59 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc
Confidence 445568888888788888999999999864 3667666654
No 205
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=41.38 E-value=46 Score=28.04 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=32.3
Q ss_pred HHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEE--EEcCC
Q psy7942 161 AQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQ--DEDDD 209 (216)
Q Consensus 161 ~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f--~~~d~ 209 (216)
+..+..++ ++.|+-|-+...+.+..-++.+++++++|++...| +++..
T Consensus 95 ildf~~g~-RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~E 144 (237)
T PF00837_consen 95 ILDFAKGN-RPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEE 144 (237)
T ss_pred HHHhccCC-CCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhh
Confidence 34454455 45555576666677778889999999999986544 44443
No 206
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=41.23 E-value=1.4e+02 Score=21.73 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=48.4
Q ss_pred CCeEEEEEec-CC---ChhHHHHHHHHHhhC--CCce-EEecchhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC--
Q psy7942 46 SKVVVAGLFK-DA---SSELAKTFNEIASKV--DDLV-FDASSELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD-- 115 (216)
Q Consensus 46 ~~v~~V~f~~-~~---~~~~~~~f~~~A~~~--~~~~-F~~~~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~-- 115 (216)
+++++|.|+. .+ |....+.+.++..++ .++. +++|-.......+.+...+- .-.+...+..+.+.|++..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 5677777774 44 345566777776665 2343 34433333333333333221 2222444556777888663
Q ss_pred --------CeEEEEecCCCCcccccCCCCCHHHHH
Q psy7942 116 --------DTVAIFKKFDEGRVNYEGPASDEAALR 142 (216)
Q Consensus 116 --------p~i~~~~~~de~~~~y~G~~~~~~~l~ 142 (216)
|+.+++.+...-...|.|.. ....+.
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~~~ 136 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVK-PKGHAE 136 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCC-ccchHH
Confidence 57667664222234455654 444443
No 207
>PF13728 TraF: F plasmid transfer operon protein
Probab=40.59 E-value=69 Score=26.33 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=35.0
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
..+++|+..+++-+......|+.+|++|.=.+..+-+|+.+
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~ 162 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRP 162 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCC
Confidence 35777888888878899999999999997789999999875
No 208
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=39.04 E-value=1.4e+02 Score=21.14 Aligned_cols=31 Identities=6% Similarity=0.168 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942 115 DDTVAIFKKFDEGRVNYEGPASDEAALRKFLS 146 (216)
Q Consensus 115 ~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~ 146 (216)
.|++.+.++.....+.|.|-. .-.++..||.
T Consensus 61 ~P~~~i~~~~~~~gIrF~GiP-~GhEf~Slil 91 (94)
T cd02974 61 KPSFSINRPGEDTGIRFAGIP-MGHEFTSLVL 91 (94)
T ss_pred CCEEEEecCCCcccEEEEecC-CchhHHHHHH
Confidence 499998876433458899876 5566767664
No 209
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=38.34 E-value=37 Score=26.85 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=14.8
Q ss_pred cHHHHHhcCCCC-CeEEEEecC-CCCcccccCCC
Q psy7942 104 NADILAEYSVDD-DTVAIFKKF-DEGRVNYEGPA 135 (216)
Q Consensus 104 ~~~v~~~~~v~~-p~i~~~~~~-de~~~~y~G~~ 135 (216)
|..++.+++|+. ||++++..- ++..+..+|..
T Consensus 136 D~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~ 169 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVIFNENNEEYGILIEGYY 169 (176)
T ss_dssp HHHHHHHTT-SSSSEEEEE---------------
T ss_pred HHHHHHHcCCCCCCEEEEEecccccccccccccc
Confidence 667889999986 999999832 22233445544
No 210
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=38.14 E-value=1.8e+02 Score=22.24 Aligned_cols=87 Identities=14% Similarity=0.315 Sum_probs=52.5
Q ss_pred CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceE-Eecc--------hhhHHHHhhhhcccc-ceeeecccHHHHH
Q psy7942 45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVF-DASS--------ELAKTFNEIASKVDD-LVFVTSTNADILA 109 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F-~~~~--------~~~~~~~~~~~~~~~-~~~~~t~~~~v~~ 109 (216)
..++++|.|+..+|. ...+.+.++..++. ++.| ++|- +....+...+.+... .-++...+..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 557788888888874 34556677776662 3432 3332 234566665555432 2333455667889
Q ss_pred hcCCCC-CeEEEEecCCCCcccccC
Q psy7942 110 EYSVDD-DTVAIFKKFDEGRVNYEG 133 (216)
Q Consensus 110 ~~~v~~-p~i~~~~~~de~~~~y~G 133 (216)
.|++.. |+++++.+ ++.+.|.|
T Consensus 104 ~~~v~~~P~~~lid~--~G~v~~~~ 126 (171)
T cd02969 104 AYGAACTPDFFLFDP--DGKLVYRG 126 (171)
T ss_pred HcCCCcCCcEEEECC--CCeEEEee
Confidence 999865 98888875 33455543
No 211
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=37.11 E-value=1.5e+02 Score=25.06 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=48.9
Q ss_pred CCeEEEEEecCCC---hhHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccc----eeeecccHHHHHhcCCCC-
Q psy7942 46 SKVVVAGLFKDAS---SELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDL----VFVTSTNADILAEYSVDD- 115 (216)
Q Consensus 46 ~~v~~V~f~~~~~---~~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~----~~~~t~~~~v~~~~~v~~- 115 (216)
++..++.||.+.| ....+.....|.++. -+.+. +|.. .-....+...++++++..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS---------------~DG~~~p~fp~~~~d~gqa~~l~v~~~ 207 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVS---------------VDGVINPLLPDSRTDQGQAQRLGVKYF 207 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEe---------------cCCCCCCCCCCCccChhHHHhcCCccc
Confidence 5578888898765 455667777787772 22232 2210 000234555678899875
Q ss_pred CeEEEEecCCCCc-ccccCCCCCHHHHHH
Q psy7942 116 DTVAIFKKFDEGR-VNYEGPASDEAALRK 143 (216)
Q Consensus 116 p~i~~~~~~de~~-~~y~G~~~~~~~l~~ 143 (216)
|++.+..+..... .+=.|-. +.++|.+
T Consensus 208 PAl~Lv~~~t~~~~pv~~G~i-S~deL~~ 235 (248)
T PRK13703 208 PALMLVDPKSGSVRPLSYGFI-TQDDLAK 235 (248)
T ss_pred ceEEEEECCCCcEEEEeeccC-CHHHHHH
Confidence 9999888654322 2236777 7777644
No 212
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=37.01 E-value=1.3e+02 Score=20.82 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=32.6
Q ss_pred cceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCCC
Q psy7942 170 KSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQPK 212 (216)
Q Consensus 170 ~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~~ 212 (216)
+..+.+|...+.+..+...+.+.+++..+. ++.+..+|....
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~ 54 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALF 54 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhC
Confidence 446778998888888899999999998874 677777775443
No 213
>KOG4093|consensus
Probab=36.51 E-value=56 Score=24.91 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=49.7
Q ss_pred HHHHHHhHhCCCeEEEEEecCC---ChhHHHHHHHHHhhC----CCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942 36 VDEIKAFIADSKVVVAGLFKDA---SSELAKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL 108 (216)
Q Consensus 36 ~~~~~~~~~~~~v~~V~f~~~~---~~~~~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~ 108 (216)
.+-++.|.++-+-.-|..+.+. +......+...+.++ +++.|| +.+.. +..
T Consensus 51 D~Iy~~fr~~Fp~l~v~~~t~~elKs~~aKe~WR~F~~~f~~kvdDyn~G-----------------TLlR~-----daS 108 (144)
T KOG4093|consen 51 DEIYEAFRSSFPELKVEEVTEDELKSAGAKEKWRPFCEKFEKKVDDYNFG-----------------TLLRI-----DAS 108 (144)
T ss_pred HHHHHHHHHhcccccccccCHHHHhccchHHHHHHHHHHHHhhhcccccc-----------------eeeee-----ccc
Confidence 3456778777555557666542 234445666667665 788888 22222 122
Q ss_pred HhcCCCCCeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942 109 AEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLST 147 (216)
Q Consensus 109 ~~~~v~~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~ 147 (216)
+.|+ +..+|.+.|- ....|.-.+ +.+.+.+|+..
T Consensus 109 ~ey~-~e~TifvpRi---qflAiEiAR-NreGlNd~~~~ 142 (144)
T KOG4093|consen 109 KEYS-QETTIFVPRI---QFLAIEIAR-NREGLNDWIKE 142 (144)
T ss_pred cccC-CCceEEEeeh---hhHHHHHHh-hhccchhhhhh
Confidence 3454 2478888872 234455555 77888888764
No 214
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=36.10 E-value=86 Score=21.98 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=25.2
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEE
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQD 205 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~ 205 (216)
+.++.|...+++.....+..++++++++.+++.++
T Consensus 23 ~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi 57 (114)
T cd02967 23 PTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVV 57 (114)
T ss_pred eEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEE
Confidence 44556777777777778888899888887765443
No 215
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=35.89 E-value=38 Score=21.90 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=21.8
Q ss_pred CCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHh
Q psy7942 9 RRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIA 44 (216)
Q Consensus 9 Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~ 44 (216)
.+|+||.++|++.+.++.+-+...+ .+++..|+.
T Consensus 26 ~~g~~t~~ei~~~l~~~y~~~~~~~--~~dv~~fl~ 59 (68)
T PF05402_consen 26 LDGPRTVEEIVDALAEEYDVDPEEA--EEDVEEFLE 59 (68)
T ss_dssp --SSS-HHHHHHHHHHHTT--HHHH--HHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHcCCCHHHH--HHHHHHHHH
Confidence 4799999999999999987655444 355566553
No 216
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=35.85 E-value=1.7e+02 Score=22.58 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=31.8
Q ss_pred eEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 172 HLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 172 ~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
.++.|....++.+.+.+..|.+++++|+-.+..+-+|..
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 366788888888888999999999999766777777764
No 217
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=35.61 E-value=1.8e+02 Score=21.33 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=27.1
Q ss_pred HHHHhcCCCC-CeEEEEecCCCC---cccccCCCCCHHHHHHHHh
Q psy7942 106 DILAEYSVDD-DTVAIFKKFDEG---RVNYEGPASDEAALRKFLS 146 (216)
Q Consensus 106 ~v~~~~~v~~-p~i~~~~~~de~---~~~y~G~~~~~~~l~~fi~ 146 (216)
.++..+++.. |+++++-..+++ .....|.. +.++|..-+.
T Consensus 67 ~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~-~~~~ll~~L~ 110 (116)
T cd02991 67 RVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLI-QPEDLINRLT 110 (116)
T ss_pred HHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCC-CHHHHHHHHH
Confidence 4677888875 999888543332 23468888 8888776554
No 218
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=34.52 E-value=95 Score=26.46 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=33.5
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
..++.|...+++.+......|++++++|.-.+.++-+|+.+
T Consensus 168 ~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~ 208 (271)
T TIGR02740 168 SGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGP 208 (271)
T ss_pred eEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCc
Confidence 44566777788888899999999999998778888888754
No 219
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=34.30 E-value=89 Score=22.84 Aligned_cols=38 Identities=8% Similarity=-0.022 Sum_probs=26.6
Q ss_pred ceEEEEEeCCccc-hhhhhHHHHHHHHhccCc----eEEEEcC
Q psy7942 171 SHLLVFFSKAAGH-YESHFEPVQTVAKDFREK----EEQDEDD 208 (216)
Q Consensus 171 ~~lllf~~~~~~~-~~~~~~~l~~vA~~~r~~----~~f~~~d 208 (216)
..++.|....++. +...+..|++++++++++ +.++.+-
T Consensus 24 ~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs 66 (142)
T cd02968 24 PVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFIS 66 (142)
T ss_pred EEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEE
Confidence 4566677777765 777888899998888653 6555543
No 220
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=33.46 E-value=96 Score=22.71 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=27.1
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhccCc-----eEEEEcCC
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREK-----EEQDEDDD 209 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~-----~~f~~~d~ 209 (216)
..++.|....++.+...+..|.+++++++++ +.++-+|.
T Consensus 19 ~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~ 62 (132)
T cd02964 19 TVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR 62 (132)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Confidence 4455577777777888888899998888763 44455454
No 221
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=32.43 E-value=80 Score=22.18 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=18.7
Q ss_pred cCCCCCChHHHHHHHHhhhCC
Q psy7942 8 ERRGGRTAEDIVNWLLKKTGP 28 (216)
Q Consensus 8 ~Y~G~Rta~~iv~~l~~~~~~ 28 (216)
.|+.--+-++|++|+.+..+.
T Consensus 25 ty~nt~sG~~Iv~~L~~n~~~ 45 (84)
T cd04436 25 TYQNTSSGSEIVSWLQENMPE 45 (84)
T ss_pred cccCcccHHHHHHHHHHcCCC
Confidence 688888999999999999876
No 222
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=31.45 E-value=2.3e+02 Score=21.44 Aligned_cols=24 Identities=4% Similarity=0.206 Sum_probs=19.8
Q ss_pred ecccHHHHHhcCCCC-CeEEEEecC
Q psy7942 101 TSTNADILAEYSVDD-DTVAIFKKF 124 (216)
Q Consensus 101 ~t~~~~v~~~~~v~~-p~i~~~~~~ 124 (216)
...|+.+.++|+|+. |++++-+..
T Consensus 57 v~IdP~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred EEEChHHHhhcCceEcCEEEEECCC
Confidence 334799999999986 999999853
No 223
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=31.34 E-value=1.2e+02 Score=20.35 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=27.6
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhcc-CceEEEEcCCCC
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFR-EKEEQDEDDDQP 211 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r-~~~~f~~~d~~~ 211 (216)
..++.|.....+........|.++.+++. ..+.++.++..+
T Consensus 21 ~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~ 62 (116)
T cd02966 21 VVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD 62 (116)
T ss_pred EEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC
Confidence 34555666666777788899999999986 345555544433
No 224
>KOG3170|consensus
Probab=30.82 E-value=3.1e+02 Score=22.75 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=56.6
Q ss_pred ceeecCHHHHHHhHh-CCCe-EEEEEecCC---ChhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942 30 AKEFTSVDEIKAFIA-DSKV-VVAGLFKDA---SSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTN 104 (216)
Q Consensus 30 v~~l~s~~~~~~~~~-~~~v-~~V~f~~~~---~~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~ 104 (216)
|..|+..+=.+.+-+ +..+ |||-.|.+. |.-+..-+..+|.+|+.+.|. ....
T Consensus 93 V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFV----------------------ki~a 150 (240)
T KOG3170|consen 93 VFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFV----------------------KIPA 150 (240)
T ss_pred eeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEE----------------------eccc
Confidence 556654433344433 4455 444445442 455567888999999999997 3332
Q ss_pred HHHHHhcCC-CCCeEEEEecCCC-----CcccccCCCCCHHHHHHHHhhc
Q psy7942 105 ADILAEYSV-DDDTVAIFKKFDE-----GRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 105 ~~v~~~~~v-~~p~i~~~~~~de-----~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
......|-- ..|||.+|..++- ....+-|.-.+.+++..++-+.
T Consensus 151 t~cIpNYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 151 TTCIPNYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred ccccCCCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 333344432 2599999997542 1234555433778887766544
No 225
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=30.69 E-value=2.2e+02 Score=20.92 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=47.8
Q ss_pred CCCeEEEEEecC-CChh---HHHHHHHHHhhC--CCceE-EecchhhHHHHhhhhccc-cceeeecccHHHHHhcCCC--
Q psy7942 45 DSKVVVAGLFKD-ASSE---LAKTFNEIASKV--DDLVF-DASSELAKTFNEIASKVD-DLVFVTSTNADILAEYSVD-- 114 (216)
Q Consensus 45 ~~~v~~V~f~~~-~~~~---~~~~f~~~A~~~--~~~~F-~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~v~~~~~v~-- 114 (216)
..++++|.|+.. ||.. ....+.++++++ ..+.+ +++-...+.-.+++.+-. +..++...+..+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 567788888888 8843 344556666554 33443 333222222444444432 2333344556789999976
Q ss_pred -------C-CeEEEEecCCCCcccc
Q psy7942 115 -------D-DTVAIFKKFDEGRVNY 131 (216)
Q Consensus 115 -------~-p~i~~~~~~de~~~~y 131 (216)
. |+.+++-+ ++.+.|
T Consensus 107 ~~~~~~~~~P~~~lId~--~G~V~~ 129 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDK--DGKVVY 129 (146)
T ss_dssp CCTTTTSSSSEEEEEET--TSBEEE
T ss_pred cccccCCeecEEEEEEC--CCEEEE
Confidence 5 98888775 334544
No 226
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=30.41 E-value=1.1e+02 Score=22.92 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=32.2
Q ss_pred cceEEEEEeCCccchhhhhHHHHHHHHhc--cCceEEEEcCC
Q psy7942 170 KSHLLVFFSKAAGHYESHFEPVQTVAKDF--REKEEQDEDDD 209 (216)
Q Consensus 170 ~~~lllf~~~~~~~~~~~~~~l~~vA~~~--r~~~~f~~~d~ 209 (216)
+..|..|.+..++.+..+...+.++-+++ .+++.|++..+
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 34566788988888888889998999999 88999888776
No 227
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=30.00 E-value=2.5e+02 Score=21.34 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=39.6
Q ss_pred HHHHHhhcCCCceeeeCcchHHHhhccCCcceEEEEEeCCc---cchhhhhHHHHHHHHhccC-ceEEEEcCCC
Q psy7942 141 LRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAA---GHYESHFEPVQTVAKDFRE-KEEQDEDDDQ 210 (216)
Q Consensus 141 l~~fi~~~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~---~~~~~~~~~l~~vA~~~r~-~~~f~~~d~~ 210 (216)
|.+=+..+..|.+.+ .++....... .. .++|+..+. .+.....-.|.++|++|.+ ++.|+-+|--
T Consensus 10 l~~rl~~~g~~~~~~---~~~~~~~~~~-~~-~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD 78 (132)
T PRK11509 10 LWQRMLARGWTPVSE---SRLDDWLTQA-PD-GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE 78 (132)
T ss_pred HHHHHHHcCCCcccc---ccHHHHHhCC-Cc-EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC
Confidence 333344456776665 5555555543 33 345554332 3445677889999999984 5888777654
No 228
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=29.20 E-value=74 Score=23.89 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=31.6
Q ss_pred CcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc-CceEEEEcCCC
Q psy7942 157 NHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR-EKEEQDEDDDQ 210 (216)
Q Consensus 157 ~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r-~~~~f~~~d~~ 210 (216)
+.+....+-....+..+++|....+++.......|.++|+... -++.++..|.+
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~ 83 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN 83 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 3433333333333456788889999999999999999999884 34677766644
No 229
>PF12976 DUF3860: Domain of Unknown Function with PDB structure (DUF3860); InterPro: IPR024619 This protein family includes hypothetical protein (JCVI_PEP_1096688149193) whose crystal structure has been solved PDB:2OD5. The hypothetical protein is from an environmental metagenome (unidentified marine microbe).
Probab=28.19 E-value=1.4e+02 Score=20.68 Aligned_cols=40 Identities=18% Similarity=0.429 Sum_probs=30.1
Q ss_pred CCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhC-CCeEEEEEe
Q psy7942 11 GGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIAD-SKVVVAGLF 54 (216)
Q Consensus 11 G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~-~~v~~V~f~ 54 (216)
-+|..-+|.+|+.+++.|.. ..+++.++++. .+++-||-.
T Consensus 17 R~~NT~EI~~~~~~~M~~~s----~Pe~~~NiL~~D~~I~ri~T~ 57 (92)
T PF12976_consen 17 RPRNTIEISAWLASQMDPNS----CPEDVTNILEADESIVRIGTV 57 (92)
T ss_pred CcccHHHHHHHHHhccCCCC----CHHHHHHHHhccccceeeeee
Confidence 36788899999999998863 56888888864 555667643
No 230
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=28.04 E-value=1.3e+02 Score=21.76 Aligned_cols=40 Identities=10% Similarity=-0.058 Sum_probs=26.6
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhccCc-----eEEEEcCCC
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREK-----EEQDEDDDQ 210 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~-----~~f~~~d~~ 210 (216)
+.++.|....++.+......+.+++++++++ +.++-+|..
T Consensus 20 ~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~ 64 (131)
T cd03009 20 TVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD 64 (131)
T ss_pred EEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC
Confidence 3455577777776777788888888888653 455555543
No 231
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=27.86 E-value=1.6e+02 Score=21.10 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=23.7
Q ss_pred eEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEc
Q psy7942 172 HLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDED 207 (216)
Q Consensus 172 ~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~ 207 (216)
..+++-|.. ++-.+.+.++|++|.+++..++.
T Consensus 66 kfiLIGDsg----q~DpeiY~~ia~~~P~~i~ai~I 97 (100)
T PF09949_consen 66 KFILIGDSG----QHDPEIYAEIARRFPGRILAIYI 97 (100)
T ss_pred cEEEEeeCC----CcCHHHHHHHHHHCCCCEEEEEE
Confidence 355565654 33378999999999999988775
No 232
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=26.71 E-value=1.5e+02 Score=25.27 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=34.6
Q ss_pred eEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 172 HLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 172 ~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
.+++|+..+++.+.++...++..|++|.=.+..+-+|+++
T Consensus 153 gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~ 192 (256)
T TIGR02739 153 GLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTL 192 (256)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCC
Confidence 5777888777778889999999999999889999999985
No 233
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=25.39 E-value=1.7e+02 Score=21.33 Aligned_cols=23 Identities=9% Similarity=0.381 Sum_probs=19.4
Q ss_pred ecccHHHHHhcCCCC-CeEEEEec
Q psy7942 101 TSTNADILAEYSVDD-DTVAIFKK 123 (216)
Q Consensus 101 ~t~~~~v~~~~~v~~-p~i~~~~~ 123 (216)
...|+.+.++|+++. |++++-+.
T Consensus 57 v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 57 VQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred eeEChhHHhhCCceEcCEEEEEcC
Confidence 345799999999986 99999885
No 234
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=25.29 E-value=88 Score=22.87 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=30.3
Q ss_pred chHHHhhccCCcceEEEEEeC-CccchhhhhHHHHHHHHhccCceEEEEcCCCCCcc
Q psy7942 159 ETAQKIFGGEIKSHLLVFFSK-AAGHYESHFEPVQTVAKDFREKEEQDEDDDQPKRD 214 (216)
Q Consensus 159 ~~~~~~~~~~~~~~lllf~~~-~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~~~~ 214 (216)
+.+..+.+.....++++|=-. .++-+......+.+.+....+.+.+.++|.+.-|+
T Consensus 8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~ 64 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRP 64 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHH
T ss_pred HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCch
Confidence 455556655333456666532 34444567777777777777778888888777664
No 235
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=24.94 E-value=1.2e+02 Score=25.18 Aligned_cols=40 Identities=10% Similarity=0.239 Sum_probs=29.3
Q ss_pred ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942 103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148 (216)
Q Consensus 103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~ 148 (216)
.+..+++++++.+ |+++ +++ +. ...|-. ..+.|.++|...
T Consensus 190 ~~~~la~~lgi~gTPtiv-~~~--G~--~~~G~~-~~~~L~~~l~~~ 230 (232)
T PRK10877 190 DHYALGVQFGVQGTPAIV-LSN--GT--LVPGYQ-GPKEMKAFLDEH 230 (232)
T ss_pred HhHHHHHHcCCccccEEE-EcC--Ce--EeeCCC-CHHHHHHHHHHc
Confidence 3456788999987 9998 542 22 347877 889999999865
No 236
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=23.71 E-value=1.8e+02 Score=24.59 Aligned_cols=40 Identities=8% Similarity=0.001 Sum_probs=34.5
Q ss_pred eEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942 172 HLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP 211 (216)
Q Consensus 172 ~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~ 211 (216)
.+++|+..+++-+.++...++..|++|.=.+..+-+|+++
T Consensus 146 GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~ 185 (248)
T PRK13703 146 GLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVI 185 (248)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCC
Confidence 5777888777878899999999999999889999999865
No 237
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=23.29 E-value=3.4e+02 Score=20.72 Aligned_cols=72 Identities=25% Similarity=0.279 Sum_probs=42.7
Q ss_pred eeecCHHHHHHhHh--CCCeEEEEEecCCChhH---HHHHHHHHhhCCCc-eEEecchhhHHHHhhhhccccceeeeccc
Q psy7942 31 KEFTSVDEIKAFIA--DSKVVVAGLFKDASSEL---AKTFNEIASKVDDL-VFDASSELAKTFNEIASKVDDLVFVTSTN 104 (216)
Q Consensus 31 ~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~~~---~~~f~~~A~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~~~~t~~ 104 (216)
..|.|.-+++..+. .+++++|=|+.+++... -+...++|.+..++ .+++ +| .+.-
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~--------------vD-----i~~V 63 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYL--------------VD-----IDEV 63 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEE--------------EE-----TTTT
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEE--------------EE-----cccc
Confidence 35777888877654 58899999998887533 34666677766443 3431 22 3333
Q ss_pred HHHHHhcCCCCCe-EEEE
Q psy7942 105 ADILAEYSVDDDT-VAIF 121 (216)
Q Consensus 105 ~~v~~~~~v~~p~-i~~~ 121 (216)
++..+.|.+..|. +.+|
T Consensus 64 pdfn~~yel~dP~tvmFF 81 (133)
T PF02966_consen 64 PDFNQMYELYDPCTVMFF 81 (133)
T ss_dssp HCCHHHTTS-SSEEEEEE
T ss_pred hhhhcccccCCCeEEEEE
Confidence 4556778887774 5555
No 238
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=22.59 E-value=4.6e+02 Score=21.89 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=21.1
Q ss_pred CCCeEEEEEecCCChh---HHHHHHHHHhhC
Q psy7942 45 DSKVVVAGLFKDASSE---LAKTFNEIASKV 72 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~~---~~~~f~~~A~~~ 72 (216)
.+++++|.|+..||.. ..+.+.++.+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~ 128 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKY 128 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHH
Confidence 3578999999999854 455677777777
No 239
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.71 E-value=2.9e+02 Score=19.22 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=41.7
Q ss_pred CC--CChHHHHHHHHhhhCCCcee------ecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhCCCceEE
Q psy7942 11 GG--RTAEDIVNWLLKKTGPPAKE------FTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFD 78 (216)
Q Consensus 11 G~--Rta~~iv~~l~~~~~~~v~~------l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~~~~~F~ 78 (216)
|+ +....+-+.+.+.-+..+.. -.....+++-+++.+++++. ..--+........+.|++. +.+|.
T Consensus 6 GG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~-t~~vsH~~~~~vk~~akk~-~ip~~ 79 (97)
T PF10087_consen 6 GGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVF-TDYVSHNAMWKVKKAAKKY-GIPII 79 (97)
T ss_pred cCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEE-eCCcChHHHHHHHHHHHHc-CCcEE
Confidence 66 67778888888765444333 22334588888888888774 2223456677788888887 33443
No 240
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=21.65 E-value=5.9e+02 Score=23.10 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=19.1
Q ss_pred cCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC
Q psy7942 34 TSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV 72 (216)
Q Consensus 34 ~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~ 72 (216)
.+.+.+.++++...+-+|... .+......+.+++.++
T Consensus 55 ~d~~~l~~~a~~~~iD~Vv~g--~E~~l~~glad~~~~~ 91 (426)
T PRK13789 55 LDKSSVQSFLKSNPFDLIVVG--PEDPLVAGFADWAAEL 91 (426)
T ss_pred CCHHHHHHHHHHcCCCEEEEC--CchHHHHHHHHHHHHc
Confidence 466667777776555333321 2334445555555544
No 241
>PRK15000 peroxidase; Provisional
Probab=21.61 E-value=4.3e+02 Score=21.19 Aligned_cols=104 Identities=10% Similarity=0.110 Sum_probs=58.8
Q ss_pred CCeEEEEEecC-C---ChhHHHHHHHHHhhC--CCc-eEEecch---hhHHHHhh-hhccc----cceeeecccHHHHHh
Q psy7942 46 SKVVVAGLFKD-A---SSELAKTFNEIASKV--DDL-VFDASSE---LAKTFNEI-ASKVD----DLVFVTSTNADILAE 110 (216)
Q Consensus 46 ~~v~~V~f~~~-~---~~~~~~~f~~~A~~~--~~~-~F~~~~~---~~~~~~~~-~~~~~----~~~~~~t~~~~v~~~ 110 (216)
.+.+++.||+. + |..+...|.+.+.++ .++ .+++|-. ..++|.+. .+..+ .+-.+...+.++++.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 46788888874 5 466677788777776 233 3555543 34677653 22111 122223455678899
Q ss_pred cCCC-------CCeEEEEecCCCCcccccCCC---CCHHHHHHHHhhcC
Q psy7942 111 YSVD-------DDTVAIFKKFDEGRVNYEGPA---SDEAALRKFLSTQS 149 (216)
Q Consensus 111 ~~v~-------~p~i~~~~~~de~~~~y~G~~---~~~~~l~~fi~~~~ 149 (216)
|++. .|+..++-+...-...+.|+. ++.+++.+.++..+
T Consensus 114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 9975 377777764222122222321 27788888887643
No 242
>PLN02412 probable glutathione peroxidase
Probab=21.32 E-value=3.9e+02 Score=20.57 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=19.9
Q ss_pred CCCeEEEEEecCCCh---hHHHHHHHHHhhC
Q psy7942 45 DSKVVVAGLFKDASS---ELAKTFNEIASKV 72 (216)
Q Consensus 45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~ 72 (216)
..++++|.|+.+||. ...+.+.++..++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~ 58 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKY 58 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 357888888888874 3456777777776
No 243
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=21.18 E-value=1.7e+02 Score=19.15 Aligned_cols=37 Identities=5% Similarity=-0.179 Sum_probs=25.0
Q ss_pred EEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942 174 LVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ 210 (216)
Q Consensus 174 llf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~ 210 (216)
.+|.+...+..-.....++++.+...+++.+.|..+.
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 3466666666666677777777777777777776553
No 244
>PHA02554 13 neck protein; Provisional
Probab=21.04 E-value=1.4e+02 Score=26.00 Aligned_cols=31 Identities=16% Similarity=0.446 Sum_probs=23.9
Q ss_pred CCCChHHHHHHHHhhhCCCceeec-CHHHHHH
Q psy7942 11 GGRTAEDIVNWLLKKTGPPAKEFT-SVDEIKA 41 (216)
Q Consensus 11 G~Rta~~iv~~l~~~~~~~v~~l~-s~~~~~~ 41 (216)
-+++..+|..+++|++|-||..|+ +.+++.+
T Consensus 4 ~~~sp~eLkD~iLRrLGAPii~Ievt~dQi~D 35 (311)
T PHA02554 4 NPNNPRELKDYILRRLGAPIINVEVTEDQIYD 35 (311)
T ss_pred CCCCHHHHHHHHHHhcCCCeeEeecCHHHHHH
Confidence 367889999999999999987664 4455544
No 245
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=20.80 E-value=2.1e+02 Score=21.64 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=32.1
Q ss_pred cceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942 170 KSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD 209 (216)
Q Consensus 170 ~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~ 209 (216)
++.++.|.+..++.+..+...+.++.+++.+++.+.+...
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 3557778888888888899999999999988887766553
No 246
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=20.79 E-value=2.5e+02 Score=20.16 Aligned_cols=37 Identities=8% Similarity=0.068 Sum_probs=26.6
Q ss_pred ceEEEEEeCCccchhhhhHHHHHHHHhccCc-eEEEEc
Q psy7942 171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREK-EEQDED 207 (216)
Q Consensus 171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~-~~f~~~ 207 (216)
+.++.|....++.....+..|.++.++|+++ +.++-+
T Consensus 25 ~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i 62 (126)
T cd03012 25 VVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGV 62 (126)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEe
Confidence 4455677777776778889999999999864 544433
No 247
>KOG3414|consensus
Probab=20.74 E-value=3.9e+02 Score=20.43 Aligned_cols=72 Identities=24% Similarity=0.311 Sum_probs=42.9
Q ss_pred eecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCce-EEecchhhHHHHhhhhccccceeeecccH
Q psy7942 32 EFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLV-FDASSELAKTFNEIASKVDDLVFVTSTNA 105 (216)
Q Consensus 32 ~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 105 (216)
.|.|..+++..+. ..++++|-|+.+++. ..-+.+..+|.+..++. .+ -+| .+.-+
T Consensus 7 ~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iy--------------lvd-----ideV~ 67 (142)
T KOG3414|consen 7 TLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIY--------------LVD-----IDEVP 67 (142)
T ss_pred ccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEE--------------EEe-----cchhh
Confidence 4667777776665 478899999888763 23345666666653332 22 011 22334
Q ss_pred HHHHhcCCCC-CeEEEEe
Q psy7942 106 DILAEYSVDD-DTVAIFK 122 (216)
Q Consensus 106 ~v~~~~~v~~-p~i~~~~ 122 (216)
+..+-|++.. |++.+|-
T Consensus 68 ~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 68 DFVKMYELYDPPTVMFFF 85 (142)
T ss_pred hhhhhhcccCCceEEEEE
Confidence 5567788875 7777555
No 248
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=20.40 E-value=2.1e+02 Score=20.07 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=27.1
Q ss_pred cceEEEEEeC-CccchhhhhHHHHHHHHhccCc-eEEEEcC
Q psy7942 170 KSHLLVFFSK-AAGHYESHFEPVQTVAKDFREK-EEQDEDD 208 (216)
Q Consensus 170 ~~~lllf~~~-~~~~~~~~~~~l~~vA~~~r~~-~~f~~~d 208 (216)
++.++.|+.. ..+.....+..|.++.++|+.+ +.++.+.
T Consensus 26 k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is 66 (124)
T PF00578_consen 26 KPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIS 66 (124)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred CcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecc
Confidence 3456667766 6666777888888888888864 6555443
Done!