RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7942
(216 letters)
>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic.
This model represents eukaryotic protein disulfide
isomerases retained in the endoplasmic reticulum (ER)
and closely related forms. Some members have been
assigned alternative or additional functions such as
prolyl 4-hydroxylase and
dolichyl-diphosphooligosaccharide-protein
glycotransferase. Members of this family have at least
two protein-disulfide domains, each similar to
thioredoxin but with the redox-active disulfide in the
motif PWCGHCK, and an ER retention signal at the extreme
C-terminus (KDEL, HDEL, and similar motifs).
Length = 462
Score = 124 bits (313), Expect = 2e-33
Identities = 65/195 (33%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 11 GGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIAS 70
G R A+ IV ++ K++GP KE +V +++AF+AD VVV G FKD SEL TF +A
Sbjct: 94 GPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAE 153
Query: 71 KVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGR-- 128
K+ D+ F F S++ A+ D+V +FK DE
Sbjct: 154 KLRDVYF--------------------FFAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKF 193
Query: 129 --VNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYES 186
V+ E D + L KF+ +SLPLV EF ETA K F L ++ +E
Sbjct: 194 SKVDGEMDT-DVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEE 252
Query: 187 HFEPVQTVAKDFREK 201
AK FR K
Sbjct: 253 LRNRFLEAAKKFRGK 267
>gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain.
Length = 183
Score = 77.4 bits (191), Expect = 9e-18
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 78 DASSELAKTFNEIASKV-DDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPAS 136
D L + F + A ++ D+ F + + ++ +Y + + T+ +F+KFDE +V Y G
Sbjct: 3 DKDDPLYEIFEKAAKELRGDVRFGVTFDKEVAKKYGIKEPTILLFRKFDEKQVTYPGEDK 62
Query: 137 -DEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVA 195
L+KF+ SLPLV EF E A+++F LL+F K + E V+ VA
Sbjct: 63 TTFDDLKKFIQKNSLPLVGEFTPENAEELFESGK--PLLLFIKKDSEETEKLKNRVEEVA 120
Query: 196 KDFREK 201
K F+ K
Sbjct: 121 KKFKGK 126
>gnl|CDD|239279 cd02981, PDI_b_family, Protein Disulfide Isomerase (PDIb) family,
redox inactive TRX-like domain b; composed of eukaryotic
proteins involved in oxidative protein folding in the
endoplasmic reticulum (ER) by acting as catalysts and
folding assistants. Members of this family include PDI,
calsequestrin and other PDI-related proteins like ERp72,
ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and
PDIR are all oxidases, catalyzing the formation of
disulfide bonds of newly synthesized polypeptides in the
ER. They also exhibit reductase activity in acting as
isomerases to correct any non-native disulfide bonds, as
well as chaperone activity to prevent protein
aggregation and facilitate the folding of newly
synthesized proteins. These proteins contain multiple
copies of a redox active TRX (a) domain containing a
CXXC motif, and one or more redox inactive TRX-like (b)
domains. The molecular structure of PDI is abb'a'. Also
included in this family is the PDI-related protein
ERp27, which contains only redox-inactive TRX-like (b
and b') domains. The redox inactive b domains are
implicated in substrate recognition.
Length = 97
Score = 63.9 bits (156), Expect = 1e-13
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 22/117 (18%)
Query: 30 AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNE 89
KE TS +E++ F+ VVV G FKD SE KTF ++A +
Sbjct: 1 VKELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLR---------------- 44
Query: 90 IASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLS 146
DD F +++ ++ + V +V +FK F+E V Y+G E +L +F+
Sbjct: 45 -----DDYGFGHTSDKEVAKKLKVKPGSVVLFKPFEEEPVEYDGE-FTEESLVEFIK 95
>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional.
Length = 477
Score = 63.6 bits (155), Expect = 5e-12
Identities = 56/191 (29%), Positives = 78/191 (40%), Gaps = 34/191 (17%)
Query: 11 GGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIAS 70
GGRTA+ IV+W+ K TGP E S EIK V G + SEL K F E+A
Sbjct: 123 GGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVAD 182
Query: 71 KVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVN 130
K E AK F + + + + K +EG
Sbjct: 183 K--------HREHAKFFVKKHEG---------------------KNKIYVLHKDEEGVEL 213
Query: 131 YEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEP 190
+ G +E L +F+ST+S PL E N E ++ LV+F Y+ +
Sbjct: 214 FMGKTKEE--LEEFVSTESFPLFAEINAENYRRYISSGKD---LVWFCGTTEDYDKYKSV 268
Query: 191 VQTVAKDFREK 201
V+ VA+ REK
Sbjct: 269 VRKVARKLREK 279
>gnl|CDD|239367 cd03069, PDI_b_ERp57, PDIb family, ERp57 subfamily, first redox
inactive TRX-like domain b; ERp57 (or ERp60) exhibits
both disulfide oxidase and reductase functions like PDI,
by catalyzing the formation of disulfide bonds of newly
synthesized polypeptides in the ER and acting as
isomerases to correct any non-native disulfide bonds. It
also displays chaperone activity to prevent protein
aggregation and facilitate the folding of newly
synthesized proteins. ERp57 contains two redox-active
TRX (a) domains and two redox inactive TRX-like (b)
domains. It shares the same domain arrangement of
abb'a' as PDI, but lacks the C-terminal acid-rich region
(c domain) that is present in PDI. ERp57 interacts with
the lectin chaperones, calnexin and calreticulin, and
specifically promotes the oxidative folding of
glycoproteins. Similar to PDI, the b domain of ERp57 is
likely involved in binding to substrates.
Length = 104
Score = 38.1 bits (89), Expect = 4e-04
Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 27/121 (22%)
Query: 30 AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNE 89
+ E + E + F++D V G F+D S+L F + A + +
Sbjct: 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESF------------- 48
Query: 90 IASKVDDLVFVTSTNADILAEYSVDDDTVAI-----FKKFDEGRVNYEGPASDEAALRKF 144
F +++ +L +Y + V KF++ V ++G D + ++KF
Sbjct: 49 --------RFAHTSDKQLLEKYGYGEGVVLFRPPRLSNKFEDSSVKFDG-DLDSSKIKKF 99
Query: 145 L 145
+
Sbjct: 100 I 100
>gnl|CDD|205018 pfam12683, DUF3798, Protein of unknown function (DUF3798). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 247 and 417 amino
acids in length. Most of the proteins in this family
have an N-terminal lipoprotein attachment site. These
proteins have distant similarity to periplasmic ligand
binding families such as pfam02608, which suggests that
this family have a similar role.
Length = 275
Score = 33.4 bits (77), Expect = 0.058
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 32 EFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDD-----LVFDASSE-LAK 85
E+ + + + D + L + S+E T ++I S DD ++ +
Sbjct: 18 EYRAAEALLEKYGDDMIKHVTLPDNFSTEQETTISKIVSLADDPKVKAIIVSQAVPGTLP 77
Query: 86 TFNEIASKVDDLVFVTSTNADILAEYSVDDDTV 118
F +I K D++ + + + E S D V
Sbjct: 78 AFQKIKEKRPDILLIAAPPHEDPEEMSKVADLV 110
>gnl|CDD|153352 cd07668, BAR_SNX9, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexin 9. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. SNX9, also known as SH3PX1, is a
cytosolic protein that interacts with proteins
associated with clathrin-coated pits such as
Cdc-42-associated tyrosine kinase 2 (ACK2). It binds
class I polyproline sequences found in dynamin 1/2 and
the WASP/N-WASP actin regulators. SNX9 is localized to
plasma membrane endocytic sites and acts primarily in
clathrin-mediated endocytosis. Its array of interacting
partners suggests that SNX9 functions at the interface
between endocytosis and actin cytoskeletal organization.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions.
Length = 210
Score = 31.5 bits (71), Expect = 0.22
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 14/154 (9%)
Query: 57 ASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVD-----DLVFVTSTNADILAEY 111
A LA F+ + + + DA +E KT+ EIAS V DL F+ TN +
Sbjct: 56 ALQSLATVFSTSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMETNHEYKGFL 115
Query: 112 SVDDDTVAI-------FKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKI 164
D + K+ D+ + D+ + K +ST S L E NH + +I
Sbjct: 116 GCFPDIIGAHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSTMSYALQAEMNHFHSNRI 175
Query: 165 FGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
+ + S + ++ + YE+ E ++ F
Sbjct: 176 Y--DYNSVIRLYLEQQVQFYETIAEKLRQALSRF 207
>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family,
redox active TRX domains; composed of eukaryotic
proteins involved in oxidative protein folding in the
endoplasmic reticulum (ER) by acting as catalysts and
folding assistants. Members of this family include PDI
and PDI-related proteins like ERp72, ERp57 (or ERp60),
ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI,
ERp57, ERp72, P5, PDIR and ERp46 are all oxidases,
catalyzing the formation of disulfide bonds of newly
synthesized polypeptides in the ER. They also exhibit
reductase activity in acting as isomerases to correct
any non-native disulfide bonds, as well as chaperone
activity to prevent protein aggregation and facilitate
the folding of newly synthesized proteins. These
proteins usually contain multiple copies of a redox
active TRX (a) domain containing a CXXC motif, and may
also contain one or more redox inactive TRX-like (b)
domains. Only one a domain is required for the oxidase
function but multiple copies are necessary for the
isomerase function. The different types of PDIs may show
different substrate specificities and tissue-specific
expression, or may be induced by stress. PDIs are in
their reduced form at steady state and are oxidized to
the active form by Ero1, which is localized in the ER
through ERp44. Some members of this family also contain
a DnaJ domain in addition to the redox active a domains;
examples are ERdj5 and Pfj2. Also included in the family
is the redox inactive N-terminal TRX-like domain of
ERp29.
Length = 101
Score = 29.9 bits (68), Expect = 0.31
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 62 AKTFNEIASKVDD-LV-FDA-----SSELAKTFNEIASKV---DDLVFVT---STNADIL 108
F+E+ D LV F A LA + ++A ++ +V + N D+
Sbjct: 5 DDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLC 64
Query: 109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL 145
+EY V T+ +F + V YEGP +L +F+
Sbjct: 65 SEYGVRGYPTIKLFPNGSKEPVKYEGP-RTLESLVEFI 101
>gnl|CDD|239280 cd02982, PDI_b'_family, Protein Disulfide Isomerase (PDIb') family,
redox inactive TRX-like domain b'; composed of
eukaryotic proteins involved in oxidative protein
folding in the endoplasmic reticulum (ER) by acting as
catalysts and folding assistants. Members of this family
include PDI, calsequestrin and other PDI-related
proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and
PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases,
catalyzing the formation of disulfide bonds of newly
synthesized polypeptides in the ER. They also exhibit
reductase activity in acting as isomerases to correct
any non-native disulfide bonds, as well as chaperone
activity to prevent protein aggregation and facilitate
the folding of newly synthesized proteins. These
proteins contain multiple copies of a redox active TRX
(a) domain containing a CXXC motif, and one or more
redox inactive TRX-like (b) domains. The molecular
structure of PDI is abb'a'. Also included in this family
is the PDI-related protein ERp27, which contains only
redox-inactive TRX-like (b and b') domains. The redox
inactive domains are implicated in substrate recognition
with the b' domain serving as the primary substrate
binding site. Only the b' domain is necessary for the
binding of small peptide substrates. In addition to the
b' domain, other domains are required for the binding of
larger polypeptide substrates. The b' domain is also
implicated in chaperone activity.
Length = 103
Score = 29.9 bits (68), Expect = 0.35
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 160 TAQKIFGGEI--KSHLLVFFSKAAGHYESHFEPVQTVAKDFREK 201
A+ F E K L++F++K E E + VAK F+ K
Sbjct: 1 NAETFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK 44
>gnl|CDD|218290 pfam04847, Calcipressin, Calcipressin. Calcipressin is also known
as calcineurin-binding protein, since it inhibits
calcineurin-mediated transcriptional modulation by
binding to calcineurin's catalytic domain.
Length = 177
Score = 30.5 bits (69), Expect = 0.37
Identities = 27/84 (32%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 97 LVFVTSTNADILAEYSV---DDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLV 153
LVFV N D L E T K F RVN+ P + AA K L S L
Sbjct: 2 LVFVNPDNKDKLRELFRQYNPIVTFQPLKSFRRVRVNFSSPEAAAAARIK-LHEGSEFLG 60
Query: 154 VEFNHETAQKIFGGEI--KSHLLV 175
E AQ K HL
Sbjct: 61 KELKLYFAQPQHPERSAAKQHLAP 84
>gnl|CDD|181432 PRK08453, fliD, flagellar capping protein; Validated.
Length = 673
Score = 29.8 bits (67), Expect = 1.1
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 55 KDASSELAKTFNEIASKVDDLV-FDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSV 113
D+ E K +NE+ K+D+ +DA +++A FN V D+ + S+ ++ +
Sbjct: 484 IDSLKEFVKAYNELIPKLDEDTRYDADTKIAGIFN----GVGDIRSIRSSLNNVFSYSVH 539
Query: 114 DDDTVAIFKKF-----DEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGE 168
D+ V K+ ++G + DEA L L++ F ++ + G E
Sbjct: 540 TDNGVESLMKYGLSLDEKGVMTL-----DEAKLSSALNSDPKATQDFFYGSDSKDMGGRE 594
Query: 169 I 169
I
Sbjct: 595 I 595
>gnl|CDD|219887 pfam08532, Glyco_hydro_42M, Beta-galactosidase trimerisation
domain. This is non catalytic domain B of
beta-galactosidase enzymes belong to the glycosyl
hydrolase 42 family. This domain is related to glutamine
amidotransferase enzymes, but the catalytic residues are
replaced by non functional amino acids. This domain is
involved in trimerisation.
Length = 207
Score = 29.1 bits (66), Expect = 1.2
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 100 VTSTNADILAEYSVD--DDTVAI-FKKFDEGRVNYEGPASDEAALRKFLS 146
+ T A++LA Y D T A+ + +G+ Y G D L L
Sbjct: 149 IHPTGAEVLATYQDDFYAGTPAVTRNNYGKGKAYYLGSRLDPDGLDALLE 198
>gnl|CDD|221435 pfam12132, DUF3587, Protein of unknown function (DUF3587). This
protein is found in viruses. Proteins in this family are
typically between 209 and 248 amino acids in length.
Length = 201
Score = 28.8 bits (65), Expect = 1.5
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 13 RTAED---I-VNWLLKKTG---PPA-KEFTSVDEIKAFI 43
RT ED I V+ LL G PP EFTS+ E+ F+
Sbjct: 84 RTEEDRILINVDSLLPIFGGIVPPGMDEFTSISELHNFV 122
>gnl|CDD|178283 PLN02679, PLN02679, hydrolase, alpha/beta fold family protein.
Length = 360
Score = 29.0 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 10/40 (25%)
Query: 112 SVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLP 151
+VDD+ V I + GPA DE AL F+S + P
Sbjct: 250 AVDDELVEIIR----------GPADDEGALDAFVSIVTGP 279
>gnl|CDD|218429 pfam05097, DUF688, Protein of unknown function (DUF688). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana.
Length = 446
Score = 28.6 bits (63), Expect = 2.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 184 YESHFEPVQTVAKDFREKEEQDEDDD 209
Y F P + D ++EE+DE+DD
Sbjct: 211 YRVSFAPNYYLNNDIDDEEEEDENDD 236
>gnl|CDD|225543 COG2996, COG2996, Predicted RNA-bindining protein (contains S1
and HTH domains) [General function prediction only].
Length = 287
Score = 28.5 bits (64), Expect = 3.0
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 16 EDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDL 75
ED LL K+ P E DE+ FI + D+ L T E + V +
Sbjct: 27 EDGTTILLPKSEPEEDELEVGDEVTVFI----------YVDSEDRLIATTREPKATVGEY 76
>gnl|CDD|236084 PRK07739, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 507
Score = 28.4 bits (64), Expect = 3.3
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 61 LAKTFNEIASKVDDLVFDASSEL---AKTFNEIASKVDDL 97
LA+TFN ++ + D+ D SE+ K N +AS++ DL
Sbjct: 151 LAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDL 190
>gnl|CDD|182079 PRK09793, PRK09793, methyl-accepting protein IV; Provisional.
Length = 533
Score = 28.1 bits (62), Expect = 4.0
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 38 EIKAFIADSKVVV---AGLFKDASSELAKTFNEIAS---KVDDL---VFDASSELAKTFN 88
EIK I +S V + L +A A T +I S +V+D+ + AS E +
Sbjct: 412 EIKGLIEESVNRVQQGSKLVNNA----AATMTDIVSSVTRVNDIMGEIASASEEQRRGIE 467
Query: 89 EIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148
++A V + VT NA ++ E +V + +A RV E A + Q
Sbjct: 468 QVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRVAVFTLEEHEVARHESAQLQ 527
Query: 149 SLPLV 153
P+V
Sbjct: 528 IAPVV 532
>gnl|CDD|233894 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK. The
flagellar hook-associated protein FlgK of bacterial
flagella has conserved N- and C-terminal domains. The
central region is highly variable in length and
sequence, and often contains substantial runs of
low-complexity sequence. This model is built from an
alignment of FlgK sequences with the central region
excised. Note that several other proteins of the
flagellar apparatus also are homologous in the N- and
C-terminal regions to FlgK, but are excluded from this
model [Cellular processes, Chemotaxis and motility].
Length = 324
Score = 28.1 bits (63), Expect = 4.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 54 FKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDL 97
F +A ELAK + A + V +++ LA FN+ +S++ DL
Sbjct: 112 FFNALQELAKNPDSEALR--QAVLESAQALANQFNQTSSELQDL 153
>gnl|CDD|185008 PRK15048, PRK15048, methyl-accepting chemotaxis protein II;
Provisional.
Length = 553
Score = 27.7 bits (61), Expect = 5.1
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 38 EIKAFIADS--KVVVAGLFKDASSELAKTFNEIASKVDDL---VFDASSELAKTFNEIAS 92
EIKA I DS +V + +++ E ++V D+ + AS E ++ +++A
Sbjct: 414 EIKALIEDSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVAL 473
Query: 93 KVDDLVFVTSTNADILAE 110
V ++ VT NA ++ E
Sbjct: 474 AVSEMDRVTQQNASLVQE 491
>gnl|CDD|224348 COG1431, COG1431, Argonaute homolog, implicated in RNA metabolism
[Translation, ribosomal structure and biogenesis].
Length = 685
Score = 27.5 bits (61), Expect = 5.5
Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 11 GGRTAEDIVNWLLKKTGPPAKEFTSV--DEIKAFIADSKVVV-AGLFKDASSELAKTFNE 67
G I N L P K ++ +EI + DS+++ K N
Sbjct: 315 GTEGKTTIDNVNLFCYLPYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKVVYGFKNSNG 374
Query: 68 IASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDE 126
I KV+ L +A ++ + ++ E DD AI K+ DE
Sbjct: 375 IDWKVEGLTL----HVAGKRPKMKDDLTKIIKEIDVEELKKQEMYKDDVKYAILKRLDE 429
>gnl|CDD|241084 cd12640, RRM3_Bruno_like, RNA recognition motif 3 in Drosophila
melanogaster Bruno protein and similar proteins. This
subgroup corresponds to the RRM3 of Bruno protein, a
Drosophila RNA recognition motif (RRM)-containing
protein that plays a central role in regulation of
Oskar (Osk) expression. It mediates repression by
binding to regulatory Bruno response elements (BREs) in
the Osk mRNA 3' UTR. The full-length Bruno protein
contains three RRMs, two located in the N-terminal half
of the protein and the third near the C-terminus,
separated by a linker region. .
Length = 79
Score = 25.7 bits (56), Expect = 6.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 31 KEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
+EFT D + F+ V+ A +F D + L+K F
Sbjct: 14 QEFTDTDLAQTFLPFGNVISAKVFIDKQTNLSKCF 48
>gnl|CDD|185226 PRK15326, PRK15326, type III secretion system needle complex
protein PrgI; Provisional.
Length = 80
Score = 25.9 bits (56), Expect = 6.4
Identities = 14/65 (21%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 65 FNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSV----DDDTVAI 120
+++++K D V + +++ + +++A+K D + + + L+EY++ +TV +
Sbjct: 9 LDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSK-LSEYNLYRNAQSNTVKV 67
Query: 121 FKKFD 125
FK D
Sbjct: 68 FKDID 72
>gnl|CDD|215167 PLN02296, PLN02296, carbonate dehydratase.
Length = 269
Score = 27.0 bits (60), Expect = 7.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 27 GPPAK---EFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEI 68
G PAK + T +E AFI+ S + L + ++E AK+F+EI
Sbjct: 183 GNPAKFLRKLT--EEEIAFISQSATNYSNLAQVHAAENAKSFDEI 225
>gnl|CDD|223910 COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility
and secretion / Signal transduction mechanisms].
Length = 408
Score = 27.3 bits (60), Expect = 7.2
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 16 EDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDL 75
++ + + + E A V + + E+A E++ + +
Sbjct: 295 GLLIEEIQNEA----ADAVEHMEESASEVSEGVKLVEETGSSLGEIAAAIEEVSQLISE- 349
Query: 76 VFDASSELAKTFNEIASKVDDLVFVTSTNADILAE 110
+ A+ E EI + +++L VT NA + E
Sbjct: 350 IAAATEEQTAVLEEINASIEELDDVTQENAAAVEE 384
>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell
envelope biogenesis, outer membrane].
Length = 475
Score = 27.3 bits (61), Expect = 7.8
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 87 FNEIASKVDDLVFVTSTN------ADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAA 140
IA ++ D+V VTS N A ILA+ I E YE E A
Sbjct: 379 MGAIAEQLADIVIVTSDNPRSEDPAVILAD---------ILAGI-EAPEKYEIIEDREEA 428
Query: 141 LRKFLST-QSLPLVVEF--NHETAQKIFGGEIKSHL 173
+RK L + +V+ HET Q + E+K
Sbjct: 429 IRKALDLAKEGDVVLIAGKGHETYQIM--LELKRPF 462
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 27.2 bits (60), Expect = 9.3
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 93 KVDDLVFV----TSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ 148
K+ LV + ++TNA +LAEY FK+ V P + + L+ +
Sbjct: 196 KLHGLVVIGGDDSNTNAAVLAEY---------FKRNSSSTVVVGCPKTIDGDLKNEVIET 246
Query: 149 SLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHY 184
S F ++TA K + +I S + ++ G+Y
Sbjct: 247 S------FGYDTAVKTYSEQIGSIMDAIKTEGYGYY 276
>gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA
protein. Members of this protein family are BoxA, the A
component of the BoxAB benzoyl-CoA oxygenase/reductase.
This oxygen-requiring enzyme acts in an aerobic pathway
of benzoate catabolism via coenzyme A ligation. BoxA is
a homodimeric iron-sulphur-flavoprotein and acts as an
NADPH-dependent reductase for BoxB [Energy metabolism,
Other].
Length = 411
Score = 26.8 bits (59), Expect = 9.5
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 147 TQSLPL--VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQ 204
T S P+ + E GG+ L++FF +F P+Q + KDF +
Sbjct: 277 TGSAPMRAMTERRRRRRDHGEGGK----LMLFFGARTKEELPYFGPLQKLPKDFIDINFA 332
Query: 205 -DEDDDQPKR 213
+QPKR
Sbjct: 333 FSRTPEQPKR 342
>gnl|CDD|215206 PLN02362, PLN02362, hexokinase.
Length = 509
Score = 26.8 bits (59), Expect = 9.5
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 169 IKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQPKRDEL 216
I HL+ S E F+ + + K F EKEE + Q +R EL
Sbjct: 131 IPQHLMNSTS------EVLFDFIASSLKQFVEKEENGSEFSQVRRREL 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.365
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,126,589
Number of extensions: 1050136
Number of successful extensions: 1061
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 57
Length of query: 216
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 123
Effective length of database: 6,812,680
Effective search space: 837959640
Effective search space used: 837959640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.7 bits)