RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7942
(216 letters)
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 129 bits (326), Expect = 2e-36
Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 23/189 (12%)
Query: 13 RTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV 72
+ + A ++ + S+V V G FK
Sbjct: 2 HHSSGLEVLFQGPGSEFATTLPDGAAAESLVESSEVAVIGFFK----------------- 44
Query: 73 DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYE 132
D S+ AK F + A +DD+ F ++N+D+ ++Y +D D V +FKKFDEGR N+E
Sbjct: 45 -----DVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFE 99
Query: 133 GPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQ 192
G + E L F+ LPLV+EF +TA KIFGGEIK+H+L+F K+ Y+ +
Sbjct: 100 GEVTKE-NLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFK 158
Query: 193 TVAKDFREK 201
T A+ F+ K
Sbjct: 159 TAAESFKGK 167
Score = 34.3 bits (78), Expect = 0.025
Identities = 28/204 (13%), Positives = 63/204 (30%), Gaps = 15/204 (7%)
Query: 11 GGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSE----LAKTFN 66
G T E++++++ P EFT K F + K + LF S F
Sbjct: 100 GEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHIL-LFLPKSVSDYDGKLSNFK 158
Query: 67 EIASKVDDLVF--------DASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTV 118
A + + + + F + + +T + ++ T
Sbjct: 159 TAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTA 218
Query: 119 AIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFS 178
+F + EG ++ V + + + E K+ + F++
Sbjct: 219 ERITEFCHRFL--EGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYA 276
Query: 179 KAAGHYESHFEPVQTVAKDFREKE 202
GH + + + +++ E
Sbjct: 277 PWCGHCKQLAPIWDKLGETYKDHE 300
Score = 26.6 bits (58), Expect = 8.1
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 11 GGRTAEDIVNWLLKKTGPPA 30
G RT + +L A
Sbjct: 341 GERTLDGFKKFLESGGQDGA 360
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 122 bits (306), Expect = 1e-33
Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 23/200 (11%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADS-KVVVAGLFKDASSELAKT 64
E G A+ +V +LL P + S E++AF ++ + G FK SE K
Sbjct: 101 TIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKA 160
Query: 65 FNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKF 124
F E A + F + + + + S+ + V ++ F
Sbjct: 161 FEEAAEHFQP---------------------YIKFFATFDKGVAKKLSLKMNEVDFYEPF 199
Query: 125 DEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKS-HLLVFFSKAAGH 183
+ + E L +F+ P + E + + ++ H++ F ++
Sbjct: 200 MDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPD 259
Query: 184 YESHFEPVQTVAKDFREKEE 203
E ++ VA+D + +
Sbjct: 260 GYEFLEILKQVARDNTDNPD 279
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 120 bits (301), Expect = 1e-32
Identities = 33/198 (16%), Positives = 74/198 (37%), Gaps = 23/198 (11%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSK-VVVAGLFKDASSELAKT 64
E G +A+ +V +LL P + E++AF + + G FK+ SE K
Sbjct: 103 VIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKA 162
Query: 65 FNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKF 124
F E A + + F + ++ + + ++ + + ++ F
Sbjct: 163 FKEAAEEFHP---------------------YIPFFATFDSKVAKKLTLKLNEIDFYEAF 201
Query: 125 DEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKS-HLLVFFSKAAGH 183
E V + E + F+ + + E+ + + ++ H++ F +A
Sbjct: 202 MEEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPD 261
Query: 184 YESHFEPVQTVAKDFREK 201
E +++VA+D +
Sbjct: 262 GYEFLEILKSVAQDNTDN 279
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 113 bits (283), Expect = 5e-30
Identities = 25/195 (12%), Positives = 59/195 (30%), Gaps = 24/195 (12%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
E RG R+ + + +++ ++ P +E + EI + ++
Sbjct: 96 KREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIG-------------- 141
Query: 66 NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKK-F 124
S+ + F +A+ + D S D+ D +
Sbjct: 142 ---------YFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGH 192
Query: 125 DEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHY 184
+ Y G ++ ++ + +PLV E E +++ + +L +
Sbjct: 193 SAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESL 252
Query: 185 ESHFEPVQTVAKDFR 199
E V +
Sbjct: 253 EIFQNEVARQLISEK 267
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo
sapiens}
Length = 252
Score = 100 bits (250), Expect = 3e-26
Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 28/182 (15%)
Query: 26 TGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAK 85
P + + +E K FI+D + G F D+ SE F + AS +
Sbjct: 4 GSPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNL------------- 50
Query: 86 TFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFK------KFDEGRVNYEGPASDEA 139
D+ F + ++ EY + + + +F+ KF++ V Y
Sbjct: 51 --------RDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSG 102
Query: 140 ALRKFLSTQSLPLVVEFNHETAQKIFGGEIK-SHLLVFFSKAAGHYESHFEPVQTVAKDF 198
++KF+ + + I G ++ ++ V + K A V VAK F
Sbjct: 103 KIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKF 162
Query: 199 RE 200
+
Sbjct: 163 LD 164
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain,
peptide binding; NMR {Homo sapiens}
Length = 124
Score = 92.3 bits (229), Expect = 2e-24
Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 29/144 (20%)
Query: 14 TAEDIVNWLLKKTGPPAKE----FTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIA 69
+ GP A + T V FIA ++V V G F+D + +
Sbjct: 3 HHHHHMEVEKSSDGPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMV 62
Query: 70 SKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRV 129
K + F S+ ++++L Y++ +T+ +F+ D ++
Sbjct: 63 QKFPGVSFGIST----------------------DSEVLTHYNITGNTICLFRLVDNEQL 100
Query: 130 NYEGPAS---DEAALRKFLSTQSL 150
N E D L +F+ SL
Sbjct: 101 NLEDEDIESIDATKLSRFIEINSL 124
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 98.8 bits (245), Expect = 3e-24
Identities = 45/207 (21%), Positives = 79/207 (38%), Gaps = 28/207 (13%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
G G RTA+ IV+ L K+ GP + + +E K FI+D + G F D+ SE F
Sbjct: 88 AGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEF 147
Query: 66 NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFK--- 122
+ AS + D+ F + ++ EY + + + +F+
Sbjct: 148 LKAASNLR---------------------DNYRFAHTNVESLVNEYDDNGEGIILFRPSH 186
Query: 123 ---KFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIK-SHLLVFFS 178
KF++ V Y ++KF+ + + I G ++ ++ V +
Sbjct: 187 LTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYE 246
Query: 179 KAAGHYESHFEPVQTVAKDFREKEEQD 205
K A V VAK F + +
Sbjct: 247 KNAKGSNYWRNRVMMVAKKFLDAGHKL 273
Score = 32.5 bits (73), Expect = 0.086
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIAD 45
P + GGR D +++L ++ P + K +
Sbjct: 440 PKKYEGGRELSDFISYLQREATNPPVIQEEKPKKKKKAQE 479
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic
reticulum, glycoprotein, redox-active center; 1.92A
{Rattus norvegicus}
Length = 250
Score = 85.6 bits (211), Expect = 1e-20
Identities = 31/186 (16%), Positives = 67/186 (36%), Gaps = 32/186 (17%)
Query: 26 TGPPAKEFTSVDEIKAFIADS-KVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELA 84
PP+KE ++ +++ F+ D VV+ G+F+ + + A+ +
Sbjct: 4 GSPPSKEILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTL------------ 51
Query: 85 KTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFK------KFDEGRVNYEGPAS-D 137
+D F + + +I V + + + K++ + S +
Sbjct: 52 ---------REDYKFHHTFSTEIAKFLKVSLGKLVLMQPEKFQSKYEPRMHVMDVQGSTE 102
Query: 138 EAALRKFLSTQSLPLVVEFNHETAQKIFGGE---IKSHLLVFFSKAAGHYESHFEPVQTV 194
+A++ ++ +LPLV K + + + + F + V V
Sbjct: 103 ASAIKDYVVKHALPLVGHRKTSNDAKRYSKRPLVVVYYSVDFSFDYRTATQFWRNKVLEV 162
Query: 195 AKDFRE 200
AKDF E
Sbjct: 163 AKDFPE 168
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 83.6 bits (206), Expect = 2e-19
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 6/169 (3%)
Query: 10 RGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIA 69
G RT IV++ L + K+F +D + + + S + LF +++ + IA
Sbjct: 125 SGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSK-QDKISPVYKSIA 183
Query: 70 SKVDDLV---FDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDE 126
++ +L + + + I + D + +F +
Sbjct: 184 LDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKD 243
Query: 127 GRVNYEGPASDEAALRKFLSTQS--LPLVVEFNHETAQKIFGGEIKSHL 173
YEG + ++ + KFL P F+ + + K +
Sbjct: 244 KFWEYEGNSINKNDISKFLRDTFSITPNEGPFSRRSEYIAYLKTGKKPI 292
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 72.2 bits (176), Expect = 5e-15
Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 31/198 (15%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
+ G RTAE IV +++K++ P + A V+ ++ TF
Sbjct: 101 SIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQ-SGKIDADFNATF 159
Query: 66 NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
+A+K +D FV++ NAD + S+ + D
Sbjct: 160 YSMANKH---------------------FNDYDFVSAENADDDFKLSIY-----LPSAMD 193
Query: 126 EGRV--NYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGH 183
E V + +D K+L ++LP E + + + L F
Sbjct: 194 EPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGL--PLGYLFYNDEEE 251
Query: 184 YESHFEPVQTVAKDFREK 201
E + +AK R
Sbjct: 252 LEEYKPLFTELAKKNRGL 269
Score = 39.1 bits (90), Expect = 6e-04
Identities = 6/55 (10%), Positives = 19/55 (34%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSE 60
+G R+ + + +++ + +E + A+ A L + +
Sbjct: 446 SVVYQGSRSLDSLFDFIKENGHFDVDGKALYEEAQEKAAEEADADAELADEEDAI 500
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone,
endoplasmic reticulum, isomeras membrane, redox-active
center; 2.20A {Homo sapiens}
Length = 147
Score = 65.1 bits (158), Expect = 1e-13
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 141 LRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE 200
+ LPLV+EF +TA KIFGGEIK+H+L+F K+ Y+ +T A+ F+
Sbjct: 4 HHHHMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG 63
Query: 201 K 201
K
Sbjct: 64 K 64
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 60.5 bits (146), Expect = 5e-11
Identities = 26/201 (12%), Positives = 53/201 (26%), Gaps = 23/201 (11%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
+ G R+ E +V + ++ E ++ I + G S+
Sbjct: 200 AVKYNGDRSKESLVAFAMQHVRSTVTELST-GNFVNAIETAFAAGVGWLITFCSKGEDCL 258
Query: 66 NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFV----TSTNADILAEYSVDDDTVAIF 121
+T ++ +D LV V + T A F
Sbjct: 259 TS-----------------QTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYF 301
Query: 122 KKFDEGRVNYEGPASDEAALR-KFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKA 180
+ +L K + + + + +F +A ++ LVFF
Sbjct: 302 PPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFG 361
Query: 181 AGHYESHFEPVQTVAKDFREK 201
+ E + E
Sbjct: 362 KNENANDPELKKLKTLLKNEH 382
Score = 50.1 bits (119), Expect = 2e-07
Identities = 25/206 (12%), Positives = 62/206 (30%), Gaps = 29/206 (14%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPAKEFT--SVDEIKAFIADSKVVVAGLFKDASSELAK 63
E G +AE I+ ++ P T + +E+ +V + + S
Sbjct: 521 IHEYEGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQV 580
Query: 64 TFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD----ILAEYSVDD-DTV 118
L + +A + L+ V S + + +V +
Sbjct: 581 -------------------LMPEWKRMARTLTGLINVGSVDCGQYHSFCTQENVQRYPEI 621
Query: 119 AIFKKFDEGRVNYEGPAS---DEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLV 175
+ + Y D +LR + ++ +T + ++
Sbjct: 622 RFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVD 681
Query: 176 FFSKAAGHYESHFEPVQTVAKDFREK 201
F++ +G ++ + +A+ + K
Sbjct: 682 FYAPWSGPSQNFAPEFELLARMIKGK 707
Score = 32.0 bits (72), Expect = 0.14
Identities = 23/131 (17%), Positives = 40/131 (30%), Gaps = 8/131 (6%)
Query: 78 DASSELAKTFNEIASKVDDLVFVTSTNAD----ILAEYSVDDD-TVAIFKKFDEGRVNYE 132
S +LA T+ E A +VD L+ + + N + V+ ++ IF+ V Y
Sbjct: 146 SHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS-GMAAVKYN 204
Query: 133 GPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQ 192
G S E +L F V E + + + + E
Sbjct: 205 GDRSKE-SLVAFAMQHVRSTVTELSTGNFVNAIETA-FAAGVGWLITFCSKGEDCLTSQT 262
Query: 193 TVAKDFREKEE 203
+
Sbjct: 263 RLRLSGMLDGL 273
Score = 32.0 bits (72), Expect = 0.16
Identities = 21/197 (10%), Positives = 56/197 (28%), Gaps = 24/197 (12%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
A++I ++ P E S ++++ +A + +V F +
Sbjct: 314 SVLFLNSLDAKEIYMEIIHN--LPDFELLSANQLEDRLAHHRWLVFFHFGKNENANDPEL 371
Query: 66 NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
++ + + + + + F S+ I ++ V ++A+FK
Sbjct: 372 KKLKTLLKN-----------------EHIQVVRFDCSSAPGICSDLYVFQPSLAVFKGQG 414
Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
+ F V + + + L+ FF+ +
Sbjct: 415 TKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQNFPA---SDKEPWLVDFFAPWSPPSR 471
Query: 186 SHFEPV-QTVAKDFREK 201
P + + +
Sbjct: 472 -ALLPELRKASTLLYGQ 487
Score = 29.7 bits (66), Expect = 0.88
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDE 38
E+ R A+ I + K + +
Sbjct: 746 WEEQINSRDAKTIAALIYGKLETLQSQVKRNKD 778
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 57.2 bits (138), Expect = 3e-10
Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 28/158 (17%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSV------DEIKAFIADSKVVVAGLFKDAS- 58
+ G RT E+IV + + + P V + + D+ +++ +
Sbjct: 101 AVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCG 160
Query: 59 --SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDD 116
+LA + + AK ++ + + + D+ + V
Sbjct: 161 HCKKLAPEYE---------------KAAKELSKRSPPIPLAKVDATAETDLAKRFDV--S 203
Query: 117 TVAIFKKFDEGR-VNYEGPASDEAALRKFLSTQSLPLV 153
K F +GR +Y GP ++ + ++ QS
Sbjct: 204 GYPTLKIFRKGRPYDYNGP-REKYGIVDYMIEQSGAAA 240
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Length = 133
Score = 45.2 bits (107), Expect = 1e-06
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 149 SLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK 201
PL+ E ET I L F++ A + + ++ +A+ R
Sbjct: 4 GSPLIGEIGPETYSDYMSAGIP--LAYIFAETAEERKELSDKLKPIAEAQRGV 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-06
Identities = 32/171 (18%), Positives = 52/171 (30%), Gaps = 60/171 (35%)
Query: 54 FKDASSELAKTFNEIASKVDDLVFDASSE-LAKT--------------FNEIASKVDDLV 98
D + K F EI F + L+ T F ++ SK
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK----- 1750
Query: 99 FVTSTNADILA-----EYS-------VDD--DTVAI-FK----------KFDEGRVNYEG 133
+ +A A EY+ V V + F + + GR NY
Sbjct: 1751 GLIPADA-TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 134 PASDEAALRKFLSTQSLPLVVE--------------FNHETAQKIFGGEIK 170
A + + S ++L VVE +N E Q + G+++
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR 1860
Score = 40.0 bits (93), Expect = 4e-04
Identities = 40/207 (19%), Positives = 64/207 (30%), Gaps = 71/207 (34%)
Query: 16 EDI---VNWLLKKTGPPAKEFTSVDEIKAFIA--------DSKVVVAGLFKDASS----- 59
DI LL++ + + IK +I K + LF+
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 60 ---------------ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTN 104
EL + V DL+ + A+T +E+ D V +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS----AETLSELIRTTLDAEKVFTQG 212
Query: 105 ADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ--SLPL--VVEFNH-E 159
+IL +T P D +L + S PL V++ H
Sbjct: 213 LNILEWLENPSNT----------------PDKD------YLLSIPISCPLIGVIQLAHYV 250
Query: 160 TAQKIFG---GEIKSHLLVFFSKAAGH 183
K+ G GE++S+L A GH
Sbjct: 251 VTAKLLGFTPGELRSYL----KGATGH 273
Score = 37.7 bits (87), Expect = 0.002
Identities = 41/276 (14%), Positives = 76/276 (27%), Gaps = 105/276 (38%)
Query: 17 DIVNWLLKKTGPPAKEFTS-------------------------------VDEIKAFIAD 45
+I+ WL + P K++ +K
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 46 SK-VVVAGLFKDASSELAKTFNEIASKVDDLVF-------DASSELAKTFNEIASKVDD- 96
S+ +V A A ++ ++F K ++F +A + + + +++
Sbjct: 274 SQGLVTAVAI--AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 97 -------LV-----------FVTSTNADILAEYSVDDDTVAIFKKFDEGRVNY--EGPAS 136
L +V TN+ + A V +++ G N GP
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV---EISLVN----GAKNLVVSGPPQ 384
Query: 137 D----EAALRK-------------F------LSTQSLPLVVEFNH----ETAQKIFGGEI 169
LRK F S + LP+ F H A + ++
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-HSHLLVPASDLINKDL 443
Query: 170 KSHLLVFFSKAAGHYESHFEPV-QTV-AKDFREKEE 203
+ + F +K PV T D R
Sbjct: 444 VKNNVSFNAKDIQ------IPVYDTFDGSDLRVLSG 473
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 6e-05
Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 30/167 (17%)
Query: 56 DASSELAKTFNEIASKVDD-----------LVFD--ASSELAKTFNEIASKVDDLVFVTS 102
D SS + + I +++ LV +++ FN ++ K+ +T+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKI----LLTT 272
Query: 103 TNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFL--STQSLPLVVEFNHET 160
+ S T E ++ L K+L Q LP V +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 161 AQKIFGGEIKSHLLVF-FSKAAGHYESHFEPVQTVAKDFREKEEQDE 206
I I+ L + K H + + T+ + E E
Sbjct: 329 RLSIIAESIRDGLATWDNWK---HVN--CDKLTTIIESSLNVLEPAE 370
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 40.1 bits (94), Expect = 9e-05
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 11 GGRTAEDIVNWLLKKTGPPAKEFTSVDEIKA 41
G RT E+IV + + + P V +
Sbjct: 108 GSRTQEEIVAKVREVSQPDWTPPPEVTSGPS 138
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 39.2 bits (92), Expect = 1e-04
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 10 RGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKA 41
+G RT +D +N++ K + +S +
Sbjct: 93 QGPRTKKDFINFISDKEWKSIEPVSSWFSGPS 124
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 38.8 bits (91), Expect = 2e-04
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPA 30
P E GR A+DIVNWL K+TGP A
Sbjct: 96 PKEYTAGREADDIVNWLKKRTGPAA 120
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 35.0 bits (80), Expect = 0.010
Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 8/86 (9%)
Query: 11 GGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIAS 70
G I WL + + + + + E + +
Sbjct: 103 GAVKVGAIQRWLKGQGVYLGMPGC--------LPVYDALAGEFIRASGVEARQALLKQGQ 154
Query: 71 KVDDLVFDASSELAKTFNEIASKVDD 96
V + + A+ + +I K+ D
Sbjct: 155 DNLSSVKETQKKWAEQYLKIMGKILD 180
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 33.1 bits (76), Expect = 0.022
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 6 PGERRGGRTAEDIVNWLLK--KTGPPA 30
P + +GGRT E IV+ L ++GP +
Sbjct: 103 PEDYQGGRTGEAIVDAALSALRSGPSS 129
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 32.0 bits (73), Expect = 0.056
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 6 PGERRGGRTAEDIVNWLLKK---TGPPAKEFTSVDE 38
P + GGRT DIV+ L PP + S
Sbjct: 96 PVDYDGGRTRSDIVSRALDLFSDNAPPPELLESGPS 131
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 33.1 bits (76), Expect = 0.057
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 8 ERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNE 67
R G+ +D +W +T P ++ V E K + V F +++A +
Sbjct: 54 SRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDVV--FSGLDADVAGDIEK 111
Query: 68 IASKVDDLVFDASS 81
+ V +
Sbjct: 112 SFVEAGLAVVSNAK 125
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B
polymer alpha family polymerase, transferase; 2.10A
{Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A
2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A*
4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Length = 775
Score = 32.0 bits (73), Expect = 0.15
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 138 EAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFF---SKAAGHYESHFEPVQTV 194
L L + V E +K+ E+ LV ++ Y++ V V
Sbjct: 624 ARVLEAILKHGDVEEAVRIVKEVTEKLSKYEVPPEKLVIHEQITRDLRDYKATGPHVA-V 682
Query: 195 AK 196
AK
Sbjct: 683 AK 684
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 30.4 bits (69), Expect = 0.17
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 11 GGRTAEDIVNWLLKKTGPPA 30
G RT ED++ ++ + A
Sbjct: 101 GSRTVEDLIKFIAENGKYKA 120
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 29.2 bits (66), Expect = 0.38
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 6 PGERRGGRTAEDIVNWLLKK 25
E GGR + + ++L +
Sbjct: 91 VSEHSGGRDLDSLHRFVLSQ 110
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 28.9 bits (65), Expect = 0.56
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 5 LPGERRGGRTAEDIVNWLLKKTGPPAKE 32
+ E+ R A+ I + K +
Sbjct: 91 IWEEQINSRDAKTIAALIYGKLETLQSQ 118
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 28.5 bits (64), Expect = 0.94
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 11 GGRTAEDIVNWLLKKTGPPAK 31
G R E + ++ + ++
Sbjct: 102 GNRDLEHLSKFIDEHATKRSR 122
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 29.0 bits (66), Expect = 0.98
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 6/47 (12%)
Query: 60 ELAKTFNEIASKVDDLVF---DASSELAKTFNEIASKVDDLVFVTST 103
E + + E+ D+V + K+D +
Sbjct: 16 EAVEKYKELK---PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVC 59
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide
synthase, transferase, acyltransferase; HET: HC4; 1.60A
{Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Length = 387
Score = 28.8 bits (64), Expect = 1.2
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 66 NEIASK-VDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106
+++ K V +L +A+ + K + + SK+ L+ D
Sbjct: 91 HKMQVKGVAELGKEAALKAIKEWGQPKSKITHLIVCCLAGVD 132
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
2.00A {Oryza sativa} PDB: 3ale_A
Length = 387
Score = 29.0 bits (65), Expect = 1.2
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 72 VDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106
V +L +A+ + + A+ + LV T++ A
Sbjct: 96 VPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAH 130
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 28.8 bits (64), Expect = 1.5
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 66 NEIASK-VDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106
+I V L +A+ + + + S++ LVF TS D
Sbjct: 108 QDICVPGVPALGTEAAVKAIEEWGRPKSEITHLVFCTSCGVD 149
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 27.7 bits (62), Expect = 1.7
Identities = 3/16 (18%), Positives = 8/16 (50%)
Query: 11 GGRTAEDIVNWLLKKT 26
G R + +++ + T
Sbjct: 112 GQRYLSLVDSFVFQNT 127
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 28.4 bits (63), Expect = 2.0
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 66 NEIASK-VDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106
+ + V L +A+ + + + + S + L+F ++T D
Sbjct: 118 QAMLAMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCSTTTPD 159
>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; NMR {Vibrio cholerae}
Length = 94
Score = 26.6 bits (59), Expect = 2.3
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 17 DIVNWLLKKTGPPAKEFTS-VDEIKAF 42
D+ W++ + VD+I A
Sbjct: 54 DLFAWVMGHGRCENLGLAAMVDKIVAH 80
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein,
alpha-helical bundle, complex all- beta folds,
structural protein; 2.10A {Salmonella typhimurium}
Length = 463
Score = 28.3 bits (62), Expect = 2.3
Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 56 DASSELAKTFNEIASKVDDLVFDASSELA---KTFNEIASKVDDL 97
+ L F + D + + N A ++ +L
Sbjct: 71 GKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANL 115
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 27.9 bits (62), Expect = 2.7
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 66 NEIASK-VDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106
++ V L +A+ + K + + SK+ L+ T++ D
Sbjct: 95 QDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVD 136
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide
synthase, transferase; 2.00A {Huperzia serrata} PDB:
3awj_A
Length = 402
Score = 27.6 bits (61), Expect = 3.0
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 66 NEIASK-VDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106
+IA V L +A+ K + + SK+ LVF T++ D
Sbjct: 108 QDIAVLEVPKLAKEAAISAIKQWGQPKSKITHLVFATTSGVD 149
>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS,
chalcone-S synthase superfamily, type I PKS; HET: P6G;
2.90A {Dictyostelium discoideum}
Length = 374
Score = 27.9 bits (62), Expect = 3.0
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 66 NEIASK-VDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADI 107
N K V DL A K + + +V VTST I
Sbjct: 88 NNQFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIII 130
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional
regulation, structure 2 function project, S2F, unknown
function; 1.20A {Escherichia coli} PDB: 1x6j_A
Length = 91
Score = 26.2 bits (58), Expect = 3.1
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 17 DIVNWLLKKTGPPAKEFTS-VDEIKAF 42
D+ NWL+ P E V I+
Sbjct: 56 DLFNWLMNHGKPADAELEMMVRLIQTR 82
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase;
HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2
c.95.1.2 PDB: 1qlv_A
Length = 402
Score = 26.8 bits (59), Expect = 6.8
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 66 NEIASK-VDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106
++ V L +A+ + + SK+ L+F T+ D
Sbjct: 100 QDLVVTGVPMLGKEAAVKAIDEWGLPKSKITHLIFCTTAGVD 141
>2kvp_A Talin-1; VBS, vinculin, helical bundle, cytoplasm, cytoskeleto
membrane, phosphoprotein, structural protein,
acetylation, membrane; NMR {Mus musculus}
Length = 165
Score = 26.2 bits (57), Expect = 7.1
Identities = 11/66 (16%), Positives = 26/66 (39%)
Query: 49 VVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL 108
VV G+ + + + + D + + +T IA V ++V ++T+ + L
Sbjct: 15 VVGGMVDSITQAINQLDEGPMGDPEGSFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEEL 74
Query: 109 AEYSVD 114
+
Sbjct: 75 GPLANQ 80
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase,
hneil1 ortholog, DNA lesion, thymine glycol zincless
finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga
mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Length = 295
Score = 26.5 bits (59), Expect = 7.3
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 19/61 (31%)
Query: 9 RRGGR----TAEDIVNWLLKKTGPPAKEFTSVDE------------IKAFIADSKVVVAG 52
R G +E + L + GP +F D+ I A + D K + +G
Sbjct: 114 RNFGTFKFSNSEKELKRKLNELGP---DFLKNDDIDISKIKKYKQPIVALLMDQKKIGSG 170
Query: 53 L 53
L
Sbjct: 171 L 171
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase,
transferase; 1.75A {Neurospora crassa} PDB: 3eut_A*
3euq_A*
Length = 379
Score = 26.5 bits (58), Expect = 7.7
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 72 VDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106
L +AS + + +++ +V T T++
Sbjct: 81 GVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSA 115
>2z0l_A EA-D, BMRF1, early antigen protein D; alpha/beta protein,
activator, DNA-binding, early protein, nucleus,
transcription; 2.90A {Human herpesvirus 4}
Length = 318
Score = 26.3 bits (57), Expect = 7.8
Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 7/116 (6%)
Query: 78 DASSELAKTFNEIASKVDDLV-----FVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYE 132
A + L+K ++ + + V + LA + I + V
Sbjct: 16 KALAVLSKCYDHAQTHLKGGVLQVNLLSVNYGGPRLAAVANAGTAGLISFEVSPDAVAEW 75
Query: 133 GPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHF 188
+S ++L +++FG ++ L F+ + G F
Sbjct: 76 QNHQSPEEAPAAVSFRNLAYGRTCVL--GKELFGSAVEQASLQFYKRPQGGSRPEF 129
>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural
genomics, PSI, protein structure initiative; NMR
{Neisseria meningitidis} SCOP: a.218.1.1
Length = 82
Score = 24.9 bits (55), Expect = 8.3
Identities = 1/26 (3%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 17 DIVNWLLKKTGPPAKEFTS-VDEIKA 41
+++ + + +++I+
Sbjct: 56 ELLALINGHSETDKGHLIPMLEKIRR 81
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase;
oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A
{Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A*
1j3j_A* 1j3i_A* 3dga_A*
Length = 280
Score = 26.0 bits (57), Expect = 9.1
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 85 KTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYE 132
K NE + + + +K D+ ++NYE
Sbjct: 232 KMLNEQNCIKGEEKNNDMPLKNDDKDTCHMKKLTEFYKNVDKYKINYE 279
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase
(A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3
c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A
1bll_E* 2j9a_A* 2ewb_A*
Length = 484
Score = 26.1 bits (58), Expect = 9.4
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 46 SKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAK 85
+K +V G++ E F + LV E+
Sbjct: 1 TKGLVLGIYSKEKEEDEPQFTSAGENFNKLVSGKLREILN 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.365
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,309,267
Number of extensions: 199502
Number of successful extensions: 477
Number of sequences better than 10.0: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 80
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (24.9 bits)