RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7942
(216 letters)
>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 81.8 bits (202), Expect = 5e-21
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 23/132 (17%)
Query: 30 AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNE 89
A ++ + S+V V G FKD S+ AK F + A +DD+ F
Sbjct: 2 ATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPF------------ 49
Query: 90 IASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS 149
+TS N+D+ ++Y +D D V +FKKFDEGR N+EG + L F+
Sbjct: 50 ---------GITS-NSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEV-TKENLLDFIKHNQ 98
Query: 150 LPLVVEFNHETA 161
LPLV+EF +TA
Sbjct: 99 LPLVIEFTEQTA 110
>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 102
Score = 55.2 bits (133), Expect = 6e-11
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 22/113 (19%)
Query: 34 TSVDEIKAFI-ADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIAS 92
E++AF + ++ + G FK+ SE K F E A +
Sbjct: 5 EGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHP------------------ 46
Query: 93 KVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFL 145
+ F + ++ + + ++ + + ++ F E V + E + F+
Sbjct: 47 ---YIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFV 96
>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 133
Score = 44.1 bits (104), Expect = 1e-06
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 149 SLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK 201
PL+ E ET I L F++ A + + ++ +A+ R
Sbjct: 4 GSPLIGEIGPETYSDYMSAGIP--LAYIFAETAEERKELSDKLKPIAEAQRGV 54
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 33.3 bits (75), Expect = 0.006
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 6 PGERRGGRTAEDIVNWLLKKTGPPA 30
P E GR A+DIVNWL K+TGP A
Sbjct: 96 PKEYTAGREADDIVNWLKKRTGPAA 120
>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 32.2 bits (73), Expect = 0.014
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 155 EFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK 201
E + + E L F E + +AK R
Sbjct: 4 EIDGSVFAQYV--ESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGL 48
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 119
Score = 30.6 bits (68), Expect = 0.051
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 8 ERRGGRTAEDIVNWLLKKTGP 28
+ G RTAE IV +++K++ P
Sbjct: 99 DYEGPRTAEAIVQFMIKQSQP 119
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 124
Score = 29.0 bits (64), Expect = 0.22
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 8 ERRGGRTAEDIVNWLLKKTGPP 29
E G +A+ +V +LL P
Sbjct: 103 EYDGEFSADTLVEFLLDVLEDP 124
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 27.7 bits (61), Expect = 0.51
Identities = 2/17 (11%), Positives = 7/17 (41%)
Query: 11 GGRTAEDIVNWLLKKTG 27
T +++ ++ T
Sbjct: 102 VDVTLDNLKAFVSANTP 118
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 27.9 bits (61), Expect = 0.54
Identities = 4/36 (11%), Positives = 15/36 (41%)
Query: 10 RGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIAD 45
+G R+ + + +++ + +E + A+
Sbjct: 104 QGSRSLDSLFDFIKENGHFDVDGKALYEEAQEKAAE 139
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 232
Score = 27.8 bits (60), Expect = 0.93
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 1 MPSCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSE 60
P L +R+ R E +V SV + VV + +
Sbjct: 162 RPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVP-----VVT---VVRAMLNNVVRP 213
Query: 61 LAKTFNEIASK 71
K + +K
Sbjct: 214 RDKQMELLENK 224
>d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 311
Score = 27.9 bits (60), Expect = 0.98
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 47 KVVVAGLFKDASSELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLVFVTSTNA 105
KV AG + + F E V+ S+ + E+ K D + T
Sbjct: 5 KVFHAGSLTEPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADYTLI 64
Query: 106 DILAE 110
+
Sbjct: 65 QKMMY 69
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 26.0 bits (57), Expect = 2.4
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 54 FKDASSELAKTFNEIASKVDDLVFDASS---ELAKTFNEIASKVDDLV 98
F D + + +T IA V ++V +++ EL N++ S L
Sbjct: 13 FVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLA 60
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria
meningitidis, mc58 [TaxId: 487]}
Length = 82
Score = 25.1 bits (55), Expect = 2.6
Identities = 1/27 (3%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 16 EDIVNWLLKKTGPPAKEFTS-VDEIKA 41
++++ + + +++I+
Sbjct: 55 QELLALINGHSETDKGHLIPMLEKIRR 81
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 25.4 bits (55), Expect = 4.1
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 6 PGERRGGRTAEDIVNWLLKKT 26
P G I WL +
Sbjct: 97 PVPYSGAVKVGAIQRWLKGQG 117
>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 252
Score = 25.8 bits (56), Expect = 4.9
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 47 KVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD 106
V EL F E ++ + +EL + +VD LV +N
Sbjct: 26 TVACHDESFKQKDELEA-FAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLV----SNDI 80
Query: 107 ILAEY-SVDDDTVAIFKK 123
E+ +D V ++
Sbjct: 81 FAPEFQPIDKYAVEDYRG 98
>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 259
Score = 25.0 bits (54), Expect = 6.7
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 3/87 (3%)
Query: 40 KAFIAD-SKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSE--LAKTFNEIASKVDD 96
+ F + + + +E + + +V V DAS K ++S
Sbjct: 26 EEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG 85
Query: 97 LVFVTSTNADILAEYSVDDDTVAIFKK 123
+ + N + D T F
Sbjct: 86 KLDILINNLGAIRSKPTLDYTAEDFSF 112
>d1wj9a2 d.58.53.1 (A:88-211) Hypothetical protein TTHB192
{Thermus thermophilus [TaxId: 274]}
Length = 124
Score = 24.5 bits (53), Expect = 7.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 6 PGERRGGRTAEDIVNWLLKK 25
G+R +T + V WL ++
Sbjct: 23 TGKRVALKTPAEKVAWLERR 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.365
Gapped
Lambda K H
0.267 0.0375 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 777,266
Number of extensions: 35009
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 21
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.4 bits)