BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7943
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 125 bits (315), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 73/101 (72%)
Query: 19 DDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDI 78
D EED VLVL + NF ++ H ++LVEFYAPWCGHCK L PEY+KAA +L +G +I
Sbjct: 1 DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 79 KLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTS 119
+LAKVDAT+ + LA+QYGVRGYPT+KFF+ E T+
Sbjct: 61 RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTA 101
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 61/88 (69%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
L LT+DNF + D ILVEFYAPWCGHCK+L PEY KAA +L+ I LAKVDAT
Sbjct: 9 TLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 68
Query: 87 QHTALAEQYGVRGYPTLKFFKKRSIIEY 114
+ T LA+++ V GYPTLK F+K +Y
Sbjct: 69 EQTDLAKRFDVSGYPTLKIFRKGRPFDY 96
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 61/88 (69%)
Query: 28 LVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ 87
LVLT++NF + D ILVEFYAPWCGHCK+L PEY KAA +L+ I LAKVDAT
Sbjct: 133 LVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA 192
Query: 88 HTALAEQYGVRGYPTLKFFKKRSIIEYG 115
T LA+++ V GYPTLK F+K +Y
Sbjct: 193 ETDLAKRFDVSGYPTLKIFRKGRPYDYN 220
Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 20 DVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIK 79
+V EE+GVLVL NF + + D +L+EFYAPWCGHCKQ PEY K A L I
Sbjct: 10 EVKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIP 69
Query: 80 LAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGE-------VTSVEYCYQRNWHKRA 132
+AK+DAT + LA ++ V GYPT+K KK ++Y V V Q +W
Sbjct: 70 VAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQPDWTPPP 129
Query: 133 VTSVIIRK 140
++++ K
Sbjct: 130 EVTLVLTK 137
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%)
Query: 20 DVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIK 79
+V EE+GV VL NF + + D +L+EFYAPWCGHCKQ PEY K A L + I
Sbjct: 12 EVKEENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIA 71
Query: 80 LAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114
+AK+DAT + LA ++ V GYPT+K KK ++Y
Sbjct: 72 VAKIDATSASMLASKFDVSGYPTIKILKKGQAVDY 106
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 54/84 (64%), Gaps = 6/84 (7%)
Query: 27 VLVLTQDNFQSSIEKHDH---ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
VL LT DNF+S I +LVEF+APWCGHCK+L PEY AA +L + LAKV
Sbjct: 3 VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLK---GIVPLAKV 59
Query: 84 DATQHTALAEQYGVRGYPTLKFFK 107
D T +T +YGV GYPTLK F+
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFR 83
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 64/92 (69%), Gaps = 5/92 (5%)
Query: 27 VLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLA--TDGHDIKLAKV 83
V+ LT D+F ++ + D +VEFYAPWCGHCK L PE++ AA ++ T G +KLA V
Sbjct: 9 VIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGK-VKLAAV 67
Query: 84 DATQHTALAEQYGVRGYPTLKFFKK-RSIIEY 114
DAT + LA +YG+RG+PT+K F+K S ++Y
Sbjct: 68 DATVNQVLASRYGIRGFPTIKIFQKGESPVDY 99
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 87.4 bits (215), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 23 EEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAK 82
E+ V+ L D+F I+ HD +L EF+APWCGHCK + PEY KAA L +I LA+
Sbjct: 12 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQ 69
Query: 83 VDATQHTALAEQYGVRGYPTLKFFKKRSI 111
+D T++ L ++ + G+P+LK FK +
Sbjct: 70 IDCTENQDLCMEHNIPGFPSLKIFKNSDV 98
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 35 FQSSIEKHDHI--------LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
FQ + HD I LV +YAPWCGHCK+L P Y + A A D+ +AK+D T
Sbjct: 361 FQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT 420
Query: 87 QHTALAEQYGVRGYPTLKFF----KKRSIIEYG 115
++ + GYPT+ + K S++ G
Sbjct: 421 END--VRGVVIEGYPTIVLYPGGKKSESVVYQG 451
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 22 TEEDGVLVLTQDNFQSSIEKHDHI-LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
+ D V+ LT NF + + D + LVEFYAPWCGHC++L PE+ KAA L +K+
Sbjct: 14 SSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK---DVVKV 70
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFF 106
V+A +H +L QYGV+G+PT+K F
Sbjct: 71 GAVNADKHQSLGGQYGVQGFPTIKIF 96
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 84.3 bits (207), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 53/84 (63%), Gaps = 6/84 (7%)
Query: 27 VLVLTQDNFQSSIEKHDH---ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
VL LT DNF+S I +LVEF+APWCGH K+L PEY AA +L + LAKV
Sbjct: 3 VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG---IVPLAKV 59
Query: 84 DATQHTALAEQYGVRGYPTLKFFK 107
D T +T +YGV GYPTLK F+
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFR 83
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 25 DG-VLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAK 82
DG V V+ +NF + + +L+EFYAPWCGHCK L P+Y + +L+ D +I +AK
Sbjct: 351 DGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDP-NIVIAK 409
Query: 83 VDATQHTALAEQYGVRGYPTLKF 105
+DAT + + Y VRG+PT+ F
Sbjct: 410 MDATAND-VPSPYEVRGFPTIYF 431
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
VL LT++NF +I + ++FYAPWCGHCK L P + + + + +K+A+VD T
Sbjct: 9 VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 67
Query: 87 QHTALAEQYGVRGYPTLKFFK 107
+ +Y VRGYPTL F+
Sbjct: 68 AERNICSKYSVRGYPTLLLFR 88
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
VL LT++NF +I + ++FYAPWCGHCK L P + + + + +K+A+VD T
Sbjct: 2 VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 60
Query: 87 QHTALAEQYGVRGYPTLKFFK 107
+ +Y VRGYPTL F+
Sbjct: 61 AERNICSKYSVRGYPTLLLFR 81
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
VL LT++NF +I + ++FYAPWCGHCK L P + + + + +K+A+VD T
Sbjct: 7 VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 65
Query: 87 QHTALAEQYGVRGYPTLKFFK 107
+ +Y VRGYPTL F+
Sbjct: 66 AERNICSKYSVRGYPTLLLFR 86
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 25 DG-VLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAK 82
DG V V+ +NF + + +L+EFYAPWCGHCK L P+Y + +L+ D +I +AK
Sbjct: 26 DGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKD-PNIVIAK 84
Query: 83 VDATQHTALAEQYGVRGYPTLKF 105
+DAT + + Y VRG+PT+ F
Sbjct: 85 MDATAND-VPSPYEVRGFPTIYF 106
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 27 VLVLTQDNFQS-SIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
V VL NF+ + ++ ++ VEFYAPWCGHCKQL P + K + D +I +AK+D+
Sbjct: 9 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLG-ETYKDHENIVIAKMDS 67
Query: 86 TQHTALAEQYGVRGYPTLKFFK---KRSIIEY-GEVT 118
T + E V +PTLKFF R++I+Y GE T
Sbjct: 68 TANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERT 102
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 27 VLVLTQDNFQS-SIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
V VL NF+ + ++ ++ VEFYAPWCGHCKQL P + K + D +I +AK+D+
Sbjct: 251 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLG-ETYKDHENIVIAKMDS 309
Query: 86 TQHTALAEQYGVRGYPTLKFFK---KRSIIEY-GEVT 118
T + E V +PTLKFF R++I+Y GE T
Sbjct: 310 TANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERT 344
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
D ++ LT D+F + + K D ILV+F+A WCGHCK + P + A + + +AK+
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQ---GKLTVAKL 58
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSI 111
+ Q+ A +YG+RG PTL FK +
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
+L+EFYAPWCGHCKQL P Y+ + D+ +AK+DAT + +QY V G+PT+
Sbjct: 28 VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQ-KDLVIAKMDATANDITNDQYKVEGFPTIY 86
Query: 105 F 105
F
Sbjct: 87 F 87
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 30 LTQDNFQSSIEKHDHI-LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV--DAT 86
LT +F +I ++ LVEFYAPWCGHCK+L + KAA +L DG +++A V D
Sbjct: 22 LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL--DGV-VQVAAVNCDLN 78
Query: 87 QHTALAEQYGVRGYPTLKFFKKRSI 111
++ AL +Y V G+PTL F+ I
Sbjct: 79 KNKALCAKYDVNGFPTLMVFRPPKI 103
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F++ + K D ILV+F+A WCG CK + P + A D + KL A
Sbjct: 2 DKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT+D+F + + K D ILV+F+A WCG CK + P + A D + KL A
Sbjct: 2 DKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A + + +AK+
Sbjct: 12 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ---GKLTVAKL 68
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSI 111
+ Q+ A +YG+RG PTL FK +
Sbjct: 69 NIDQNPGTAPKYGIRGIPTLLLFKNGEV 96
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A D + KL A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA-----DDYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A + + +AK+
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ---GKLTVAKL 58
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSI 111
+ Q+ A +YG+RG PTL FK +
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGDV 86
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A + + +AK+
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQ---GKLTVAKL 58
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSI 111
+ Q+ A +YG+RG PTL FK +
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WCG CK + P L+ D + KL A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP-----ILEEIADEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A D + KL A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A D + KL A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A D + KL A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A + + +AK+
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ---GKLTVAKL 59
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSI 111
+ Q+ A +YG+RG PTL FK +
Sbjct: 60 NIDQNPGTAPKYGIRGTPTLLLFKNGEV 87
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A + + +AK+
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ---GKLTVAKL 58
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSI 111
+ Q+ A +YG+RG PTL FK +
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A D + KL A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
D ++ LT D+F + + K D ILV+F+A WCG CK + P A + + +AK+
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQ---GKLTVAKL 58
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSI 111
+ Q+ A +YG+RG PTL FK +
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
+LV+F+APWCG C+Q+ P++ AA LA ++LAK+D H A+A ++ ++G P
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAG---QVRLAKIDTQAHPAVAGRHRIQGIPAFI 123
Query: 105 FFKK 108
F K
Sbjct: 124 LFHK 127
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 30 LTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--AKVDAT 86
LT D+F + + K D ILV+F+A WCG CK + P + A D + KL AK++
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA-----DEYQGKLTVAKLNID 61
Query: 87 QHTALAEQYGVRGYPTLKFFKKRSI 111
Q+ A +YG+RG PTL FK +
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
D ++ +T D+F + + K D ILV+F+A WCG CK + P + A + + +AK+
Sbjct: 2 DKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ---GKLTVAKL 58
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSI 111
+ Q+ A +YG+RG PTL FK +
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WCG C+ + P + A D + KL A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 24 EDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSK-AALQLATDGHD-IKL 80
E V V+ N+ + + +L+EFYAPWCGHCK L P+Y + AL ++ D + +
Sbjct: 6 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVI 65
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFF 106
AKVDAT + E ++G+PT+K +
Sbjct: 66 AKVDATANDVPDE---IQGFPTIKLY 88
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT ++F + + K D ILV+F+A WCG CK + P + A D + KL A
Sbjct: 2 DKIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A D + KL A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+R PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRSIPTLLLFKNGEV 86
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 22 TEEDGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
+ D ++ LT D+F + + K D ILV+F+A WCG K + P + A + + +
Sbjct: 19 SHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQ---GKLTV 75
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
AK++ Q+ A +YG+RG PTL FK +
Sbjct: 76 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 106
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WCG K + P + A D + KL A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATD-GHDIKLAKVDATQHTA 90
+ F + LV+F+APWCG C+ + P +LA D +K+ KV+ +H
Sbjct: 40 EKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILE----ELARDHAGRLKVVKVNVDEHPG 95
Query: 91 LAEQYGVRGYPTLKFFKKRSII 112
LA +YGVR PTL F++ + +
Sbjct: 96 LAARYGVRSVPTLVLFRRGAPV 117
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WC CK + P + A D + KL A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGH-CKQLVPEYSKAALQLATDGHDIKL-- 80
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A D + KL
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIA-----DEYQGKLTV 56
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
AK++ Q+ A +YG+RG PTL FK +
Sbjct: 57 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 87
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WCG CK + + A D + KL A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 30 LTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
+T D+F+ + K+D +LV+F+A WCG C+Q+ P A + G I++ K++ ++
Sbjct: 10 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEY---GDKIEIVKLNIDEN 66
Query: 89 TALAEQYGVRGYPTLKFFKKRSI 111
A +YGV PTL ++ +
Sbjct: 67 PGTAAKYGVMSIPTLNVYQGGEV 89
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 28 LVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVP---EYSKAALQLATDGHDIKLAKVD 84
+ LT NFQ +I+ +LV+F+A WCG C+ + P E+++A + +AK++
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEA------HADKVTVAKLN 56
Query: 85 ATQHTALAEQYGVRGYPTLKFFK 107
++ Q+G+ PTL FK
Sbjct: 57 VDENPETTSQFGIMSIPTLILFK 79
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 28 LVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVP---EYSKAALQLATDGHDIKLAKVD 84
+ LT NFQ +I+ +LV+F+A WCG C+ + P E+++A + +AK++
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEA------HADKVTVAKLN 56
Query: 85 ATQHTALAEQYGVRGYPTLKFFK 107
++ Q+G+ PTL FK
Sbjct: 57 VDENPETTSQFGIMSIPTLILFK 79
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 28 LVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVP---EYSKAALQLATDGHDIKLAKVD 84
+ LT NFQ +I+ +LV+F+A WCG C+ + P E+++A + +AK++
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEA------HADKVTVAKLN 56
Query: 85 ATQHTALAEQYGVRGYPTLKFFK 107
++ Q+G+ PTL FK
Sbjct: 57 VDENPETTSQFGIMSIPTLILFK 79
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 28 LVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVP---EYSKAALQLATDGHDIKLAKVD 84
+ LT NFQ +I+ +LV+F+A WCG C+ + P E+++A + +AK++
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEA------HADKVTVAKLN 56
Query: 85 ATQHTALAEQYGVRGYPTLKFFK 107
++ Q+G+ PTL FK
Sbjct: 57 VDENPETTSQFGIMSIPTLILFK 79
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-HTALAEQYGVRGYPTL 103
++++ + WCG CK + P+Y K LA + D+ K+D Q + LA++ G+R PT
Sbjct: 28 VVLDMFTQWCGPCKAMAPKYEK----LAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF 83
Query: 104 KFFKKRSIIEYGEVTSVEY 122
K K+ S++ GEVT +Y
Sbjct: 84 KILKENSVV--GEVTGAKY 100
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-HTALAEQYGVRGYPTL 103
++++ + WCG CK + P+Y K LA + D+ K+D Q + LA++ G+R PT
Sbjct: 40 VVLDMFTQWCGPCKAMAPKYEK----LAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF 95
Query: 104 KFFKKRSIIEYGEVTSVEY 122
K K+ S++ GEVT +Y
Sbjct: 96 KILKENSVV--GEVTGAKY 112
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A D + KL A
Sbjct: 2 DKIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +Y RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYIERGIPTLLLFKNGEV 86
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL--A 81
D ++ LT D+F + + K D ILV+F+A WC K + P + A D + KL A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIA-----DEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
K++ Q+ A +YG+RG PTL FK +
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 28 LVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ 87
++ + D F+ ++++F+A WCG CK + P + K + A G + KVD +
Sbjct: 19 VISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPA--GDKVGFYKVDVDE 76
Query: 88 HTALAEQYGVRGYPTLKFFKKRSIIE 113
+ +A++ G+R PT FFK I+
Sbjct: 77 QSQIAQEVGIRAMPTFVFFKNGQKID 102
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 27 VLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
V+ +T +NF+ + K D +LV+F+APWCG C+ + P + A + + VD
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK-VKVVKVNVDE 61
Query: 86 TQHTALAEQYGVRGYPTLKFFKKRSIIE 113
+T A QYG+R PTL FK +++
Sbjct: 62 NPNT--AAQYGIRSIPTLLLFKNGQVVD 87
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
+L +F+APWCG CK + P + ++ G +K+ K+D ++ A +YGV PTL
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEM---GDKLKIVKIDVDENQETAGKYGVMSIPTLL 76
Query: 105 FFKKRSIIE 113
K ++E
Sbjct: 77 VLKDGEVVE 85
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 30 LTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT 89
L NF I K+ ++V+F+A WC C L P +LA D + K++ +
Sbjct: 11 LNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIE----ELANDYPQVAFGKLNTEESQ 66
Query: 90 ALAEQYGVRGYPTLKFFKKRSIIE 113
+A +YG+ PT+ FFK +++
Sbjct: 67 DIAMRYGIMSLPTIMFFKNGELVD 90
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 30 LTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
LT F + + H +V+FYAPWCG C+ PE+ A + ++ KVD +
Sbjct: 8 LTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK---GKVRAGKVDCQAY 64
Query: 89 TALAEQYGVRGYPTLKFFK----KRSIIE 113
++ G++ YP++K ++ K+SI E
Sbjct: 65 PQTCQKAGIKAYPSVKLYQYERAKKSIWE 93
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 39 IEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVR 98
+E ++V+F+APWCG CK + P + A + + I + K++ + +A QY +R
Sbjct: 15 LESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS---GKIAVYKLNTDEAPGIATQYNIR 71
Query: 99 GYPTLKFFK----KRSII 112
PT+ FFK K SII
Sbjct: 72 SIPTVLFFKNGERKESII 89
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 39 IEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVR 98
+E ++V+F+APWCG CK + P + A + + I + K++ + +A QY +R
Sbjct: 14 LESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS---GKIAVYKLNTDEAPGIATQYNIR 70
Query: 99 GYPTLKFFK----KRSII 112
PT+ FFK K SII
Sbjct: 71 SIPTVLFFKNGERKESII 88
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
V L NF +S + LV+F+APW + L+PE KA+ L +K+ +D T
Sbjct: 442 VTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ---LKVGTLDCT 496
Query: 87 QHTALAEQYGVRGYPTLKFFKKRSIIEY 114
H L Y ++ YPT F + SI EY
Sbjct: 497 IHEGLCNMYNIQAYPTTVVFNQSSIHEY 524
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 27 VLVLTQDNFQSSIE--KHDHI-LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
V+ LT F ++ KHD + +V+FY+PW + L+PE+ + A L I + V
Sbjct: 545 VVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG---LINVGSV 601
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114
D Q+ + Q V+ YP ++F+ ++S Y
Sbjct: 602 DCGQYHSFCTQENVQRYPEIRFYPQKSSKAY 632
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 30 LTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
LT F + + H +V+FYAPW G + PE+ A + ++ KVD +
Sbjct: 662 LTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG---KVRAGKVDCQAY 718
Query: 89 TALAEQYGVRGYPTLKFFK----KRSIIE 113
++ G++ YP++K ++ K+SI E
Sbjct: 719 PQTCQKAGIKAYPSVKLYQYERAKKSIWE 747
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
++ L + F +++ + V FY+P H L P + + A ++ DG +++ V+
Sbjct: 118 IITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEV--DGL-LRIGAVNCG 174
Query: 87 QHTALAEQYGVRGYPTLKFFK 107
L GV YP+L F+
Sbjct: 175 DDRMLCRMKGVNSYPSLFIFR 195
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
V+ L NF S + H+ +V+F+A WC C L P +LA D + K+++
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIE----ELAEDYPQVGFGKLNSD 56
Query: 87 QHTALAEQYGVRGYPTLKFFK 107
++ +A +YGV PT+ FFK
Sbjct: 57 ENPDIAARYGVMSLPTVIFFK 77
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGH--------------CKQLVPEYSKAAL 69
D ++ LT D+F + + K D ILV+F+A WCG CK + P + A
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIAD 62
Query: 70 QLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSI 111
+ + +AK++ Q+ A +YG+RG PTL FK +
Sbjct: 63 EYQ---GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 101
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHD--IKLAKVD 84
V V+T +N++ +E ++EFYAPWC C+ L PE+ A G D + +AKVD
Sbjct: 9 VRVITDENWRELLEGD--WMIEFYAPWCPACQNLQPEWE----SFAEWGEDLEVNIAKVD 62
Query: 85 ATQHTALAEQYGVRGYPTL 103
T+ L+ ++ + PT+
Sbjct: 63 VTEQPGLSGRFIINALPTI 81
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 30 LTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
+ D F++ + E +LV+F+APWCG C+ + P + A + +K K++ +
Sbjct: 6 VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK---DKLKCVKLNTDES 62
Query: 89 TALAEQYGVRGYPTLKFFK 107
+A +YG+R PT+ FK
Sbjct: 63 PNVASEYGIRSIPTIMVFK 81
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 22 TEEDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
+E+ + +T +F + + + +LV+F+A WCG CK + P + A + AT D+ +
Sbjct: 9 SEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT---DLTV 65
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFFK 107
AK+D + A + V PTL FK
Sbjct: 66 AKLDVDTNPETARNFQVVSIPTLILFK 92
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 22 TEEDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
+E+ + +T +F + + + +LV+F+A WCG CK + P + A + AT D+ +
Sbjct: 4 SEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT---DLTV 60
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFFK 107
AK+D + A + V PTL FK
Sbjct: 61 AKLDVDTNPETARNFQVVSIPTLILFK 87
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-HTALAEQYGVRGYPTL 103
++++ + WCG K + P+Y K LA + D+ K+D Q + LA++ G+R PT
Sbjct: 27 VVLDMFTQWCGPSKAMAPKYEK----LAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF 82
Query: 104 KFFKKRSIIEYGEVTSVEY 122
K K+ S++ GEVT +Y
Sbjct: 83 KILKENSVV--GEVTGAKY 99
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 28 LVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ 87
+V +Q F S I +++ ++V+F+A WCG CK++ P Y + + + KVD +
Sbjct: 12 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT----KMVFIKVDVDE 67
Query: 88 HTALAEQYGVRGYPTLKFFKKRSIIE 113
+ + E+ + PT K +K S ++
Sbjct: 68 VSEVTEKENITSMPTFKVYKNGSSVD 93
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 26 GVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVD 84
GV+ +T F+S + K + +LV F+A WCG C+ + P + AA T +K+ K++
Sbjct: 8 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAA---NTYSDRLKVVKLE 64
Query: 85 ATQHTALAEQYGVRGYPTLKFFKKRSIIEYGE 116
+ ++Y V G P L+ K I++ E
Sbjct: 65 IDPNPTTVKKYKVEGVPALRLVKGEQILDSTE 96
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLA---TDGHDIKLAKV 83
+ L +N + D LV FYA WC + L P + +A+ + + + + A+V
Sbjct: 7 ITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARV 66
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRN 127
D QH+ +A++Y + YPTLK F+ G EY QR+
Sbjct: 67 DCDQHSDIAQRYRISKYPTLKLFRN------GXXXKREYRGQRS 104
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
+L +F+APWCG K + P + ++ G +K+ K+D ++ A +YGV PTL
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEM---GDKLKIVKIDVDENQETAGKYGVMSIPTLL 76
Query: 105 FFKKRSIIE 113
K ++E
Sbjct: 77 VLKDGEVVE 85
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
I+V+F+A WCG C+ + P+ LA + +++ AKVD Q+ A +Y V PT
Sbjct: 22 IVVDFFAQWCGPCRNIAPKVE----ALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFV 77
Query: 105 FFK 107
F K
Sbjct: 78 FIK 80
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
+L +F+APWCG K + P + ++ G +K+ K+D ++ A +YGV PTL
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEM---GDKLKIVKIDVDENQETAGKYGVMSIPTLL 76
Query: 105 FFKKRSIIE 113
K ++E
Sbjct: 77 VLKDGEVVE 85
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 39 IEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVR 98
+E ++V+F+APWCG K + P + A + + I + K++ + +A QY +R
Sbjct: 15 LESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYS---GKIAVYKLNTDEAPGIATQYNIR 71
Query: 99 GYPTLKFFK----KRSII 112
PT+ FFK K SII
Sbjct: 72 SIPTVLFFKNGERKESII 89
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 25 DG-VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
DG V+ T + ++ +++F+APWCG C+ P +++ A + A ++ KV
Sbjct: 37 DGEVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERA---GKVRFVKV 93
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSIIE 113
+ AL+ ++ +R PT+ ++ I+
Sbjct: 94 NTEAEPALSTRFRIRSIPTIXLYRNGKXID 123
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 22 TEEDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
+ D + +L D + ++ VEF+A WCGHC P + A + + L
Sbjct: 9 SPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYL 68
Query: 81 AKVDATQHT--ALAEQYGVRGYPTLKFFKKRSIIEYGEVTSV 120
A +D + T A+ + + G+PT++FF + G V V
Sbjct: 69 AALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPV 110
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 22 TEEDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
+E+ + +T +F + + + +LV+F+A WCG K + P + A + AT D+ +
Sbjct: 6 SEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERAT---DLTV 62
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFFK 107
AK+D + A + V PTL FK
Sbjct: 63 AKLDVDTNPETARNFQVVSIPTLILFK 89
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F+A WCG CK L P K +A + +AKVD HT LA +Y V PT+
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEK---MVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 90
Query: 105 FFKKRSIIE 113
K +++
Sbjct: 91 AMKNGDVVD 99
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 30 LTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT 89
+T NF ++ +H +LV+F+A WC C+ + P + A + +G + +AK+D ++
Sbjct: 7 VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGK-LLVAKLDVDENP 63
Query: 90 ALAEQYGVRGYPTLKFFKKRSIIE 113
A +Y V PT+ FK +E
Sbjct: 64 KTAXRYRVXSIPTVILFKDGQPVE 87
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 30 LTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT 89
+T NF ++ +H +LV+F+A WC C+ + P + A + +G + +AK+D ++
Sbjct: 6 VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGK-LLVAKLDVDENP 62
Query: 90 ALAEQYGVRGYPTLKFFKKRSIIE 113
A +Y V PT+ FK +E
Sbjct: 63 KTAXRYRVXSIPTVILFKDGQPVE 86
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 35 FQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQ 94
F++ I+++D ++++FYA WCG CK + P +K L D++ K D + +A++
Sbjct: 23 FRNLIKQNDKLVIDFYATWCGPCKMMQPHLTK----LIQAYPDVRFVKCDVDESPDIAKE 78
Query: 95 YGVRGYPTLKFFKKRSII 112
V PT K +I
Sbjct: 79 CEVTAMPTFVLGKDGQLI 96
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 23 EEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAK 82
+ED LVLT++NF I + +LV+ +A WC C P Y K A + G + +
Sbjct: 2 KEDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK--GKAV-FGR 58
Query: 83 VDATQHTALAEQYGVRGYPTLKFFKKRSIIE 113
++ ++ +A++Y V PT F +++
Sbjct: 59 LNVDENQKIADKYSVLNIPTTLIFVNGQLVD 89
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 45 ILVEFYAPWCGHCK---QLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYP 101
+LV+F+A WCG C+ Q++P ++A D+ KVD ++ A+ YGV P
Sbjct: 26 VLVDFFATWCGPCQRLGQILPSIAEA-------NKDVTFIKVDVDKNGNAADAYGVSSIP 78
Query: 102 TLKFFKKRS 110
L F KK
Sbjct: 79 ALFFVKKEG 87
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTAL 91
+++F+ I+V+F A WC CK + P ++ +LA ++ KVD + A+
Sbjct: 16 KEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFA----ELAKKFPNVTFLKVDVDELKAV 71
Query: 92 AEQYGVRGYPTLKFFKKRSIIE 113
AE++ V PT F K +++
Sbjct: 72 AEEWNVEAMPTFIFLKDGKLVD 93
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 30 LTQDNFQSSIEKH-DHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
L+ +FQ + +H D I++ F WC CK++ P + + A Q+ DI+ A +DA
Sbjct: 4 LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQME---GDIRFAYMDAEDA 60
Query: 89 TALAEQYGVRGYPTLKFF 106
+ +R P+L F
Sbjct: 61 EKTMAELNIRTLPSLALF 78
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTAL 91
+ Q + E ++V+F A WCG C+ + P ++ A +L ++ KVD + ++
Sbjct: 28 NEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDELKSV 83
Query: 92 AEQYGVRGYPTLKFFKKRSIIE 113
A + ++ PT F K+ I++
Sbjct: 84 ASDWAIQAMPTFMFLKEGKILD 105
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG CK + P + L+ ++ +VD +A +YG+RG PTL
Sbjct: 23 VVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLL 78
Query: 105 FFKKRSI 111
FK +
Sbjct: 79 LFKNGEV 85
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++++F+A WCG CK + P+ + + Q A ++ + KVD + +A +Y + PT
Sbjct: 23 VVLDFFATWCGPCKMISPKLVELSTQFA---DNVVVLKVDVDECEDIAMEYNISSMPTFV 79
Query: 105 FFKKRSIIE 113
F K +E
Sbjct: 80 FLKNGVKVE 88
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++++F+A WCG CK + P+ + + Q A ++ + KVD + +A +Y + PT
Sbjct: 28 VVLDFFATWCGPCKMISPKLVELSTQFA---DNVVVLKVDVDECEDIAMEYNISSMPTFV 84
Query: 105 FFKKRSIIE 113
F K +E
Sbjct: 85 FLKNGVKVE 93
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 47 VEFYAPWCGHCKQLVPEYSKAALQLATDGHD----IKLAKVDATQHT--ALAEQYGVRGY 100
VEF+A WCGH P + +LA D D + LA +D + T A+ ++ + G+
Sbjct: 35 VEFFASWCGHAIAFAPTWK----ELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF 90
Query: 101 PTLKFFK 107
PT++FF+
Sbjct: 91 PTVRFFQ 97
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 28 LVLTQDNF-QSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
L ++ +F Q ++ +LV+F+A WCG CK + P + + A + +AKV+
Sbjct: 5 LAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA---GKVTVAKVNID 61
Query: 87 QHTALAEQYGVRGYPTLKFFKKRSIIE 113
+ Y VR PTL + +I+
Sbjct: 62 DNPETPNAYQVRSIPTLMLVRDGKVID 88
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 34 NFQSSIEKHDH-----ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
NF+ + E+ + +V+FYA WCG CK + P + A + DG I + KVD +
Sbjct: 25 NFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEY--DGQ-IVIYKVDTEKE 81
Query: 89 TALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRAVTSVIIRK 140
LA +G+R P++ F G+ + + K+A+ +++K
Sbjct: 82 QELAGAFGIRSIPSILFIPME-----GKPEMAQGAMPKASFKKAIDEFLLKK 128
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 30 LTQD-NFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
L QD + +S +E+H + ++V+F+A WCG CK + P + + ++ +D KVD
Sbjct: 18 LKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKE-----LSEKYDAIFVKVDVD 72
Query: 87 QHTALAEQYGVRGYPTL 103
+ A +Y + PT
Sbjct: 73 KLEETARKYNISAMPTF 89
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 30 LTQD-NFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
L QD + +S +E+H + ++V+F+A WCG CK + P + + ++ +D KVD
Sbjct: 9 LKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKE-----LSEKYDAIFVKVDVD 63
Query: 87 QHTALAEQYGVRGYPTL 103
+ A +Y + PT
Sbjct: 64 KLEETARKYNISAMPTF 80
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 31 TQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA 90
T F S+I + ++V+FYA WCG CK + P K + Q K+D +
Sbjct: 7 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY----PQADFYKLDVDELGD 62
Query: 91 LAEQYGVRGYPTLKFFK 107
+A++ V PTL FK
Sbjct: 63 VAQKNEVSAMPTLLLFK 79
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 31 TQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA 90
T F S+I + ++V+FYA WCG CK + P K + Q K+D +
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY----PQADFYKLDVDELGD 68
Query: 91 LAEQYGVRGYPTLKFFK 107
+A++ V PTL FK
Sbjct: 69 VAQKNEVSAMPTLLLFK 85
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V FY+P C +CK P + + A + G +++ + AE+YGV+G PT K
Sbjct: 27 VVVXFYSPACPYCKAXEPYFEEYAKEY---GSSAVFGRINIATNPWTAEKYGVQGTPTFK 83
Query: 105 FF 106
FF
Sbjct: 84 FF 85
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 31 TQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT 89
+ + S++ D ++V+F+A WCG CK + P K A Q + D K+D + +
Sbjct: 7 SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS----DAAFYKLDVDEVS 62
Query: 90 ALAEQYGVRGYPTLKFFK 107
+A++ V PTL F+K
Sbjct: 63 DVAQKAEVSSMPTLIFYK 80
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++++F A WCG C+ + P ++ LA + KVD + +AEQ+ V PT
Sbjct: 37 VVIDFTASWCGPCRIMAPVFA----DLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFL 92
Query: 105 FFKKRSI 111
F K+ +
Sbjct: 93 FMKEGDV 99
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 31 TQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT 89
+ + S++ D ++V+F+A WCG CK + P K A Q + D K+D + +
Sbjct: 14 SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS----DAAFYKLDVDEVS 69
Query: 90 ALAEQYGVRGYPTLKFFK 107
+A++ V PTL F+K
Sbjct: 70 DVAQKAEVSSMPTLIFYK 87
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
++ +T +F S +E LV+F+A WCG CK + P + A +KL D
Sbjct: 4 AIVKVTDADFDSKVESGVQ-LVDFWATWCGSCKMIAPVLEELAADYEGKADILKL---DV 59
Query: 86 TQHTALAEQYGVRGYPTLKFFK 107
++ + A +Y V PTL FK
Sbjct: 60 DENPSTAAKYEVMSIPTLIVFK 81
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
++ L + F +++ + V FY+P C HC L P + + A ++ DG +++ V+
Sbjct: 99 IITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEV--DGL-LRIGAVNCG 155
Query: 87 QHTALAEQYGVRGYPTLKFFK 107
L GV YP+L F+
Sbjct: 156 DDRMLCRMKGVNSYPSLFIFR 176
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
++ +T +F S +E LV+F+A WCG CK + P + A +KL D
Sbjct: 5 AIVKVTDADFDSKVESGVQ-LVDFWATWCGTCKMIAPVLEELAADYEGKADILKL---DV 60
Query: 86 TQHTALAEQYGVRGYPTLKFFK 107
++ + A +Y V PTL FK
Sbjct: 61 DENPSTAAKYEVMSIPTLIVFK 82
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
++ +T +F S +E LV+F+A WCG CK + P + A +KL D
Sbjct: 5 AIVKVTDADFDSKVESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKL---DV 60
Query: 86 TQHTALAEQYGVRGYPTLKFFK 107
++ + A +Y V PTL FK
Sbjct: 61 DENPSTAAKYEVMSIPTLIVFK 82
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105
+V+FYA WCG CK + P + + + A I + KV+ + LA +G++G PT+ F
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYA---GKIYIYKVNVDKEPELARDFGIQGIPTIWF 111
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++++FYA WCG CK + P+ +L+ D+ KVD + +A+ + PT
Sbjct: 23 VVIDFYATWCGPCKMIAPKLE----ELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFL 78
Query: 105 FFK 107
F K
Sbjct: 79 FMK 81
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105
+V+FYA WCG CK + P + + + A I + KV+ + LA +G++ PT+ F
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYA---GKIYIYKVNVDKEPELARDFGIQSIPTIWF 111
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 31 TQDNFQSSIEKHDH----ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
+D F + + K ++++F A WCG C+ + P +++ A + KVD
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPG----AVFLKVDVD 76
Query: 87 QHTALAEQYGVRGYPTLKFFK 107
+ +AE+Y V PT F K
Sbjct: 77 ELKEVAEKYNVEAMPTFLFIK 97
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 31 TQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA 90
T F S+I + ++V+FYA WCG K + P K + Q K+D +
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQY----PQADFYKLDVDELGD 68
Query: 91 LAEQYGVRGYPTLKFFK 107
+A++ V PTL FK
Sbjct: 69 VAQKNEVSAMPTLLLFK 85
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 31 TQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT 89
+ + S++ D ++V+F+A WCG K + P K A Q + D K+D + +
Sbjct: 15 SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS----DAAFYKLDVDEVS 70
Query: 90 ALAEQYGVRGYPTLKFFK 107
+A++ V PTL F+K
Sbjct: 71 DVAQKAEVSSMPTLIFYK 88
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 35 FQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAE 93
+ S++ D ++V+F+A WCG K + P K A Q + D K+D + + +A+
Sbjct: 11 YDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS----DAAFYKLDVDEVSDVAQ 66
Query: 94 QYGVRGYPTLKFFK 107
+ V PTL F+K
Sbjct: 67 KAEVSSMPTLIFYK 80
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++++F A WCG + + P ++ LA + KVD + +AEQ+ V PT
Sbjct: 40 VVIDFTASWCGPSRIMAPVFA----DLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFL 95
Query: 105 FFKKRSI 111
F K+ +
Sbjct: 96 FMKEGDV 102
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG CK + P + L+ ++ +VD +A + V+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQ 78
Query: 105 FFKK 108
FFKK
Sbjct: 79 FFKK 82
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
++ +T +F S +E LV+F+A WCG K + P + A +KL D
Sbjct: 5 AIVKVTDADFDSKVESGVQ-LVDFWATWCGTSKMIAPVLEELAADYEGKADILKL---DV 60
Query: 86 TQHTALAEQYGVRGYPTLKFFK 107
++ + A +Y V PTL FK
Sbjct: 61 DENPSTAAKYEVMSIPTLIVFK 82
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG CK + P + L+ ++ +VD +A + V+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQ 78
Query: 105 FFKK 108
FFKK
Sbjct: 79 FFKK 82
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG CK + P + L+ ++ +VD +A + V+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQ 78
Query: 105 FFKK 108
FFKK
Sbjct: 79 FFKK 82
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++++F A WCG C+ + P +++ A + KVD + +AE Y V PT
Sbjct: 31 VIIDFTASWCGPCRVIAPVFAEYAKKFPG----AIFLKVDVDELKDVAEAYNVEAMPTFL 86
Query: 105 FFK 107
F K
Sbjct: 87 FIK 89
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG CK + P + L+ ++ +VD +A + V+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVNDCQDVASECEVKCMPTFQ 78
Query: 105 FFKK 108
FFKK
Sbjct: 79 FFKK 82
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 23 EEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAK 82
+++G ++ N ++++ I++ F+A WC C E K LQ G I L K
Sbjct: 28 QQNGSNIINGVNMKNTV-----IVLYFFAKWCQACTMQSTEMDK--LQ-KYYGKRIYLLK 79
Query: 83 VDATQHTALAEQYGVRGYPTLKFFKKRSII 112
VD ++ +LA ++ V+ PT+ K ++++
Sbjct: 80 VDLDKNESLARKFSVKSLPTIILLKNKTML 109
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG CK + P + L+ ++ +VD +A + V+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQ 78
Query: 105 FFKK 108
FFKK
Sbjct: 79 FFKK 82
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V F+APW C Q+ ++ +LA + + K++A ++E+Y + PT
Sbjct: 35 LVVHFWAPWAPQCAQM----NEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFL 90
Query: 105 FFKKRSIIE 113
FFK I+
Sbjct: 91 FFKNSQKID 99
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG CK + P + L+ ++ +VD +A + V+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQ 78
Query: 105 FFKK 108
FFKK
Sbjct: 79 FFKK 82
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
++ +T +F S +E LV+F+A CG CK + P + A +KL D
Sbjct: 4 AIVKVTDADFDSKVESGVQ-LVDFWATACGPCKMIAPVLEELAADYEGKADILKL---DV 59
Query: 86 TQHTALAEQYGVRGYPTLKFFK 107
++ + A +Y V PTL FK
Sbjct: 60 DENPSTAAKYEVMSIPTLIVFK 81
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG CK + P + L+ ++ +VD +A + V+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVDDCQDVASECEVKCTPTFQ 78
Query: 105 FFKK 108
FFKK
Sbjct: 79 FFKK 82
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V F+APW C Q+ ++ +LA + + K++A ++E+Y + PT
Sbjct: 41 LVVHFWAPWAPQCAQM----NEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFL 96
Query: 105 FFKKRSIIE 113
FFK I+
Sbjct: 97 FFKNSQKID 105
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 25 DGVLVLTQDNFQSSIEKH--DHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAK 82
+ ++ + + N Q +E+ +L F++ HC QL P A Q +G I LAK
Sbjct: 7 ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQ--YNGQFI-LAK 63
Query: 83 VDATQHTALAEQYGVRGYPTLKFFKK 108
+D +A Q+G+R PT+ F+
Sbjct: 64 LDCDAEQMIAAQFGLRAIPTVYLFQN 89
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
+VEF+A W C+ P Y+ +L+ G + KVD ++T ++ +Y V P K
Sbjct: 30 IVEFFANWSNDCQSFAPIYADLSLKYNCTG--LNFGKVDVGRYTDVSTRYKVSTSPLTK 86
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 26 GVLVLTQDNFQSSIEKHD--HILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
++ + + N Q ++E+ +L F++ HC QL P A Q G I LAK+
Sbjct: 8 NIVNINESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQY--HGQFI-LAKL 64
Query: 84 DATQHTALAEQYGVRGYPTLKFFKK 108
D +A Q+G+R PT+ F+
Sbjct: 65 DCDAEQXIAAQFGLRAIPTVYLFQN 89
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG K + P + L+ ++ +VD +A + V+ PT +
Sbjct: 23 VVVDFSATWCGPSKMIKPFFH----SLSEKYSNVIFLEVDVDDSQDVASESEVKSMPTFQ 78
Query: 105 FFKK 108
FFKK
Sbjct: 79 FFKK 82
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
+L F A WCG CKQ+ P Y ++L+ + + +D + + + + ++ PT
Sbjct: 49 VLANFSARWCGPCKQIAPYY----IELSENYPSLMFLVIDVDELSDFSASWEIKATPTFF 104
Query: 105 FFK 107
F +
Sbjct: 105 FLR 107
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG K + P + L+ ++ +VD +A + V+ PT +
Sbjct: 23 VVVDFSATWCGPAKMIKPFFH----SLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQ 78
Query: 105 FFKK 108
FFKK
Sbjct: 79 FFKK 82
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 38 SIEKHDHILVE-------FYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA 90
S+E+ +I+ E F A WCG CK + K A + T +K AKVDA ++
Sbjct: 26 SVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT----VKFAKVDADNNSE 81
Query: 91 LAEQYGVRGYPTL 103
+ + V PT
Sbjct: 82 IVSKCRVLQLPTF 94
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG K + P + L+ ++ +VD +A + V+ PT +
Sbjct: 34 VVVDFSATWCGPSKMIKPFFH----SLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQ 89
Query: 105 FFKK 108
FFKK
Sbjct: 90 FFKK 93
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 18 ADDVTEEDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGH 76
A+D V+ LT + F S + + + V +Y PW H + + ++ + +
Sbjct: 8 ANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRN 67
Query: 77 DIKL--AKVDATQHTALAEQYGVRGYPTLKFFKK 108
+ A++D ++ + E+ V G+PT++++ +
Sbjct: 68 HLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTR 101
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG CK + P + L+ ++ +VD +A + V+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVDDXQDVASEXEVKCMPTFQ 78
Query: 105 FFKK 108
FFKK
Sbjct: 79 FFKK 82
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A WCG K + P + L+ ++ +VD +A + V+ PT +
Sbjct: 23 VVVDFSATWCGPSKMIKPFFH----SLSEKYSNVIFLEVDVDDCQDVASECEVKRMPTFQ 78
Query: 105 FFKK 108
FFKK
Sbjct: 79 FFKK 82
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 40 EKHDHILVEFYAPWCGHCKQLVPEY 64
E+H I+V+F A WCG CK + P +
Sbjct: 22 EEHKPIVVDFTATWCGPCKMIAPLF 46
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 40 EKHDHILVEFYAPWCGHCKQLVPEY 64
E+H I+V F A WCG CK + P +
Sbjct: 22 EEHKPIVVAFTATWCGPCKMIAPLF 46
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLA-TDGHDIKL-AKVDATQHTALAEQYGVRGYPT 102
+ V+ + WCG CK+L K +L + H + L ++ + L ++YGV YPT
Sbjct: 30 LFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPT 89
Query: 103 LKFFKKRSIIEY 114
L F + Y
Sbjct: 90 LLFINSSGEVVY 101
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
+L F A WCG +Q+ P Y ++L+ + + +D + + + + ++ PT
Sbjct: 49 VLANFSARWCGPSRQIAPYY----IELSENYPSLMFLVIDVDELSDFSASWEIKATPTFF 104
Query: 105 FFK 107
F +
Sbjct: 105 FLR 107
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT----QHTALAEQYGVRGY 100
++++ YA WC CK+ +Y+ + Q+ D L + + T Q AL + V G
Sbjct: 31 VMLDLYADWCVACKEF-EKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGL 89
Query: 101 PTLKFF 106
PT+ FF
Sbjct: 90 PTILFF 95
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT----QHTALAEQYGVRGY 100
++++ YA WC CK+ +Y+ + Q+ D L + + T Q AL + V G
Sbjct: 34 VMLDLYADWCVACKEF-EKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGL 92
Query: 101 PTLKFF 106
PT+ FF
Sbjct: 93 PTILFF 98
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 20/78 (25%)
Query: 45 ILVEFYAPWCGHCKQLVP-------EYSKAALQLATDGHDIK-------LAKVDATQHTA 90
+ ++F+A WCG C+Q P +Y Q+ D K LA+V A A
Sbjct: 31 VYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQVPAEFTVA 90
Query: 91 LAEQ------YGVRGYPT 102
+ YGV+G PT
Sbjct: 91 FDPKGQTPRLYGVKGXPT 108
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 25/95 (26%)
Query: 41 KHDHILVEFYAPWCGHCKQLVPEYSKAA---------LQLATDGH--------------- 76
K + ++F+A WC C +P+ + A L + + GH
Sbjct: 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKG 80
Query: 77 -DIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS 110
D K V L E YGVR YPT F K
Sbjct: 81 LDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEG 115
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V+F A W G K + P + L+ ++ +VD +A + V+ PT +
Sbjct: 23 VVVDFSATWSGPSKMIKPFFH----SLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQ 78
Query: 105 FFKK 108
FFKK
Sbjct: 79 FFKK 82
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 32.0 bits (71), Expect = 0.13, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 20/98 (20%)
Query: 46 LVEFYAPWCGHCKQ-----------LVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQ 94
+V FY CG C++ L E+ K ALQ+AT A V+ L +
Sbjct: 46 IVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIAT------AAAVNCASEVDLCRK 99
Query: 95 YGVRGYPTLKFFKKRSIIEYGE---VTSVEYCYQRNWH 129
Y + P L FF R E +S+E+ N H
Sbjct: 100 YDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSH 137
>pdb|3GV1|A Chain A, Crystal Structure Of Disulfide Interchange Protein From
Neisseria Gonorrhoeae
pdb|3GV1|B Chain B, Crystal Structure Of Disulfide Interchange Protein From
Neisseria Gonorrhoeae
pdb|3GV1|C Chain C, Crystal Structure Of Disulfide Interchange Protein From
Neisseria Gonorrhoeae
Length = 147
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 87 QHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRN 127
+ T+L EQ+G G PTL F R+ Y +E ++N
Sbjct: 97 ETTSLGEQFGFNGTPTLVFPNGRTQSGYSPXPQLEEIIRKN 137
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH----TALAEQYGVRGY 100
++++F A WCG C++ +P K D D L +D + A A+ GV Y
Sbjct: 36 VMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVT-Y 94
Query: 101 P 101
P
Sbjct: 95 P 95
>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|B Chain B, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|C Chain C, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|D Chain D, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
Length = 404
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 53 WCGHCKQLVPEYSK-----AALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFK 107
WCGHC+ + L DG + KVDA +L E GV Y + F
Sbjct: 132 WCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGV--YEGDRLFL 189
Query: 108 KRSIIEYGEVTSVEY 122
S++E TSV Y
Sbjct: 190 AGSLVEP---TSVAY 201
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT----QHTALAEQYGVRGY 100
++++ YA WC K+ +Y+ + Q+ D L + + T Q AL + V G
Sbjct: 34 VMLDLYADWCVASKEF-EKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGL 92
Query: 101 PTLKFF 106
PT+ FF
Sbjct: 93 PTILFF 98
>pdb|2AYT|A Chain A, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
pdb|2AYT|B Chain B, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
Length = 237
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 49 FYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTL 103
F CG+C P + A A I +DA+++ LAEQ+ V G P +
Sbjct: 143 FVTTSCGYC----PSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKI 193
>pdb|2YWM|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
Length = 229
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 49 FYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTL 103
F CG+C P + A A I +DA+++ LAEQ+ V G P +
Sbjct: 143 FVTTSCGYC----PSAAVXAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKI 193
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 35 FQSSIEKHDHILVEFYAPWCGHCKQLVPE 63
F S+ K +V F+A WC C+ +P+
Sbjct: 27 FSSASLKGKAYIVNFFATWCPPCRSEIPD 55
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 29.3 bits (64), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGY 100
K ++V F+A WC C++ +P + A +D A+ E + G+
Sbjct: 27 KGQVVIVNFWATWCPPCREEIPSXXRLNAAXAGKPFRXLCVSIDEGGKVAVEEFFRKTGF 86
Query: 101 --PTLKFFKKRSIIEYG 115
P L KR YG
Sbjct: 87 TLPVLLDADKRVGKLYG 103
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 20 DVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIK 79
D+T E G+ + E +V F+ C HCK + K + +
Sbjct: 6 DITTEAGM---------AHFEGLSDAIVFFHKNLCPHCKNM----EKVLDKFGARAPQVA 52
Query: 80 LAKVDATQHTALAEQYGVRGYPTLKFFK 107
++ VD+ L ++ G PTL F +
Sbjct: 53 ISSVDSEARPELMKELGFERVPTLVFIR 80
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA--LAEQYGVR 98
K + + F+ WC HCK+ P + + G +I V ++ + YGV
Sbjct: 25 KGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN 84
Query: 99 GYPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRAVTSV 136
+P + R +++ +V+ + + N + V V
Sbjct: 85 -FPVV-LDTDRQVLDAYDVSPLPTTFLINPEGKVVKVV 120
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 24 EDGVLV-LTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATD------GH 76
EDG L+ +T + F+ ++ D IL Y+ C HC + P+ +A+ ++ G
Sbjct: 14 EDGRLIYITPEEFRQLLQ-GDAILA-VYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGS 71
Query: 77 DIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIE 113
I ++ A + + GV G PTL F+K+ I++
Sbjct: 72 LIGERELSAARLEM--NKAGVEGTPTLVFYKEGRIVD 106
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 28.9 bits (63), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA--LAEQYGVR 98
K + + F+ WC HCK+ P + + G +I V ++ + YGV
Sbjct: 22 KGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN 81
Query: 99 GYPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRAVTSV 136
+P + R +++ +V+ + + N + V V
Sbjct: 82 -FPVV-LDTDRQVLDAYDVSPLPTTFLINPEGKVVKVV 117
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105
+V+F CG C ++ P +S ++ +VD Q A + PT +F
Sbjct: 25 VVKFTMRGCGPCLRIAPAFSS----MSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQF 80
Query: 106 FKKRSIIE 113
F+ + I+
Sbjct: 81 FRNKVRID 88
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 32 QDNFQSSIE--KHDHILVEFYAPWCGHCKQLVPEYSK 66
+DN S++ K +V +A WCG C++ P SK
Sbjct: 12 KDNTPQSLQSLKAPVRIVNLWATWCGPCRKEXPAXSK 48
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKA 67
++V + WCG CK L P+++++
Sbjct: 42 LMVIIHKSWCGACKALKPKFAES 64
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSK 66
+LV F+A WC +C+ P +
Sbjct: 44 VLVNFWASWCPYCRDEXPSXDR 65
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKA 67
++V + WCG CK L P+++++
Sbjct: 49 LMVIIHKSWCGACKALKPKFAES 71
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 41 KHDHILVEFYAPWCGHCKQLVP 62
K +I ++ +A WCG C+ +P
Sbjct: 29 KGKYIYIDVWATWCGPCRGELP 50
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 46 LVEFYAPWCGHCKQLVPEYSKAALQLATD 74
++EF+ +C HC L P SK A D
Sbjct: 45 VLEFFGYFCPHCAHLEPVLSKHAKSFKDD 73
>pdb|3DVW|A Chain A, Crystal Structure Of Reduced Dsba1 From Neisseria
Meningitidis
Length = 193
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 46 LVEFYAPWCGHCKQLVPEYSKAALQLATD 74
++EF+ +C HC L P SK A D
Sbjct: 28 VLEFFGYFCPHCAHLEPVLSKHAKSFKDD 56
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 46 LVEFYAPWCGHCKQLVPEYSKAALQLATD 74
++EF+ +C HC L P SK A D
Sbjct: 28 VLEFFGYFCPHCAHLEPVLSKHAKSFKDD 56
>pdb|1A8Y|A Chain A, Crystal Structure Of Calsequestrin From Rabbit Skeletal
Muscle Sarcoplasmic Reticulum At 2.4 A Resolution
pdb|3US3|A Chain A, Recombinant Rabbit Skeletal Calsequestrin-Mpd Complex
pdb|3V1W|A Chain A, Molecular Basis For Multiple Ligand Binding Of
Calsequestrin And Potential Inhibition By Caffeine And
Gallocatecin
Length = 367
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 25 DGVLVLTQDNFQSSIEKHDHILVEFY-APWCGHCKQLVPEYSKAALQLAT---DGHDIKL 80
D V+ + N+++ +K++ + + ++ P Q E + L+LA + +
Sbjct: 13 DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGF 72
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY-GEVTS 119
VD+ + A+A++ G+ ++ FK+ +IEY GE ++
Sbjct: 73 GLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSA 112
>pdb|3TRQ|A Chain A, Crystal Structure Of Native Rabbit Skeletal Calsequestrin
pdb|3TRP|A Chain A, Crystal Structure Of Recombinant Rabbit Skeletal
Calsequestrin
Length = 353
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 25 DGVLVLTQDNFQSSIEKHDHILVEFY-APWCGHCKQLVPEYSKAALQLAT---DGHDIKL 80
D V+ + N+++ +K++ + + ++ P Q E + L+LA + +
Sbjct: 13 DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGF 72
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY-GEVTS 119
VD+ + A+A++ G+ ++ FK+ +IEY GE ++
Sbjct: 73 GLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSA 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,603,676
Number of Sequences: 62578
Number of extensions: 122429
Number of successful extensions: 606
Number of sequences better than 100.0: 174
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 180
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)