Query psy7943
Match_columns 142
No_of_seqs 111 out of 1714
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 22:47:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00443 Thioredoxin domain-co 99.9 9E-25 1.9E-29 146.8 13.0 131 1-136 1-142 (224)
2 cd03006 PDI_a_EFP1_N PDIa fami 99.9 6.6E-25 1.4E-29 133.4 10.7 103 21-128 5-112 (113)
3 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.3E-24 2.9E-29 130.3 10.0 98 26-128 2-100 (101)
4 PTZ00102 disulphide isomerase; 99.9 3.2E-24 6.9E-29 159.3 14.0 114 25-140 32-145 (477)
5 KOG0910|consensus 99.9 6.4E-25 1.4E-29 136.4 8.5 104 26-134 44-149 (150)
6 PF00085 Thioredoxin: Thioredo 99.9 7E-24 1.5E-28 127.2 10.9 100 28-132 2-103 (103)
7 cd02996 PDI_a_ERp44 PDIa famil 99.9 7.9E-24 1.7E-28 128.3 10.7 102 26-129 2-108 (108)
8 cd03065 PDI_b_Calsequestrin_N 99.9 1.6E-23 3.5E-28 128.1 10.5 110 21-133 5-119 (120)
9 cd02954 DIM1 Dim1 family; Dim1 99.9 3.1E-23 6.7E-28 125.2 10.6 89 32-123 2-93 (114)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 3.2E-23 7E-28 124.8 9.9 99 26-129 2-104 (104)
11 cd02994 PDI_a_TMX PDIa family, 99.9 4.9E-23 1.1E-27 123.4 10.4 100 26-131 2-101 (101)
12 cd02962 TMX2 TMX2 family; comp 99.9 1.9E-22 4.1E-27 128.3 13.3 107 8-116 11-126 (152)
13 cd03005 PDI_a_ERp46 PDIa famil 99.9 8E-23 1.7E-27 122.5 10.6 100 27-129 2-102 (102)
14 PHA02278 thioredoxin-like prot 99.9 5.4E-23 1.2E-27 123.1 9.7 89 32-123 4-97 (103)
15 PRK10996 thioredoxin 2; Provis 99.9 2.1E-22 4.6E-27 127.0 11.4 102 26-132 36-138 (139)
16 COG3118 Thioredoxin domain-con 99.9 9.1E-23 2E-27 139.2 9.8 107 24-135 22-132 (304)
17 KOG0190|consensus 99.9 9.3E-23 2E-27 148.6 10.1 117 22-140 22-139 (493)
18 cd02948 TRX_NDPK TRX domain, T 99.9 2.7E-22 5.9E-27 120.4 10.4 97 30-131 5-101 (102)
19 TIGR01126 pdi_dom protein disu 99.9 2.6E-22 5.7E-27 120.2 10.0 100 30-132 1-101 (102)
20 PRK09381 trxA thioredoxin; Pro 99.9 4.9E-22 1.1E-26 120.6 11.2 104 25-133 3-108 (109)
21 cd02997 PDI_a_PDIR PDIa family 99.9 4.6E-22 1E-26 119.6 10.9 100 27-129 2-104 (104)
22 cd02963 TRX_DnaJ TRX domain, D 99.9 3.6E-22 7.7E-27 121.6 10.0 99 29-131 8-110 (111)
23 cd03000 PDI_a_TMX3 PDIa family 99.9 3.6E-22 7.7E-27 120.3 9.9 98 32-132 6-103 (104)
24 cd02956 ybbN ybbN protein fami 99.9 3.5E-22 7.6E-27 118.6 9.6 91 34-129 2-95 (96)
25 cd02999 PDI_a_ERp44_like PDIa 99.9 1.7E-22 3.6E-27 120.8 8.1 84 40-129 16-100 (100)
26 cd03002 PDI_a_MPD1_like PDI fa 99.9 6E-22 1.3E-26 120.1 10.0 98 27-129 2-108 (109)
27 cd02985 TRX_CDSP32 TRX family, 99.9 8.7E-22 1.9E-26 118.4 9.6 92 31-129 2-99 (103)
28 cd03001 PDI_a_P5 PDIa family, 99.9 1.6E-21 3.6E-26 117.0 10.5 98 27-129 2-102 (103)
29 cd02993 PDI_a_APS_reductase PD 99.9 3.4E-21 7.5E-26 116.9 10.2 100 26-129 2-109 (109)
30 cd02998 PDI_a_ERp38 PDIa famil 99.9 7.3E-21 1.6E-25 114.4 10.0 100 27-129 2-105 (105)
31 TIGR01130 ER_PDI_fam protein d 99.9 7.3E-21 1.6E-25 140.7 11.9 112 26-139 2-115 (462)
32 cd02965 HyaE HyaE family; HyaE 99.9 7.6E-21 1.6E-25 114.1 9.2 96 25-123 10-108 (111)
33 TIGR01068 thioredoxin thioredo 99.8 2.2E-20 4.7E-25 111.5 10.6 97 31-132 2-100 (101)
34 cd02950 TxlA TRX-like protein 99.8 1.2E-20 2.7E-25 119.3 9.9 100 32-134 10-111 (142)
35 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 1.9E-20 4.1E-25 112.4 10.1 99 27-129 2-104 (104)
36 cd02989 Phd_like_TxnDC9 Phosdu 99.8 3.3E-20 7.2E-25 113.1 11.2 90 26-119 5-96 (113)
37 cd02953 DsbDgamma DsbD gamma f 99.8 7E-21 1.5E-25 114.6 8.2 92 33-129 2-103 (104)
38 cd02957 Phd_like Phosducin (Ph 99.8 2.1E-20 4.6E-25 114.1 9.9 89 25-118 4-96 (113)
39 cd02984 TRX_PICOT TRX domain, 99.8 2E-20 4.4E-25 111.1 9.5 90 31-123 1-92 (97)
40 cd02961 PDI_a_family Protein D 99.8 2.2E-20 4.7E-25 111.2 9.1 98 29-129 2-101 (101)
41 KOG0907|consensus 99.8 1.6E-20 3.5E-25 112.5 8.2 84 40-130 19-103 (106)
42 PLN00410 U5 snRNP protein, DIM 99.8 5E-20 1.1E-24 115.3 9.7 98 31-133 10-120 (142)
43 PTZ00051 thioredoxin; Provisio 99.8 6.1E-20 1.3E-24 109.3 9.3 89 30-123 6-95 (98)
44 cd02986 DLP Dim1 family, Dim1- 99.8 1.2E-19 2.6E-24 108.9 10.5 89 32-123 2-93 (114)
45 cd03007 PDI_a_ERp29_N PDIa fam 99.8 6.1E-20 1.3E-24 111.2 8.3 101 26-132 2-115 (116)
46 cd02992 PDI_a_QSOX PDIa family 99.8 2E-19 4.3E-24 109.9 10.6 87 26-112 2-91 (114)
47 cd02949 TRX_NTR TRX domain, no 99.8 1.9E-19 4E-24 107.1 9.4 86 39-129 10-96 (97)
48 KOG4277|consensus 99.8 6.6E-20 1.4E-24 125.5 7.7 94 41-136 42-135 (468)
49 cd02951 SoxW SoxW family; SoxW 99.8 3.1E-19 6.7E-24 110.8 9.4 100 32-136 3-122 (125)
50 cd02975 PfPDO_like_N Pyrococcu 99.8 2.7E-19 5.9E-24 109.1 8.9 93 35-133 15-110 (113)
51 TIGR00424 APS_reduc 5'-adenyly 99.8 7E-19 1.5E-23 128.8 10.9 105 23-131 349-461 (463)
52 PTZ00102 disulphide isomerase; 99.8 8.2E-19 1.8E-23 130.5 11.1 109 24-135 356-467 (477)
53 cd02987 Phd_like_Phd Phosducin 99.8 1.8E-18 3.8E-23 112.9 10.4 86 23-113 60-149 (175)
54 PLN02309 5'-adenylylsulfate re 99.8 1.5E-18 3.2E-23 127.0 11.1 106 23-132 343-456 (457)
55 TIGR01295 PedC_BrcD bacterioci 99.8 1.7E-18 3.8E-23 106.8 9.7 100 25-129 6-120 (122)
56 cd02947 TRX_family TRX family; 99.8 3.5E-18 7.7E-23 99.9 9.2 90 34-129 2-92 (93)
57 TIGR02738 TrbB type-F conjugat 99.8 1.2E-17 2.6E-22 106.5 11.4 90 38-132 46-152 (153)
58 KOG0190|consensus 99.7 4.8E-18 1E-22 124.1 7.6 105 25-134 366-474 (493)
59 cd02959 ERp19 Endoplasmic reti 99.7 2E-17 4.3E-22 101.4 8.5 99 32-134 9-114 (117)
60 PRK14018 trifunctional thiored 99.7 6.1E-17 1.3E-21 120.1 11.5 92 39-132 53-172 (521)
61 KOG0908|consensus 99.7 2.7E-17 5.8E-22 109.7 8.2 100 30-135 7-108 (288)
62 PRK03147 thiol-disulfide oxido 99.7 9.7E-17 2.1E-21 104.6 10.8 103 26-132 45-171 (173)
63 cd02988 Phd_like_VIAF Phosduci 99.7 7.4E-17 1.6E-21 106.6 9.8 88 23-117 80-171 (192)
64 KOG0912|consensus 99.7 1.4E-17 3E-22 114.0 6.4 106 31-138 2-111 (375)
65 TIGR00411 redox_disulf_1 small 99.7 7E-17 1.5E-21 93.0 8.5 80 45-132 2-81 (82)
66 cd02952 TRP14_like Human TRX-r 99.7 6.1E-17 1.3E-21 98.9 8.2 79 31-112 8-103 (119)
67 TIGR01130 ER_PDI_fam protein d 99.7 9.5E-17 2E-21 118.8 9.6 111 24-138 345-459 (462)
68 cd02955 SSP411 TRX domain, SSP 99.7 1.2E-16 2.5E-21 98.6 8.1 80 31-113 4-94 (124)
69 PRK15412 thiol:disulfide inter 99.7 3.5E-16 7.6E-21 103.2 10.9 88 40-135 66-178 (185)
70 cd02982 PDI_b'_family Protein 99.7 1.8E-16 3.9E-21 95.0 8.5 94 34-132 4-102 (103)
71 PTZ00062 glutaredoxin; Provisi 99.7 2E-16 4.3E-21 105.0 8.6 90 31-134 5-95 (204)
72 cd03008 TryX_like_RdCVF Trypar 99.7 1.1E-15 2.4E-20 96.6 9.5 74 41-114 24-127 (146)
73 cd03009 TryX_like_TryX_NRX Try 99.7 1.3E-15 2.9E-20 95.1 9.3 81 33-113 9-113 (131)
74 PRK00293 dipZ thiol:disulfide 99.6 2.7E-15 5.7E-20 113.6 12.1 100 27-132 454-569 (571)
75 PF13098 Thioredoxin_2: Thiore 99.6 5.6E-16 1.2E-20 94.3 6.5 88 40-129 3-112 (112)
76 PF13905 Thioredoxin_8: Thiore 99.6 3.4E-15 7.3E-20 88.3 9.6 70 42-112 1-95 (95)
77 TIGR02187 GlrX_arch Glutaredox 99.6 1.1E-15 2.4E-20 103.0 8.1 88 42-133 19-111 (215)
78 cd03010 TlpA_like_DsbE TlpA-li 99.6 4E-15 8.6E-20 92.5 9.0 86 33-123 16-126 (127)
79 KOG0191|consensus 99.6 2.4E-15 5.2E-20 109.3 8.5 101 32-137 37-138 (383)
80 TIGR02187 GlrX_arch Glutaredox 99.6 4.2E-15 9.1E-20 100.2 8.7 94 30-131 120-214 (215)
81 cd02964 TryX_like_family Trypa 99.6 6.6E-15 1.4E-19 92.2 8.9 75 39-113 14-113 (132)
82 PRK13728 conjugal transfer pro 99.6 1.2E-14 2.5E-19 94.6 10.2 85 46-135 73-173 (181)
83 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 1E-14 2.2E-19 90.1 8.7 91 28-123 6-118 (123)
84 KOG1731|consensus 99.6 2E-15 4.3E-20 111.0 6.1 111 21-133 35-153 (606)
85 TIGR02740 TraF-like TraF-like 99.6 7.8E-15 1.7E-19 101.8 8.8 89 41-134 165-265 (271)
86 TIGR01626 ytfJ_HI0045 conserve 99.6 1.8E-14 3.9E-19 94.1 9.0 92 34-127 51-174 (184)
87 TIGR00385 dsbE periplasmic pro 99.6 1.6E-14 3.6E-19 94.3 8.0 87 40-134 61-172 (173)
88 cd02967 mauD Methylamine utili 99.6 3.1E-14 6.8E-19 86.7 8.4 74 41-117 20-113 (114)
89 TIGR00412 redox_disulf_2 small 99.5 3.3E-14 7.1E-19 80.7 7.0 73 46-129 2-75 (76)
90 TIGR02661 MauD methylamine deh 99.5 9.9E-14 2.1E-18 91.8 10.0 99 29-132 59-178 (189)
91 cd02958 UAS UAS family; UAS is 99.5 4.5E-14 9.8E-19 86.2 7.5 100 33-134 8-112 (114)
92 PHA02125 thioredoxin-like prot 99.5 4.6E-14 9.9E-19 79.9 7.0 60 46-117 2-62 (75)
93 cd02973 TRX_GRX_like Thioredox 99.5 8.8E-14 1.9E-18 77.0 7.9 57 45-105 2-58 (67)
94 cd02966 TlpA_like_family TlpA- 99.5 2.2E-13 4.7E-18 82.4 8.6 79 33-113 10-111 (116)
95 COG2143 Thioredoxin-related pr 99.5 3.3E-13 7.2E-18 84.3 8.8 95 34-130 34-146 (182)
96 PF08534 Redoxin: Redoxin; In 99.5 3.8E-13 8.3E-18 85.4 9.3 86 30-115 16-130 (146)
97 cd02960 AGR Anterior Gradient 99.5 8.4E-14 1.8E-18 86.0 5.9 78 32-110 13-90 (130)
98 PF13899 Thioredoxin_7: Thiore 99.5 3.5E-13 7.7E-18 77.6 7.4 73 32-108 7-82 (82)
99 PRK11509 hydrogenase-1 operon 99.5 9.4E-13 2E-17 81.4 9.3 109 26-138 18-129 (132)
100 KOG0191|consensus 99.5 3.3E-13 7.2E-18 98.2 8.5 108 26-136 145-255 (383)
101 cd03012 TlpA_like_DipZ_like Tl 99.5 5.1E-13 1.1E-17 82.9 7.9 71 41-113 22-119 (126)
102 COG4232 Thiol:disulfide interc 99.5 3.2E-13 7E-18 100.2 7.9 101 28-132 457-567 (569)
103 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 6.7E-13 1.4E-17 77.4 7.5 76 41-123 11-86 (89)
104 PLN02919 haloacid dehalogenase 99.4 4E-13 8.7E-18 107.8 8.5 90 41-134 419-537 (1057)
105 smart00594 UAS UAS domain. 99.4 6.7E-13 1.4E-17 82.0 7.3 96 32-129 17-121 (122)
106 PLN02399 phospholipid hydroper 99.4 1.2E-12 2.7E-17 88.9 8.5 104 27-134 84-235 (236)
107 PTZ00056 glutathione peroxidas 99.4 1.9E-12 4.1E-17 86.3 8.2 106 26-135 23-180 (199)
108 PF01216 Calsequestrin: Calseq 99.4 1.3E-11 2.9E-16 86.4 11.3 117 20-139 29-150 (383)
109 PLN02412 probable glutathione 99.3 6.5E-12 1.4E-16 81.6 7.2 105 26-134 13-165 (167)
110 cd02969 PRX_like1 Peroxiredoxi 99.3 1.4E-11 3E-16 80.4 8.6 93 41-135 24-154 (171)
111 cd03017 PRX_BCP Peroxiredoxin 99.3 3E-11 6.5E-16 76.1 8.5 84 40-123 21-135 (140)
112 cd00340 GSH_Peroxidase Glutath 99.3 1.5E-11 3.2E-16 78.7 7.2 50 32-84 12-61 (152)
113 PF00578 AhpC-TSA: AhpC/TSA fa 99.3 1E-11 2.2E-16 76.5 6.1 74 41-114 24-123 (124)
114 KOG0914|consensus 99.3 2.1E-11 4.7E-16 80.3 7.8 97 14-112 113-218 (265)
115 KOG2501|consensus 99.3 1.8E-11 4E-16 77.2 7.2 77 40-116 31-133 (157)
116 TIGR02540 gpx7 putative glutat 99.3 2.7E-11 5.9E-16 77.6 7.9 97 32-132 12-152 (153)
117 PF03190 Thioredox_DsbH: Prote 99.3 1.3E-11 2.8E-16 78.9 6.0 94 21-114 16-117 (163)
118 cd03015 PRX_Typ2cys Peroxiredo 99.1 4.6E-10 9.9E-15 73.3 8.7 74 41-114 28-134 (173)
119 KOG0913|consensus 99.1 2.1E-11 4.7E-16 81.0 2.1 104 23-132 22-125 (248)
120 PTZ00256 glutathione peroxidas 99.1 4.9E-10 1.1E-14 73.9 7.7 102 28-133 26-181 (183)
121 cd02970 PRX_like2 Peroxiredoxi 99.1 9.5E-10 2.1E-14 69.8 8.8 43 42-86 24-66 (149)
122 PRK09437 bcp thioredoxin-depen 99.1 1.7E-09 3.7E-14 69.3 9.0 97 27-123 15-145 (154)
123 PRK00522 tpx lipid hydroperoxi 99.1 1.8E-09 3.9E-14 70.1 8.7 73 41-115 43-146 (167)
124 TIGR03137 AhpC peroxiredoxin. 99.0 1.9E-09 4.1E-14 71.3 8.4 74 41-114 30-133 (187)
125 COG0526 TrxA Thiol-disulfide i 99.0 1.9E-09 4.1E-14 64.9 7.6 68 42-112 32-102 (127)
126 cd03018 PRX_AhpE_like Peroxire 99.0 3.4E-09 7.3E-14 67.4 9.0 74 41-114 26-128 (149)
127 cd03014 PRX_Atyp2cys Peroxired 99.0 3.4E-09 7.4E-14 67.0 8.9 71 41-113 25-123 (143)
128 cd02971 PRX_family Peroxiredox 99.0 3E-09 6.4E-14 66.9 8.5 74 41-114 21-124 (140)
129 cd01659 TRX_superfamily Thiore 99.0 4.3E-09 9.3E-14 56.6 7.0 60 46-109 1-63 (69)
130 TIGR02196 GlrX_YruB Glutaredox 99.0 2.3E-09 4.9E-14 59.9 5.9 68 46-129 2-73 (74)
131 PF13192 Thioredoxin_3: Thiore 99.0 5.7E-09 1.2E-13 59.1 7.4 71 49-130 5-76 (76)
132 PF13728 TraF: F plasmid trans 98.9 6.2E-09 1.3E-13 70.2 8.2 80 41-123 119-210 (215)
133 PRK10382 alkyl hydroperoxide r 98.9 1E-08 2.3E-13 67.7 8.9 90 41-132 30-155 (187)
134 cd02968 SCO SCO (an acronym fo 98.9 6E-09 1.3E-13 65.7 7.3 55 30-84 10-68 (142)
135 PRK10954 periplasmic protein d 98.9 2E-08 4.3E-13 67.5 10.1 66 1-72 1-70 (207)
136 PRK13190 putative peroxiredoxi 98.9 6.5E-09 1.4E-13 69.6 7.6 90 41-132 26-153 (202)
137 KOG1672|consensus 98.9 4.6E-09 1E-13 68.2 6.3 85 25-113 66-151 (211)
138 PF02114 Phosducin: Phosducin; 98.9 1.4E-08 3.1E-13 70.3 9.0 88 25-117 125-217 (265)
139 PF14595 Thioredoxin_9: Thiore 98.9 2.2E-08 4.8E-13 62.3 7.6 75 41-119 40-118 (129)
140 TIGR02200 GlrX_actino Glutared 98.8 1.8E-08 4E-13 56.8 6.5 56 46-111 2-62 (77)
141 KOG2603|consensus 98.8 7.1E-08 1.5E-12 67.0 10.0 111 22-134 37-167 (331)
142 TIGR02739 TraF type-F conjugat 98.8 4.9E-08 1.1E-12 67.2 8.4 88 41-133 149-248 (256)
143 cd02991 UAS_ETEA UAS family, E 98.8 6.6E-08 1.4E-12 59.1 7.6 96 33-134 8-114 (116)
144 PF06110 DUF953: Eukaryotic pr 98.8 3E-08 6.5E-13 60.5 6.0 68 40-110 17-100 (119)
145 PRK15000 peroxidase; Provision 98.8 7.8E-08 1.7E-12 64.3 8.5 89 41-131 33-160 (200)
146 TIGR02180 GRX_euk Glutaredoxin 98.7 3.1E-08 6.6E-13 56.9 5.3 55 46-105 1-60 (84)
147 PRK10606 btuE putative glutath 98.7 1E-07 2.2E-12 62.7 8.2 56 27-85 10-65 (183)
148 PRK10877 protein disulfide iso 98.7 3.2E-08 6.9E-13 67.5 6.0 83 41-132 106-230 (232)
149 PRK13189 peroxiredoxin; Provis 98.7 8.6E-08 1.9E-12 65.0 7.8 90 41-132 34-162 (222)
150 PRK13191 putative peroxiredoxi 98.7 1.2E-07 2.6E-12 64.0 8.1 90 41-132 32-160 (215)
151 PRK13703 conjugal pilus assemb 98.7 1.1E-07 2.4E-12 65.1 7.8 87 42-133 143-241 (248)
152 PTZ00137 2-Cys peroxiredoxin; 98.7 1.8E-07 3.9E-12 64.7 8.6 88 41-130 97-222 (261)
153 cd03016 PRX_1cys Peroxiredoxin 98.7 1.3E-07 2.8E-12 63.4 7.6 87 44-132 28-153 (203)
154 PF07912 ERp29_N: ERp29, N-ter 98.6 2.3E-06 5.1E-11 51.9 11.2 105 26-134 5-120 (126)
155 PRK13599 putative peroxiredoxi 98.6 3.4E-07 7.5E-12 61.8 8.5 74 41-114 27-133 (215)
156 KOG3425|consensus 98.6 2.5E-07 5.3E-12 55.7 6.7 73 33-108 13-104 (128)
157 PF07449 HyaE: Hydrogenase-1 e 98.6 4.3E-07 9.2E-12 54.3 7.8 95 24-121 8-105 (107)
158 PF13848 Thioredoxin_6: Thiore 98.6 1.2E-06 2.5E-11 57.4 10.3 101 26-131 78-184 (184)
159 PRK11657 dsbG disulfide isomer 98.6 1.9E-07 4.1E-12 64.5 6.7 84 42-130 117-249 (251)
160 PTZ00253 tryparedoxin peroxida 98.6 4.3E-07 9.3E-12 60.7 8.1 75 40-114 34-141 (199)
161 PF00462 Glutaredoxin: Glutare 98.5 1.2E-06 2.7E-11 47.0 7.8 51 46-105 1-55 (60)
162 KOG3414|consensus 98.5 1.7E-06 3.7E-11 52.5 8.9 78 32-112 11-90 (142)
163 TIGR03143 AhpF_homolog putativ 98.5 5.5E-07 1.2E-11 68.8 8.4 91 30-129 463-554 (555)
164 cd03020 DsbA_DsbC_DsbG DsbA fa 98.5 4.9E-07 1.1E-11 60.3 6.5 78 41-128 76-196 (197)
165 PRK11200 grxA glutaredoxin 1; 98.5 6.1E-07 1.3E-11 51.8 5.9 57 45-105 2-64 (85)
166 PRK15317 alkyl hydroperoxide r 98.5 1.1E-06 2.5E-11 66.6 8.3 93 30-131 103-196 (517)
167 cd02976 NrdH NrdH-redoxin (Nrd 98.4 7E-07 1.5E-11 49.5 5.3 51 46-105 2-56 (73)
168 KOG0911|consensus 98.4 2.1E-07 4.5E-12 62.0 2.7 78 38-119 13-91 (227)
169 TIGR02183 GRXA Glutaredoxin, G 98.4 1.3E-06 2.8E-11 50.5 5.3 56 46-105 2-63 (86)
170 PF13462 Thioredoxin_4: Thiore 98.3 6.9E-06 1.5E-10 52.7 8.9 84 41-131 11-162 (162)
171 cd03023 DsbA_Com1_like DsbA fa 98.3 3.9E-06 8.5E-11 53.2 7.5 31 41-71 4-34 (154)
172 TIGR03140 AhpF alkyl hydropero 98.3 5.5E-06 1.2E-10 62.9 8.4 94 30-132 104-198 (515)
173 COG1225 Bcp Peroxiredoxin [Pos 98.3 1.2E-05 2.6E-10 51.4 8.3 91 23-113 11-133 (157)
174 cd03419 GRX_GRXh_1_2_like Glut 98.3 2.4E-06 5.3E-11 48.7 4.7 53 46-105 2-59 (82)
175 PF02966 DIM1: Mitosis protein 98.3 4.9E-05 1.1E-09 46.8 10.4 89 31-123 7-99 (133)
176 PF11009 DUF2847: Protein of u 98.2 2.9E-05 6.3E-10 46.3 9.2 81 30-113 5-92 (105)
177 PHA03050 glutaredoxin; Provisi 98.2 5E-06 1.1E-10 50.2 6.1 64 36-105 7-75 (108)
178 TIGR02190 GlrX-dom Glutaredoxi 98.2 6.1E-06 1.3E-10 46.9 6.1 57 42-105 6-63 (79)
179 cd03019 DsbA_DsbA DsbA family, 98.2 1.1E-05 2.3E-10 52.6 7.7 32 41-72 14-45 (178)
180 cd03072 PDI_b'_ERp44 PDIb' fam 98.2 1.5E-05 3.3E-10 48.3 7.7 100 28-134 2-109 (111)
181 TIGR02194 GlrX_NrdH Glutaredox 98.2 9.1E-06 2E-10 45.3 5.6 65 46-123 1-68 (72)
182 COG1331 Highly conserved prote 98.1 4.7E-06 1E-10 63.8 5.0 93 22-114 23-123 (667)
183 cd02981 PDI_b_family Protein D 98.1 4.1E-05 8.9E-10 45.0 7.8 88 32-131 7-96 (97)
184 PF05768 DUF836: Glutaredoxin- 98.1 1.2E-05 2.6E-10 46.0 5.1 78 45-130 1-81 (81)
185 TIGR02181 GRX_bact Glutaredoxi 98.1 1.5E-05 3.3E-10 45.1 5.3 53 46-105 1-55 (79)
186 cd02066 GRX_family Glutaredoxi 98.0 3.1E-05 6.7E-10 42.5 6.3 51 46-105 2-56 (72)
187 cd03027 GRX_DEP Glutaredoxin ( 98.0 3.8E-05 8.2E-10 42.8 6.2 51 46-105 3-57 (73)
188 TIGR02189 GlrX-like_plant Glut 98.0 2.1E-05 4.6E-10 46.7 5.4 53 46-105 10-67 (99)
189 cd03418 GRX_GRXb_1_3_like Glut 98.0 4.7E-05 1E-09 42.5 6.2 51 46-105 2-57 (75)
190 cd02983 P5_C P5 family, C-term 98.0 0.00029 6.2E-09 43.9 10.2 104 27-136 4-118 (130)
191 cd03073 PDI_b'_ERp72_ERp57 PDI 97.9 0.0001 2.2E-09 44.7 7.3 98 30-132 4-110 (111)
192 cd03029 GRX_hybridPRX5 Glutare 97.9 6.7E-05 1.4E-09 41.7 6.0 53 46-105 3-56 (72)
193 PRK10329 glutaredoxin-like pro 97.9 9E-05 1.9E-09 42.3 6.4 69 46-130 3-74 (81)
194 COG0695 GrxC Glutaredoxin and 97.8 8.2E-05 1.8E-09 42.4 5.7 53 46-105 3-59 (80)
195 cd02972 DsbA_family DsbA famil 97.8 8E-05 1.7E-09 43.2 5.9 61 46-107 1-91 (98)
196 TIGR03143 AhpF_homolog putativ 97.8 0.00017 3.7E-09 55.4 9.0 87 41-133 365-454 (555)
197 TIGR00365 monothiol glutaredox 97.8 0.00025 5.5E-09 41.9 7.2 60 36-105 6-73 (97)
198 PRK10638 glutaredoxin 3; Provi 97.6 0.00029 6.2E-09 40.3 5.9 53 46-105 4-58 (83)
199 cd03028 GRX_PICOT_like Glutare 97.6 0.00042 9.1E-09 40.3 6.3 45 52-105 21-69 (90)
200 KOG3171|consensus 97.5 0.00051 1.1E-08 45.9 6.4 82 27-113 141-225 (273)
201 PF00837 T4_deiodinase: Iodoth 97.5 0.0009 2E-08 45.6 7.2 62 21-83 78-142 (237)
202 KOG1752|consensus 97.4 0.0012 2.6E-08 39.5 6.5 53 46-105 16-73 (104)
203 PF13743 Thioredoxin_5: Thiore 97.3 0.0016 3.5E-08 42.7 7.0 26 48-73 2-27 (176)
204 PRK12759 bifunctional gluaredo 97.3 0.001 2.2E-08 49.4 6.1 51 46-105 4-66 (410)
205 PRK10824 glutaredoxin-4; Provi 97.2 0.0022 4.7E-08 39.1 6.4 63 35-105 8-76 (115)
206 PF13848 Thioredoxin_6: Thiore 97.2 0.0038 8.2E-08 40.7 8.1 71 60-139 8-81 (184)
207 cd03013 PRX5_like Peroxiredoxi 97.1 0.0019 4.1E-08 41.5 5.8 45 41-85 28-75 (155)
208 PTZ00062 glutaredoxin; Provisi 97.1 0.0028 6.2E-08 42.5 6.8 45 52-105 126-174 (204)
209 cd03069 PDI_b_ERp57 PDIb famil 97.1 0.0083 1.8E-07 35.8 8.0 88 31-131 7-102 (104)
210 PF02630 SCO1-SenC: SCO1/SenC; 97.1 0.013 2.9E-07 38.3 9.3 63 25-87 35-100 (174)
211 PF01323 DSBA: DSBA-like thior 97.0 0.0094 2E-07 39.2 8.2 37 45-83 1-37 (193)
212 COG1651 DsbG Protein-disulfide 96.8 0.0064 1.4E-07 41.8 6.6 37 90-132 206-242 (244)
213 KOG3170|consensus 96.8 0.0072 1.6E-07 40.1 6.3 80 24-110 90-172 (240)
214 cd03067 PDI_b_PDIR_N PDIb fami 96.5 0.019 4.1E-07 33.9 5.9 93 32-130 9-109 (112)
215 cd03066 PDI_b_Calsequestrin_mi 96.4 0.073 1.6E-06 31.5 8.3 89 31-131 7-99 (102)
216 COG1999 Uncharacterized protei 96.3 0.064 1.4E-06 36.2 8.5 59 29-87 54-116 (207)
217 KOG2640|consensus 96.0 0.0018 3.9E-08 45.6 -0.1 88 41-134 75-163 (319)
218 cd03031 GRX_GRX_like Glutaredo 95.9 0.049 1.1E-06 34.7 6.3 51 46-105 2-66 (147)
219 cd02974 AhpF_NTD_N Alkyl hydro 95.9 0.11 2.3E-06 30.5 7.3 72 42-131 19-92 (94)
220 cd02990 UAS_FAF1 UAS family, F 95.7 0.15 3.3E-06 32.1 7.6 96 33-133 8-133 (136)
221 cd02978 KaiB_like KaiB-like fa 95.2 0.21 4.6E-06 27.7 6.3 63 46-110 4-66 (72)
222 KOG2792|consensus 95.0 0.24 5.2E-06 34.4 7.4 94 39-134 136-276 (280)
223 COG3019 Predicted metal-bindin 94.9 0.36 7.8E-06 30.4 7.3 75 44-132 26-103 (149)
224 cd03060 GST_N_Omega_like GST_N 94.6 0.35 7.7E-06 26.3 6.4 52 47-105 2-54 (71)
225 PF06053 DUF929: Domain of unk 94.6 0.55 1.2E-05 32.6 8.4 61 38-108 54-114 (249)
226 cd02977 ArsC_family Arsenate R 94.5 0.047 1E-06 32.5 2.9 20 47-66 2-21 (105)
227 KOG2507|consensus 94.5 0.25 5.4E-06 36.7 6.9 90 41-132 17-110 (506)
228 TIGR02654 circ_KaiB circadian 94.4 0.26 5.5E-06 28.5 5.6 74 44-119 4-77 (87)
229 cd03068 PDI_b_ERp72 PDIb famil 94.4 0.6 1.3E-05 28.0 8.0 89 31-131 7-106 (107)
230 PRK09301 circadian clock prote 94.3 0.26 5.6E-06 29.3 5.6 76 42-119 5-80 (103)
231 PRK15317 alkyl hydroperoxide r 94.0 0.48 1E-05 36.4 8.1 74 42-132 18-93 (517)
232 KOG0855|consensus 93.9 0.27 5.8E-06 32.0 5.4 70 41-110 89-185 (211)
233 KOG2244|consensus 93.8 0.045 9.8E-07 41.8 2.1 82 25-109 95-187 (786)
234 COG2761 FrnE Predicted dithiol 93.8 0.082 1.8E-06 36.0 3.2 43 90-137 175-217 (225)
235 cd03036 ArsC_like Arsenate Red 93.6 0.11 2.4E-06 31.4 3.3 57 47-110 2-60 (111)
236 COG3531 Predicted protein-disu 93.6 0.48 1E-05 31.6 6.3 42 90-133 165-209 (212)
237 PRK01655 spxA transcriptional 93.5 0.18 3.8E-06 31.5 4.1 21 46-66 2-22 (131)
238 cd03037 GST_N_GRX2 GST_N famil 93.4 0.48 1E-05 25.7 5.4 51 48-105 3-53 (71)
239 TIGR03140 AhpF alkyl hydropero 93.1 0.83 1.8E-05 35.1 8.0 75 42-132 18-94 (515)
240 PF04592 SelP_N: Selenoprotein 93.0 0.25 5.4E-06 33.8 4.5 48 40-87 24-72 (238)
241 COG0450 AhpC Peroxiredoxin [Po 93.0 1.1 2.3E-05 29.9 7.3 88 42-131 33-159 (194)
242 cd03035 ArsC_Yffb Arsenate Red 92.8 0.17 3.6E-06 30.3 3.2 20 47-66 2-21 (105)
243 TIGR01617 arsC_related transcr 92.7 0.25 5.5E-06 30.0 4.0 20 47-66 2-21 (117)
244 cd03040 GST_N_mPGES2 GST_N fam 92.6 0.99 2.1E-05 24.8 6.1 53 46-106 2-54 (77)
245 cd03041 GST_N_2GST_N GST_N fam 92.6 1 2.2E-05 24.9 6.1 53 46-105 2-56 (77)
246 PHA03075 glutaredoxin-like pro 92.5 0.22 4.9E-06 30.2 3.3 30 43-72 2-31 (123)
247 cd00570 GST_N_family Glutathio 92.2 0.69 1.5E-05 24.2 5.0 51 48-105 3-55 (71)
248 PRK12559 transcriptional regul 92.1 0.31 6.7E-06 30.4 3.8 21 46-66 2-22 (131)
249 COG4545 Glutaredoxin-related p 91.8 0.7 1.5E-05 25.9 4.5 21 47-67 5-25 (85)
250 PF08139 LPAM_1: Prokaryotic m 91.7 0.14 3E-06 22.2 1.4 18 1-18 7-24 (25)
251 cd03032 ArsC_Spx Arsenate Redu 91.7 0.4 8.7E-06 29.1 3.9 21 46-66 2-22 (115)
252 TIGR02742 TrbC_Ftype type-F co 91.6 0.21 4.6E-06 31.1 2.7 23 88-110 60-82 (130)
253 cd03051 GST_N_GTT2_like GST_N 91.2 1.4 3.1E-05 23.7 6.0 52 47-105 2-57 (74)
254 PF09673 TrbC_Ftype: Type-F co 91.1 1.6 3.5E-05 26.5 6.1 45 59-108 36-80 (113)
255 PRK13344 spxA transcriptional 90.1 0.6 1.3E-05 29.2 3.7 21 46-66 2-22 (132)
256 KOG0852|consensus 89.9 2.3 4.9E-05 28.0 6.2 74 40-113 31-137 (196)
257 cd03059 GST_N_SspA GST_N famil 89.4 2.2 4.7E-05 23.0 5.5 51 47-104 2-53 (73)
258 COG3011 Predicted thiol-disulf 88.7 3.5 7.5E-05 26.0 6.3 65 41-110 5-70 (137)
259 COG3634 AhpF Alkyl hydroperoxi 88.5 1.5 3.3E-05 32.3 5.2 87 30-123 103-190 (520)
260 cd03024 DsbA_FrnE DsbA family, 87.9 0.53 1.1E-05 31.1 2.5 36 89-129 165-200 (201)
261 cd03045 GST_N_Delta_Epsilon GS 86.4 3.6 7.9E-05 22.2 5.9 51 47-104 2-56 (74)
262 cd03055 GST_N_Omega GST_N fami 86.4 4.4 9.5E-05 23.1 6.3 53 46-105 19-72 (89)
263 PF04134 DUF393: Protein of un 85.2 2.4 5.1E-05 25.4 4.2 57 49-110 2-61 (114)
264 PF13417 GST_N_3: Glutathione 83.3 5.6 0.00012 21.7 6.1 69 49-133 2-71 (75)
265 cd03033 ArsC_15kD Arsenate Red 83.2 1.6 3.5E-05 26.5 2.8 21 46-66 2-22 (113)
266 PF13778 DUF4174: Domain of un 82.9 8.5 0.00018 23.5 6.7 84 45-132 12-111 (118)
267 PRK13730 conjugal transfer pil 82.5 1.5 3.2E-05 29.5 2.6 34 88-121 151-184 (212)
268 cd03025 DsbA_FrnE_like DsbA fa 79.6 2 4.4E-05 28.1 2.6 22 89-110 159-180 (193)
269 cd03025 DsbA_FrnE_like DsbA fa 79.5 2.8 6.1E-05 27.4 3.2 28 45-72 2-29 (193)
270 PF00255 GSHPx: Glutathione pe 79.5 4.5 9.7E-05 24.4 3.8 56 28-86 7-62 (108)
271 PF09695 YtfJ_HI0045: Bacteria 79.3 10 0.00022 24.6 5.4 94 34-129 29-154 (160)
272 TIGR03516 ppisom_GldI peptidyl 78.7 1.7 3.6E-05 28.7 1.9 39 1-40 1-39 (177)
273 PF07689 KaiB: KaiB domain; I 78.5 0.76 1.6E-05 26.3 0.2 70 49-120 3-72 (82)
274 TIGR03521 GldG gliding-associa 77.2 33 0.00073 26.9 11.5 78 24-101 29-116 (552)
275 PF06764 DUF1223: Protein of u 74.8 22 0.00047 24.1 6.4 57 46-105 2-76 (202)
276 PF11777 DUF3316: Protein of u 74.7 3.1 6.8E-05 25.2 2.2 16 1-16 1-16 (114)
277 cd03022 DsbA_HCCA_Iso DsbA fam 74.4 2.7 5.8E-05 27.4 2.1 30 90-123 158-187 (192)
278 PF08194 DIM: DIM protein; In 73.6 7 0.00015 18.6 2.7 14 1-14 1-14 (36)
279 PF06291 Lambda_Bor: Bor prote 73.5 2.7 5.9E-05 24.8 1.7 19 1-19 1-19 (97)
280 PRK10449 heat-inducible protei 73.4 2.4 5.1E-05 26.8 1.5 19 1-19 1-19 (140)
281 COG1393 ArsC Arsenate reductas 72.8 5.2 0.00011 24.5 2.9 21 46-66 3-23 (117)
282 PF00879 Defensin_propep: Defe 72.4 12 0.00025 19.4 3.7 19 1-19 1-19 (52)
283 cd03034 ArsC_ArsC Arsenate Red 72.3 4 8.6E-05 24.6 2.3 20 47-66 2-21 (112)
284 PF02402 Lysis_col: Lysis prot 72.2 1.4 3E-05 21.8 0.2 19 1-19 1-21 (46)
285 PF09822 ABC_transp_aux: ABC-t 71.7 31 0.00068 24.1 10.0 74 26-99 8-88 (271)
286 TIGR00014 arsC arsenate reduct 71.7 4.2 9E-05 24.6 2.3 20 47-66 2-21 (114)
287 PF11153 DUF2931: Protein of u 71.1 4.9 0.00011 27.3 2.7 19 1-19 1-19 (216)
288 PRK11443 lipoprotein; Provisio 71.1 3.7 7.9E-05 25.4 1.9 18 1-18 1-18 (124)
289 KOG1651|consensus 70.2 28 0.0006 22.8 6.7 59 26-86 18-76 (171)
290 COG0386 BtuE Glutathione perox 68.0 20 0.00042 23.3 4.7 58 26-86 9-66 (162)
291 PF09403 FadA: Adhesion protei 66.7 1.9 4E-05 26.8 0.0 19 1-19 1-19 (126)
292 PF11287 DUF3088: Protein of u 66.2 14 0.0003 22.5 3.6 53 53-109 23-78 (112)
293 COG5494 Predicted thioredoxin/ 65.5 22 0.00047 24.4 4.8 71 49-131 16-86 (265)
294 TIGR01616 nitro_assoc nitrogen 65.3 9.6 0.00021 23.6 3.0 23 45-67 2-24 (126)
295 PRK10853 putative reductase; P 64.6 8 0.00017 23.6 2.5 21 46-66 2-22 (118)
296 PF11106 YjbE: Exopolysacchari 63.9 7.2 0.00016 21.8 1.9 16 1-16 1-16 (80)
297 PF05643 DUF799: Putative bact 63.0 22 0.00048 24.3 4.5 19 1-19 1-19 (215)
298 PRK09810 entericidin A; Provis 62.8 8.8 0.00019 18.8 1.9 12 1-12 2-13 (41)
299 PRK10598 lipoprotein; Provisio 62.6 18 0.00038 24.2 3.9 37 1-42 1-39 (186)
300 KOG1422|consensus 62.1 29 0.00063 23.7 4.9 69 53-136 20-88 (221)
301 PF11714 Inhibitor_I53: Thromb 61.9 9.6 0.00021 20.9 2.2 16 1-16 1-16 (78)
302 PF03960 ArsC: ArsC family; I 61.3 16 0.00036 21.7 3.5 18 49-66 1-18 (110)
303 PRK10026 arsenate reductase; P 61.0 13 0.00028 23.6 3.0 22 46-67 4-25 (141)
304 PRK13883 conjugal transfer pro 60.8 7.1 0.00015 25.1 1.8 18 1-18 1-18 (151)
305 COG2077 Tpx Peroxiredoxin [Pos 60.7 43 0.00093 21.6 6.9 45 40-86 42-87 (158)
306 KOG0912|consensus 59.6 35 0.00075 24.9 5.1 106 28-137 213-323 (375)
307 COG5429 Uncharacterized secret 59.0 20 0.00043 24.9 3.7 65 42-109 41-121 (261)
308 PF13956 Ibs_toxin: Toxin Ibs, 58.8 5.9 0.00013 15.6 0.8 6 1-6 2-7 (19)
309 PF05968 Bacillus_PapR: Bacill 58.4 13 0.00028 18.5 2.1 16 1-16 1-16 (48)
310 PF14060 DUF4252: Domain of un 57.8 45 0.00099 21.0 6.0 29 99-129 121-153 (155)
311 COG0821 gcpE 1-hydroxy-2-methy 57.5 22 0.00048 26.1 3.9 80 53-134 263-352 (361)
312 PRK09936 hypothetical protein; 56.8 60 0.0013 23.4 5.9 50 1-50 1-60 (296)
313 PRK10081 entericidin B membran 54.9 15 0.00032 18.7 2.0 12 1-12 2-13 (48)
314 KOG1364|consensus 54.5 16 0.00035 26.8 2.9 57 77-135 132-191 (356)
315 KOG4277|consensus 54.4 72 0.0016 23.3 6.0 70 40-110 248-325 (468)
316 cd03052 GST_N_GDAP1 GST_N fami 54.4 34 0.00074 18.5 6.5 51 47-104 2-56 (73)
317 PF10880 DUF2673: Protein of u 53.6 28 0.00061 18.2 3.0 15 1-15 1-15 (65)
318 PRK00366 ispG 4-hydroxy-3-meth 53.4 31 0.00067 25.5 4.2 70 54-123 271-349 (360)
319 COG5510 Predicted small secret 52.8 19 0.0004 17.9 2.1 8 1-8 2-9 (44)
320 PRK04011 peptide chain release 52.5 95 0.0021 23.5 6.8 35 62-96 367-401 (411)
321 PRK10299 PhoPQ regulatory prot 52.5 9 0.0002 19.2 1.0 13 1-13 1-13 (47)
322 COG5633 Predicted periplasmic 51.2 13 0.00029 22.7 1.8 19 1-19 1-19 (123)
323 cd03056 GST_N_4 GST_N family, 51.2 36 0.00079 17.9 6.1 51 48-105 3-57 (73)
324 PF12276 DUF3617: Protein of u 50.8 18 0.0004 23.1 2.6 15 1-15 1-15 (162)
325 smart00053 DYNc Dynamin, GTPas 50.7 83 0.0018 21.9 7.8 68 41-108 111-201 (240)
326 PF12099 DUF3575: Protein of u 50.2 21 0.00046 23.8 2.9 18 1-18 1-18 (189)
327 PRK15346 outer membrane secret 50.1 47 0.001 25.8 5.0 18 1-18 1-18 (499)
328 PRK11372 lysozyme inhibitor; P 49.1 14 0.0003 22.3 1.7 16 1-16 3-18 (109)
329 PRK10053 hypothetical protein; 49.1 15 0.00034 22.9 1.9 13 1-13 1-13 (130)
330 PF06953 ArsD: Arsenical resis 48.0 66 0.0014 19.9 4.8 40 90-133 63-102 (123)
331 TIGR00156 conserved hypothetic 45.9 19 0.00041 22.4 1.9 12 1-12 1-12 (126)
332 PF15621 PROL5-SMR: Proline-ri 45.8 15 0.00033 22.3 1.5 19 1-19 1-19 (113)
333 PRK12407 flgH flagellar basal 44.9 19 0.0004 24.8 2.0 18 1-18 1-18 (221)
334 PF12393 Dr_adhesin: Dr family 44.4 26 0.00057 14.4 2.2 15 1-15 1-15 (21)
335 PRK13835 conjugal transfer pro 44.3 21 0.00045 22.8 2.0 19 1-19 1-19 (145)
336 PF10731 Anophelin: Thrombin i 44.0 28 0.0006 18.6 2.1 15 3-17 4-18 (65)
337 cd03022 DsbA_HCCA_Iso DsbA fam 43.7 54 0.0012 21.2 4.1 25 48-72 3-27 (192)
338 TIGR03759 conj_TIGR03759 integ 43.6 48 0.001 22.4 3.7 24 42-65 108-131 (200)
339 PF11912 DUF3430: Protein of u 43.6 22 0.00048 23.8 2.2 16 1-16 1-16 (212)
340 PRK15209 long polar fimbrial p 43.5 35 0.00076 22.1 3.1 12 1-12 1-12 (174)
341 TIGR02209 ftsL_broad cell divi 43.2 26 0.00056 19.7 2.2 16 1-16 1-16 (85)
342 PF07437 YfaZ: YfaZ precursor; 43.2 23 0.0005 23.5 2.1 17 1-17 1-17 (180)
343 PRK13792 lysozyme inhibitor; P 42.4 23 0.00051 22.0 2.0 13 1-13 1-13 (127)
344 PRK10903 peptidyl-prolyl cis-t 42.1 58 0.0013 21.7 4.0 21 41-61 36-57 (190)
345 PRK11622 hypothetical protein; 41.5 1.5E+02 0.0032 22.1 8.9 45 1-51 1-47 (401)
346 TIGR02052 MerP mercuric transp 41.1 22 0.00048 19.4 1.7 15 1-15 1-15 (92)
347 PRK11627 hypothetical protein; 40.9 26 0.00056 23.5 2.1 19 1-19 2-20 (192)
348 PF04202 Mfp-3: Foot protein 3 40.5 30 0.00066 18.8 1.9 15 1-15 1-15 (71)
349 PF10956 DUF2756: Protein of u 40.0 24 0.00053 20.9 1.7 12 1-12 1-12 (104)
350 PF03032 Brevenin: Brevenin/es 39.9 23 0.00049 17.8 1.3 12 1-12 3-14 (46)
351 PRK10350 hypothetical protein; 39.2 31 0.00067 21.5 2.1 17 1-18 1-17 (145)
352 PRK10780 periplasmic chaperone 39.1 27 0.00059 22.6 2.0 14 1-14 1-14 (165)
353 cd03049 GST_N_3 GST_N family, 38.9 63 0.0014 17.1 3.3 53 48-105 3-56 (73)
354 TIGR02652 conserved hypothetic 37.9 13 0.00028 23.5 0.3 14 53-66 11-24 (163)
355 PF09654 DUF2396: Protein of u 37.7 13 0.00027 23.5 0.3 14 53-66 8-21 (161)
356 PF05988 DUF899: Bacterial pro 37.7 82 0.0018 21.5 4.1 33 51-85 82-114 (211)
357 PHA02151 hypothetical protein 37.7 21 0.00046 23.1 1.3 16 40-55 201-216 (217)
358 TIGR00752 slp outer membrane l 37.6 16 0.00035 24.3 0.8 19 1-19 2-20 (182)
359 PF14369 zf-RING_3: zinc-finge 37.0 9.9 0.00021 17.8 -0.2 11 52-62 3-13 (35)
360 PF10855 DUF2648: Protein of u 36.7 17 0.00037 16.7 0.5 12 1-12 1-12 (33)
361 TIGR01672 AphA HAD superfamily 36.5 1.1E+02 0.0025 21.2 4.8 25 25-49 44-68 (237)
362 PRK15240 resistance to complem 36.1 34 0.00074 22.7 2.2 15 1-15 1-15 (185)
363 COG0266 Nei Formamidopyrimidin 36.1 11 0.00024 26.7 -0.2 7 53-59 267-273 (273)
364 COG3411 Ferredoxin [Energy pro 35.0 31 0.00068 18.7 1.5 30 100-134 17-46 (64)
365 PF13605 DUF4141: Domain of un 34.9 73 0.0016 16.7 3.4 16 23-38 18-33 (55)
366 PF07895 DUF1673: Protein of u 34.6 14 0.00029 25.1 0.1 11 52-62 12-22 (205)
367 COG5294 Uncharacterized protei 34.4 41 0.00088 20.4 2.0 14 1-14 1-14 (113)
368 PF08806 Sep15_SelM: Sep15/Sel 34.0 58 0.0013 18.3 2.6 33 98-132 40-75 (78)
369 PRK10144 formate-dependent nit 33.2 47 0.001 20.7 2.3 12 1-12 1-12 (126)
370 PF12771 SusD-like_2: Starch-b 33.1 14 0.00031 28.3 0.0 17 1-17 1-17 (488)
371 TIGR01287 nifH nitrogenase iro 32.1 50 0.0011 23.0 2.6 58 34-97 213-270 (275)
372 KOG4357|consensus 31.8 1.1E+02 0.0024 19.1 3.6 40 32-71 54-95 (164)
373 COG3700 AphA Acid phosphatase 31.8 1.5E+02 0.0032 20.0 4.4 23 25-47 44-66 (237)
374 PRK10397 lipoprotein; Provisio 31.6 34 0.00074 21.3 1.4 17 1-17 1-17 (137)
375 COG0278 Glutaredoxin-related p 31.5 1.2E+02 0.0026 18.2 4.9 68 34-109 7-79 (105)
376 PRK10781 rcsF outer membrane l 31.3 60 0.0013 20.5 2.5 17 1-17 1-17 (133)
377 TIGR01655 yxeA_fam conserved h 31.0 38 0.00083 20.5 1.6 12 1-12 1-12 (114)
378 COG1125 OpuBA ABC-type proline 30.9 1.4E+02 0.0029 21.6 4.4 86 38-134 149-237 (309)
379 PF07700 HNOB: Heme NO binding 30.6 1.5E+02 0.0033 19.1 4.6 43 41-85 126-168 (171)
380 COG2247 LytB Putative cell wal 30.6 1.5E+02 0.0033 21.8 4.7 64 1-67 1-74 (337)
381 COG3771 Predicted membrane pro 30.3 1.2E+02 0.0025 17.7 3.4 7 1-7 1-7 (97)
382 PF05176 ATP-synt_10: ATP10 pr 30.3 2E+02 0.0043 20.3 8.4 34 90-123 205-242 (252)
383 PRK10386 curli assembly protei 30.1 52 0.0011 20.6 2.1 17 1-17 1-17 (130)
384 PF14639 YqgF: Holliday-juncti 30.1 1.2E+02 0.0026 19.4 3.8 37 35-72 55-91 (150)
385 TIGR03511 GldH_lipo gliding mo 29.9 27 0.00058 22.6 0.9 37 1-37 4-40 (156)
386 PF14437 MafB19-deam: MafB19-l 29.8 1.1E+02 0.0024 19.6 3.5 28 42-72 99-126 (146)
387 PRK14864 putative biofilm stre 29.7 46 0.001 20.0 1.8 16 1-16 5-20 (104)
388 PRK09934 fimbrial-like adhesin 29.7 57 0.0012 21.2 2.4 14 1-14 1-14 (171)
389 PF05540 Serpulina_VSP: Serpul 29.4 44 0.00096 24.7 1.9 17 1-17 1-17 (377)
390 PRK14811 formamidopyrimidine-D 29.3 14 0.0003 26.1 -0.6 10 53-62 257-266 (269)
391 PF11948 DUF3465: Protein of u 29.0 49 0.0011 20.7 1.8 14 1-14 1-14 (131)
392 cd03058 GST_N_Tau GST_N family 29.0 99 0.0021 16.4 5.5 49 48-104 3-54 (74)
393 PRK14762 membrane protein; Pro 28.5 62 0.0013 13.9 2.1 14 1-14 1-14 (27)
394 PF11873 DUF3393: Domain of un 28.3 51 0.0011 22.4 2.0 17 1-17 1-17 (204)
395 PF02553 CbiN: Cobalt transpor 28.2 52 0.0011 18.4 1.7 12 1-12 1-12 (74)
396 cd03053 GST_N_Phi GST_N family 28.2 1E+02 0.0022 16.3 6.2 52 46-104 2-57 (76)
397 COG5567 Predicted small peripl 28.2 73 0.0016 16.7 2.1 7 1-7 1-7 (58)
398 TIGR02182 GRXB Glutaredoxin, G 28.0 1.9E+02 0.0041 19.3 6.1 49 49-104 3-51 (209)
399 cd03021 DsbA_GSTK DsbA family, 27.2 1.9E+02 0.0041 19.3 4.6 35 46-83 3-37 (209)
400 PRK10387 glutaredoxin 2; Provi 26.9 1.9E+02 0.0041 19.0 5.7 51 48-105 3-53 (210)
401 PF09363 XFP_C: XFP C-terminal 26.6 65 0.0014 21.9 2.2 27 26-52 83-109 (203)
402 PRK13697 cytochrome c6; Provis 26.4 66 0.0014 18.9 2.1 11 50-60 35-45 (111)
403 TIGR00108 eRF peptide chain re 26.4 83 0.0018 23.8 3.0 33 64-96 365-397 (409)
404 COG5645 Predicted periplasmic 26.4 40 0.00086 19.1 1.0 19 1-19 1-19 (80)
405 PRK09838 periplasmic copper-bi 26.4 72 0.0016 19.5 2.2 15 1-15 1-15 (115)
406 PRK01103 formamidopyrimidine/5 26.4 19 0.00041 25.5 -0.3 7 53-59 267-273 (274)
407 TIGR00540 hemY_coli hemY prote 26.4 67 0.0015 24.0 2.5 14 1-14 1-14 (409)
408 PRK10747 putative protoheme IX 26.3 67 0.0015 23.9 2.5 14 1-14 1-14 (398)
409 PRK13738 conjugal transfer pil 26.2 45 0.00099 22.7 1.5 23 89-111 173-196 (209)
410 PF13985 YbgS: YbgS-like prote 25.9 66 0.0014 19.7 1.9 15 1-15 1-15 (122)
411 PHA02823 chemokine binding pro 25.8 54 0.0012 22.4 1.7 17 1-17 1-17 (255)
412 PRK15272 pertussis toxin-like 25.7 11 0.00023 25.7 -1.5 36 1-41 1-36 (242)
413 PF02591 DUF164: Putative zinc 25.5 80 0.0017 16.2 2.1 30 34-63 4-34 (56)
414 PRK02935 hypothetical protein; 25.4 22 0.00048 21.3 -0.1 15 53-67 72-86 (110)
415 PRK09481 sspA stringent starva 25.1 2.1E+02 0.0046 18.9 6.8 53 45-104 10-63 (211)
416 PRK14810 formamidopyrimidine-D 24.9 21 0.00046 25.2 -0.3 6 53-58 266-271 (272)
417 PF10828 DUF2570: Protein of u 24.7 76 0.0016 19.0 2.1 18 1-18 1-18 (110)
418 PF07894 DUF1669: Protein of u 24.6 2.8E+02 0.006 20.1 6.0 64 41-111 116-186 (284)
419 PF06480 FtsH_ext: FtsH Extrac 24.3 1.3E+02 0.0028 17.2 3.1 30 23-52 23-52 (110)
420 PF03227 GILT: Gamma interfero 24.2 74 0.0016 18.9 2.0 21 46-66 3-24 (108)
421 TIGR03042 PS_II_psbQ_bact phot 24.1 1.2E+02 0.0027 19.3 3.0 10 28-37 28-37 (142)
422 PRK13945 formamidopyrimidine-D 24.0 23 0.0005 25.2 -0.3 6 53-58 276-281 (282)
423 PF12071 DUF3551: Protein of u 23.8 1E+02 0.0023 17.5 2.5 11 1-11 1-11 (82)
424 cd00307 RuBisCO_small_like Rib 23.6 1.3E+02 0.0028 17.3 2.8 33 54-86 36-71 (84)
425 PF08138 Sex_peptide: Sex pept 23.4 27 0.00059 18.1 0.0 14 1-14 1-14 (56)
426 cd03074 PDI_b'_Calsequestrin_C 23.2 1.9E+02 0.0041 17.7 8.1 88 42-132 20-119 (120)
427 COG4314 NosL Predicted lipopro 23.2 84 0.0018 20.4 2.1 15 1-15 1-15 (176)
428 PF07403 DUF1505: Protein of u 23.0 1.4E+02 0.003 18.3 2.9 17 1-17 1-17 (114)
429 PRK11009 aphA acid phosphatase 22.7 2.5E+02 0.0055 19.5 4.6 19 26-44 45-63 (237)
430 COG3417 FlgN Collagen-binding 22.7 59 0.0013 21.9 1.4 18 1-18 4-21 (200)
431 PF04900 Fcf1: Fcf1; InterPro 22.4 1.4E+02 0.0029 17.4 2.9 21 86-106 71-92 (101)
432 KOG0095|consensus 22.3 2.4E+02 0.0051 18.4 4.5 42 33-74 67-111 (213)
433 PRK15175 Vi polysaccharide exp 22.2 73 0.0016 23.7 2.0 18 1-18 1-18 (355)
434 PRK13791 lysozyme inhibitor; P 22.1 67 0.0015 19.6 1.5 11 1-11 4-14 (113)
435 PF11355 DUF3157: Protein of u 22.1 1.3E+02 0.0029 20.3 3.0 19 1-19 1-19 (199)
436 PRK09973 putative outer membra 22.1 1E+02 0.0022 17.8 2.1 12 1-12 1-12 (85)
437 PF12262 Lipase_bact_N: Bacter 22.1 68 0.0015 22.8 1.7 15 1-15 1-15 (268)
438 TIGR02949 anti_SigH_actin anti 22.1 95 0.0021 17.6 2.1 21 52-72 37-57 (84)
439 TIGR03352 VI_chp_3 type VI sec 22.0 2E+02 0.0044 18.3 3.8 12 41-52 45-56 (146)
440 cd02067 B12-binding B12 bindin 21.9 1.9E+02 0.0041 17.2 5.0 68 30-98 37-104 (119)
441 PF09776 Mitoc_L55: Mitochondr 21.8 98 0.0021 19.0 2.2 20 98-117 43-64 (116)
442 PF05404 TRAP-delta: Transloco 21.7 1.7E+02 0.0036 19.3 3.3 12 1-12 1-12 (167)
443 PRK15289 lpfA fimbrial protein 21.6 1.4E+02 0.003 19.7 3.1 8 1-8 1-8 (190)
444 PF14263 DUF4354: Domain of un 21.6 42 0.0009 20.9 0.6 19 1-19 1-19 (124)
445 PF04551 GcpE: GcpE protein; 21.4 78 0.0017 23.5 2.0 84 41-131 263-357 (359)
446 PF10614 CsgF: Type VIII secre 21.4 57 0.0012 20.8 1.1 14 1-14 1-14 (142)
447 PF06220 zf-U1: U1 zinc finger 21.4 30 0.00065 16.5 -0.1 10 52-61 4-13 (38)
448 TIGR00577 fpg formamidopyrimid 21.3 28 0.00061 24.6 -0.3 6 53-58 267-272 (272)
449 TIGR03765 ICE_PFL_4695 integra 21.3 97 0.0021 18.7 2.0 17 89-105 83-99 (105)
450 TIGR03757 conj_TIGR03757 integ 21.1 87 0.0019 19.1 1.9 14 92-105 77-90 (113)
451 PF15358 TSKS: Testis-specific 20.9 94 0.002 23.7 2.3 20 51-70 451-470 (558)
452 KOG4498|consensus 20.9 2.8E+02 0.0061 18.8 5.8 37 36-72 45-81 (197)
453 PF07511 DUF1525: Protein of u 20.8 87 0.0019 19.1 1.8 27 91-120 75-101 (114)
454 PF11072 DUF2859: Protein of u 20.7 92 0.002 19.9 2.0 16 89-104 121-136 (142)
455 PF06827 zf-FPG_IleRS: Zinc fi 20.7 20 0.00044 15.8 -0.7 9 51-59 21-29 (30)
456 COG3495 Uncharacterized protei 20.6 95 0.0021 19.8 2.0 13 1-13 1-13 (166)
457 PRK10445 endonuclease VIII; Pr 20.5 30 0.00065 24.4 -0.2 6 53-58 257-262 (263)
458 CHL00132 psaF photosystem I su 20.5 1E+02 0.0022 20.5 2.1 19 1-19 1-19 (185)
459 COG5455 Predicted integral mem 20.3 1E+02 0.0022 19.3 2.0 15 1-15 2-16 (129)
460 TIGR03780 Bac_Flav_CT_N Bacter 20.3 87 0.0019 22.5 2.0 14 1-14 1-15 (285)
461 TIGR01165 cbiN cobalt transpor 20.1 1.1E+02 0.0024 17.8 2.1 20 53-72 59-78 (91)
No 1
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.93 E-value=9e-25 Score=146.76 Aligned_cols=131 Identities=27% Similarity=0.568 Sum_probs=108.7
Q ss_pred CchHHHHHHHHHHHHhhccCC-----CCCCcEEEeChhhHHHhhhc-----CCcEEEEEECCCChhhhhhhHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPLVVFADDV-----TEEDGVLVLTQDNFQSSIEK-----HDHILVEFYAPWCGHCKQLVPEYSKAALQ 70 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----~~~~vv~f~~~~C~~C~~~~~~~~~~~~~ 70 (142)
||++++++++++.+.+..... .....+..+++++|++.++. +++++|+||++||++|+.+.|.+.++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~ 80 (224)
T PTZ00443 1 MKFIILACCILFGLIADEATNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKA 80 (224)
T ss_pred CchhHHHHHHHHHHHccccccccccccCCCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHH
Confidence 888777766666655543321 22456889999999997753 58999999999999999999999999999
Q ss_pred HhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEee-CcccccccccccchHHhhccce
Q psy7943 71 LATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY-GEVTSVEYCYQRNWHKRAVTSV 136 (142)
Q Consensus 71 ~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~-~g~~~~~~l~~~~~~~~~~~~~ 136 (142)
++ ..+.++.+|++++..++++|+|+++||+++|++|..+.+ .|..+.+++ .+|+.+...+.
T Consensus 81 ~~---~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L--~~fi~~~~~~~ 142 (224)
T PTZ00443 81 LK---GQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKL--AAFALGDFKKA 142 (224)
T ss_pred cC---CCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHH--HHHHHHHHHhh
Confidence 87 468899999999999999999999999999999887774 677899999 99988876543
No 2
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=6.6e-25 Score=133.36 Aligned_cols=103 Identities=17% Similarity=0.332 Sum_probs=91.7
Q ss_pred CCCCCcEEEeChhhHHHh---hhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHH-HHcC
Q psy7943 21 VTEEDGVLVLTQDNFQSS---IEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALA-EQYG 96 (142)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~---~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~ 96 (142)
+.+...+..+++++|+++ .+++++++|.||++||++|+.+.|.+.++++.++ ..+.++.+|++++..++ ++|+
T Consensus 5 ~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~---~~v~~~~Vd~d~~~~l~~~~~~ 81 (113)
T cd03006 5 FSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS---DQVLFVAINCWWPQGKCRKQKH 81 (113)
T ss_pred cCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc---CCeEEEEEECCCChHHHHHhcC
Confidence 345567899999999987 5789999999999999999999999999999987 46899999999999998 5899
Q ss_pred CCCCCEEEEEeCCc-eEeeCcccccccccccch
Q psy7943 97 VRGYPTLKFFKKRS-IIEYGEVTSVEYCYQRNW 128 (142)
Q Consensus 97 i~~~P~~~i~~~~~-~~~~~g~~~~~~l~~~~~ 128 (142)
|.++||+.+|++|+ ..+|.|..+.++| ..|
T Consensus 82 I~~~PTl~lf~~g~~~~~y~G~~~~~~i--~~~ 112 (113)
T cd03006 82 FFYFPVIHLYYRSRGPIEYKGPMRAPYM--EKF 112 (113)
T ss_pred CcccCEEEEEECCccceEEeCCCCHHHH--Hhh
Confidence 99999999999887 4569999999988 765
No 3
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=1.3e-24 Score=130.25 Aligned_cols=98 Identities=24% Similarity=0.504 Sum_probs=88.7
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEE
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i 105 (142)
.+..++.++|++.+.++++++|+||++||++|+.+.|.+.++++.++ ..+.++.+|++++..++++++++++||+++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD---GVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc---CceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 46788899999999889999999999999999999999999999987 468999999999999999999999999999
Q ss_pred EeCCceE-eeCcccccccccccch
Q psy7943 106 FKKRSII-EYGEVTSVEYCYQRNW 128 (142)
Q Consensus 106 ~~~~~~~-~~~g~~~~~~l~~~~~ 128 (142)
|++|... ++.|..+.++| .+|
T Consensus 79 ~~~g~~~~~~~G~~~~~~l--~~f 100 (101)
T cd03003 79 FPSGMNPEKYYGDRSKESL--VKF 100 (101)
T ss_pred EcCCCCcccCCCCCCHHHH--Hhh
Confidence 9988754 48999888888 655
No 4
>PTZ00102 disulphide isomerase; Provisional
Probab=99.92 E-value=3.2e-24 Score=159.31 Aligned_cols=114 Identities=43% Similarity=0.800 Sum_probs=105.1
Q ss_pred CcEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEE
Q psy7943 25 DGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104 (142)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~ 104 (142)
..+..++.++|+..+++++.++|.||++||++|+++.|.+.++++.+.....++.++.+|++++..++++|+++++||++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 56889999999999999999999999999999999999999999888766568999999999999999999999999999
Q ss_pred EEeCCceEeeCcccccccccccchHHhhccceeeec
Q psy7943 105 FFKKRSIIEYGEVTSVEYCYQRNWHKRAVTSVIIRK 140 (142)
Q Consensus 105 i~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 140 (142)
+|++|+.+.|.|.++.+++ .+|+.+.+++.+...
T Consensus 112 ~~~~g~~~~y~g~~~~~~l--~~~l~~~~~~~~~~i 145 (477)
T PTZ00102 112 FFNKGNPVNYSGGRTADGI--VSWIKKLTGPAVTEV 145 (477)
T ss_pred EEECCceEEecCCCCHHHH--HHHHHHhhCCCceee
Confidence 9999998799999999999 999999988766543
No 5
>KOG0910|consensus
Probab=99.92 E-value=6.4e-25 Score=136.42 Aligned_cols=104 Identities=31% Similarity=0.504 Sum_probs=94.8
Q ss_pred cEEEeChhhHHH-hhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEE
Q psy7943 26 GVLVLTQDNFQS-SIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104 (142)
Q Consensus 26 ~~~~~~~~~~~~-~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~ 104 (142)
.+...+..+|++ .++++.+++|+|||+||+||+.+.|.++++...+. +.+.++.+|.+++.++..+|+|..+||++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~---g~~k~~kvdtD~~~ela~~Y~I~avPtvl 120 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYA---GKFKLYKVDTDEHPELAEDYEISAVPTVL 120 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhc---CeEEEEEEccccccchHhhcceeeeeEEE
Confidence 345567778888 56789999999999999999999999999999997 68999999999999999999999999999
Q ss_pred EEeCCceEe-eCcccccccccccchHHhhcc
Q psy7943 105 FFKKRSIIE-YGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 105 i~~~~~~~~-~~g~~~~~~l~~~~~~~~~~~ 134 (142)
+|++|.... +.|..+.+.+ ..++++.+.
T Consensus 121 vfknGe~~d~~vG~~~~~~l--~~~i~k~l~ 149 (150)
T KOG0910|consen 121 VFKNGEKVDRFVGAVPKEQL--RSLIKKFLK 149 (150)
T ss_pred EEECCEEeeeecccCCHHHH--HHHHHHHhc
Confidence 999999775 8999999999 999998864
No 6
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.91 E-value=7e-24 Score=127.18 Aligned_cols=100 Identities=34% Similarity=0.673 Sum_probs=93.1
Q ss_pred EEeChhhHHHhhhc-CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEE
Q psy7943 28 LVLTQDNFQSSIEK-HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFF 106 (142)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~ 106 (142)
..+++++|++.+.+ +++++|+||++||++|+.+.|.+.++++.+.+ ++.++.+|++++..++++|+++++|++++|
T Consensus 2 ~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 2 IVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp EEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred EECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 56789999998876 99999999999999999999999999999984 899999999999999999999999999999
Q ss_pred eCCceE-eeCcccccccccccchHHhh
Q psy7943 107 KKRSII-EYGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 107 ~~~~~~-~~~g~~~~~~l~~~~~~~~~ 132 (142)
++|+.. ++.|..+.++| .+|++++
T Consensus 79 ~~g~~~~~~~g~~~~~~l--~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVKRYNGPRNAESL--IEFIEKH 103 (103)
T ss_dssp ETTEEEEEEESSSSHHHH--HHHHHHH
T ss_pred ECCcEEEEEECCCCHHHH--HHHHHcC
Confidence 999966 49999999999 9999874
No 7
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.91 E-value=7.9e-24 Score=128.33 Aligned_cols=102 Identities=29% Similarity=0.590 Sum_probs=90.1
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcC---CCceEEEEeeccccHHHHHHcCCCCCCE
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATD---GHDIKLAKVDATQHTALAEQYGVRGYPT 102 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~~~~vd~~~~~~~~~~~~i~~~P~ 102 (142)
++..+++++|++.++++++++|+||++||++|+++.|.+.++++.++.. ...+.++.+|++++..++++|+++++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 4678899999999989999999999999999999999999999887532 1359999999999999999999999999
Q ss_pred EEEEeCCc-e-EeeCcccccccccccchH
Q psy7943 103 LKFFKKRS-I-IEYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 103 ~~i~~~~~-~-~~~~g~~~~~~l~~~~~~ 129 (142)
+++|++|+ . ..|.|..+.++| .+|+
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l--~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEAL--AEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHH--HhhC
Confidence 99999987 3 458899999988 7764
No 8
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.91 E-value=1.6e-23 Score=128.14 Aligned_cols=110 Identities=17% Similarity=0.214 Sum_probs=95.1
Q ss_pred CCCCCcEEEeChhhHHHhhh-cCCcEEEEEECCCChh--hh--hhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHc
Q psy7943 21 VTEEDGVLVLTQDNFQSSIE-KHDHILVEFYAPWCGH--CK--QLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQY 95 (142)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~-~~~~~vv~f~~~~C~~--C~--~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~ 95 (142)
+.....+..+++++|++.+. ++.+++++||++||++ |+ ++.|.+.+.+.++-. ..++.++++|++++.+++++|
T Consensus 5 ~~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~-~~~v~~~kVD~d~~~~La~~~ 83 (120)
T cd03065 5 YDGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE-DKGIGFGLVDSKKDAKVAKKL 83 (120)
T ss_pred cCCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh-cCCCEEEEEeCCCCHHHHHHc
Confidence 34455788899999999775 4668888888999987 99 889999999988721 147999999999999999999
Q ss_pred CCCCCCEEEEEeCCceEeeCcccccccccccchHHhhc
Q psy7943 96 GVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 96 ~i~~~P~~~i~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 133 (142)
+|.++||+++|++|+.+.+.|.++.+.+ ..|+.+.+
T Consensus 84 ~I~~iPTl~lfk~G~~v~~~G~~~~~~l--~~~l~~~~ 119 (120)
T cd03065 84 GLDEEDSIYVFKDDEVIEYDGEFAADTL--VEFLLDLI 119 (120)
T ss_pred CCccccEEEEEECCEEEEeeCCCCHHHH--HHHHHHHh
Confidence 9999999999999998889999999999 99998764
No 9
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.90 E-value=3.1e-23 Score=125.23 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=79.9
Q ss_pred hhhHHHhhh--cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCC
Q psy7943 32 QDNFQSSIE--KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKR 109 (142)
Q Consensus 32 ~~~~~~~~~--~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~ 109 (142)
.++|+..+. ++++++|+||++||++|+.+.|.+.++++.+. ..+.|+.+|.++++++.++|+|.++||+++|++|
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~---~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS---NFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc---CceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 467788775 58899999999999999999999999999987 4578999999999999999999999999999999
Q ss_pred ceEe-eCcccccccc
Q psy7943 110 SIIE-YGEVTSVEYC 123 (142)
Q Consensus 110 ~~~~-~~g~~~~~~l 123 (142)
+.+. ..|..+.+.+
T Consensus 79 ~~v~~~~G~~~~~~~ 93 (114)
T cd02954 79 KHMKIDLGTGNNNKI 93 (114)
T ss_pred EEEEEEcCCCCCceE
Confidence 9776 6788877777
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.90 E-value=3.2e-23 Score=124.79 Aligned_cols=99 Identities=32% Similarity=0.672 Sum_probs=86.8
Q ss_pred cEEEeChhhHHHhh-hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEE
Q psy7943 26 GVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104 (142)
Q Consensus 26 ~~~~~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~ 104 (142)
.+..++.++|++.+ +++++++|+||++||++|+.+.|.+.++++.+. ..+.++.+|++++..++++|+++++||++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALK---GKVKVGSVDCQKYESLCQQANIRAYPTIR 78 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEECCchHHHHHHcCCCcccEEE
Confidence 35678889999975 457899999999999999999999999999886 46899999999999999999999999999
Q ss_pred EEeCC-c-eEeeCcccc-cccccccchH
Q psy7943 105 FFKKR-S-IIEYGEVTS-VEYCYQRNWH 129 (142)
Q Consensus 105 i~~~~-~-~~~~~g~~~-~~~l~~~~~~ 129 (142)
+|++| + ..+|.|..+ .++| ..|+
T Consensus 79 ~~~~g~~~~~~~~G~~~~~~~l--~~~i 104 (104)
T cd03004 79 LYPGNASKYHSYNGWHRDADSI--LEFI 104 (104)
T ss_pred EEcCCCCCceEccCCCCCHHHH--HhhC
Confidence 99998 4 445899887 8888 7664
No 11
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.90 E-value=4.9e-23 Score=123.39 Aligned_cols=100 Identities=32% Similarity=0.508 Sum_probs=87.7
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEE
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i 105 (142)
.+..+++++|++.++ ++ ++|+||++||++|+.+.|.+.++++.+++ .++.++.+|++++..++++|+++++||+++
T Consensus 2 ~v~~l~~~~f~~~~~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVLE-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHhC-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 467889999998774 44 78999999999999999999999987652 468999999999999999999999999999
Q ss_pred EeCCceEeeCcccccccccccchHHh
Q psy7943 106 FKKRSIIEYGEVTSVEYCYQRNWHKR 131 (142)
Q Consensus 106 ~~~~~~~~~~g~~~~~~l~~~~~~~~ 131 (142)
+++|...++.|..+.++| ..|+++
T Consensus 78 ~~~g~~~~~~G~~~~~~l--~~~i~~ 101 (101)
T cd02994 78 AKDGVFRRYQGPRDKEDL--ISFIEE 101 (101)
T ss_pred eCCCCEEEecCCCCHHHH--HHHHhC
Confidence 988877669999999999 888753
No 12
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.90 E-value=1.9e-22 Score=128.29 Aligned_cols=107 Identities=20% Similarity=0.412 Sum_probs=87.6
Q ss_pred HHHHHHHHhhccCCCCCCcEEEeChhhHHHhhh--cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeec
Q psy7943 8 FLLISPLVVFADDVTEEDGVLVLTQDNFQSSIE--KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85 (142)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~ 85 (142)
++++..+.+....+..+..+..+++++|++.+. ++++++|+||++||++|+.+.|.+.++++.+.+ .++.++.+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDv 88 (152)
T cd02962 11 LCIVVYLLAPQPLYMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDI 88 (152)
T ss_pred HHHHHHHHhCCCccCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEEC
Confidence 333333333334455667889999999999774 357899999999999999999999999998863 3699999999
Q ss_pred cccHHHHHHcCCCC------CCEEEEEeCCceEe-eCc
Q psy7943 86 TQHTALAEQYGVRG------YPTLKFFKKRSIIE-YGE 116 (142)
Q Consensus 86 ~~~~~~~~~~~i~~------~P~~~i~~~~~~~~-~~g 116 (142)
+++.+++++|++++ +||+++|++|+.+. +.|
T Consensus 89 d~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 89 GRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEEec
Confidence 99999999999988 99999999998665 555
No 13
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.90 E-value=8e-23 Score=122.52 Aligned_cols=100 Identities=40% Similarity=0.814 Sum_probs=88.2
Q ss_pred EEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEE
Q psy7943 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFF 106 (142)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~ 106 (142)
+..+++++|+..+.++ .++|+||++||++|+.+.|.+.++++.+.+....+.++.+|++++..++++|++.++|++++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 5678889999998766 599999999999999999999999999985334799999999999999999999999999999
Q ss_pred eCCceE-eeCcccccccccccchH
Q psy7943 107 KKRSII-EYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 107 ~~~~~~-~~~g~~~~~~l~~~~~~ 129 (142)
++|+.. ++.|..+.+++ .+|+
T Consensus 81 ~~g~~~~~~~G~~~~~~l--~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSL--KEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHH--HhhC
Confidence 988855 48999998888 7664
No 14
>PHA02278 thioredoxin-like protein
Probab=99.90 E-value=5.4e-23 Score=123.07 Aligned_cols=89 Identities=11% Similarity=0.214 Sum_probs=76.2
Q ss_pred hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc----HHHHHHcCCCCCCEEEEEe
Q psy7943 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH----TALAEQYGVRGYPTLKFFK 107 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~i~~~P~~~i~~ 107 (142)
.++|.+.++++++++|+|||+||++|+.+.|.+.++++.+. ....++.+|++++ .++.++|+|.++||+++|+
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~---~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGD---IKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc---CCceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 46788888899999999999999999999999999987754 2455777777765 6899999999999999999
Q ss_pred CCceEe-eCcccccccc
Q psy7943 108 KRSIIE-YGEVTSVEYC 123 (142)
Q Consensus 108 ~~~~~~-~~g~~~~~~l 123 (142)
+|+.+. ..|..+.+.+
T Consensus 81 ~G~~v~~~~G~~~~~~l 97 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQL 97 (103)
T ss_pred CCEEEEEEeCCCCHHHH
Confidence 998776 7787777777
No 15
>PRK10996 thioredoxin 2; Provisional
Probab=99.89 E-value=2.1e-22 Score=127.05 Aligned_cols=102 Identities=21% Similarity=0.581 Sum_probs=92.7
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEE
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i 105 (142)
.+...+.++|+..++++++++|+||++||++|+.+.+.+.++++.+. .++.++.+|++++.++.++|+++++|++++
T Consensus 36 ~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~---~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 36 EVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS---GKVRFVKVNTEAERELSARFRIRSIPTIMI 112 (139)
T ss_pred CCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC---CCeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence 45668889999999999999999999999999999999999998776 479999999999999999999999999999
Q ss_pred EeCCceEe-eCcccccccccccchHHhh
Q psy7943 106 FKKRSIIE-YGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 106 ~~~~~~~~-~~g~~~~~~l~~~~~~~~~ 132 (142)
|++|+.+. +.|..+.+.+ .+|++++
T Consensus 113 ~~~G~~v~~~~G~~~~e~l--~~~l~~~ 138 (139)
T PRK10996 113 FKNGQVVDMLNGAVPKAPF--DSWLNEA 138 (139)
T ss_pred EECCEEEEEEcCCCCHHHH--HHHHHHh
Confidence 99888666 7899999999 9999875
No 16
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9.1e-23 Score=139.20 Aligned_cols=107 Identities=31% Similarity=0.612 Sum_probs=98.7
Q ss_pred CCcEEEeChhhHHHhh--hc-CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCC
Q psy7943 24 EDGVLVLTQDNFQSSI--EK-HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGY 100 (142)
Q Consensus 24 ~~~~~~~~~~~~~~~~--~~-~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~ 100 (142)
...+..+++.||+..+ .+ .++++|+||+|||++|+.+.|.++++...++ +.+..++|||++++.+..+|||+++
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~---G~f~LakvN~D~~p~vAaqfgiqsI 98 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK---GKFKLAKVNCDAEPMVAAQFGVQSI 98 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC---CceEEEEecCCcchhHHHHhCcCcC
Confidence 3458899999999955 23 5699999999999999999999999999998 6899999999999999999999999
Q ss_pred CEEEEEeCCceEe-eCcccccccccccchHHhhccc
Q psy7943 101 PTLKFFKKRSIIE-YGEVTSVEYCYQRNWHKRAVTS 135 (142)
Q Consensus 101 P~~~i~~~~~~~~-~~g~~~~~~l~~~~~~~~~~~~ 135 (142)
|+++.|.+|+++. +.|..+++.+ +.|+.+++++
T Consensus 99 PtV~af~dGqpVdgF~G~qPesql--r~~ld~~~~~ 132 (304)
T COG3118 99 PTVYAFKDGQPVDGFQGAQPESQL--RQFLDKVLPA 132 (304)
T ss_pred CeEEEeeCCcCccccCCCCcHHHH--HHHHHHhcCh
Confidence 9999999999888 9999999999 9999999876
No 17
>KOG0190|consensus
Probab=99.89 E-value=9.3e-23 Score=148.57 Aligned_cols=117 Identities=48% Similarity=0.855 Sum_probs=109.6
Q ss_pred CCCCcEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCC
Q psy7943 22 TEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYP 101 (142)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P 101 (142)
.....+..++.++|...+..+..++|.||||||++|+++.|.+.+.+..+...+..+..++||++++..++.+|+++++|
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 45678999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred EEEEEeCCce-EeeCcccccccccccchHHhhccceeeec
Q psy7943 102 TLKFFKKRSI-IEYGEVTSVEYCYQRNWHKRAVTSVIIRK 140 (142)
Q Consensus 102 ~~~i~~~~~~-~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 140 (142)
|+.+|++|.. ..|.|+++.+++ ..|+.+..++.+..-
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgI--v~wl~kq~gPa~~~l 139 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGI--VKWLKKQSGPASKTL 139 (493)
T ss_pred eEEEEecCCcceeccCcccHHHH--HHHHHhccCCCceec
Confidence 9999999995 789999999999 999999988876543
No 18
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.89 E-value=2.7e-22 Score=120.38 Aligned_cols=97 Identities=19% Similarity=0.384 Sum_probs=82.7
Q ss_pred eChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCC
Q psy7943 30 LTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKR 109 (142)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~ 109 (142)
.+.++|+..++++++++|+||++||++|+.+.|.+.+++..+.+ ..+.+..+|.+ +.++.++|+++++||+++|++|
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 46788999999999999999999999999999999999888863 35788889988 7788999999999999999998
Q ss_pred ceEeeCcccccccccccchHHh
Q psy7943 110 SIIEYGEVTSVEYCYQRNWHKR 131 (142)
Q Consensus 110 ~~~~~~g~~~~~~l~~~~~~~~ 131 (142)
+.+....+.+.+.+ .+++++
T Consensus 82 ~~~~~~~G~~~~~~--~~~i~~ 101 (102)
T cd02948 82 ELVAVIRGANAPLL--NKTITE 101 (102)
T ss_pred EEEEEEecCChHHH--HHHHhh
Confidence 87764333577888 777754
No 19
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.89 E-value=2.6e-22 Score=120.15 Aligned_cols=100 Identities=47% Similarity=0.838 Sum_probs=90.5
Q ss_pred eChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCC
Q psy7943 30 LTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKR 109 (142)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~ 109 (142)
+++++|+..+.++++++|+||++||++|+.+.+.+.++++.+.+. .++.++.+|++++..++++|+++++|++++|++|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 357889998889999999999999999999999999999988743 2799999999999999999999999999999999
Q ss_pred c-eEeeCcccccccccccchHHhh
Q psy7943 110 S-IIEYGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 110 ~-~~~~~g~~~~~~l~~~~~~~~~ 132 (142)
+ ...+.|..+.+++ ..|+.+.
T Consensus 80 ~~~~~~~g~~~~~~l--~~~i~~~ 101 (102)
T TIGR01126 80 KKPVDYEGGRDLEAI--VEFVNEK 101 (102)
T ss_pred CcceeecCCCCHHHH--HHHHHhc
Confidence 8 6679999999999 9998775
No 20
>PRK09381 trxA thioredoxin; Provisional
Probab=99.89 E-value=4.9e-22 Score=120.62 Aligned_cols=104 Identities=30% Similarity=0.590 Sum_probs=92.0
Q ss_pred CcEEEeChhhHHHh-hhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEE
Q psy7943 25 DGVLVLTQDNFQSS-IEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTL 103 (142)
Q Consensus 25 ~~~~~~~~~~~~~~-~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~ 103 (142)
..+..+++++|++. .+.+++++|+||++||++|+.+.|.+.++++.+. ..+.++.+|++....++++|+++++|++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ---GKLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC---CCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 45677888899874 5668999999999999999999999999999887 4689999999999999999999999999
Q ss_pred EEEeCCceEe-eCcccccccccccchHHhhc
Q psy7943 104 KFFKKRSIIE-YGEVTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 104 ~i~~~~~~~~-~~g~~~~~~l~~~~~~~~~~ 133 (142)
++|++|+... +.|..+.+.+ ..++.+.+
T Consensus 80 ~~~~~G~~~~~~~G~~~~~~l--~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGEVAATKVGALSKGQL--KEFLDANL 108 (109)
T ss_pred EEEeCCeEEEEecCCCCHHHH--HHHHHHhc
Confidence 9999888654 7888889999 99888765
No 21
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.89 E-value=4.6e-22 Score=119.57 Aligned_cols=100 Identities=42% Similarity=0.829 Sum_probs=88.1
Q ss_pred EEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc--cHHHHHHcCCCCCCEEE
Q psy7943 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ--HTALAEQYGVRGYPTLK 104 (142)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~P~~~ 104 (142)
+..+++.+|+..++++++++|+||++||++|+++.|.+.++++.+.. ...+.++.+|+++ +..++++++++++|+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 56678889999999999999999999999999999999999988864 2468899999998 89999999999999999
Q ss_pred EEeCCceE-eeCcccccccccccchH
Q psy7943 105 FFKKRSII-EYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 105 i~~~~~~~-~~~g~~~~~~l~~~~~~ 129 (142)
++++|+.. .+.|..+.+++ .+|+
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l--~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDI--IEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHH--HhhC
Confidence 99998844 48999988888 7664
No 22
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.88 E-value=3.6e-22 Score=121.56 Aligned_cols=99 Identities=15% Similarity=0.320 Sum_probs=85.7
Q ss_pred EeChhhHHH-hh--hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEE
Q psy7943 29 VLTQDNFQS-SI--EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 29 ~~~~~~~~~-~~--~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i 105 (142)
.++.++|.+ ++ ..+++++|+||++||++|+.+.|.+.++++.+++ .++.++.+|++++..+++++++.++||+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP--LGVGIATVNAGHERRLARKLGAHSVPAIVG 85 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh--cCceEEEEeccccHHHHHHcCCccCCEEEE
Confidence 346677775 33 3689999999999999999999999999999974 268899999999999999999999999999
Q ss_pred EeCCceEe-eCcccccccccccchHHh
Q psy7943 106 FKKRSIIE-YGEVTSVEYCYQRNWHKR 131 (142)
Q Consensus 106 ~~~~~~~~-~~g~~~~~~l~~~~~~~~ 131 (142)
|++|+... +.|..+.+.+ .+|+.+
T Consensus 86 ~~~g~~~~~~~G~~~~~~l--~~~i~~ 110 (111)
T cd02963 86 IINGQVTFYHDSSFTKQHV--VDFVRK 110 (111)
T ss_pred EECCEEEEEecCCCCHHHH--HHHHhc
Confidence 99888665 6888899999 888865
No 23
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.88 E-value=3.6e-22 Score=120.27 Aligned_cols=98 Identities=37% Similarity=0.776 Sum_probs=86.0
Q ss_pred hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCce
Q psy7943 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSI 111 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~ 111 (142)
+++|+.. .++++++|+||++||++|+++.|.+.++++.+++.+..+.+..+|+++...++++|++.++|++++|++|..
T Consensus 6 ~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~ 84 (104)
T cd03000 6 DDSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA 84 (104)
T ss_pred hhhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc
Confidence 3667774 457899999999999999999999999999987554579999999999999999999999999999987767
Q ss_pred EeeCcccccccccccchHHhh
Q psy7943 112 IEYGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 112 ~~~~g~~~~~~l~~~~~~~~~ 132 (142)
..+.|..+.+.+ ..|+.+.
T Consensus 85 ~~~~G~~~~~~l--~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRTKDDI--VEFANRV 103 (104)
T ss_pred eeecCCCCHHHH--HHHHHhh
Confidence 679999999999 8888764
No 24
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.88 E-value=3.5e-22 Score=118.59 Aligned_cols=91 Identities=27% Similarity=0.477 Sum_probs=80.0
Q ss_pred hHHHhh-hc-CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCce
Q psy7943 34 NFQSSI-EK-HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSI 111 (142)
Q Consensus 34 ~~~~~~-~~-~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~ 111 (142)
+|++.+ ++ +++++|+||++||++|+.+.|.+.+++..+. ..+.++.+|++++.+++++|++.++|++++|++|+.
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ---GQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC---CcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 466655 33 7899999999999999999999999999886 368899999999999999999999999999998876
Q ss_pred Ee-eCcccccccccccchH
Q psy7943 112 IE-YGEVTSVEYCYQRNWH 129 (142)
Q Consensus 112 ~~-~~g~~~~~~l~~~~~~ 129 (142)
.. +.|..+.+++ ..|+
T Consensus 79 ~~~~~g~~~~~~l--~~~l 95 (96)
T cd02956 79 VDGFQGAQPEEQL--RQML 95 (96)
T ss_pred eeeecCCCCHHHH--HHHh
Confidence 54 8898888888 7776
No 25
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.88 E-value=1.7e-22 Score=120.79 Aligned_cols=84 Identities=21% Similarity=0.537 Sum_probs=75.7
Q ss_pred hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-ccHHHHHHcCCCCCCEEEEEeCCceEeeCccc
Q psy7943 40 EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-QHTALAEQYGVRGYPTLKFFKKRSIIEYGEVT 118 (142)
Q Consensus 40 ~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~ 118 (142)
.++++++|+||++||++|+.+.|.+.++++.++ ++.++.+|.+ ++..++++|+++++||+++|++|...++.|..
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~----~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~ 91 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP----QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTR 91 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc----cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCC
Confidence 479999999999999999999999999999886 4678889998 78899999999999999999998666699999
Q ss_pred ccccccccchH
Q psy7943 119 SVEYCYQRNWH 129 (142)
Q Consensus 119 ~~~~l~~~~~~ 129 (142)
+.+++ .+|+
T Consensus 92 ~~~~l--~~f~ 100 (100)
T cd02999 92 TLDSL--AAFY 100 (100)
T ss_pred CHHHH--HhhC
Confidence 99888 7764
No 26
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.88 E-value=6e-22 Score=120.12 Aligned_cols=98 Identities=42% Similarity=0.784 Sum_probs=86.1
Q ss_pred EEEeChhhHHHhhh-cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc--cHHHHHHcCCCCCCEE
Q psy7943 27 VLVLTQDNFQSSIE-KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ--HTALAEQYGVRGYPTL 103 (142)
Q Consensus 27 ~~~~~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~P~~ 103 (142)
+..+++++|++.+. ++++++|+||++||++|+.+.|.+.++++.+. ..+.++.+|++. +..++++|+++++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~---~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~ 78 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD---GLVQVAAVDCDEDKNKPLCGKYGVQGFPTL 78 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhc---CCceEEEEecCccccHHHHHHcCCCcCCEE
Confidence 56788999999765 57779999999999999999999999999887 457888889888 8899999999999999
Q ss_pred EEEeCCc------eEeeCcccccccccccchH
Q psy7943 104 KFFKKRS------IIEYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 104 ~i~~~~~------~~~~~g~~~~~~l~~~~~~ 129 (142)
++|++|+ ...|.|..+.+++ .+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l--~~fi 108 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAI--VDFV 108 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHH--HHHh
Confidence 9999996 3458899999999 8876
No 27
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.87 E-value=8.7e-22 Score=118.36 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=75.8
Q ss_pred ChhhHHHhhhc--CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH---HHHHHcCCCCCCEEEE
Q psy7943 31 TQDNFQSSIEK--HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT---ALAEQYGVRGYPTLKF 105 (142)
Q Consensus 31 ~~~~~~~~~~~--~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~i~~~P~~~i 105 (142)
+.++|++.+.+ +++++|+||++||++|+.+.|.+.++++.+. .+.++.+|.+++. .++++|+++++||+++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN----DVVFLLVNGDENDSTMELCRREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence 35678887753 8999999999999999999999999998883 6789999998774 7999999999999999
Q ss_pred EeCCceEe-eCcccccccccccchH
Q psy7943 106 FKKRSIIE-YGEVTSVEYCYQRNWH 129 (142)
Q Consensus 106 ~~~~~~~~-~~g~~~~~~l~~~~~~ 129 (142)
|++|+.+. +.| ..++++ .+.+
T Consensus 78 ~~~G~~v~~~~G-~~~~~l--~~~~ 99 (103)
T cd02985 78 YKDGEKIHEEEG-IGPDEL--IGDV 99 (103)
T ss_pred EeCCeEEEEEeC-CCHHHH--HHHH
Confidence 99888665 666 445555 4444
No 28
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.87 E-value=1.6e-21 Score=116.99 Aligned_cols=98 Identities=45% Similarity=0.760 Sum_probs=86.9
Q ss_pred EEEeChhhHHHhhhc-CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEE
Q psy7943 27 VLVLTQDNFQSSIEK-HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i 105 (142)
+..+++++++..+.+ +++++|+||++||++|+.+.|.+.++++.+. ..+.++.+|++++.+++++|+++++|++++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~---~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALK---GIVKVGAVDADVHQSLAQQYGVRGFPTIKV 78 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc---CCceEEEEECcchHHHHHHCCCCccCEEEE
Confidence 567888999997754 5669999999999999999999999998887 468999999999999999999999999999
Q ss_pred EeCCc--eEeeCcccccccccccchH
Q psy7943 106 FKKRS--IIEYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 106 ~~~~~--~~~~~g~~~~~~l~~~~~~ 129 (142)
|++|. ...|.|..+.+++ .+|+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~l--~~~~ 102 (103)
T cd03001 79 FGAGKNSPQDYQGGRTAKAI--VSAA 102 (103)
T ss_pred ECCCCcceeecCCCCCHHHH--HHHh
Confidence 99883 5569999999999 8876
No 29
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.86 E-value=3.4e-21 Score=116.90 Aligned_cols=100 Identities=28% Similarity=0.569 Sum_probs=84.7
Q ss_pred cEEEeChhhHHHhh---hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc-cHHHHH-HcCCCCC
Q psy7943 26 GVLVLTQDNFQSSI---EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-HTALAE-QYGVRGY 100 (142)
Q Consensus 26 ~~~~~~~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~-~~~i~~~ 100 (142)
.+..++.++|+... +++++++|.||++||++|+.+.|.+.++++.+++ .++.++.+|++. +..++. .++++++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~d~~~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNADGEQREFAKEELQLKSF 79 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEECCccchhhHHhhcCCCcC
Confidence 36778889999876 3689999999999999999999999999998873 368999999997 577776 5999999
Q ss_pred CEEEEEeCCc--eEeeCcc-cccccccccchH
Q psy7943 101 PTLKFFKKRS--IIEYGEV-TSVEYCYQRNWH 129 (142)
Q Consensus 101 P~~~i~~~~~--~~~~~g~-~~~~~l~~~~~~ 129 (142)
||+++|++|+ ...|.|. ++.++| ..|+
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l--~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSL--LMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHH--HhhC
Confidence 9999998876 5568885 788888 7764
No 30
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.86 E-value=7.3e-21 Score=114.40 Aligned_cols=100 Identities=47% Similarity=0.853 Sum_probs=86.6
Q ss_pred EEEeChhhHHHhhhc-CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc-cHHHHHHcCCCCCCEEE
Q psy7943 27 VLVLTQDNFQSSIEK-HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-HTALAEQYGVRGYPTLK 104 (142)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i~~~P~~~ 104 (142)
+..++++++++.+++ +++++|+||++||++|+.+.|.+.++++.+.. ...+.++.+|+++ +..++++|++.++|+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 467788899998764 55899999999999999999999999998872 2479999999999 89999999999999999
Q ss_pred EEeCCc--eEeeCcccccccccccchH
Q psy7943 105 FFKKRS--IIEYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 105 i~~~~~--~~~~~g~~~~~~l~~~~~~ 129 (142)
+|++|+ ...+.|..+.+++ .+|+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~l--~~~i 105 (105)
T cd02998 81 FFPKGSTEPVKYEGGRDLEDL--VKFV 105 (105)
T ss_pred EEeCCCCCccccCCccCHHHH--HhhC
Confidence 999885 4448898888888 7764
No 31
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.86 E-value=7.3e-21 Score=140.66 Aligned_cols=112 Identities=49% Similarity=0.851 Sum_probs=102.0
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEE
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i 105 (142)
.+..+++++|+.+++++++++|.||++||++|+.+.|.+.++++.+...+.++.++.+||+++.+++++|++.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 46778899999999999999999999999999999999999999887665679999999999999999999999999999
Q ss_pred EeCCce--EeeCcccccccccccchHHhhccceeee
Q psy7943 106 FKKRSI--IEYGEVTSVEYCYQRNWHKRAVTSVIIR 139 (142)
Q Consensus 106 ~~~~~~--~~~~g~~~~~~l~~~~~~~~~~~~~~~~ 139 (142)
|++|+. ..|.|..+.+.+ .+|+.+.+++....
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l--~~~i~~~~~~~~~~ 115 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGI--VKYMKKQSGPAVKE 115 (462)
T ss_pred EeCCccceeEecCCCCHHHH--HHHHHHhcCCCcee
Confidence 999886 669999999999 99999998766543
No 32
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.85 E-value=7.6e-21 Score=114.13 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=87.4
Q ss_pred CcEEEeChhhHHHhhhcCCcEEEEEECCC--ChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCE
Q psy7943 25 DGVLVLTQDNFQSSIEKHDHILVEFYAPW--CGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPT 102 (142)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~--C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~ 102 (142)
.++..++..+|+.....+.+.+|.||++| ||+|+.+.|.+.++++.+. ..+.++.+|+++++++..+|+|+++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~---~~v~f~kVdid~~~~la~~f~V~sIPT 86 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP---GRFRAAVVGRADEQALAARFGVLRTPA 86 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC---CcEEEEEEECCCCHHHHHHcCCCcCCE
Confidence 45778899999998999999999999997 9999999999999999997 468899999999999999999999999
Q ss_pred EEEEeCCceEe-eCcccccccc
Q psy7943 103 LKFFKKRSIIE-YGEVTSVEYC 123 (142)
Q Consensus 103 ~~i~~~~~~~~-~~g~~~~~~l 123 (142)
+++|++|+.+. ..|..+.+++
T Consensus 87 li~fkdGk~v~~~~G~~~~~e~ 108 (111)
T cd02965 87 LLFFRDGRYVGVLAGIRDWDEY 108 (111)
T ss_pred EEEEECCEEEEEEeCccCHHHH
Confidence 99999999776 7788777766
No 33
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.85 E-value=2.2e-20 Score=111.49 Aligned_cols=97 Identities=28% Similarity=0.600 Sum_probs=85.1
Q ss_pred ChhhHHHhhhc-CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCC
Q psy7943 31 TQDNFQSSIEK-HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKR 109 (142)
Q Consensus 31 ~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~ 109 (142)
+.+++.+.+.+ +++++|+||++||++|+.+.+.+.++++.+. ..+.++.+|++++..++++|++.++|++++|++|
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYE---GKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhc---CCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 45678886655 5699999999999999999999999998876 4699999999999999999999999999999988
Q ss_pred ceEe-eCcccccccccccchHHhh
Q psy7943 110 SIIE-YGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 110 ~~~~-~~g~~~~~~l~~~~~~~~~ 132 (142)
+... +.|..+.+++ .+++.+.
T Consensus 79 ~~~~~~~g~~~~~~l--~~~l~~~ 100 (101)
T TIGR01068 79 KEVDRSVGALPKAAL--KQLINKN 100 (101)
T ss_pred cEeeeecCCCCHHHH--HHHHHhh
Confidence 8655 7788888999 8888765
No 34
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.85 E-value=1.2e-20 Score=119.35 Aligned_cols=100 Identities=19% Similarity=0.358 Sum_probs=80.6
Q ss_pred hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEe-CCc
Q psy7943 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFK-KRS 110 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~-~~~ 110 (142)
...++.++.++++++|+||++||++|+.+.|.+.++++.+.+. ..+..+.+|.++...+.++|+++++|++++|+ +|.
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 4567788889999999999999999999999999999988631 23444444444456889999999999999997 455
Q ss_pred eEe-eCcccccccccccchHHhhcc
Q psy7943 111 IIE-YGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 111 ~~~-~~g~~~~~~l~~~~~~~~~~~ 134 (142)
.+. +.|..+.+++ ..++.+.+.
T Consensus 89 ~v~~~~G~~~~~~l--~~~l~~l~~ 111 (142)
T cd02950 89 EEGQSIGLQPKQVL--AQNLDALVA 111 (142)
T ss_pred EEEEEeCCCCHHHH--HHHHHHHHc
Confidence 554 7888888889 888888764
No 35
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.85 E-value=1.9e-20 Score=112.44 Aligned_cols=99 Identities=37% Similarity=0.714 Sum_probs=85.6
Q ss_pred EEEeChhhHHHhhh-cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEE
Q psy7943 27 VLVLTQDNFQSSIE-KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 27 ~~~~~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i 105 (142)
+..+++++|++.+. ++++++|+||++||++|+.+.|.+.++++.+++. .++.++.+|++++ +++..+++.++|++++
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 56788999999765 4689999999999999999999999999988742 4799999999987 5788899999999999
Q ss_pred EeCCc---eEeeCcccccccccccchH
Q psy7943 106 FKKRS---IIEYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 106 ~~~~~---~~~~~g~~~~~~l~~~~~~ 129 (142)
|++|+ ..+|.|..+.+++ ..|+
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~l--~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDRTLEDL--IKFI 104 (104)
T ss_pred EcCCCcCCceEccCCcCHHHH--HhhC
Confidence 99887 4558999998888 7764
No 36
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.85 E-value=3.3e-20 Score=113.11 Aligned_cols=90 Identities=19% Similarity=0.318 Sum_probs=79.4
Q ss_pred cEEEeCh-hhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEE
Q psy7943 26 GVLVLTQ-DNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104 (142)
Q Consensus 26 ~~~~~~~-~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~ 104 (142)
.+..+++ ++|.+.+.++++++|+||++||++|+.+.|.+.++++.++ ++.++.+|.++...+.++|++.++||++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 4566666 8899999999999999999999999999999999998875 5899999999999999999999999999
Q ss_pred EEeCCceEe-eCcccc
Q psy7943 105 FFKKRSIIE-YGEVTS 119 (142)
Q Consensus 105 i~~~~~~~~-~~g~~~ 119 (142)
+|++|+.+. +.|..+
T Consensus 81 ~fk~G~~v~~~~g~~~ 96 (113)
T cd02989 81 LFKNGKTVDRIVGFEE 96 (113)
T ss_pred EEECCEEEEEEECccc
Confidence 999998664 555443
No 37
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.85 E-value=7e-21 Score=114.60 Aligned_cols=92 Identities=23% Similarity=0.380 Sum_probs=78.1
Q ss_pred hhHHHhhhcCCcEEEEEECCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEeeccc----cHHHHHHcCCCCCCEEEE
Q psy7943 33 DNFQSSIEKHDHILVEFYAPWCGHCKQLVPEY---SKAALQLATDGHDIKLAKVDATQ----HTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~i~~~P~~~i 105 (142)
++|.++++++++++|+||++||++|+.+.+.+ .++.+.+. .++.++.+|+++ ..++.++|+++++|++++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK---KDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh---CCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 56888889999999999999999999999987 56777665 378999999876 578999999999999999
Q ss_pred EeC--Cc-eEeeCcccccccccccchH
Q psy7943 106 FKK--RS-IIEYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 106 ~~~--~~-~~~~~g~~~~~~l~~~~~~ 129 (142)
|++ |+ ..++.|..+.+++ .+++
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l--~~~l 103 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEF--LEAL 103 (104)
T ss_pred ECCCCCCCCcccccccCHHHH--HHHh
Confidence 994 45 3448899999888 7665
No 38
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.84 E-value=2.1e-20 Score=114.12 Aligned_cols=89 Identities=22% Similarity=0.402 Sum_probs=77.8
Q ss_pred CcEEEeChhhHHHhhhcC---CcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCC
Q psy7943 25 DGVLVLTQDNFQSSIEKH---DHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYP 101 (142)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P 101 (142)
..+..+++++|.+.+.+. ++++|+||++||++|+.+.|.+.++++.+. ++.|+.+|++++ .++++|+++++|
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~----~v~f~~vd~~~~-~l~~~~~i~~~P 78 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP----ETKFVKINAEKA-FLVNYLDIKVLP 78 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CcEEEEEEchhh-HHHHhcCCCcCC
Confidence 356778889999877654 899999999999999999999999999886 578999999998 999999999999
Q ss_pred EEEEEeCCceEe-eCccc
Q psy7943 102 TLKFFKKRSIIE-YGEVT 118 (142)
Q Consensus 102 ~~~i~~~~~~~~-~~g~~ 118 (142)
|+++|++|+.+. +.|..
T Consensus 79 t~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 79 TLLVYKNGELIDNIVGFE 96 (113)
T ss_pred EEEEEECCEEEEEEecHH
Confidence 999999998665 65644
No 39
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.84 E-value=2e-20 Score=111.14 Aligned_cols=90 Identities=18% Similarity=0.476 Sum_probs=76.7
Q ss_pred ChhhHHHhhhcC--CcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC
Q psy7943 31 TQDNFQSSIEKH--DHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108 (142)
Q Consensus 31 ~~~~~~~~~~~~--~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~ 108 (142)
+.++|++.+.+. ++++|+||++||++|+.+.+.+.++++.+. ..+.++.+|+++..+++++|+++++||+++|++
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~---~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAF---PSVLFLSIEAEELPEISEKFEITAVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhC---CceEEEEEccccCHHHHHhcCCccccEEEEEEC
Confidence 356788877665 999999999999999999999999998863 589999999999999999999999999999998
Q ss_pred CceEeeCcccccccc
Q psy7943 109 RSIIEYGEVTSVEYC 123 (142)
Q Consensus 109 ~~~~~~~g~~~~~~l 123 (142)
|+.+....+...++|
T Consensus 78 g~~~~~~~g~~~~~l 92 (97)
T cd02984 78 GTIVDRVSGADPKEL 92 (97)
T ss_pred CEEEEEEeCCCHHHH
Confidence 877664333455555
No 40
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.84 E-value=2.2e-20 Score=111.15 Aligned_cols=98 Identities=45% Similarity=0.843 Sum_probs=86.1
Q ss_pred EeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC
Q psy7943 29 VLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108 (142)
Q Consensus 29 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~ 108 (142)
.++.++|.+.+.++++++|+||++||++|+.+.+.+.++++.++ ....+.++.+|++++..++++|+++++|+++++++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELK-GDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc-cCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 46778999999988899999999999999999999999998884 22589999999999999999999999999999999
Q ss_pred Cc--eEeeCcccccccccccchH
Q psy7943 109 RS--IIEYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 109 ~~--~~~~~g~~~~~~l~~~~~~ 129 (142)
++ ..++.|..+.+++ .+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i--~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESL--VEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHH--HhhC
Confidence 83 5558888888888 6653
No 41
>KOG0907|consensus
Probab=99.84 E-value=1.6e-20 Score=112.54 Aligned_cols=84 Identities=26% Similarity=0.567 Sum_probs=72.6
Q ss_pred hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEe-eCccc
Q psy7943 40 EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIE-YGEVT 118 (142)
Q Consensus 40 ~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~-~~g~~ 118 (142)
..+++++|+|||+||++|+.+.|.+.+++..|. ++.|+.+|.++...+++.+++...||++++++|..+. +.|..
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~----~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP----DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGAN 94 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC----CCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCC
Confidence 346999999999999999999999999999998 4999999999999999999999999999999998666 66655
Q ss_pred ccccccccchHH
Q psy7943 119 SVEYCYQRNWHK 130 (142)
Q Consensus 119 ~~~~l~~~~~~~ 130 (142)
.. .+ .+.+.
T Consensus 95 ~~-~l--~~~i~ 103 (106)
T KOG0907|consen 95 KA-EL--EKKIA 103 (106)
T ss_pred HH-HH--HHHHH
Confidence 44 55 54443
No 42
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.83 E-value=5e-20 Score=115.27 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=80.5
Q ss_pred ChhhHHHhhh--cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEE-EEe
Q psy7943 31 TQDNFQSSIE--KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK-FFK 107 (142)
Q Consensus 31 ~~~~~~~~~~--~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~-i~~ 107 (142)
+.++|++.+. .+++++|.||++||++|+.+.|.+.++++.+. ..+.++.+|.++++.+.++|+|++.|+++ +|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~---~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIK---NFAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC---CceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 4678888774 57899999999999999999999999999987 35888999999999999999999787666 899
Q ss_pred CCc-eEe-eCc--------ccccccccccchHHhhc
Q psy7943 108 KRS-IIE-YGE--------VTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 108 ~~~-~~~-~~g--------~~~~~~l~~~~~~~~~~ 133 (142)
+|+ .+. ..| ..+.+++ .+.++...
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l--~~~i~~~~ 120 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEF--IDIVETVY 120 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHH--HHHHHHHH
Confidence 888 554 456 3556667 66665554
No 43
>PTZ00051 thioredoxin; Provisional
Probab=99.83 E-value=6.1e-20 Score=109.28 Aligned_cols=89 Identities=29% Similarity=0.643 Sum_probs=77.7
Q ss_pred eChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCC
Q psy7943 30 LTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKR 109 (142)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~ 109 (142)
.+.+++...++++++++++||++||++|+.+.+.+.++++.+. ++.++.+|++++..++++|++.++|+++++++|
T Consensus 6 ~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 6 TSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDELSEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred cCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcchHHHHHHCCCceeeEEEEEeCC
Confidence 3467888888899999999999999999999999999988664 689999999999999999999999999999998
Q ss_pred ceEe-eCcccccccc
Q psy7943 110 SIIE-YGEVTSVEYC 123 (142)
Q Consensus 110 ~~~~-~~g~~~~~~l 123 (142)
+.+. +.|. ..++|
T Consensus 82 ~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 82 SVVDTLLGA-NDEAL 95 (98)
T ss_pred eEEEEEeCC-CHHHh
Confidence 8775 6664 55555
No 44
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.83 E-value=1.2e-19 Score=108.89 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=75.1
Q ss_pred hhhHHHhhh--cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCC
Q psy7943 32 QDNFQSSIE--KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKR 109 (142)
Q Consensus 32 ~~~~~~~~~--~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~ 109 (142)
.++|++.+. +++++||.|+++||++|+.+.|.+.++++.++ ..+.|..+|.++.+.+.+.|++...||+++|.+|
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~---~~~~f~kVDVDev~dva~~y~I~amPtfvffkng 78 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS---KMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc---CceEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence 356777665 68999999999999999999999999999997 2399999999999999999999999999999999
Q ss_pred ceEe-eCcccccccc
Q psy7943 110 SIIE-YGEVTSVEYC 123 (142)
Q Consensus 110 ~~~~-~~g~~~~~~l 123 (142)
+.+. --|..+...+
T Consensus 79 kh~~~d~gt~~~~k~ 93 (114)
T cd02986 79 QHMKVDYGSPDHTKF 93 (114)
T ss_pred cEEEEecCCCCCcEE
Confidence 8665 3344444333
No 45
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.82 E-value=6.1e-20 Score=111.25 Aligned_cols=101 Identities=23% Similarity=0.385 Sum_probs=81.2
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEEC--CCChhhhhhhHHHHHHHHHHhcCCCceEEEEeec-----cccHHHHHHcCCC
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYA--PWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA-----TQHTALAEQYGVR 98 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~--~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~-----~~~~~~~~~~~i~ 98 (142)
++..+++.+|++.+.+++.++|.||+ |||+ + .|.+.+++..+......+.++.||+ .++..++++|+|+
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCC
Confidence 46789999999999999999999999 7776 2 2444444444432223589999999 5678999999999
Q ss_pred --CCCEEEEEeCCc---eEeeCcc-cccccccccchHHhh
Q psy7943 99 --GYPTLKFFKKRS---IIEYGEV-TSVEYCYQRNWHKRA 132 (142)
Q Consensus 99 --~~P~~~i~~~~~---~~~~~g~-~~~~~l~~~~~~~~~ 132 (142)
++||+.+|++|+ .+.|.|. ++.++| .+|+.+.
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~l--v~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDAL--QRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHH--HHHHHhc
Confidence 999999999885 4679997 999999 9999764
No 46
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.82 E-value=2e-19 Score=109.89 Aligned_cols=87 Identities=39% Similarity=0.733 Sum_probs=75.1
Q ss_pred cEEEeChhhHHHhhhc-CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--ccHHHHHHcCCCCCCE
Q psy7943 26 GVLVLTQDNFQSSIEK-HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--QHTALAEQYGVRGYPT 102 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~~P~ 102 (142)
.+..+++++|+..+.+ +++++|+||++||++|+.+.|.+.++++.+++....+.++.+|++ ++..++++|+++++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 4678899999998754 569999999999999999999999999988754456888999975 4678999999999999
Q ss_pred EEEEeCCceE
Q psy7943 103 LKFFKKRSII 112 (142)
Q Consensus 103 ~~i~~~~~~~ 112 (142)
+++|++|+..
T Consensus 82 ~~lf~~~~~~ 91 (114)
T cd02992 82 LRYFPPFSKE 91 (114)
T ss_pred EEEECCCCcc
Confidence 9999998733
No 47
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.82 E-value=1.9e-19 Score=107.09 Aligned_cols=86 Identities=27% Similarity=0.527 Sum_probs=77.2
Q ss_pred hhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEe-eCcc
Q psy7943 39 IEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIE-YGEV 117 (142)
Q Consensus 39 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~-~~g~ 117 (142)
.+.+++++++||++||++|+.+.+.+.++++.+. ..+.+..+|++++.++..++++.++|+++++++|+.+. +.|.
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~---~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~ 86 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFD---GAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGV 86 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhC---CceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCC
Confidence 4578999999999999999999999999998886 46899999999999999999999999999999887665 7888
Q ss_pred cccccccccchH
Q psy7943 118 TSVEYCYQRNWH 129 (142)
Q Consensus 118 ~~~~~l~~~~~~ 129 (142)
.+.+++ ..++
T Consensus 87 ~~~~~~--~~~l 96 (97)
T cd02949 87 KMKSEY--REFI 96 (97)
T ss_pred ccHHHH--HHhh
Confidence 888888 7765
No 48
>KOG4277|consensus
Probab=99.81 E-value=6.6e-20 Score=125.48 Aligned_cols=94 Identities=37% Similarity=0.767 Sum_probs=88.4
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEeeCccccc
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSV 120 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~ 120 (142)
...-++|.||+|||.+|++++|.+.++--.+++.+..+..+++|+..-+.++.++++++|||+.+|+++..+.|.|+++.
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~K 121 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREK 121 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccH
Confidence 46779999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred ccccccchHHhhccce
Q psy7943 121 EYCYQRNWHKRAVTSV 136 (142)
Q Consensus 121 ~~l~~~~~~~~~~~~~ 136 (142)
+++ ..|..+-.+..
T Consensus 122 d~i--ieFAhR~a~ai 135 (468)
T KOG4277|consen 122 DAI--IEFAHRCAAAI 135 (468)
T ss_pred HHH--HHHHHhcccce
Confidence 999 99998876553
No 49
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.81 E-value=3.1e-19 Score=110.80 Aligned_cols=100 Identities=16% Similarity=0.265 Sum_probs=81.5
Q ss_pred hhhHHHhhhcC-CcEEEEEECCCChhhhhhhHHHH---HHHHHHhcCCCceEEEEeecccc-------------HHHHHH
Q psy7943 32 QDNFQSSIEKH-DHILVEFYAPWCGHCKQLVPEYS---KAALQLATDGHDIKLAKVDATQH-------------TALAEQ 94 (142)
Q Consensus 32 ~~~~~~~~~~~-~~~vv~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~-------------~~~~~~ 94 (142)
.+.+..+.+++ ++++|+||++||++|+.+.+.+. .+.+.+. .++.++.+|.+.+ .++..+
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~---~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR---AHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH---hheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 35677788889 99999999999999999999885 4555554 3677888887754 688999
Q ss_pred cCCCCCCEEEEEeCC-c-eE-eeCcccccccccccchHHhhccce
Q psy7943 95 YGVRGYPTLKFFKKR-S-II-EYGEVTSVEYCYQRNWHKRAVTSV 136 (142)
Q Consensus 95 ~~i~~~P~~~i~~~~-~-~~-~~~g~~~~~~l~~~~~~~~~~~~~ 136 (142)
|+++++|++++++++ | .+ ++.|..+.+.+ .++++.++...
T Consensus 80 ~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~--~~~l~~~~~~~ 122 (125)
T cd02951 80 YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEF--LAYLEYVQEKA 122 (125)
T ss_pred cCCccccEEEEEcCCCCceeEEecCCCCHHHH--HHHHHHHHhhh
Confidence 999999999999986 4 33 47888888999 99988877653
No 50
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.81 E-value=2.7e-19 Score=109.09 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=80.0
Q ss_pred HHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCc---e
Q psy7943 35 FQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS---I 111 (142)
Q Consensus 35 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~---~ 111 (142)
+.+.+.++..++|+||++||++|+.+.|.+.+++..+. .+.+..+|.++++++.++|++.++|+++++++|+ .
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~----~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~ 90 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSD----KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGG 90 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC----ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecce
Confidence 55556677789999999999999999999999987653 6889999999999999999999999999999865 4
Q ss_pred EeeCcccccccccccchHHhhc
Q psy7943 112 IEYGEVTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 112 ~~~~g~~~~~~l~~~~~~~~~~ 133 (142)
+++.|..+..++ ..++...+
T Consensus 91 ~~~~G~~~~~el--~~~i~~i~ 110 (113)
T cd02975 91 IRYYGLPAGYEF--ASLIEDIV 110 (113)
T ss_pred EEEEecCchHHH--HHHHHHHH
Confidence 468898888898 88887664
No 51
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.80 E-value=7e-19 Score=128.82 Aligned_cols=105 Identities=27% Similarity=0.542 Sum_probs=89.2
Q ss_pred CCCcEEEeChhhHHHhhh---cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH-HH-HHHcCC
Q psy7943 23 EEDGVLVLTQDNFQSSIE---KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT-AL-AEQYGV 97 (142)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~---~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~-~~~~~i 97 (142)
.+..+..++.++|+..++ ++++++|+||++||++|+.+.|.+.++++.+.+. .+.++.+|++.+. .+ +++|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCccHHHHHHcCC
Confidence 455788999999999875 7899999999999999999999999999998742 4788888888653 34 478999
Q ss_pred CCCCEEEEEeCCc--eEeeC-cccccccccccchHHh
Q psy7943 98 RGYPTLKFFKKRS--IIEYG-EVTSVEYCYQRNWHKR 131 (142)
Q Consensus 98 ~~~P~~~i~~~~~--~~~~~-g~~~~~~l~~~~~~~~ 131 (142)
+++||+++|++|+ .+.|. |.++.+.| ..|++.
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L--~~Fv~~ 461 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSL--MSFVNL 461 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHH--HHHHHh
Confidence 9999999999986 56686 57999999 998864
No 52
>PTZ00102 disulphide isomerase; Provisional
Probab=99.79 E-value=8.2e-19 Score=130.48 Aligned_cols=109 Identities=28% Similarity=0.586 Sum_probs=97.4
Q ss_pred CCcEEEeChhhHHHh-hhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCE
Q psy7943 24 EDGVLVLTQDNFQSS-IEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPT 102 (142)
Q Consensus 24 ~~~~~~~~~~~~~~~-~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~ 102 (142)
...+..++.++|++. .+++++++|+||++||++|+.+.|.+.++++.+++. ..+.++.+|++.+...+++++++++||
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~~~~~~~~~v~~~Pt 434 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTANETPLEEFSWSAFPT 434 (477)
T ss_pred CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCCccchhcCCCcccCe
Confidence 445888999999997 577899999999999999999999999999988743 478999999999999999999999999
Q ss_pred EEEEeCCce--EeeCcccccccccccchHHhhccc
Q psy7943 103 LKFFKKRSI--IEYGEVTSVEYCYQRNWHKRAVTS 135 (142)
Q Consensus 103 ~~i~~~~~~--~~~~g~~~~~~l~~~~~~~~~~~~ 135 (142)
+++|++|+. .++.|..+.+++ .+|+.+....
T Consensus 435 ~~~~~~~~~~~~~~~G~~~~~~l--~~~i~~~~~~ 467 (477)
T PTZ00102 435 ILFVKAGERTPIPYEGERTVEGF--KEFVNKHATN 467 (477)
T ss_pred EEEEECCCcceeEecCcCCHHHH--HHHHHHcCCC
Confidence 999998874 469999999999 9999998765
No 53
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.79 E-value=1.8e-18 Score=112.88 Aligned_cols=86 Identities=21% Similarity=0.388 Sum_probs=75.6
Q ss_pred CCCcEEEeCh-hhHHHhhhcC---CcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCC
Q psy7943 23 EEDGVLVLTQ-DNFQSSIEKH---DHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVR 98 (142)
Q Consensus 23 ~~~~~~~~~~-~~~~~~~~~~---~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~ 98 (142)
....+..+++ ++|...+.+. .++||+||++||++|+.+.|.+.+++..+. .+.|+.+|+++. .+..+|++.
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~~-~l~~~f~v~ 134 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASAT-GASDEFDTD 134 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccch-hhHHhCCCC
Confidence 3456778888 8999987543 489999999999999999999999999875 689999999987 899999999
Q ss_pred CCCEEEEEeCCceEe
Q psy7943 99 GYPTLKFFKKRSIIE 113 (142)
Q Consensus 99 ~~P~~~i~~~~~~~~ 113 (142)
++||+++|++|..+.
T Consensus 135 ~vPTlllyk~G~~v~ 149 (175)
T cd02987 135 ALPALLVYKGGELIG 149 (175)
T ss_pred CCCEEEEEECCEEEE
Confidence 999999999998664
No 54
>PLN02309 5'-adenylylsulfate reductase
Probab=99.79 E-value=1.5e-18 Score=127.03 Aligned_cols=106 Identities=25% Similarity=0.524 Sum_probs=91.5
Q ss_pred CCCcEEEeChhhHHHhh---hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-ccHHHHH-HcCC
Q psy7943 23 EEDGVLVLTQDNFQSSI---EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-QHTALAE-QYGV 97 (142)
Q Consensus 23 ~~~~~~~~~~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~-~~~i 97 (142)
....+..++.++|++.+ +++++++|+||++||++|+.+.|.+.++++.+.+ .++.++.+|++ .+..+++ +|+|
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~--~~V~f~kVD~d~~~~~la~~~~~I 420 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG--SGVKVAKFRADGDQKEFAKQELQL 420 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCeEEEEEECCCcchHHHHhhCCC
Confidence 44578889999999976 4789999999999999999999999999999873 36999999999 7778886 6999
Q ss_pred CCCCEEEEEeCCc--eEeeCc-ccccccccccchHHhh
Q psy7943 98 RGYPTLKFFKKRS--IIEYGE-VTSVEYCYQRNWHKRA 132 (142)
Q Consensus 98 ~~~P~~~i~~~~~--~~~~~g-~~~~~~l~~~~~~~~~ 132 (142)
+++||+++|++|. .+.|.| .++.+.| ..|++..
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~~~~R~~~~L--~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYPSEKRDVDSL--LSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeecCCCCcCHHHH--HHHHHHh
Confidence 9999999998876 566874 6899999 9998764
No 55
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.79 E-value=1.7e-18 Score=106.76 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=77.5
Q ss_pred CcEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc---------cHHHHHHc
Q psy7943 25 DGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ---------HTALAEQY 95 (142)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------~~~~~~~~ 95 (142)
+++..++.+++...+++++..+|+|+++|||+|+.+.|.+.++++..+ ..+.++.+|.+. -.++.++|
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~---~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK---APIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC---CcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 346678888999999999999999999999999999999999998733 456666666432 12556676
Q ss_pred CC----CCCCEEEEEeCCceEe-eCc-ccccccccccchH
Q psy7943 96 GV----RGYPTLKFFKKRSIIE-YGE-VTSVEYCYQRNWH 129 (142)
Q Consensus 96 ~i----~~~P~~~i~~~~~~~~-~~g-~~~~~~l~~~~~~ 129 (142)
++ .++||+++|++|+.+. ..| ..+.++| .+++
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l--~~~~ 120 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQEL--QDIA 120 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHH--HHHh
Confidence 54 4599999999999777 667 4457777 6655
No 56
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.78 E-value=3.5e-18 Score=99.87 Aligned_cols=90 Identities=33% Similarity=0.665 Sum_probs=79.1
Q ss_pred hHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEe
Q psy7943 34 NFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIE 113 (142)
Q Consensus 34 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~ 113 (142)
+|+..++.+++++|+||++||++|+.+.+.+.++.+. . .++.++.+|++.+.+++++|++.++|+++++++|+.+.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y---PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-C---CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 5677777789999999999999999999999999887 2 57999999999999999999999999999999998555
Q ss_pred -eCcccccccccccchH
Q psy7943 114 -YGEVTSVEYCYQRNWH 129 (142)
Q Consensus 114 -~~g~~~~~~l~~~~~~ 129 (142)
+.|..+.+++ .+++
T Consensus 78 ~~~g~~~~~~l--~~~i 92 (93)
T cd02947 78 RVVGADPKEEL--EEFL 92 (93)
T ss_pred EEecCCCHHHH--HHHh
Confidence 7787777887 6665
No 57
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.77 E-value=1.2e-17 Score=106.55 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=67.0
Q ss_pred hhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc----------cHHHH-HHc---CCCCCCEE
Q psy7943 38 SIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ----------HTALA-EQY---GVRGYPTL 103 (142)
Q Consensus 38 ~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------~~~~~-~~~---~i~~~P~~ 103 (142)
....++..+|+||++||++|+++.|.+.++++++. ..+..+.+|... ..... ..| ++.++|++
T Consensus 46 ~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt 122 (153)
T TIGR02738 46 HANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG---LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPAT 122 (153)
T ss_pred hhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC---CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeE
Confidence 34457778999999999999999999999998874 456666666432 12332 345 78999999
Q ss_pred EEEeCCc-e-E-eeCcccccccccccchHHhh
Q psy7943 104 KFFKKRS-I-I-EYGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 104 ~i~~~~~-~-~-~~~g~~~~~~l~~~~~~~~~ 132 (142)
++++.+| . . .+.|..+.+++ .+.+.+.
T Consensus 123 ~LID~~G~~i~~~~~G~~s~~~l--~~~I~~l 152 (153)
T TIGR02738 123 FLVNVNTRKAYPVLQGAVDEAEL--ANRMDEI 152 (153)
T ss_pred EEEeCCCCEEEEEeecccCHHHH--HHHHHHh
Confidence 9999764 3 3 36788888888 7777654
No 58
>KOG0190|consensus
Probab=99.74 E-value=4.8e-18 Score=124.14 Aligned_cols=105 Identities=34% Similarity=0.671 Sum_probs=92.6
Q ss_pred CcEEEeChhhHHHhh-hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEE
Q psy7943 25 DGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTL 103 (142)
Q Consensus 25 ~~~~~~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~ 103 (142)
..+..+.+++|+..+ +.+|-++|.||+|||+||+++.|.++++++.+++ ..++++.++|.+.+.- ...+++++||+
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAKmDaTaNd~--~~~~~~~fPTI 442 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAKMDATANDV--PSLKVDGFPTI 442 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEEeccccccC--ccccccccceE
Confidence 458889999999965 6799999999999999999999999999999997 5799999999998863 34567789999
Q ss_pred EEEeCCc---eEeeCcccccccccccchHHhhcc
Q psy7943 104 KFFKKRS---IIEYGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 104 ~i~~~~~---~~~~~g~~~~~~l~~~~~~~~~~~ 134 (142)
++++.|+ ++.|.|.++.+++ .+++.+...
T Consensus 443 ~~~pag~k~~pv~y~g~R~le~~--~~fi~~~a~ 474 (493)
T KOG0190|consen 443 LFFPAGHKSNPVIYNGDRTLEDL--KKFIKKSAT 474 (493)
T ss_pred EEecCCCCCCCcccCCCcchHHH--HhhhccCCC
Confidence 9999987 6679999999999 999987754
No 59
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.74 E-value=2e-17 Score=101.40 Aligned_cols=99 Identities=14% Similarity=0.386 Sum_probs=73.9
Q ss_pred hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCC--CCEEEEEeCC
Q psy7943 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRG--YPTLKFFKKR 109 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~--~P~~~i~~~~ 109 (142)
++.++.+..++++++|+||++||++|+.+.|.+.+...... ...+++.+.+|.+.. ...++|++.+ +|++++++++
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCC-chhhhcccCCCccceEEEECCC
Confidence 55667777889999999999999999999999999877654 224566666664432 3456888876 9999999854
Q ss_pred c-eE----eeCcccccccccccchHHhhcc
Q psy7943 110 S-II----EYGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 110 ~-~~----~~~g~~~~~~l~~~~~~~~~~~ 134 (142)
| .+ ...|..+...+ ...+....+
T Consensus 87 Gk~~~~~~~~~~~~~~~~f--~~~~~~~~~ 114 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYF--YSSAAQVTE 114 (117)
T ss_pred CCCchhhccCCCCcccccc--CCCHHHHHh
Confidence 4 32 35677788888 777766554
No 60
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.73 E-value=6.1e-17 Score=120.11 Aligned_cols=92 Identities=18% Similarity=0.283 Sum_probs=72.1
Q ss_pred hhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEE--------------------------eeccccHHHH
Q psy7943 39 IEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAK--------------------------VDATQHTALA 92 (142)
Q Consensus 39 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------vd~~~~~~~~ 92 (142)
+.++++++|+||++||++|+++.|.+.++++.+...+..+..+. ++.+.+..+.
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 34789999999999999999999999999998864333333322 2334566788
Q ss_pred HHcCCCCCCEEEEEeCCceE-e-eCcccccccccccchHHhh
Q psy7943 93 EQYGVRGYPTLKFFKKRSII-E-YGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 93 ~~~~i~~~P~~~i~~~~~~~-~-~~g~~~~~~l~~~~~~~~~ 132 (142)
+.|++.++|++++++++|.+ . +.|..+.+++ .++++..
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL--~a~Ie~~ 172 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQA--LALIRNP 172 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHH--HHHHHHh
Confidence 99999999999888766644 3 7899999999 8888743
No 61
>KOG0908|consensus
Probab=99.72 E-value=2.7e-17 Score=109.71 Aligned_cols=100 Identities=24% Similarity=0.437 Sum_probs=86.0
Q ss_pred eChhhHHHhhh--cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEe
Q psy7943 30 LTQDNFQSSIE--KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFK 107 (142)
Q Consensus 30 ~~~~~~~~~~~--~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~ 107 (142)
-++.+|+..+. .++.++|+|++.||+||++..|.+.+++..|+ ..+|.+||.++.+..+..+|+...||+++|+
T Consensus 7 ~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp----~aVFlkVdVd~c~~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 7 NSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP----GAVFLKVDVDECRGTAATNGVNAMPTFIFFR 82 (288)
T ss_pred cCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc----ccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence 34567877664 36799999999999999999999999999997 8899999999999999999999999999999
Q ss_pred CCceEeeCcccccccccccchHHhhccc
Q psy7943 108 KRSIIEYGEVTSVEYCYQRNWHKRAVTS 135 (142)
Q Consensus 108 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~ 135 (142)
+|..+.-.-+.++..| +.-+.++++.
T Consensus 83 ng~kid~~qGAd~~gL--e~kv~~~~st 108 (288)
T KOG0908|consen 83 NGVKIDQIQGADASGL--EEKVAKYAST 108 (288)
T ss_pred cCeEeeeecCCCHHHH--HHHHHHHhcc
Confidence 9998885556677777 7777766543
No 62
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.72 E-value=9.7e-17 Score=104.64 Aligned_cols=103 Identities=15% Similarity=0.309 Sum_probs=78.9
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-------------------
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT------------------- 86 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~------------------- 86 (142)
.+...+++.+.....++++++|+||++||++|+...+.+.++.+.+.+. ++.++.++.+
T Consensus 45 ~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~~~~~~ 122 (173)
T PRK03147 45 VLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYGLTFPV 122 (173)
T ss_pred EeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence 3445555555544457899999999999999999999999999999854 3445555443
Q ss_pred ---ccHHHHHHcCCCCCCEEEEEeCCceEe--eCcccccccccccchHHhh
Q psy7943 87 ---QHTALAEQYGVRGYPTLKFFKKRSIIE--YGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 87 ---~~~~~~~~~~i~~~P~~~i~~~~~~~~--~~g~~~~~~l~~~~~~~~~ 132 (142)
.+.++.++|++.++|++++++++|.+. +.|..+.+++ .+++.+.
T Consensus 123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l--~~~l~~~ 171 (173)
T PRK03147 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQL--EEYLEKI 171 (173)
T ss_pred EECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHH--HHHHHHh
Confidence 345788999999999999998777443 6888888888 8877654
No 63
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.72 E-value=7.4e-17 Score=106.56 Aligned_cols=88 Identities=19% Similarity=0.365 Sum_probs=74.2
Q ss_pred CCCcEEEeChhhHHHhh-hc--CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCC
Q psy7943 23 EEDGVLVLTQDNFQSSI-EK--HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRG 99 (142)
Q Consensus 23 ~~~~~~~~~~~~~~~~~-~~--~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~ 99 (142)
..+.+..++.++|...+ .+ +.++||+||++||++|+.+.+.+.++++.+. .+.|+.+|++.. ..+|++.+
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad~~---~~~~~i~~ 152 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIISTQC---IPNYPDKN 152 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhHHh---HhhCCCCC
Confidence 34578889999998754 33 3589999999999999999999999999886 689999998754 58999999
Q ss_pred CCEEEEEeCCceEe-eCcc
Q psy7943 100 YPTLKFFKKRSIIE-YGEV 117 (142)
Q Consensus 100 ~P~~~i~~~~~~~~-~~g~ 117 (142)
+||+++|++|..+. +.|.
T Consensus 153 lPTlliyk~G~~v~~ivG~ 171 (192)
T cd02988 153 LPTILVYRNGDIVKQFIGL 171 (192)
T ss_pred CCEEEEEECCEEEEEEeCc
Confidence 99999999998665 5553
No 64
>KOG0912|consensus
Probab=99.72 E-value=1.4e-17 Score=113.96 Aligned_cols=106 Identities=28% Similarity=0.580 Sum_probs=94.5
Q ss_pred ChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcC--CCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC
Q psy7943 31 TQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATD--GHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108 (142)
Q Consensus 31 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~ 108 (142)
+.+|++..+++.+.++|.|||+||+.++.++|.+.+.+..++.. +..+++++|||+++..++.+|.|..|||+-+|++
T Consensus 2 t~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 2 TSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred ccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 45788899999999999999999999999999999998877532 3579999999999999999999999999999999
Q ss_pred CceE--eeCcccccccccccchHHhhccceee
Q psy7943 109 RSII--EYGEVTSVEYCYQRNWHKRAVTSVII 138 (142)
Q Consensus 109 ~~~~--~~~g~~~~~~l~~~~~~~~~~~~~~~ 138 (142)
|... +|.|.++.+.+ .+++++.+...+.
T Consensus 82 G~~~~rEYRg~RsVeaL--~efi~kq~s~~i~ 111 (375)
T KOG0912|consen 82 GEMMKREYRGQRSVEAL--IEFIEKQLSDPIN 111 (375)
T ss_pred cchhhhhhccchhHHHH--HHHHHHHhccHHH
Confidence 9844 49999999999 9999988766543
No 65
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.72 E-value=7e-17 Score=92.97 Aligned_cols=80 Identities=15% Similarity=0.261 Sum_probs=69.7
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEeeCccccccccc
Q psy7943 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCY 124 (142)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~l~ 124 (142)
.+..||++||++|+.+.+.+.++++.+. ..+.+..+|.++++++.++|++.++|++++ +| ..++.|..+.+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g-~~~~~G~~~~~~l- 74 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG---DAVEVEYINVMENPQKAMEYGIMAVPAIVI--NG-DVEFIGAPTKEEL- 74 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc---CceEEEEEeCccCHHHHHHcCCccCCEEEE--CC-EEEEecCCCHHHH-
Confidence 4678999999999999999999998886 468899999999999999999999999986 44 3578898889999
Q ss_pred ccchHHhh
Q psy7943 125 QRNWHKRA 132 (142)
Q Consensus 125 ~~~~~~~~ 132 (142)
.+++.+.
T Consensus 75 -~~~l~~~ 81 (82)
T TIGR00411 75 -VEAIKKR 81 (82)
T ss_pred -HHHHHhh
Confidence 8888764
No 66
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.71 E-value=6.1e-17 Score=98.88 Aligned_cols=79 Identities=20% Similarity=0.394 Sum_probs=66.8
Q ss_pred ChhhHHHhhhc--CCcEEEEEEC-------CCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc-------cHHHHHH
Q psy7943 31 TQDNFQSSIEK--HDHILVEFYA-------PWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-------HTALAEQ 94 (142)
Q Consensus 31 ~~~~~~~~~~~--~~~~vv~f~~-------~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~~~~~~ 94 (142)
+.++|.+.+.. +++++|+||| +||++|+.+.|.+.+++..++ .++.++.+|.++ +..+..+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~---~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP---EDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC---CCCEEEEEEcCCcccccCcchhhHhc
Confidence 45677777664 7899999999 999999999999999998887 357888888875 4689999
Q ss_pred cCCC-CCCEEEEEeCCceE
Q psy7943 95 YGVR-GYPTLKFFKKRSII 112 (142)
Q Consensus 95 ~~i~-~~P~~~i~~~~~~~ 112 (142)
+++. ++||+++|++|+.+
T Consensus 85 ~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred cCcccCCCEEEEEcCCcee
Confidence 9998 99999999877544
No 67
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.70 E-value=9.5e-17 Score=118.82 Aligned_cols=111 Identities=34% Similarity=0.635 Sum_probs=94.6
Q ss_pred CCcEEEeChhhHHHhh-hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCE
Q psy7943 24 EDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPT 102 (142)
Q Consensus 24 ~~~~~~~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~ 102 (142)
...+..++..+|.+.+ ++++.++|+||++||++|+.+.|.+.++++.+.+.+..+.++.+|++.+... . +++.++|+
T Consensus 345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~-~-~~i~~~Pt 422 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVP-P-FEVEGFPT 422 (462)
T ss_pred CCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccC-C-CCccccCE
Confidence 3467788899999976 5689999999999999999999999999999985334799999999887533 3 99999999
Q ss_pred EEEEeCCce---EeeCcccccccccccchHHhhccceee
Q psy7943 103 LKFFKKRSI---IEYGEVTSVEYCYQRNWHKRAVTSVII 138 (142)
Q Consensus 103 ~~i~~~~~~---~~~~g~~~~~~l~~~~~~~~~~~~~~~ 138 (142)
+++|++|+. ..+.|..+.+.+ .+|+.+.....+.
T Consensus 423 ~~~~~~~~~~~~~~~~g~~~~~~l--~~~l~~~~~~~~~ 459 (462)
T TIGR01130 423 IKFVPAGKKSEPVPYDGDRTLEDF--SKFIAKHATFPLE 459 (462)
T ss_pred EEEEeCCCCcCceEecCcCCHHHH--HHHHHhcCCCCCc
Confidence 999998874 568999999999 9999988766544
No 68
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.70 E-value=1.2e-16 Score=98.56 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=63.7
Q ss_pred ChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHH---HHHHHHhcCCCceEEEEeeccccHHHHH--------HcCCCC
Q psy7943 31 TQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYS---KAALQLATDGHDIKLAKVDATQHTALAE--------QYGVRG 99 (142)
Q Consensus 31 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~--------~~~i~~ 99 (142)
+++.+..+.+++|+++|+|+++||++|+.+.+... ++.+.+. .+++.+.+|.++..++.+ .|++.+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~---~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN---ENFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh---CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 56778889999999999999999999999988543 3333333 489999999988766554 358999
Q ss_pred CCEEEEEeCCceEe
Q psy7943 100 YPTLKFFKKRSIIE 113 (142)
Q Consensus 100 ~P~~~i~~~~~~~~ 113 (142)
+|++++++++|...
T Consensus 81 ~Pt~vfl~~~G~~~ 94 (124)
T cd02955 81 WPLNVFLTPDLKPF 94 (124)
T ss_pred CCEEEEECCCCCEE
Confidence 99999999877443
No 69
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.70 E-value=3.5e-16 Score=103.19 Aligned_cols=88 Identities=17% Similarity=0.275 Sum_probs=66.8
Q ss_pred hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc-----------------------HHHHHHcC
Q psy7943 40 EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH-----------------------TALAEQYG 96 (142)
Q Consensus 40 ~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~ 96 (142)
.++++++|+||++||++|+++.|.+.++.+. ++.++.++.+++ ..+.+.|+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 3689999999999999999999999887541 334444443221 23556889
Q ss_pred CCCCCEEEEEeCCceEe--eCcccccccccccchHHhhccc
Q psy7943 97 VRGYPTLKFFKKRSIIE--YGEVTSVEYCYQRNWHKRAVTS 135 (142)
Q Consensus 97 i~~~P~~~i~~~~~~~~--~~g~~~~~~l~~~~~~~~~~~~ 135 (142)
+.++|++++++++|.+. +.|..+.+++ .+++...+..
T Consensus 140 v~~~P~t~vid~~G~i~~~~~G~~~~~~l--~~~i~~~~~~ 178 (185)
T PRK15412 140 VYGAPETFLIDGNGIIRYRHAGDLNPRVW--ESEIKPLWEK 178 (185)
T ss_pred CCcCCeEEEECCCceEEEEEecCCCHHHH--HHHHHHHHHH
Confidence 99999999998777544 6788888888 8888877754
No 70
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.69 E-value=1.8e-16 Score=95.03 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=80.2
Q ss_pred hHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCC--CCCEEEEEeC--C
Q psy7943 34 NFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVR--GYPTLKFFKK--R 109 (142)
Q Consensus 34 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~--~~P~~~i~~~--~ 109 (142)
++.....+++++++.|+++||++|+.+.+.+.++++.++ ..+.|+.+|+++...+.+.|++. ++|++++++. |
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~---~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~ 80 (103)
T cd02982 4 TFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFK---GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDG 80 (103)
T ss_pred HHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhC---CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccc
Confidence 344444457899999999999999999999999999998 57999999999999999999999 9999999999 6
Q ss_pred ceEeeCcc-cccccccccchHHhh
Q psy7943 110 SIIEYGEV-TSVEYCYQRNWHKRA 132 (142)
Q Consensus 110 ~~~~~~g~-~~~~~l~~~~~~~~~ 132 (142)
+.+.+.+. .+.+++ .+|+.+.
T Consensus 81 ~k~~~~~~~~~~~~l--~~fi~~~ 102 (103)
T cd02982 81 KKYLMPEEELTAESL--EEFVEDF 102 (103)
T ss_pred cccCCCccccCHHHH--HHHHHhh
Confidence 66665444 488899 8888764
No 71
>PTZ00062 glutaredoxin; Provisional
Probab=99.69 E-value=2e-16 Score=105.00 Aligned_cols=90 Identities=10% Similarity=0.133 Sum_probs=74.1
Q ss_pred ChhhHHHhhhcC-CcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCC
Q psy7943 31 TQDNFQSSIEKH-DHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKR 109 (142)
Q Consensus 31 ~~~~~~~~~~~~-~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~ 109 (142)
+.+++...++++ +.++++||++||++|+.+.+.+.++++.++ ++.|+.||.+ |+|.++|++++|++|
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEccc--------cCcccceEEEEEECC
Confidence 456777877754 789999999999999999999999999886 7999999977 999999999999999
Q ss_pred ceEeeCcccccccccccchHHhhcc
Q psy7943 110 SIIEYGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 110 ~~~~~~g~~~~~~l~~~~~~~~~~~ 134 (142)
+.+....+.++..+ ..++.+..+
T Consensus 73 ~~i~r~~G~~~~~~--~~~~~~~~~ 95 (204)
T PTZ00062 73 QLINSLEGCNTSTL--VSFIRGWAQ 95 (204)
T ss_pred EEEeeeeCCCHHHH--HHHHHHHcC
Confidence 98874334456666 666655543
No 72
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.66 E-value=1.1e-15 Score=96.58 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=58.1
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcC-----CCceEEEEeecccc-------------------------HH
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATD-----GHDIKLAKVDATQH-------------------------TA 90 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~-----~~~~~~~~vd~~~~-------------------------~~ 90 (142)
++++++|+|||+||++|+.+.|.+.++.+.+... ..++.++.++.+++ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 6899999999999999999999999988776532 12455555554421 25
Q ss_pred HHHHcCCCCCCEEEEEeCCceEee
Q psy7943 91 LAEQYGVRGYPTLKFFKKRSIIEY 114 (142)
Q Consensus 91 ~~~~~~i~~~P~~~i~~~~~~~~~ 114 (142)
+.++|++.++|++++++++|.+..
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEe
Confidence 778999999999999998886664
No 73
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.65 E-value=1.3e-15 Score=95.11 Aligned_cols=81 Identities=20% Similarity=0.404 Sum_probs=61.0
Q ss_pred hhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCc--eEEEEeecccc----------------------
Q psy7943 33 DNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHD--IKLAKVDATQH---------------------- 88 (142)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~--~~~~~vd~~~~---------------------- 88 (142)
..+.....++++++|+||++||++|+.+.|.+.++.+.+...+.+ +.++.+|.++.
T Consensus 9 ~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T cd03009 9 GKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERR 88 (131)
T ss_pred CCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHH
Confidence 333333347899999999999999999999999998888754223 55555553321
Q ss_pred HHHHHHcCCCCCCEEEEEeCCceEe
Q psy7943 89 TALAEQYGVRGYPTLKFFKKRSIIE 113 (142)
Q Consensus 89 ~~~~~~~~i~~~P~~~i~~~~~~~~ 113 (142)
..+.++|++.++|++++++++|.+.
T Consensus 89 ~~~~~~~~v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDADGEVV 113 (131)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEE
Confidence 3577899999999999999776554
No 74
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.65 E-value=2.7e-15 Score=113.63 Aligned_cols=100 Identities=23% Similarity=0.416 Sum_probs=77.5
Q ss_pred EEEe-ChhhHHHhh----hcCCcEEEEEECCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEeeccc----cHHHHHH
Q psy7943 27 VLVL-TQDNFQSSI----EKHDHILVEFYAPWCGHCKQLVPEY---SKAALQLATDGHDIKLAKVDATQ----HTALAEQ 94 (142)
Q Consensus 27 ~~~~-~~~~~~~~~----~~~~~~vv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~ 94 (142)
+..+ +.+++++.+ .++|+++|+||++||++|+.+++.+ .++.+.++ ++.++.+|.++ +.++.++
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~~~~~l~~~ 529 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNAEDVALLKH 529 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCChhhHHHHHH
Confidence 4444 345666644 3589999999999999999998875 45555554 57888899875 4688999
Q ss_pred cCCCCCCEEEEEeCCc-e---EeeCcccccccccccchHHhh
Q psy7943 95 YGVRGYPTLKFFKKRS-I---IEYGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 95 ~~i~~~P~~~i~~~~~-~---~~~~g~~~~~~l~~~~~~~~~ 132 (142)
|++.++|++++|+++| . .++.|..+.+++ .+++++.
T Consensus 530 ~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f--~~~L~~~ 569 (571)
T PRK00293 530 YNVLGLPTILFFDAQGQEIPDARVTGFMDAAAF--AAHLRQL 569 (571)
T ss_pred cCCCCCCEEEEECCCCCCcccccccCCCCHHHH--HHHHHHh
Confidence 9999999999998544 4 247899999999 8888775
No 75
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.64 E-value=5.6e-16 Score=94.27 Aligned_cols=88 Identities=28% Similarity=0.404 Sum_probs=61.5
Q ss_pred hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc--------------------HHHHHHcCCCC
Q psy7943 40 EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH--------------------TALAEQYGVRG 99 (142)
Q Consensus 40 ~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------------------~~~~~~~~i~~ 99 (142)
.++++++++||++||++|+.+.+.+............++.++.++++.. .++.++|++++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4689999999999999999999999876543322223566666666532 35889999999
Q ss_pred CCEEEEEeC-CceE-eeCcccccccccccchH
Q psy7943 100 YPTLKFFKK-RSII-EYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 100 ~P~~~i~~~-~~~~-~~~g~~~~~~l~~~~~~ 129 (142)
+||++++++ |+.+ .+.|..+.+++ .++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l--~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEEL--LKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHH--HHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHH--HhhC
Confidence 999999985 4445 37899999888 6553
No 76
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.64 E-value=3.4e-15 Score=88.27 Aligned_cols=70 Identities=26% Similarity=0.586 Sum_probs=55.5
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc-------------------------HHHHHHcC
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH-------------------------TALAEQYG 96 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------------------------~~~~~~~~ 96 (142)
||+++|+||++||++|++..|.+.++.+.++. +.++.++.++.++. ..+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 68999999999999999999999999999984 34555555555432 26889999
Q ss_pred CCCCCEEEEEeCCceE
Q psy7943 97 VRGYPTLKFFKKRSII 112 (142)
Q Consensus 97 i~~~P~~~i~~~~~~~ 112 (142)
+.++|++++++++|.+
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999998753
No 77
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.64 E-value=1.1e-15 Score=103.00 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=75.3
Q ss_pred CCcEEEEEEC---CCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceE--eeCc
Q psy7943 42 HDHILVEFYA---PWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSII--EYGE 116 (142)
Q Consensus 42 ~~~~vv~f~~---~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~--~~~g 116 (142)
+...++.|++ +||++|+.+.|.+.++++.+. +..+.++.+|.+++.+++++|++.++||+++|++|+.. ++.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence 4445666777 999999999999999999885 23578888998899999999999999999999998864 5889
Q ss_pred ccccccccccchHHhhc
Q psy7943 117 VTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 117 ~~~~~~l~~~~~~~~~~ 133 (142)
..+.+++ .+|++..+
T Consensus 97 ~~~~~~l--~~~i~~~~ 111 (215)
T TIGR02187 97 IPAGYEF--AALIEDIV 111 (215)
T ss_pred cCCHHHH--HHHHHHHH
Confidence 8888888 88888775
No 78
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.62 E-value=4e-15 Score=92.47 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=64.0
Q ss_pred hhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEee-----------------------ccccH
Q psy7943 33 DNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVD-----------------------ATQHT 89 (142)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd-----------------------~~~~~ 89 (142)
..+.....++++++|+||++||++|+++.|.+.++.+.+. +.++.++ .+.+.
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 90 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQGR-----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDG 90 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcc
Confidence 3344444468999999999999999999999999877652 3333333 23455
Q ss_pred HHHHHcCCCCCCEEEEEeCCceEe--eCcccccccc
Q psy7943 90 ALAEQYGVRGYPTLKFFKKRSIIE--YGEVTSVEYC 123 (142)
Q Consensus 90 ~~~~~~~i~~~P~~~i~~~~~~~~--~~g~~~~~~l 123 (142)
.+.+.|++.++|++++++++|.+. +.|..+.+.+
T Consensus 91 ~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 91 RVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred hHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 778889999999999998766544 6788777655
No 79
>KOG0191|consensus
Probab=99.62 E-value=2.4e-15 Score=109.32 Aligned_cols=101 Identities=37% Similarity=0.749 Sum_probs=89.0
Q ss_pred hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCC-c
Q psy7943 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKR-S 110 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~-~ 110 (142)
...+......++.++|.||++||++|+++.|.+.+++..++ ..+.++.+|++++..+|++|+++++||+.+|.+| .
T Consensus 37 ~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~---~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~ 113 (383)
T KOG0191|consen 37 DSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALK---GKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKK 113 (383)
T ss_pred cccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhc---CceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCc
Confidence 34444566789999999999999999999999999999998 4799999999999999999999999999999999 4
Q ss_pred eEeeCcccccccccccchHHhhcccee
Q psy7943 111 IIEYGEVTSVEYCYQRNWHKRAVTSVI 137 (142)
Q Consensus 111 ~~~~~g~~~~~~l~~~~~~~~~~~~~~ 137 (142)
.+.+.|..+.+.+ ..+..+.+.+..
T Consensus 114 ~~~~~~~~~~~~~--~~~~~~~~~~~~ 138 (383)
T KOG0191|consen 114 PIDYSGPRNAESL--AEFLIKELEPSV 138 (383)
T ss_pred eeeccCcccHHHH--HHHHHHhhcccc
Confidence 7779999999999 888887766543
No 80
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.61 E-value=4.2e-15 Score=100.23 Aligned_cols=94 Identities=21% Similarity=0.230 Sum_probs=74.1
Q ss_pred eChhhHHHhhhcCCc-EEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC
Q psy7943 30 LTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108 (142)
Q Consensus 30 ~~~~~~~~~~~~~~~-~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~ 108 (142)
++++..+.+....++ .++.||++||++|+.+.+.+.+++... ..+.+..+|.++++++.++|++.++||++++++
T Consensus 120 L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 120 LSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEANENPDLAEKYGVMSVPKIVINKG 195 (215)
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCCCCHHHHHHhCCccCCEEEEecC
Confidence 344444444443444 555599999999999999998888764 368888999999999999999999999999876
Q ss_pred CceEeeCcccccccccccchHHh
Q psy7943 109 RSIIEYGEVTSVEYCYQRNWHKR 131 (142)
Q Consensus 109 ~~~~~~~g~~~~~~l~~~~~~~~ 131 (142)
|.. +.|..+.+++ ..++.+
T Consensus 196 ~~~--~~G~~~~~~l--~~~l~~ 214 (215)
T TIGR02187 196 VEE--FVGAYPEEQF--LEYILS 214 (215)
T ss_pred CEE--EECCCCHHHH--HHHHHh
Confidence 543 7888888888 888765
No 81
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.61 E-value=6.6e-15 Score=92.15 Aligned_cols=75 Identities=23% Similarity=0.440 Sum_probs=57.7
Q ss_pred hhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcC--CCceEEEEeeccc-----------------------cHHHHH
Q psy7943 39 IEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATD--GHDIKLAKVDATQ-----------------------HTALAE 93 (142)
Q Consensus 39 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~--~~~~~~~~vd~~~-----------------------~~~~~~ 93 (142)
.-++++++|+||++||++|+.+.|.+.++.+.+.+. +..+.++.+|.+. ...+.+
T Consensus 14 ~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 93 (132)
T cd02964 14 ALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEK 93 (132)
T ss_pred HhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHH
Confidence 346899999999999999999999999999888754 2234455554321 124567
Q ss_pred HcCCCCCCEEEEEeCCceEe
Q psy7943 94 QYGVRGYPTLKFFKKRSIIE 113 (142)
Q Consensus 94 ~~~i~~~P~~~i~~~~~~~~ 113 (142)
.|++.++|++++++++|.+.
T Consensus 94 ~~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 94 QFKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred HcCCCCCCEEEEECCCCCEE
Confidence 79999999999999777555
No 82
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.61 E-value=1.2e-14 Score=94.56 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=67.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-----------ccHHHHHHcCC--CCCCEEEEEeCCceE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-----------QHTALAEQYGV--RGYPTLKFFKKRSII 112 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-----------~~~~~~~~~~i--~~~P~~~i~~~~~~~ 112 (142)
+|+||++||++|+++.|.+.++++++. ..+..+.+|.+ ....+.+.|++ .++|++++++.+|.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g---~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i 149 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLE 149 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC---CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcE
Confidence 888999999999999999999999874 45555566533 12346778884 699999999988844
Q ss_pred ---eeCcccccccccccchHHhhccc
Q psy7943 113 ---EYGEVTSVEYCYQRNWHKRAVTS 135 (142)
Q Consensus 113 ---~~~g~~~~~~l~~~~~~~~~~~~ 135 (142)
.+.|..+.+++ .+.+.+.+..
T Consensus 150 ~~~~~~G~~~~~~L--~~~I~~ll~~ 173 (181)
T PRK13728 150 ALPLLQGATDAAGF--MARMDTVLQM 173 (181)
T ss_pred EEEEEECCCCHHHH--HHHHHHHHhh
Confidence 37899999999 8888777654
No 83
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.60 E-value=1e-14 Score=90.09 Aligned_cols=91 Identities=20% Similarity=0.319 Sum_probs=68.8
Q ss_pred EEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeec---------------------c
Q psy7943 28 LVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA---------------------T 86 (142)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~---------------------~ 86 (142)
..++++.+.....++++++|+||++||++|+.+.|.+.++.+.+ .+..+.+|- +
T Consensus 6 ~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (123)
T cd03011 6 TTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY-----PVVSVALRSGDDGAVARFMQKKGYGFPVIND 80 (123)
T ss_pred ecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhC-----CEEEEEccCCCHHHHHHHHHHcCCCccEEEC
Confidence 34445556665567899999999999999999999999887663 233333332 2
Q ss_pred ccHHHHHHcCCCCCCEEEEEeCCceEe-eCcccccccc
Q psy7943 87 QHTALAEQYGVRGYPTLKFFKKRSIIE-YGEVTSVEYC 123 (142)
Q Consensus 87 ~~~~~~~~~~i~~~P~~~i~~~~~~~~-~~g~~~~~~l 123 (142)
.+.++.++|++.++|++++++++|... +.|..+.+++
T Consensus 81 ~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~ 118 (123)
T cd03011 81 PDGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGL 118 (123)
T ss_pred CCcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHH
Confidence 456799999999999999999888332 6788888877
No 84
>KOG1731|consensus
Probab=99.59 E-value=2e-15 Score=110.96 Aligned_cols=111 Identities=29% Similarity=0.565 Sum_probs=88.2
Q ss_pred CCCCCcEEEeChhhHHHhhhc-CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--ccHHHHHHcCC
Q psy7943 21 VTEEDGVLVLTQDNFQSSIEK-HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--QHTALAEQYGV 97 (142)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i 97 (142)
+.+...+..++.++|..++.. .+-.+|.||++||++|+++.|.++++++....-..-+.+..|||- ++.++|+.|+|
T Consensus 35 y~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V 114 (606)
T KOG1731|consen 35 YSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSV 114 (606)
T ss_pred cCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCC
Confidence 445678999999999998865 458999999999999999999999999998766667889999984 68899999999
Q ss_pred CCCCEEEEEeCCceE-----eeCcccccccccccchHHhhc
Q psy7943 98 RGYPTLKFFKKRSII-----EYGEVTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 98 ~~~P~~~i~~~~~~~-----~~~g~~~~~~l~~~~~~~~~~ 133 (142)
+++|++.+|..+-.- .+.|.....++ ...+.+.+
T Consensus 115 ~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei--~~~l~~~l 153 (606)
T KOG1731|consen 115 SGYPTLRYFPPDSQNKTDGSDVSGPVIPSEI--RDQLIRTL 153 (606)
T ss_pred CCCceeeecCCccccCcCCCcccCCcchhhH--HHHHHHHH
Confidence 999999999877321 23444445555 55554443
No 85
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.59 E-value=7.8e-15 Score=101.78 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=72.7
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc---------cHHHHHHcCCCCCCEEEEEeC-Cc
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ---------HTALAEQYGVRGYPTLKFFKK-RS 110 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------~~~~~~~~~i~~~P~~~i~~~-~~ 110 (142)
++++++|+||++||++|+.+.|.+.++++.+. ..+..+.+|... +..+.++||+.++|+++++++ |+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 48999999999999999999999999998885 466677776542 456889999999999999997 56
Q ss_pred eEe--eCcccccccccccchHHhhcc
Q psy7943 111 IIE--YGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 111 ~~~--~~g~~~~~~l~~~~~~~~~~~ 134 (142)
.+. ..|..+.++| .+.+.....
T Consensus 242 ~v~~v~~G~~s~~eL--~~~i~~~a~ 265 (271)
T TIGR02740 242 QFTPIGFGVMSADEL--VDRILLAAH 265 (271)
T ss_pred EEEEEEeCCCCHHHH--HHHHHHHhc
Confidence 554 4588888888 777766544
No 86
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.58 E-value=1.8e-14 Score=94.13 Aligned_cols=92 Identities=8% Similarity=-0.010 Sum_probs=63.9
Q ss_pred hHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHH-HhcCCC-ceEEEEeecc-------------------------
Q psy7943 34 NFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQ-LATDGH-DIKLAKVDAT------------------------- 86 (142)
Q Consensus 34 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~-~~~~~~-~~~~~~vd~~------------------------- 86 (142)
.|....-+||+.+|+|||.||++|+..+|.+.++.+. +.-... ....++.|-+
T Consensus 51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vl 130 (184)
T TIGR01626 51 PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVV 130 (184)
T ss_pred eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEE
Confidence 3444445699999999999999999999999999643 211000 1133333321
Q ss_pred --ccHHHHHHcCCCCCCEE-EEEeCCceEe--eCcccccccccccc
Q psy7943 87 --QHTALAEQYGVRGYPTL-KFFKKRSIIE--YGEVTSVEYCYQRN 127 (142)
Q Consensus 87 --~~~~~~~~~~i~~~P~~-~i~~~~~~~~--~~g~~~~~~l~~~~ 127 (142)
.+..+...|++.++|+. ++++++|.+. +.|..+.+++ .+
T Consensus 131 lD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~--e~ 174 (184)
T TIGR01626 131 LDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDI--QT 174 (184)
T ss_pred ECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHH--HH
Confidence 12346678999999888 8999988655 6788887777 55
No 87
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.57 E-value=1.6e-14 Score=94.31 Aligned_cols=87 Identities=20% Similarity=0.304 Sum_probs=66.6
Q ss_pred hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeec-----------------------cccHHHHHHcC
Q psy7943 40 EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA-----------------------TQHTALAEQYG 96 (142)
Q Consensus 40 ~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~ 96 (142)
.++++++|+||++||++|+.+.|.++++.+. ++.++.++. +.+..+.+.|+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~ 134 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLG 134 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcC
Confidence 4689999999999999999999999887642 233333332 23345677899
Q ss_pred CCCCCEEEEEeCCceEe--eCcccccccccccchHHhhcc
Q psy7943 97 VRGYPTLKFFKKRSIIE--YGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 97 i~~~P~~~i~~~~~~~~--~~g~~~~~~l~~~~~~~~~~~ 134 (142)
+.++|++++++++|.++ +.|..+.+++ .+++.++++
T Consensus 135 v~~~P~~~~id~~G~i~~~~~G~~~~~~l--~~~l~~~~~ 172 (173)
T TIGR00385 135 VYGAPETFLVDGNGVILYRHAGPLNNEVW--TEGFLPAME 172 (173)
T ss_pred CeeCCeEEEEcCCceEEEEEeccCCHHHH--HHHHHHHhh
Confidence 99999999998766544 6788899999 888888764
No 88
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.56 E-value=3.1e-14 Score=86.74 Aligned_cols=74 Identities=22% Similarity=0.331 Sum_probs=56.0
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEe-ecc--c-----------------cHHHHHHcCCCCC
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV-DAT--Q-----------------HTALAEQYGVRGY 100 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~v-d~~--~-----------------~~~~~~~~~i~~~ 100 (142)
++++++|+||++||++|+...|.+.++.+.+.+ .+.++.+ |.+ + +.++.++|+++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 489999999999999999999999998877752 2333333 221 1 1256677888889
Q ss_pred CEEEEEeCCceEeeCcc
Q psy7943 101 PTLKFFKKRSIIEYGEV 117 (142)
Q Consensus 101 P~~~i~~~~~~~~~~g~ 117 (142)
|++++++++|.+.+.|.
T Consensus 97 P~~~vid~~G~v~~~~~ 113 (114)
T cd02967 97 PYAVLLDEAGVIAAKGL 113 (114)
T ss_pred CeEEEECCCCeEEeccc
Confidence 99999998888887764
No 89
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.54 E-value=3.3e-14 Score=80.69 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=55.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEeeCcc-ccccccc
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEV-TSVEYCY 124 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~-~~~~~l~ 124 (142)
.|.||++||++|+.+.|.+.++++++. ..+.++.+| +.....+|++.++|++++ +|+.+ +.|. .+.+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~---~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l- 71 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELG---IDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEI- 71 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcC---CCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHH-
Confidence 378999999999999999999999886 467888887 233367899999999999 55544 6665 333666
Q ss_pred ccchH
Q psy7943 125 QRNWH 129 (142)
Q Consensus 125 ~~~~~ 129 (142)
.+++
T Consensus 72 -~~~l 75 (76)
T TIGR00412 72 -KEIL 75 (76)
T ss_pred -HHHh
Confidence 5443
No 90
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.54 E-value=9.9e-14 Score=91.83 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=70.1
Q ss_pred EeChhhHHH--hhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc------------------cc
Q psy7943 29 VLTQDNFQS--SIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT------------------QH 88 (142)
Q Consensus 29 ~~~~~~~~~--~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~------------------~~ 88 (142)
..+++.+.. ...++++++|+||++||++|++..|.+.++.+... .++.++..|-. ..
T Consensus 59 d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~---~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~ 135 (189)
T TIGR02661 59 DFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE---TDVVMISDGTPAEHRRFLKDHELGGERYVVS 135 (189)
T ss_pred CCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHHhcCCCcceeech
Confidence 344444333 23478999999999999999999999999876542 45666553311 13
Q ss_pred HHHHHHcCCCCCCEEEEEeCCceEeeCccc-ccccccccchHHhh
Q psy7943 89 TALAEQYGVRGYPTLKFFKKRSIIEYGEVT-SVEYCYQRNWHKRA 132 (142)
Q Consensus 89 ~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~-~~~~l~~~~~~~~~ 132 (142)
.++.+.|++..+|+.++++++|.+.+.|.. ..+++ .++++..
T Consensus 136 ~~i~~~y~v~~~P~~~lID~~G~I~~~g~~~~~~~l--e~ll~~l 178 (189)
T TIGR02661 136 AEIGMAFQVGKIPYGVLLDQDGKIRAKGLTNTREHL--ESLLEAD 178 (189)
T ss_pred hHHHHhccCCccceEEEECCCCeEEEccCCCCHHHH--HHHHHHH
Confidence 467788999999999999998988877654 34566 6656543
No 91
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.53 E-value=4.5e-14 Score=86.23 Aligned_cols=100 Identities=11% Similarity=0.077 Sum_probs=76.7
Q ss_pred hhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--ccHHHHHHcCCCCCCEEEEEeC-C
Q psy7943 33 DNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--QHTALAEQYGVRGYPTLKFFKK-R 109 (142)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~~P~~~i~~~-~ 109 (142)
+.++.+.+++|+++|+|+++||++|+.+...+.....-.+..+.++++..+|.+ +..++...|++.++|+++++++ +
T Consensus 8 ~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~ 87 (114)
T cd02958 8 DAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRT 87 (114)
T ss_pred HHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCcc
Confidence 445556678999999999999999999987644333222212247888888886 5668999999999999999987 4
Q ss_pred c-eEe-eCcccccccccccchHHhhcc
Q psy7943 110 S-IIE-YGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 110 ~-~~~-~~g~~~~~~l~~~~~~~~~~~ 134 (142)
| .+. ..|..+++++ ...++++..
T Consensus 88 g~~l~~~~G~~~~~~f--~~~L~~~~~ 112 (114)
T cd02958 88 GEVLKVWSGNITPEDL--LSQLIEFLE 112 (114)
T ss_pred CcEeEEEcCCCCHHHH--HHHHHHHHh
Confidence 5 444 7899999999 888877653
No 92
>PHA02125 thioredoxin-like protein
Probab=99.53 E-value=4.6e-14 Score=79.94 Aligned_cols=60 Identities=27% Similarity=0.553 Sum_probs=49.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceE-eeCcc
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSII-EYGEV 117 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~-~~~g~ 117 (142)
+++||++||++|+.+.|.+.++ .+.++.+|.+++.++.++|++.++||++ .|+.+ ++.|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~---------~~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~ 62 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV---------EYTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGV 62 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH---------hheEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence 7899999999999999998653 2457899999999999999999999987 34444 46664
No 93
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.53 E-value=8.8e-14 Score=77.03 Aligned_cols=57 Identities=26% Similarity=0.453 Sum_probs=50.8
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEE
Q psy7943 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i 105 (142)
-++.|+++||++|+.+.+.++++++.. ..+.+..+|.++++++.++|++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 478899999999999999999987654 368899999999999999999999999876
No 94
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.50 E-value=2.2e-13 Score=82.40 Aligned_cols=79 Identities=29% Similarity=0.541 Sum_probs=63.0
Q ss_pred hhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc-----------------------H
Q psy7943 33 DNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH-----------------------T 89 (142)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~ 89 (142)
+.+.....++++++++||++||++|+...+.+.++.+.+.. .++.++.++.+.+ .
T Consensus 10 ~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (116)
T cd02966 10 KPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG 87 (116)
T ss_pred CEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcc
Confidence 33444333589999999999999999999999999988863 3566777776664 6
Q ss_pred HHHHHcCCCCCCEEEEEeCCceEe
Q psy7943 90 ALAEQYGVRGYPTLKFFKKRSIIE 113 (142)
Q Consensus 90 ~~~~~~~i~~~P~~~i~~~~~~~~ 113 (142)
++.+.|++.++|++++++++|.+.
T Consensus 88 ~~~~~~~~~~~P~~~l~d~~g~v~ 111 (116)
T cd02966 88 ELAKAYGVRGLPTTFLIDRDGRIR 111 (116)
T ss_pred hHHHhcCcCccceEEEECCCCcEE
Confidence 789999999999999999776443
No 95
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.3e-13 Score=84.31 Aligned_cols=95 Identities=19% Similarity=0.249 Sum_probs=73.0
Q ss_pred hHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc----------------cHHHHHHcCC
Q psy7943 34 NFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ----------------HTALAEQYGV 97 (142)
Q Consensus 34 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------~~~~~~~~~i 97 (142)
+...+...++..++.|.++.|++|..+...+....+-.+....++.++.+|+.. .++++++|++
T Consensus 34 d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 34 DNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred HHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 344455679999999999999999999998766554333333578888888742 2489999999
Q ss_pred CCCCEEEEEeCCc--eEeeCcccccccccccchHH
Q psy7943 98 RGYPTLKFFKKRS--IIEYGEVTSVEYCYQRNWHK 130 (142)
Q Consensus 98 ~~~P~~~i~~~~~--~~~~~g~~~~~~l~~~~~~~ 130 (142)
+++|++++|++.| ....+|..+++++ ...++
T Consensus 114 rstPtfvFfdk~Gk~Il~lPGY~ppe~F--l~vlk 146 (182)
T COG2143 114 RSTPTFVFFDKTGKTILELPGYMPPEQF--LAVLK 146 (182)
T ss_pred ccCceEEEEcCCCCEEEecCCCCCHHHH--HHHHH
Confidence 9999999999876 4447899998888 55443
No 96
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.49 E-value=3.8e-13 Score=85.41 Aligned_cols=86 Identities=27% Similarity=0.444 Sum_probs=67.2
Q ss_pred eChhhHHHhhhcCCcEEEEEECC-CChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-------------------ccH
Q psy7943 30 LTQDNFQSSIEKHDHILVEFYAP-WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-------------------QHT 89 (142)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------~~~ 89 (142)
.+.+.+....-++++++|+||++ |||+|+...|.+.++.+.+...+..+..+..+-+ .+.
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~ 95 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDG 95 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTS
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHH
Confidence 44444444446899999999999 9999999999999999988765555555555543 234
Q ss_pred HHHHHcCCC---------CCCEEEEEeCCceEeeC
Q psy7943 90 ALAEQYGVR---------GYPTLKFFKKRSIIEYG 115 (142)
Q Consensus 90 ~~~~~~~i~---------~~P~~~i~~~~~~~~~~ 115 (142)
++.+.|++. ++|++++++++|.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~ 130 (146)
T PF08534_consen 96 ALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYR 130 (146)
T ss_dssp HHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEE
T ss_pred HHHHHhCCccccccccCCeecEEEEEECCCEEEEE
Confidence 788999988 99999999999877643
No 97
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.49 E-value=8.4e-14 Score=86.01 Aligned_cols=78 Identities=10% Similarity=0.140 Sum_probs=55.2
Q ss_pred hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCc
Q psy7943 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS 110 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~ 110 (142)
++.+..+.+++|+++|+|+++||++|+++...+....+.....+.+++.+.+|.+....-....+ .++|++++++++|
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g 90 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSL 90 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCC
Confidence 55566677889999999999999999999998665443332222467777787653211111234 6899999999877
No 98
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.47 E-value=3.5e-13 Score=77.56 Aligned_cols=73 Identities=29% Similarity=0.509 Sum_probs=55.6
Q ss_pred hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHH---HHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC
Q psy7943 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKA---ALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~ 108 (142)
++.+.++.+++++++|+|+++||++|+.+...+... .+.+. .+++.+.+|.+......+..+ +++|+++++++
T Consensus 7 ~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~---~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 7 EEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN---KNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp HHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH---HCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH---CCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 455667778999999999999999999999987443 33233 589999999986654332222 67999999874
No 99
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.46 E-value=9.4e-13 Score=81.44 Aligned_cols=109 Identities=11% Similarity=0.092 Sum_probs=94.8
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECC--CChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEE
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAP--WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTL 103 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~ 103 (142)
++..++..+++..+..+...++.|-++ -++.+....-.+.++++.|.+ ..+.++++|.++++++..+|||.++||+
T Consensus 18 g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDiD~~~~LA~~fgV~siPTL 95 (132)
T PRK11509 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADLEQSEAIGDRFGVFRFPAT 95 (132)
T ss_pred CCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEECCCCHHHHHHcCCccCCEE
Confidence 566677788888888888888877766 678888889999999999962 3599999999999999999999999999
Q ss_pred EEEeCCceEe-eCcccccccccccchHHhhccceee
Q psy7943 104 KFFKKRSIIE-YGEVTSVEYCYQRNWHKRAVTSVII 138 (142)
Q Consensus 104 ~i~~~~~~~~-~~g~~~~~~l~~~~~~~~~~~~~~~ 138 (142)
++|++|+.+. ..|..+.+++ .+++.++++...-
T Consensus 96 l~FkdGk~v~~i~G~~~k~~l--~~~I~~~L~~~~~ 129 (132)
T PRK11509 96 LVFTGGNYRGVLNGIHPWAEL--INLMRGLVEPQQE 129 (132)
T ss_pred EEEECCEEEEEEeCcCCHHHH--HHHHHHHhcCcCc
Confidence 9999999887 8899999999 9999999877543
No 100
>KOG0191|consensus
Probab=99.46 E-value=3.3e-13 Score=98.19 Aligned_cols=108 Identities=41% Similarity=0.745 Sum_probs=95.8
Q ss_pred cEEEeChhhHHHhh-hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEE
Q psy7943 26 GVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104 (142)
Q Consensus 26 ~~~~~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~ 104 (142)
.+..+...++.... +....++|.||+|||++|+.+.|.+.+++..+.. ...+.++.+|++....++.++++.++|++.
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATVHKSLASRLEVRGYPTLK 223 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccchHHHHhhhhcccCCceEE
Confidence 37778888888854 5678899999999999999999999999998875 578999999999999999999999999999
Q ss_pred EEeCCce-Ee-eCcccccccccccchHHhhccce
Q psy7943 105 FFKKRSI-IE-YGEVTSVEYCYQRNWHKRAVTSV 136 (142)
Q Consensus 105 i~~~~~~-~~-~~g~~~~~~l~~~~~~~~~~~~~ 136 (142)
+|++|.. .. +.|.++.+.+ ..|+.+.....
T Consensus 224 ~f~~~~~~~~~~~~~R~~~~i--~~~v~~~~~~~ 255 (383)
T KOG0191|consen 224 LFPPGEEDIYYYSGLRDSDSI--VSFVEKKERRN 255 (383)
T ss_pred EecCCCcccccccccccHHHH--HHHHHhhcCCC
Confidence 9999887 44 8899999999 99999887763
No 101
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.46 E-value=5.1e-13 Score=82.94 Aligned_cols=71 Identities=17% Similarity=0.372 Sum_probs=56.9
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc---------------------------ccHHHHH
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT---------------------------QHTALAE 93 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~---------------------------~~~~~~~ 93 (142)
++++++|+||++||++|++..|.++++.+.+.+. ++.++.++.+ .+.++.+
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 99 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR 99 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence 7899999999999999999999999999999853 4555555321 1235677
Q ss_pred HcCCCCCCEEEEEeCCceEe
Q psy7943 94 QYGVRGYPTLKFFKKRSIIE 113 (142)
Q Consensus 94 ~~~i~~~P~~~i~~~~~~~~ 113 (142)
.|++.++|++++++++|.+.
T Consensus 100 ~~~v~~~P~~~vid~~G~v~ 119 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVR 119 (126)
T ss_pred HhCCCcCCeEEEECCCCcEE
Confidence 89999999999999877555
No 102
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.45 E-value=3.2e-13 Score=100.18 Aligned_cols=101 Identities=26% Similarity=0.411 Sum_probs=80.6
Q ss_pred EEeChh-hHHHhhhcCC--cEEEEEECCCChhhhhhhHHHH-HHHHHHhcCCCceEEEEeecccc----HHHHHHcCCCC
Q psy7943 28 LVLTQD-NFQSSIEKHD--HILVEFYAPWCGHCKQLVPEYS-KAALQLATDGHDIKLAKVDATQH----TALAEQYGVRG 99 (142)
Q Consensus 28 ~~~~~~-~~~~~~~~~~--~~vv~f~~~~C~~C~~~~~~~~-~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~i~~ 99 (142)
..++.. .+++.+.+++ +++++||++||-.||.+++... +.....+ -.+++....|.+++ .++.++|++-+
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~--~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA--LQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh--cCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 555555 7888777665 9999999999999999999866 3333333 24899999999764 57899999999
Q ss_pred CCEEEEEeCCc-eEe-eCcccccccccccchHHhh
Q psy7943 100 YPTLKFFKKRS-IIE-YGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 100 ~P~~~i~~~~~-~~~-~~g~~~~~~l~~~~~~~~~ 132 (142)
.|++++|+.++ +.. ..|..+.+.+ .+++++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~--~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAF--LEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHH--HHHHHHh
Confidence 99999999655 333 8899999999 8888765
No 103
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.45 E-value=6.7e-13 Score=77.44 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=62.4
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEeeCccccc
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSV 120 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~ 120 (142)
+++..+..|+++||++|....+.+.++++.+. ++.+..+|.++..++.++|++.++|++++ +| ...+.|..+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG-~~~~~G~~~~ 83 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALFQDEVEERGIMSVPAIFL--NG-ELFGFGRMTL 83 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhCHHHHHHcCCccCCEEEE--CC-EEEEeCCCCH
Confidence 46668888999999999999999999998764 68899999999999999999999999976 44 3444575554
Q ss_pred ccc
Q psy7943 121 EYC 123 (142)
Q Consensus 121 ~~l 123 (142)
+++
T Consensus 84 ~e~ 86 (89)
T cd03026 84 EEI 86 (89)
T ss_pred HHH
Confidence 444
No 104
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.44 E-value=4e-13 Score=107.85 Aligned_cols=90 Identities=13% Similarity=0.280 Sum_probs=71.4
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEee-----c----------------------cccHHHHH
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVD-----A----------------------TQHTALAE 93 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd-----~----------------------~~~~~~~~ 93 (142)
++|+++|+||++||++|+...|.+.++.+.+++. ++.++.+. . +.+.++.+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 6899999999999999999999999999998743 45555552 2 12345778
Q ss_pred HcCCCCCCEEEEEeCCceE--eeCcccccccccccchHHhhcc
Q psy7943 94 QYGVRGYPTLKFFKKRSII--EYGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 94 ~~~i~~~P~~~i~~~~~~~--~~~g~~~~~~l~~~~~~~~~~~ 134 (142)
+|++.++|++++++++|.+ ++.|....+++ .+++.+.+.
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l--~~~l~~~l~ 537 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDL--DDLVEAALQ 537 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecccCHHHH--HHHHHHHHH
Confidence 8999999999999765533 37888888888 888887754
No 105
>smart00594 UAS UAS domain.
Probab=99.43 E-value=6.7e-13 Score=81.98 Aligned_cols=96 Identities=8% Similarity=0.056 Sum_probs=71.4
Q ss_pred hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--ccHHHHHHcCCCCCCEEEEEeCC
Q psy7943 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--QHTALAEQYGVRGYPTLKFFKKR 109 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~~P~~~i~~~~ 109 (142)
.+..+.+.+++|.++|+|+++||++|+.+...+....+-..-.+.++++..+|.+ +..++..+|+++++|+++++++.
T Consensus 17 ~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~ 96 (122)
T smart00594 17 EAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPR 96 (122)
T ss_pred HHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecC
Confidence 3444556677999999999999999999998755544333222347888777765 45679999999999999999876
Q ss_pred c------eE-eeCcccccccccccchH
Q psy7943 110 S------II-EYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 110 ~------~~-~~~g~~~~~~l~~~~~~ 129 (142)
+ .+ +..|..+++++ ...+
T Consensus 97 ~g~~~~~~~~~~~G~~~~~~l--~~~l 121 (122)
T smart00594 97 TGQRVIEWVGVVEGEISPEEL--MTFL 121 (122)
T ss_pred CCceeEEEeccccCCCCHHHH--HHhh
Confidence 5 22 36788888887 6554
No 106
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.42 E-value=1.2e-12 Score=88.88 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=71.5
Q ss_pred EEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-----------ccHHHH-HH
Q psy7943 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-----------QHTALA-EQ 94 (142)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-----------~~~~~~-~~ 94 (142)
+...+++.+....-++++++|+||++||++|+...|.+.++.+.+.+.+ +.++.++++ +..++. ++
T Consensus 84 l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~~ei~~f~~~~ 161 (236)
T PLN02399 84 VKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKQFACTR 161 (236)
T ss_pred EECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCHHHHHHHHHHh
Confidence 3344444444433468999999999999999999999999999998653 555555432 112222 22
Q ss_pred cCC----------------------------------CCCCEEEEEeCCceEe--eCcccccccccccchHHhhcc
Q psy7943 95 YGV----------------------------------RGYPTLKFFKKRSIIE--YGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 95 ~~i----------------------------------~~~P~~~i~~~~~~~~--~~g~~~~~~l~~~~~~~~~~~ 134 (142)
+++ ...|+.++++.+|.+. +.|..+++++ .+.+++.++
T Consensus 162 ~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~l--e~~I~~lL~ 235 (236)
T PLN02399 162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQI--EKDIQKLLA 235 (236)
T ss_pred cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHH--HHHHHHHhc
Confidence 221 2358899998888443 7898888888 888877653
No 107
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.40 E-value=1.9e-12 Score=86.31 Aligned_cols=106 Identities=10% Similarity=0.081 Sum_probs=71.4
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-----------ccHHHHHH
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-----------QHTALAEQ 94 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-----------~~~~~~~~ 94 (142)
.+...+++.+....-++++++|+||++||++|+...|.+.++.+.+.+. ++.++.++++ +..++.++
T Consensus 23 ~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~--g~~vvgv~~~~~~~~e~d~~e~~~~f~~~ 100 (199)
T PTZ00056 23 TVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL--GLEILAFPTSQFLNQEFPNTKDIRKFNDK 100 (199)
T ss_pred EEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC--ceEEEEecchhccCCCCCCHHHHHHHHHH
Confidence 3344444444443346899999999999999999999999999999854 4555666542 22344444
Q ss_pred cCCC------------------------------------CC---CEEEEEeCCceE-e-eCcccccccccccchHHhhc
Q psy7943 95 YGVR------------------------------------GY---PTLKFFKKRSII-E-YGEVTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 95 ~~i~------------------------------------~~---P~~~i~~~~~~~-~-~~g~~~~~~l~~~~~~~~~~ 133 (142)
++++ .+ |+.++++.+|.+ . +.|..+.+++ .+.+.+.+
T Consensus 101 ~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l--~~~I~~ll 178 (199)
T PTZ00056 101 NKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLEL--EKKIAELL 178 (199)
T ss_pred cCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHH--HHHHHHHH
Confidence 4431 12 257788877744 3 6777787888 77787776
Q ss_pred cc
Q psy7943 134 TS 135 (142)
Q Consensus 134 ~~ 135 (142)
+.
T Consensus 179 ~~ 180 (199)
T PTZ00056 179 GV 180 (199)
T ss_pred HH
Confidence 54
No 108
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.37 E-value=1.3e-11 Score=86.35 Aligned_cols=117 Identities=20% Similarity=0.282 Sum_probs=84.9
Q ss_pred CCCCCCcEEEeChhhHHHhhhcCCcEEEEEECCCCh--hhhhh---hHHHHHHHHHHhcCCCceEEEEeeccccHHHHHH
Q psy7943 20 DVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCG--HCKQL---VPEYSKAALQLATDGHDIKLAKVDATQHTALAEQ 94 (142)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~--~C~~~---~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~ 94 (142)
.+.....+..++..||.+++++.+..+|+||.+.-. ..++. ...+.+++.+.-. ..++.|+.||..++.+++++
T Consensus 29 ~YDGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE-~~gigfg~VD~~Kd~klAKK 107 (383)
T PF01216_consen 29 EYDGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLE-DKGIGFGMVDSKKDAKLAKK 107 (383)
T ss_dssp S-SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCG-GCTEEEEEEETTTTHHHHHH
T ss_pred cCCCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhcc-ccCcceEEeccHHHHHHHHh
Confidence 355567899999999999999999999999998632 22221 2334455544431 35899999999999999999
Q ss_pred cCCCCCCEEEEEeCCceEeeCcccccccccccchHHhhccceeee
Q psy7943 95 YGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRAVTSVIIR 139 (142)
Q Consensus 95 ~~i~~~P~~~i~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~ 139 (142)
+|+...+++++|.+|..+.|.|.++++.+ ..|+...+..++..
T Consensus 108 Lgv~E~~SiyVfkd~~~IEydG~~saDtL--VeFl~dl~edPVei 150 (383)
T PF01216_consen 108 LGVEEEGSIYVFKDGEVIEYDGERSADTL--VEFLLDLLEDPVEI 150 (383)
T ss_dssp HT--STTEEEEEETTEEEEE-S--SHHHH--HHHHHHHHSSSEEE
T ss_pred cCccccCcEEEEECCcEEEecCccCHHHH--HHHHHHhcccchhh
Confidence 99999999999999999999999999999 99999999876643
No 109
>PLN02412 probable glutathione peroxidase
Probab=99.33 E-value=6.5e-12 Score=81.62 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=71.0
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--------ccHH----HHH
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--------QHTA----LAE 93 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--------~~~~----~~~ 93 (142)
.....+++.+....-++++++|+||++||++|+...|.+.++.+.+.+. ++.++.++++ ...+ +.+
T Consensus 13 ~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~~~~~~~~~~~~~ 90 (167)
T PLN02412 13 TVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEPGSNEEIQQTVCT 90 (167)
T ss_pred EEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCCCCHHHHHHHHHH
Confidence 3334444444333336899999999999999999999999999999865 3555555432 1111 112
Q ss_pred HcC----------------------------------CCCCCEEEEEeCCceEe--eCcccccccccccchHHhhcc
Q psy7943 94 QYG----------------------------------VRGYPTLKFFKKRSIIE--YGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 94 ~~~----------------------------------i~~~P~~~i~~~~~~~~--~~g~~~~~~l~~~~~~~~~~~ 134 (142)
+++ +...|+.++++.+|.+. +.|..+.+++ .+.+.+.++
T Consensus 91 ~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l--~~~i~~~l~ 165 (167)
T PLN02412 91 RFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKI--EKDIQNLLG 165 (167)
T ss_pred ccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHH--HHHHHHHHh
Confidence 211 33458889998777443 7888888888 888877764
No 110
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.32 E-value=1.4e-11 Score=80.35 Aligned_cols=93 Identities=14% Similarity=0.220 Sum_probs=68.1
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc---------------------------ccHHHHH
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT---------------------------QHTALAE 93 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~---------------------------~~~~~~~ 93 (142)
++++++++||++||+.|....+.+.++.+.+...+..+..+.+|-. .+..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 7899999999999999999999999999998754334444444321 1235678
Q ss_pred HcCCCCCCEEEEEeCCceEeeCccc-----------ccccccccchHHhhccc
Q psy7943 94 QYGVRGYPTLKFFKKRSIIEYGEVT-----------SVEYCYQRNWHKRAVTS 135 (142)
Q Consensus 94 ~~~i~~~P~~~i~~~~~~~~~~g~~-----------~~~~l~~~~~~~~~~~~ 135 (142)
.|++...|++++++++|.+.+.+.. +.+++ .+.+...+..
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~l~~ 154 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDL--RAALDALLAG 154 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHH--HHHHHHHHcC
Confidence 8999999999999988877765422 33556 6666665543
No 111
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.29 E-value=3e-11 Score=76.07 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=62.9
Q ss_pred hcCCcEEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-------------------ccHHHHHHcCCCC
Q psy7943 40 EKHDHILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-------------------QHTALAEQYGVRG 99 (142)
Q Consensus 40 ~~~~~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------~~~~~~~~~~i~~ 99 (142)
-++++++|+|| +.||+.|....+.+.++.+.+...+..+..+.+|-. .+..+.+.|++..
T Consensus 21 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 21 LRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred hCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 35899999999 589999999999999999888754444444444421 2346788899888
Q ss_pred C---------CEEEEEeCCceEe--eCcccccccc
Q psy7943 100 Y---------PTLKFFKKRSIIE--YGEVTSVEYC 123 (142)
Q Consensus 100 ~---------P~~~i~~~~~~~~--~~g~~~~~~l 123 (142)
. |++++++++|.+. +.|....+.+
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~ 135 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHA 135 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEecCCccchH
Confidence 7 8999999877554 6677666665
No 112
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.29 E-value=1.5e-11 Score=78.74 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=38.4
Q ss_pred hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEee
Q psy7943 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVD 84 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd 84 (142)
++.+....-++++++|+||++||+ |+...|.+.++.+.+++. ++.++.++
T Consensus 12 G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~ 61 (152)
T cd00340 12 GEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFP 61 (152)
T ss_pred CCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEec
Confidence 333333333689999999999999 999999999999999754 45565554
No 113
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.29 E-value=1e-11 Score=76.55 Aligned_cols=74 Identities=20% Similarity=0.490 Sum_probs=60.0
Q ss_pred cCCcEEEEEECC-CChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-------------------ccHHHHHHcCCC--
Q psy7943 41 KHDHILVEFYAP-WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-------------------QHTALAEQYGVR-- 98 (142)
Q Consensus 41 ~~~~~vv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------~~~~~~~~~~i~-- 98 (142)
++++++|+||+. ||+.|+...+.+.++.+.++..+..+..+..|.. .+.++.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 789999999999 9999999999999999999855444444444432 234788889998
Q ss_pred ----CCCEEEEEeCCceEee
Q psy7943 99 ----GYPTLKFFKKRSIIEY 114 (142)
Q Consensus 99 ----~~P~~~i~~~~~~~~~ 114 (142)
.+|++++++++|.++|
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 8999999999998775
No 114
>KOG0914|consensus
Probab=99.29 E-value=2.1e-11 Score=80.26 Aligned_cols=97 Identities=18% Similarity=0.403 Sum_probs=78.4
Q ss_pred HHhhccCCCCCCcEEEe-ChhhHHHhhh--cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHH
Q psy7943 14 LVVFADDVTEEDGVLVL-TQDNFQSSIE--KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA 90 (142)
Q Consensus 14 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~ 90 (142)
+.+-...+..+..+..+ +.+.++..+. +.+.++|.|++.|-+.|+...|.+.+++..|.. ....|+++|++.-..
T Consensus 113 ml~~eP~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~--~~lkFGkvDiGrfpd 190 (265)
T KOG0914|consen 113 MLAPEPAYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN--NLLKFGKVDIGRFPD 190 (265)
T ss_pred HhcCccccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC--CCCcccceeeccCcC
Confidence 33333446666677777 5555666553 567799999999999999999999999999974 589999999999999
Q ss_pred HHHHcCCC------CCCEEEEEeCCceE
Q psy7943 91 LAEQYGVR------GYPTLKFFKKRSII 112 (142)
Q Consensus 91 ~~~~~~i~------~~P~~~i~~~~~~~ 112 (142)
...+|+|. ..||+++|.+|+++
T Consensus 191 ~a~kfris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 191 VAAKFRISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred hHHheeeccCcccccCCeEEEEccchhh
Confidence 99999885 68999999999844
No 115
>KOG2501|consensus
Probab=99.28 E-value=1.8e-11 Score=77.19 Aligned_cols=77 Identities=21% Similarity=0.443 Sum_probs=60.6
Q ss_pred hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCc--eEEEEeecccc-----------------------HHHHHH
Q psy7943 40 EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHD--IKLAKVDATQH-----------------------TALAEQ 94 (142)
Q Consensus 40 ~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~--~~~~~vd~~~~-----------------------~~~~~~ 94 (142)
-.||++.+||.+.||++|+.+.|.+.+..++....+.. ++|+.-|-++. ++++++
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 36899999999999999999999999999998765444 55555554321 378899
Q ss_pred cCCCCCCEEEEEeCCc-eEeeCc
Q psy7943 95 YGVRGYPTLKFFKKRS-IIEYGE 116 (142)
Q Consensus 95 ~~i~~~P~~~i~~~~~-~~~~~g 116 (142)
|++.++|++++++++| .+.-.|
T Consensus 111 y~v~~iP~l~i~~~dG~~v~~d~ 133 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVVTEDA 133 (157)
T ss_pred cccCcCceeEEecCCCCEehHhh
Confidence 9999999999998877 443333
No 116
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.28 E-value=2.7e-11 Score=77.60 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=65.3
Q ss_pred hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeec--------c---ccHHHHHH-cCC--
Q psy7943 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA--------T---QHTALAEQ-YGV-- 97 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~--------~---~~~~~~~~-~~i-- 97 (142)
++.+....-+||+++|+||++||++|+...|.+.++.+.+.+. ++.++.+++ + ...++.++ +++
T Consensus 12 G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~f 89 (153)
T TIGR02540 12 GRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTF 89 (153)
T ss_pred CCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCC
Confidence 3334333347899999999999999999999999999999854 455665553 1 11223322 222
Q ss_pred ------------------------CCCCE----EEEEeCCceEe--eCcccccccccccchHHhh
Q psy7943 98 ------------------------RGYPT----LKFFKKRSIIE--YGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 98 ------------------------~~~P~----~~i~~~~~~~~--~~g~~~~~~l~~~~~~~~~ 132 (142)
...|+ .++++++|.+. +.|..+.+++ .+.+++.
T Consensus 90 p~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l--~~~i~~l 152 (153)
T TIGR02540 90 PMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEI--RPEITAL 152 (153)
T ss_pred CccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHH--HHHHHHh
Confidence 13676 78887777443 7888888888 6666543
No 117
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.27 E-value=1.3e-11 Score=78.88 Aligned_cols=94 Identities=14% Similarity=0.252 Sum_probs=62.1
Q ss_pred CCCCCcEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHc-----
Q psy7943 21 VTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQY----- 95 (142)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----- 95 (142)
...+-.+...+++.++.+.+++|+++|.++.+||++|..|....-+..+.-.-.+.+++-+++|.++.+.+...|
T Consensus 16 a~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~ 95 (163)
T PF03190_consen 16 AHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQ 95 (163)
T ss_dssp TTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHH
T ss_pred ccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHH
Confidence 344556778888999999999999999999999999999997533333222222258999999999999888888
Q ss_pred ---CCCCCCEEEEEeCCceEee
Q psy7943 96 ---GVRGYPTLKFFKKRSIIEY 114 (142)
Q Consensus 96 ---~i~~~P~~~i~~~~~~~~~ 114 (142)
|..++|+.+++.+++..-+
T Consensus 96 ~~~~~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 96 AMSGSGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp HHHS---SSEEEEE-TTS-EEE
T ss_pred HhcCCCCCCceEEECCCCCeee
Confidence 7889999999999885544
No 118
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.14 E-value=4.6e-10 Score=73.33 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=56.8
Q ss_pred cCCcEEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--------------------------ccHHHHH
Q psy7943 41 KHDHILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--------------------------QHTALAE 93 (142)
Q Consensus 41 ~~~~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--------------------------~~~~~~~ 93 (142)
++++++|+|| +.||++|....+.+.++.+.+.+.+..+..+.+|-. ...++.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 6799999999 899999999999999999999865455555555432 1225667
Q ss_pred HcCCC------CCCEEEEEeCCceEee
Q psy7943 94 QYGVR------GYPTLKFFKKRSIIEY 114 (142)
Q Consensus 94 ~~~i~------~~P~~~i~~~~~~~~~ 114 (142)
.|++. ..|++++++++|.+.+
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~ 134 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRH 134 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEE
Confidence 78875 5789999998886653
No 119
>KOG0913|consensus
Probab=99.13 E-value=2.1e-11 Score=81.03 Aligned_cols=104 Identities=22% Similarity=0.442 Sum_probs=90.4
Q ss_pred CCCcEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCE
Q psy7943 23 EEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPT 102 (142)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~ 102 (142)
....+..+++++|...+. .-+++.|+++|||.|+...+.+...+.--.+ ..+....+|...+..+.-+|-++..||
T Consensus 22 r~s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt~npgLsGRF~vtaLpt 97 (248)
T KOG0913|consen 22 RSSKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVTTNPGLSGRFLVTALPT 97 (248)
T ss_pred ccceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEEeccccceeeEEEecce
Confidence 344788899999988763 4478899999999999999999998776554 578999999999999999999999999
Q ss_pred EEEEeCCceEeeCcccccccccccchHHhh
Q psy7943 103 LKFFKKRSIIEYGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 103 ~~i~~~~~~~~~~g~~~~~~l~~~~~~~~~ 132 (142)
++-..+|.--+|.|.++..++ +.++...
T Consensus 98 IYHvkDGeFrrysgaRdk~df--isf~~~r 125 (248)
T KOG0913|consen 98 IYHVKDGEFRRYSGARDKNDF--ISFEEHR 125 (248)
T ss_pred EEEeeccccccccCcccchhH--HHHHHhh
Confidence 999999888789999999999 9888765
No 120
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.11 E-value=4.9e-10 Score=73.87 Aligned_cols=102 Identities=10% Similarity=0.052 Sum_probs=64.9
Q ss_pred EEeChhhHHHhhhcCCcE-EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-----c------cHHH-HHH
Q psy7943 28 LVLTQDNFQSSIEKHDHI-LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-----Q------HTAL-AEQ 94 (142)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~-vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-----~------~~~~-~~~ 94 (142)
...+++.+....-+++++ ++.+|++||++|++..|.+.++.+.+++. ++.++.++++ + ..++ .++
T Consensus 26 ~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~ 103 (183)
T PTZ00256 26 IDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCNQFMEQEPWDEPEIKEYVQKK 103 (183)
T ss_pred EcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecccccccCCCCHHHHHHHHHHh
Confidence 344444444433467765 45569999999999999999999999854 4555555431 0 0011 111
Q ss_pred ------------------------------------cCCCCCCE---EEEEeCCceEe--eCcccccccccccchHHhhc
Q psy7943 95 ------------------------------------YGVRGYPT---LKFFKKRSIIE--YGEVTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 95 ------------------------------------~~i~~~P~---~~i~~~~~~~~--~~g~~~~~~l~~~~~~~~~~ 133 (142)
+++.++|+ .++++.+|.+. +.|..+.+.+ .+.+.+.+
T Consensus 104 ~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l--~~~I~~ll 181 (183)
T PTZ00256 104 FNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEM--IQDIEKLL 181 (183)
T ss_pred cCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHH--HHHHHHHh
Confidence 13446784 57888777443 6788887777 77776654
No 121
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.10 E-value=9.5e-10 Score=69.77 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=31.5
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 86 (142)
++++++.|++.||++|+...+.+.++.+.+... ++.++.+..+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~ 66 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPE 66 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCC
Confidence 344555556999999999999999999998744 4555555443
No 122
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.07 E-value=1.7e-09 Score=69.26 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=63.8
Q ss_pred EEEeChhhHHHhhhcCCcEEEEEECC-CChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-------------------
Q psy7943 27 VLVLTQDNFQSSIEKHDHILVEFYAP-WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT------------------- 86 (142)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~------------------- 86 (142)
+...+++.+....-++++++|+||+. ||+.|....+.+.++.+.+.+.+..+..+..|-.
T Consensus 15 l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D 94 (154)
T PRK09437 15 LPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSD 94 (154)
T ss_pred eeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEC
Confidence 34444444443334789999999975 7889999999999999988754333444433321
Q ss_pred ccHHHHHHcCCCCC------------CEEEEEeCCceEe--eCcccccccc
Q psy7943 87 QHTALAEQYGVRGY------------PTLKFFKKRSIIE--YGEVTSVEYC 123 (142)
Q Consensus 87 ~~~~~~~~~~i~~~------------P~~~i~~~~~~~~--~~g~~~~~~l 123 (142)
....+.+.|++... |+.++++++|.++ +.|....+.+
T Consensus 95 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~ 145 (154)
T PRK09437 95 EDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHH 145 (154)
T ss_pred CCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhH
Confidence 22357778887643 6778898777554 6776555554
No 123
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.06 E-value=1.8e-09 Score=70.15 Aligned_cols=73 Identities=14% Similarity=0.298 Sum_probs=54.5
Q ss_pred cCCcEEEEEECCC-ChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc---------------------ccHHHHHHcCCC
Q psy7943 41 KHDHILVEFYAPW-CGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT---------------------QHTALAEQYGVR 98 (142)
Q Consensus 41 ~~~~~vv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~---------------------~~~~~~~~~~i~ 98 (142)
++++++|+||+.| |++|....+.+.+..+.+. +..+..+..|-. ....+++.||+.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~ 120 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVA 120 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCe
Confidence 6889999999999 9999999999999888773 233333333321 123678888888
Q ss_pred CCC---------EEEEEeCCceEeeC
Q psy7943 99 GYP---------TLKFFKKRSIIEYG 115 (142)
Q Consensus 99 ~~P---------~~~i~~~~~~~~~~ 115 (142)
..| ++++++++|.+++.
T Consensus 121 ~~~~~~~g~~~r~tfvId~~G~I~~~ 146 (167)
T PRK00522 121 IAEGPLKGLLARAVFVLDENNKVVYS 146 (167)
T ss_pred ecccccCCceeeEEEEECCCCeEEEE
Confidence 777 89999988866643
No 124
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.04 E-value=1.9e-09 Score=71.30 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=58.0
Q ss_pred cCCcEEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-----------------------ccHHHHHHcC
Q psy7943 41 KHDHILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-----------------------QHTALAEQYG 96 (142)
Q Consensus 41 ~~~~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-----------------------~~~~~~~~~~ 96 (142)
++++++|+|| +.||++|....+.+.+..+.+...+..+..+..|-. .+.++.+.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 6889999999 999999999999999999988765555666655531 1336778888
Q ss_pred CC------CCCEEEEEeCCceEee
Q psy7943 97 VR------GYPTLKFFKKRSIIEY 114 (142)
Q Consensus 97 i~------~~P~~~i~~~~~~~~~ 114 (142)
+. ..|+.++++++|.+++
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~ 133 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQA 133 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEE
Confidence 86 4699999998886653
No 125
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.03 E-value=1.9e-09 Score=64.87 Aligned_cols=68 Identities=32% Similarity=0.701 Sum_probs=59.8
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-ccHHHHHHcC--CCCCCEEEEEeCCceE
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-QHTALAEQYG--VRGYPTLKFFKKRSII 112 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~--i~~~P~~~i~~~~~~~ 112 (142)
++++++.||++||++|+...|.+.++.+.+.. .+.+..+|.. ....+...|+ +..+|++.++.++...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 88999999999999999999999999999873 6788888886 7888999999 8999999988777643
No 126
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.03 E-value=3.4e-09 Score=67.40 Aligned_cols=74 Identities=16% Similarity=0.317 Sum_probs=53.1
Q ss_pred cC-CcEEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeec-------------------ccc--HHHHHHcCC
Q psy7943 41 KH-DHILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA-------------------TQH--TALAEQYGV 97 (142)
Q Consensus 41 ~~-~~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~-------------------~~~--~~~~~~~~i 97 (142)
++ ++++|.|| ++||+.|....+.+.++.+.+...+..+..+..|- +.. .++.+.|++
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~ 105 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGV 105 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCC
Confidence 45 88888887 89999999999999999998875444444444442 122 467778888
Q ss_pred CC----C--CEEEEEeCCceEee
Q psy7943 98 RG----Y--PTLKFFKKRSIIEY 114 (142)
Q Consensus 98 ~~----~--P~~~i~~~~~~~~~ 114 (142)
.. . |++++++++|.+.+
T Consensus 106 ~~~~~~~~~~~~~lid~~G~v~~ 128 (149)
T cd03018 106 FDEDLGVAERAVFVIDRDGIIRY 128 (149)
T ss_pred ccccCCCccceEEEECCCCEEEE
Confidence 63 2 38899987776653
No 127
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.03 E-value=3.4e-09 Score=66.99 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=52.5
Q ss_pred cCCcEEEEEECCC-ChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--------------------cc-HHHHHHcCCC
Q psy7943 41 KHDHILVEFYAPW-CGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--------------------QH-TALAEQYGVR 98 (142)
Q Consensus 41 ~~~~~vv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--------------------~~-~~~~~~~~i~ 98 (142)
++++++++||+.| |++|+...+.+.++.+.+. +..+..+.+|.. .. ..+.+.|++.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~ 102 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVL 102 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCe
Confidence 6889999999988 6999999999999988874 233444444321 11 4677788875
Q ss_pred C------CCEEEEEeCCceEe
Q psy7943 99 G------YPTLKFFKKRSIIE 113 (142)
Q Consensus 99 ~------~P~~~i~~~~~~~~ 113 (142)
. .|+.++++++|.++
T Consensus 103 ~~~~~~~~~~~~iid~~G~I~ 123 (143)
T cd03014 103 IKDLGLLARAVFVIDENGKVI 123 (143)
T ss_pred eccCCccceEEEEEcCCCeEE
Confidence 3 68999999877665
No 128
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.02 E-value=3e-09 Score=66.89 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=54.3
Q ss_pred cCCcEEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--------------------ccHHHHHHcCCCC
Q psy7943 41 KHDHILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--------------------QHTALAEQYGVRG 99 (142)
Q Consensus 41 ~~~~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--------------------~~~~~~~~~~i~~ 99 (142)
++++++|+|| +.||+.|....+.+.++.+.+...+..+..+..|-. ....+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 7899999999 789999999999999999988644444555554421 2235667777776
Q ss_pred CC---------EEEEEeCCceEee
Q psy7943 100 YP---------TLKFFKKRSIIEY 114 (142)
Q Consensus 100 ~P---------~~~i~~~~~~~~~ 114 (142)
.| ++++++++|.+.+
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~ 124 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRY 124 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEE
Confidence 65 7888887775553
No 129
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.98 E-value=4.3e-09 Score=56.55 Aligned_cols=60 Identities=42% Similarity=0.801 Sum_probs=49.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHH---HcCCCCCCEEEEEeCC
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAE---QYGVRGYPTLKFFKKR 109 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~i~~~P~~~i~~~~ 109 (142)
++.||++||++|+...+.+.++ . .. +.++.+..+|++......+ .+++.++|+++++++|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-A-LL--NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-H-hh--CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 2 22 2478888888887766554 7899999999999877
No 130
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.97 E-value=2.3e-09 Score=59.87 Aligned_cols=68 Identities=19% Similarity=0.380 Sum_probs=47.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH----HHHHHcCCCCCCEEEEEeCCceEeeCcccccc
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT----ALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVE 121 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~ 121 (142)
+..|+++||++|++..+.+.+ .++.+..+|.+++. ++.+.+++.++|++++. |.. ..| .+++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~---------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g-~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS---------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVG-FDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH---------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--Eee-CCHH
Confidence 567999999999999887765 14556666766544 35677999999999874 322 444 4566
Q ss_pred cccccchH
Q psy7943 122 YCYQRNWH 129 (142)
Q Consensus 122 ~l~~~~~~ 129 (142)
.+ .+++
T Consensus 68 ~i--~~~i 73 (74)
T TIGR02196 68 KL--DQLL 73 (74)
T ss_pred HH--HHHh
Confidence 77 6554
No 131
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.97 E-value=5.7e-09 Score=59.08 Aligned_cols=71 Identities=27% Similarity=0.460 Sum_probs=52.1
Q ss_pred EECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEeeCc-ccccccccccc
Q psy7943 49 FYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGE-VTSVEYCYQRN 127 (142)
Q Consensus 49 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g-~~~~~~l~~~~ 127 (142)
+++++|++|..+...+.+....+. +..-..|....+++ .+||+.++|++++ +|.+.+.| ..+.+++ .+
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~~~~~~~-~~ygv~~vPalvI---ng~~~~~G~~p~~~el--~~ 73 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDIEDFEEI-EKYGVMSVPALVI---NGKVVFVGRVPSKEEL--KE 73 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEETTTHHHH-HHTT-SSSSEEEE---TTEEEEESS--HHHHH--HH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEccCHHHH-HHcCCCCCCEEEE---CCEEEEEecCCCHHHH--HH
Confidence 368889999999998888877663 33455556556666 9999999999966 46777888 7788888 77
Q ss_pred hHH
Q psy7943 128 WHK 130 (142)
Q Consensus 128 ~~~ 130 (142)
|++
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 764
No 132
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.95 E-value=6.2e-09 Score=70.18 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=67.2
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc---------ccHHHHHHcCCCCCCEEEEEeCCc-
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT---------QHTALAEQYGVRGYPTLKFFKKRS- 110 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~---------~~~~~~~~~~i~~~P~~~i~~~~~- 110 (142)
.++..+++||.+.|++|+.+.|.+..+++.+. -.+..+.+|.. .+..+.+++++..+|++++++.++
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg---~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG---FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK 195 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC---CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence 47889999999999999999999999999996 57777777743 357889999999999999998866
Q ss_pred -eEe-eCcccccccc
Q psy7943 111 -IIE-YGEVTSVEYC 123 (142)
Q Consensus 111 -~~~-~~g~~~~~~l 123 (142)
... ..|..+.++|
T Consensus 196 ~~~pv~~G~~s~~~L 210 (215)
T PF13728_consen 196 KWYPVSQGFMSLDEL 210 (215)
T ss_pred eEEEEeeecCCHHHH
Confidence 222 5688888877
No 133
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.94 E-value=1e-08 Score=67.67 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=64.3
Q ss_pred cCCcEEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeec-----------------------cccHHHHHHcC
Q psy7943 41 KHDHILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA-----------------------TQHTALAEQYG 96 (142)
Q Consensus 41 ~~~~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~ 96 (142)
+++.++++|| +.||+.|....+.+.+..+++...+..+..+..|- +.+.++++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 6789999999 99999999999999999999875444444444433 12457888999
Q ss_pred C----CCC--CEEEEEeCCceEeeC------cccccccccccchHHhh
Q psy7943 97 V----RGY--PTLKFFKKRSIIEYG------EVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 97 i----~~~--P~~~i~~~~~~~~~~------g~~~~~~l~~~~~~~~~ 132 (142)
+ .+. |+.++++++|.+++. ..++.+++ .+.+...
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~ei--l~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDL--LRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHH--HHHHHhh
Confidence 8 356 999999988866532 22355666 5555433
No 134
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.93 E-value=6e-09 Score=65.66 Aligned_cols=55 Identities=25% Similarity=0.318 Sum_probs=40.1
Q ss_pred eChhhHHHhhhcCCcEEEEEECCCChh-hhhhhHHHHHHHHHHhcCC---CceEEEEee
Q psy7943 30 LTQDNFQSSIEKHDHILVEFYAPWCGH-CKQLVPEYSKAALQLATDG---HDIKLAKVD 84 (142)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~-C~~~~~~~~~~~~~~~~~~---~~~~~~~vd 84 (142)
.++..+.....++++++|+||++||++ |....+.+.++.+.+...+ ..+.++..|
T Consensus 10 ~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 10 QDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 333333332237899999999999998 9999999999999997543 345555554
No 135
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.93 E-value=2e-08 Score=67.48 Aligned_cols=66 Identities=21% Similarity=0.390 Sum_probs=40.9
Q ss_pred CchHHH-HHHHHHHHHhhccCCCCCCcEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHH---HHHHHHHh
Q psy7943 1 MRRLSL-LFLLISPLVVFADDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEY---SKAALQLA 72 (142)
Q Consensus 1 Mk~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~~~~~~~ 72 (142)
||++.+ ++++++++.+.++.+..+..+..++..- .+++.||.|++..||+|..+++.+ ..+.+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~Y~~~~~p~------~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~ 70 (207)
T PRK10954 1 MKKIWLALAGMVLAFSASAAQFTDGKQYTTLDKPV------AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP 70 (207)
T ss_pred CchHHHHHHHHHHHhhcchhhccCCceeEEecCcC------CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCC
Confidence 777744 3223332333333344444455544331 367889999999999999999876 66666665
No 136
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.92 E-value=6.5e-09 Score=69.56 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=65.3
Q ss_pred cCCcEEE-EEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeec-------------------------cccHHHHHH
Q psy7943 41 KHDHILV-EFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA-------------------------TQHTALAEQ 94 (142)
Q Consensus 41 ~~~~~vv-~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~-------------------------~~~~~~~~~ 94 (142)
+++.+++ .||++||+.|....+.+.+..+.++..+..+..+.+|- +.+.++.+.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 5776655 68999999999999999999988876544555554442 123467788
Q ss_pred cCCC------CCCEEEEEeCCceEee------CcccccccccccchHHhh
Q psy7943 95 YGVR------GYPTLKFFKKRSIIEY------GEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 95 ~~i~------~~P~~~i~~~~~~~~~------~g~~~~~~l~~~~~~~~~ 132 (142)
||+. .+|++++++++|.+++ .++++.+++ .+.++..
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~el--lr~l~~l 153 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEI--IRITKAL 153 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHH--HHHHHHh
Confidence 8874 4899999999886663 345677777 6666554
No 137
>KOG1672|consensus
Probab=98.91 E-value=4.6e-09 Score=68.20 Aligned_cols=85 Identities=19% Similarity=0.375 Sum_probs=75.8
Q ss_pred CcEEEeC-hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEE
Q psy7943 25 DGVLVLT-QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTL 103 (142)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~ 103 (142)
+.+..+. +.+|-+...++..+|++||-+.-..|+.+..-+..+++.+. ...|+.+|++..+-++.+++|..+|++
T Consensus 66 G~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~----eTrFikvnae~~PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV----ETRFIKVNAEKAPFLVTKLNIKVLPTV 141 (211)
T ss_pred ceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc----cceEEEEecccCceeeeeeeeeEeeeE
Confidence 3444444 77888888899999999999999999999999999999886 789999999999999999999999999
Q ss_pred EEEeCCceEe
Q psy7943 104 KFFKKRSIIE 113 (142)
Q Consensus 104 ~i~~~~~~~~ 113 (142)
.+|.+|....
T Consensus 142 ~l~k~g~~~D 151 (211)
T KOG1672|consen 142 ALFKNGKTVD 151 (211)
T ss_pred EEEEcCEEEE
Confidence 9999998554
No 138
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.91 E-value=1.4e-08 Score=70.29 Aligned_cols=88 Identities=22% Similarity=0.410 Sum_probs=67.0
Q ss_pred CcEEEeC-hhhHHHhhhc---CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCC
Q psy7943 25 DGVLVLT-QDNFQSSIEK---HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGY 100 (142)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~---~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~ 100 (142)
+.+..++ ++.|-.++.+ +..+||+||.+.++.|..+...|..++..|. .+.|+.+...... +..+|....+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp----~vKFvkI~a~~~~-~~~~f~~~~L 199 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP----EVKFVKIRASKCP-ASENFPDKNL 199 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T----TSEEEEEEECGCC-TTTTS-TTC-
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC----ceEEEEEehhccC-cccCCcccCC
Confidence 4566764 4677777643 4569999999999999999999999999998 8999999887765 7889999999
Q ss_pred CEEEEEeCCceEe-eCcc
Q psy7943 101 PTLKFFKKRSIIE-YGEV 117 (142)
Q Consensus 101 P~~~i~~~~~~~~-~~g~ 117 (142)
|++++|++|..+. +.|.
T Consensus 200 PtllvYk~G~l~~~~V~l 217 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGL 217 (265)
T ss_dssp SEEEEEETTEEEEEECTG
T ss_pred CEEEEEECCEEEEeEEeh
Confidence 9999999988665 5544
No 139
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.85 E-value=2.2e-08 Score=62.26 Aligned_cols=75 Identities=24% Similarity=0.427 Sum_probs=46.4
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHc---CCCCCCEEEEEeCCc-eEeeCc
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQY---GVRGYPTLKFFKKRS-IIEYGE 116 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~i~~~P~~~i~~~~~-~~~~~g 116 (142)
..+..++.|..+|||.|+...|.+.++++..+ ++.+-.+..+++.++..+| |..++|+++++++++ .+..-|
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEc
Confidence 45668889999999999999999999999765 3444444445555555544 677899999998764 555445
Q ss_pred ccc
Q psy7943 117 VTS 119 (142)
Q Consensus 117 ~~~ 119 (142)
+++
T Consensus 116 erP 118 (129)
T PF14595_consen 116 ERP 118 (129)
T ss_dssp SS-
T ss_pred CCC
Confidence 443
No 140
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.84 E-value=1.8e-08 Score=56.78 Aligned_cols=56 Identities=27% Similarity=0.484 Sum_probs=38.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHH-----cCCCCCCEEEEEeCCce
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQ-----YGVRGYPTLKFFKKRSI 111 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~-----~~i~~~P~~~i~~~~~~ 111 (142)
++.||++||++|+++.+.+.+. .+.+-.+|.+++...... ++..++|++ ++++|..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~---------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~ 62 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL---------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF 62 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE
Confidence 6789999999999999987654 223334666555544444 388899997 4666543
No 141
>KOG2603|consensus
Probab=98.83 E-value=7.1e-08 Score=67.02 Aligned_cols=111 Identities=20% Similarity=0.276 Sum_probs=86.5
Q ss_pred CCCCcEEEeChhhHHHhhhc---CCcEEEEEECC----CChhhhhhhHHHHHHHHHHhcC-----CCceEEEEeeccccH
Q psy7943 22 TEEDGVLVLTQDNFQSSIEK---HDHILVEFYAP----WCGHCKQLVPEYSKAALQLATD-----GHDIKLAKVDATQHT 89 (142)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~---~~~~vv~f~~~----~C~~C~~~~~~~~~~~~~~~~~-----~~~~~~~~vd~~~~~ 89 (142)
.++..+..+++++|...++. +-..+|.|.|. .|+-|..+.+++..++..+..+ +..+-|..||.++.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 56778999999999998764 33477778766 7999999999999999887643 235789999999999
Q ss_pred HHHHHcCCCCCCEEEEEeCCc-eE-------eeCcccccccccccchHHhhcc
Q psy7943 90 ALAEQYGVRGYPTLKFFKKRS-II-------EYGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 90 ~~~~~~~i~~~P~~~i~~~~~-~~-------~~~g~~~~~~l~~~~~~~~~~~ 134 (142)
+..+.++++++|++++|.+.. .. ...-+.+++++ .+|+++..+
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~i--aqfv~~~tk 167 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQI--AQFVADRTK 167 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHH--HHHHHHhhh
Confidence 999999999999999995543 11 12223347888 888877653
No 142
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.79 E-value=4.9e-08 Score=67.16 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=71.0
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc---------cHHHHHHcCCCCCCEEEEEeCCc-
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ---------HTALAEQYGVRGYPTLKFFKKRS- 110 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------~~~~~~~~~i~~~P~~~i~~~~~- 110 (142)
+++..+++||...|++|+.+.|.+..+++.+. -.+..+.+|... +....+++|++.+|++++++.+.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCC
Confidence 36789999999999999999999999999997 677778887652 35688999999999999998874
Q ss_pred -eEe-eCcccccccccccchHHhhc
Q psy7943 111 -IIE-YGEVTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 111 -~~~-~~g~~~~~~l~~~~~~~~~~ 133 (142)
... -.|..+.++| .+-+....
T Consensus 226 ~~~pv~~G~iS~deL--~~Ri~~v~ 248 (256)
T TIGR02739 226 KMSPLAYGFISQDEL--KERILNVL 248 (256)
T ss_pred cEEEEeeccCCHHHH--HHHHHHHH
Confidence 222 5688888888 65554443
No 143
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.77 E-value=6.6e-08 Score=59.06 Aligned_cols=96 Identities=10% Similarity=0.106 Sum_probs=68.7
Q ss_pred hhHHHhhhcCCcEEEEEECC----CChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--ccHHHHHHcCCCCCCEEEEE
Q psy7943 33 DNFQSSIEKHDHILVEFYAP----WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--QHTALAEQYGVRGYPTLKFF 106 (142)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~~~----~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~~P~~~i~ 106 (142)
+.+..+.+++|.++|++|++ ||..|+..... .++.+... .++.+...|++ +..+++..++++++|++.++
T Consensus 8 eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln---~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l 83 (116)
T cd02991 8 QALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN---TRMLFWACSVAKPEGYRVSQALRERTYPFLAMI 83 (116)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH---cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEE
Confidence 44555667899999999999 78888654421 11122222 46788888886 45678999999999999998
Q ss_pred e---CCc--eEeeCcccccccccccchHHhhcc
Q psy7943 107 K---KRS--IIEYGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 107 ~---~~~--~~~~~g~~~~~~l~~~~~~~~~~~ 134 (142)
. +.. ..+..|..+++++ ...+.....
T Consensus 84 ~~~~~~~~vv~~i~G~~~~~~l--l~~L~~~~~ 114 (116)
T cd02991 84 MLKDNRMTIVGRLEGLIQPEDL--INRLTFIMD 114 (116)
T ss_pred EecCCceEEEEEEeCCCCHHHH--HHHHHHHHh
Confidence 3 322 3348999999999 888877654
No 144
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.77 E-value=3e-08 Score=60.51 Aligned_cols=68 Identities=19% Similarity=0.419 Sum_probs=44.9
Q ss_pred hcCCcEEEEEECC-------CChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc-------cHHHHH--HcCCCCCCEE
Q psy7943 40 EKHDHILVEFYAP-------WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-------HTALAE--QYGVRGYPTL 103 (142)
Q Consensus 40 ~~~~~~vv~f~~~-------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~~~~~--~~~i~~~P~~ 103 (142)
.++++++|+|+++ |||.|.+..|.+.+.....+ .+..++.+..+. +-.+.+ +++++++||+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~---~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTL 93 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP---ENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTL 93 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S---TTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEE
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC---CCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceE
Confidence 4578899999865 99999999999999877754 356666555532 123444 6999999999
Q ss_pred EEEeCCc
Q psy7943 104 KFFKKRS 110 (142)
Q Consensus 104 ~i~~~~~ 110 (142)
+-+..++
T Consensus 94 i~~~~~~ 100 (119)
T PF06110_consen 94 IRWETGE 100 (119)
T ss_dssp EECTSS-
T ss_pred EEECCCC
Confidence 9987763
No 145
>PRK15000 peroxidase; Provisional
Probab=98.76 E-value=7.8e-08 Score=64.26 Aligned_cols=89 Identities=9% Similarity=0.163 Sum_probs=64.0
Q ss_pred cCCcEEEEEECC-CChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--------------------------ccHHHHH
Q psy7943 41 KHDHILVEFYAP-WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--------------------------QHTALAE 93 (142)
Q Consensus 41 ~~~~~vv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--------------------------~~~~~~~ 93 (142)
+++.++++||.. ||+.|....+.+.+..++++..+..+..+.+|-. .+.++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 578999999985 9999999999999999999865555555555521 1235677
Q ss_pred HcCCC------CCCEEEEEeCCceEee--Ccc----cccccccccchHHh
Q psy7943 94 QYGVR------GYPTLKFFKKRSIIEY--GEV----TSVEYCYQRNWHKR 131 (142)
Q Consensus 94 ~~~i~------~~P~~~i~~~~~~~~~--~g~----~~~~~l~~~~~~~~ 131 (142)
.||+. ..|+.++++++|.+++ .+. ++.+++ .+.++.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~ei--lr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEM--LRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHH--HHHHHH
Confidence 88886 6899999998886653 232 344555 555543
No 146
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.74 E-value=3.1e-08 Score=56.86 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=41.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH-----HHHHHcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT-----ALAEQYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~i~~~P~~~i 105 (142)
|+.|+++|||+|+++.+.+.++. .. ..+.++.+|.+++. .+.+.+++.++|++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~---~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK---PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC---CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 47799999999999999998864 11 23677778776443 3667789999999854
No 147
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.73 E-value=1e-07 Score=62.72 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=41.3
Q ss_pred EEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeec
Q psy7943 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85 (142)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~ 85 (142)
+..++++.+....-++++++|.|||+||+.|+ ..+.++++.+.+++. ++.++.+.+
T Consensus 10 ~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~--gl~Vlg~p~ 65 (183)
T PRK10606 10 VTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ--GFVVLGFPC 65 (183)
T ss_pred eECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC--CeEEEEeec
Confidence 33444444444444689999999999999996 588999999999753 566666665
No 148
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.73 E-value=3.2e-08 Score=67.53 Aligned_cols=83 Identities=18% Similarity=0.371 Sum_probs=59.3
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEee------------------------------------
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVD------------------------------------ 84 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd------------------------------------ 84 (142)
+++.+++.|..+.||+|+++++.+.++.+. +..+.+....
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 367789999999999999999998876431 1222222121
Q ss_pred ------ccccHHHHHHcCCCCCCEEEEEeCCceEeeCcccccccccccchHHhh
Q psy7943 85 ------ATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 85 ------~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~l~~~~~~~~~ 132 (142)
..++.++++++|++++|+++ +.+|.. ..|..+.++| .+++.+.
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~--~~G~~~~~~L--~~~l~~~ 230 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIV-LSNGTL--VPGYQGPKEM--KAFLDEH 230 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEE-EcCCeE--eeCCCCHHHH--HHHHHHc
Confidence 12334789999999999998 555544 3788888999 8888754
No 149
>PRK13189 peroxiredoxin; Provisional
Probab=98.72 E-value=8.6e-08 Score=65.04 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=62.7
Q ss_pred cCCc-EEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-------------------------ccHHHHHH
Q psy7943 41 KHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-------------------------QHTALAEQ 94 (142)
Q Consensus 41 ~~~~-~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------~~~~~~~~ 94 (142)
+++. +++.|+++||+.|....+.+.+..+.+...+..+..+.+|-. .+.++++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 5664 455778999999999999999999998765555555555521 12367788
Q ss_pred cCCC-------CCCEEEEEeCCceEeeC------cccccccccccchHHhh
Q psy7943 95 YGVR-------GYPTLKFFKKRSIIEYG------EVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 95 ~~i~-------~~P~~~i~~~~~~~~~~------g~~~~~~l~~~~~~~~~ 132 (142)
||+. .+|+.++++++|.+++. .+++.+++ ...++..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~ei--lr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEI--LRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHH--HHHHHHh
Confidence 8875 46899999988866522 33455666 6666543
No 150
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.71 E-value=1.2e-07 Score=64.00 Aligned_cols=90 Identities=8% Similarity=0.083 Sum_probs=63.5
Q ss_pred cCCcEEE-EEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-------------------------ccHHHHHH
Q psy7943 41 KHDHILV-EFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-------------------------QHTALAEQ 94 (142)
Q Consensus 41 ~~~~~vv-~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------~~~~~~~~ 94 (142)
+++.+++ .|+++||+.|....+.+.+..+.+...+..+..+.+|-. .+.++++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 5666555 788999999999999999999999765555555555532 12367778
Q ss_pred cCCC-------CCCEEEEEeCCceEee------CcccccccccccchHHhh
Q psy7943 95 YGVR-------GYPTLKFFKKRSIIEY------GEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 95 ~~i~-------~~P~~~i~~~~~~~~~------~g~~~~~~l~~~~~~~~~ 132 (142)
||+. ..|+.++++++|.+++ ..+++.+++ .+.++..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~ei--lr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEI--LRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHH--HHHHHHh
Confidence 8863 3699999998886653 233456666 6666443
No 151
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.70 E-value=1.1e-07 Score=65.08 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=69.6
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc---------cHHHHHHcCCCCCCEEEEEeCCc--
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ---------HTALAEQYGVRGYPTLKFFKKRS-- 110 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------~~~~~~~~~i~~~P~~~i~~~~~-- 110 (142)
++..+++||...|++|..+.|.+..+++.+. -.+.-+.+|... +....++++++.+|++++++.+.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 6789999999999999999999999999997 577778887632 33466899999999999998765
Q ss_pred eEe-eCcccccccccccchHHhhc
Q psy7943 111 IIE-YGEVTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 111 ~~~-~~g~~~~~~l~~~~~~~~~~ 133 (142)
... ..|..+.++| .+-+....
T Consensus 220 ~~pv~~G~iS~deL--~~Ri~~v~ 241 (248)
T PRK13703 220 VRPLSYGFITQDDL--AKRFLNVS 241 (248)
T ss_pred EEEEeeccCCHHHH--HHHHHHHH
Confidence 222 5688888888 65555443
No 152
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.68 E-value=1.8e-07 Score=64.70 Aligned_cols=88 Identities=16% Similarity=0.220 Sum_probs=63.4
Q ss_pred cCCcEEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--------------------------ccHHHHH
Q psy7943 41 KHDHILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--------------------------QHTALAE 93 (142)
Q Consensus 41 ~~~~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--------------------------~~~~~~~ 93 (142)
+++.++++|| +.||+.|....+.+.+..+.+...+..+..+.+|-. .+.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5667777777 899999999999999999999765555555555541 1246888
Q ss_pred HcCCC-----CCCEEEEEeCCceEee------CcccccccccccchHH
Q psy7943 94 QYGVR-----GYPTLKFFKKRSIIEY------GEVTSVEYCYQRNWHK 130 (142)
Q Consensus 94 ~~~i~-----~~P~~~i~~~~~~~~~------~g~~~~~~l~~~~~~~ 130 (142)
.||+. ..|+.++++++|.+++ ..+++.+++ ...++
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~ei--Lr~l~ 222 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDET--LRLFD 222 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHH--HHHHH
Confidence 99985 4899999998886553 233455555 55554
No 153
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.68 E-value=1.3e-07 Score=63.37 Aligned_cols=87 Identities=14% Similarity=0.107 Sum_probs=59.8
Q ss_pred cEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-------------------------ccHHHHHHcCCC
Q psy7943 44 HILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-------------------------QHTALAEQYGVR 98 (142)
Q Consensus 44 ~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------~~~~~~~~~~i~ 98 (142)
.+++.|+++||+.|....+.+.++.+.+...+..+..+.+|-. .+.++++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 4556888999999999999999999999865555555555531 124678888875
Q ss_pred ----C----CCEEEEEeCCceEeeC--c----ccccccccccchHHhh
Q psy7943 99 ----G----YPTLKFFKKRSIIEYG--E----VTSVEYCYQRNWHKRA 132 (142)
Q Consensus 99 ----~----~P~~~i~~~~~~~~~~--g----~~~~~~l~~~~~~~~~ 132 (142)
+ .|+.++++++|.+++. + .++.+++ .+.++..
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~el--l~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEI--LRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHH--HHHHHHH
Confidence 2 3568999988866632 3 2345556 5555443
No 154
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.63 E-value=2.3e-06 Score=51.92 Aligned_cols=105 Identities=20% Similarity=0.366 Sum_probs=79.7
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-----ccHHHHHHcCC--C
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-----QHTALAEQYGV--R 98 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-----~~~~~~~~~~i--~ 98 (142)
+...+++-+|++.+.+.+.++|-|-... +--.-+..+.+++++......++.+..|.+. +|.++.++|++ .
T Consensus 5 G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke 82 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKE 82 (126)
T ss_dssp TSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCC
T ss_pred ceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcc
Confidence 4578889999999999999999998664 5566677899999554434467888888764 57899999999 5
Q ss_pred CCCEEEEEeCCc--eEee--CcccccccccccchHHhhcc
Q psy7943 99 GYPTLKFFKKRS--IIEY--GEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 99 ~~P~~~i~~~~~--~~~~--~g~~~~~~l~~~~~~~~~~~ 134 (142)
.+|.+++|.++. .+.| .|..+.+.| ..|+....+
T Consensus 83 ~fPv~~LF~~~~~~pv~~p~~~~~t~~~l--~~fvk~~t~ 120 (126)
T PF07912_consen 83 DFPVIYLFVGDKEEPVRYPFDGDVTADNL--QRFVKSNTG 120 (126)
T ss_dssp C-SEEEEEESSTTSEEEE-TCS-S-HHHH--HHHHHHTSS
T ss_pred cCCEEEEecCCCCCCccCCccCCccHHHH--HHHHHhCCC
Confidence 689999999655 7778 888899999 999987744
No 155
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.63 E-value=3.4e-07 Score=61.80 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=55.3
Q ss_pred cCCc-EEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-------------------------ccHHHHHH
Q psy7943 41 KHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-------------------------QHTALAEQ 94 (142)
Q Consensus 41 ~~~~-~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------~~~~~~~~ 94 (142)
+++. +++.|+++||+.|....+.+.++...+...+..+.-+.+|-. .+.++++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4665 467888999999999999999999999765445555555531 12367788
Q ss_pred cCCC-------CCCEEEEEeCCceEee
Q psy7943 95 YGVR-------GYPTLKFFKKRSIIEY 114 (142)
Q Consensus 95 ~~i~-------~~P~~~i~~~~~~~~~ 114 (142)
||+. ..|++++++++|.+++
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~ 133 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRL 133 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEE
Confidence 8873 5799999998886653
No 156
>KOG3425|consensus
Probab=98.62 E-value=2.5e-07 Score=55.69 Aligned_cols=73 Identities=22% Similarity=0.499 Sum_probs=56.0
Q ss_pred hhHHHhhh---cCCcEEEEEECC--------CChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc-------cHHHHHH
Q psy7943 33 DNFQSSIE---KHDHILVEFYAP--------WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-------HTALAEQ 94 (142)
Q Consensus 33 ~~~~~~~~---~~~~~vv~f~~~--------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~~~~~~ 94 (142)
+.|+..++ +++.++|+|++. |||.|.+.+|.+.+..+... .++.|+.++.+. +-.+.+.
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap---~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP---EDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC---CceEEEEEEecCCCcccCCCCccccC
Confidence 45666543 567799999875 99999999999999877555 678888888764 3356666
Q ss_pred cCC-CCCCEEEEEeC
Q psy7943 95 YGV-RGYPTLKFFKK 108 (142)
Q Consensus 95 ~~i-~~~P~~~i~~~ 108 (142)
.++ +++||++=+++
T Consensus 90 ~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKR 104 (128)
T ss_pred CCceeecceeeEEcC
Confidence 677 89999988774
No 157
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.62 E-value=4.3e-07 Score=54.33 Aligned_cols=95 Identities=16% Similarity=0.244 Sum_probs=70.7
Q ss_pred CCcEEEeChhhHHHhhhcCCcEEEEEECC--CChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCC
Q psy7943 24 EDGVLVLTQDNFQSSIEKHDHILVEFYAP--WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYP 101 (142)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P 101 (142)
..++..++.++++..+..+...+++|.++ -++.+....-.+-++.+.+. ..+....++...+.++..+||+..+|
T Consensus 8 ~~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~---~~~~~avv~~~~e~~L~~r~gv~~~P 84 (107)
T PF07449_consen 8 RHGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFP---GRFRGAVVARAAERALAARFGVRRWP 84 (107)
T ss_dssp T-TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTST---TSEEEEEEEHHHHHHHHHHHT-TSSS
T ss_pred hcCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhh---CccceEEECchhHHHHHHHhCCccCC
Confidence 34678888899999998888877766655 34555555557777777777 56777777777888999999999999
Q ss_pred EEEEEeCCceEe-eCcccccc
Q psy7943 102 TLKFFKKRSIIE-YGEVTSVE 121 (142)
Q Consensus 102 ~~~i~~~~~~~~-~~g~~~~~ 121 (142)
+++++++|..+. ..|..+.+
T Consensus 85 aLvf~R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 85 ALVFFRDGRYLGAIEGIRDWA 105 (107)
T ss_dssp EEEEEETTEEEEEEESSSTHH
T ss_pred eEEEEECCEEEEEecCeeccc
Confidence 999999998877 56666554
No 158
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.60 E-value=1.2e-06 Score=57.43 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=82.7
Q ss_pred cEEEeChhhHHHhhhcCCc-EEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCC--CCCE
Q psy7943 26 GVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVR--GYPT 102 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~-~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~--~~P~ 102 (142)
.+..++.+++..+...+.+ +++.|..........+...+..+++.++ ..+.|+.+|++....+.+.+|++ .+|+
T Consensus 78 ~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~---~~~~f~~~d~~~~~~~~~~~~i~~~~~P~ 154 (184)
T PF13848_consen 78 LVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK---GKINFVYVDADDFPRLLKYFGIDEDDLPA 154 (184)
T ss_dssp SCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT---TTSEEEEEETTTTHHHHHHTTTTTSSSSE
T ss_pred cccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC---CeEEEEEeehHHhHHHHHHcCCCCccCCE
Confidence 4778889999999888866 7777776778888899999999998887 57999999999888899999998 8999
Q ss_pred EEEEeC-CceEe--eCcccccccccccchHHh
Q psy7943 103 LKFFKK-RSIIE--YGEVTSVEYCYQRNWHKR 131 (142)
Q Consensus 103 ~~i~~~-~~~~~--~~g~~~~~~l~~~~~~~~ 131 (142)
+++++. ++... ..+..+.+.+ .+|+++
T Consensus 155 ~vi~~~~~~~~~~~~~~~~~~~~i--~~Fl~d 184 (184)
T PF13848_consen 155 LVIFDSNKGKYYYLPEGEITPESI--EKFLND 184 (184)
T ss_dssp EEEEETTTSEEEE--SSCGCHHHH--HHHHHH
T ss_pred EEEEECCCCcEEcCCCCCCCHHHH--HHHhcC
Confidence 999994 33333 3788888888 888763
No 159
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.60 E-value=1.9e-07 Score=64.50 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=58.5
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeec------------------------------------
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA------------------------------------ 85 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~------------------------------------ 85 (142)
++.+++.|..+.||+|+++.+.+.++.+.- ...+.++.+-.
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSG---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcC---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 567899999999999999999877654321 01222222110
Q ss_pred ------------cccHHHHHHcCCCCCCEEEEEeCCceE-eeCcccccccccccchHH
Q psy7943 86 ------------TQHTALAEQYGVRGYPTLKFFKKRSII-EYGEVTSVEYCYQRNWHK 130 (142)
Q Consensus 86 ------------~~~~~~~~~~~i~~~P~~~i~~~~~~~-~~~g~~~~~~l~~~~~~~ 130 (142)
.++.++.+++|++++|++++-+++|.+ ...|..+.++| .+++.
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L--~~~l~ 249 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQL--AEIMG 249 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHH--HHHhC
Confidence 012357788999999999999876655 47888888888 76654
No 160
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.59 E-value=4.3e-07 Score=60.66 Aligned_cols=75 Identities=16% Similarity=0.346 Sum_probs=58.2
Q ss_pred hcCCcEEEEEEC-CCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--------------------------ccHHHH
Q psy7943 40 EKHDHILVEFYA-PWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--------------------------QHTALA 92 (142)
Q Consensus 40 ~~~~~~vv~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--------------------------~~~~~~ 92 (142)
-+++.++|+||. .||+.|....+.+.++.+++...+..+..+..|-. .+.+++
T Consensus 34 ~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia 113 (199)
T PTZ00253 34 YKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA 113 (199)
T ss_pred HCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence 368899999994 78999999999999999999876556666666632 123678
Q ss_pred HHcCCC------CCCEEEEEeCCceEee
Q psy7943 93 EQYGVR------GYPTLKFFKKRSIIEY 114 (142)
Q Consensus 93 ~~~~i~------~~P~~~i~~~~~~~~~ 114 (142)
+.||+. .+|..++++++|.+++
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~ 141 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQ 141 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEE
Confidence 888885 3689999999886653
No 161
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.55 E-value=1.2e-06 Score=47.03 Aligned_cols=51 Identities=27% Similarity=0.438 Sum_probs=36.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH----HHHHHcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT----ALAEQYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i~~~P~~~i 105 (142)
++.|+.+||++|++....|.+ .++.+-.+|.+.++ ++.+..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~---------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE---------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH---------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH---------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 577999999999999988744 23445555555442 3444449999999987
No 162
>KOG3414|consensus
Probab=98.54 E-value=1.7e-06 Score=52.53 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=66.1
Q ss_pred hhhHHHhhh--cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCC
Q psy7943 32 QDNFQSSIE--KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKR 109 (142)
Q Consensus 32 ~~~~~~~~~--~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~ 109 (142)
....++++. ..+.+|+.|...|-|.|..+...+..+++... .-.++..+|.++-+.+.+-|+++..|++++|-++
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs---nfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVS---NFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHh---hceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 456677664 57899999999999999999999999999887 3467778899999999999999999998877666
Q ss_pred ceE
Q psy7943 110 SII 112 (142)
Q Consensus 110 ~~~ 112 (142)
+.+
T Consensus 88 kHm 90 (142)
T KOG3414|consen 88 KHM 90 (142)
T ss_pred ceE
Confidence 633
No 163
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.54 E-value=5.5e-07 Score=68.82 Aligned_cols=91 Identities=13% Similarity=0.178 Sum_probs=70.5
Q ss_pred eChhhHHHhhhcCCc-EEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC
Q psy7943 30 LTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108 (142)
Q Consensus 30 ~~~~~~~~~~~~~~~-~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~ 108 (142)
++++..+++.+=+++ .+-.|.+++||+|......+++++...+ ++..-.+|..+.+++.++|++.++|++++
T Consensus 463 l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--- 535 (555)
T TIGR03143 463 LGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--- 535 (555)
T ss_pred CCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEECcccHHHHHhCCceecCEEEE---
Confidence 344555554443444 4656789999999999999999888765 68888899999999999999999999988
Q ss_pred CceEeeCcccccccccccchH
Q psy7943 109 RSIIEYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 109 ~~~~~~~g~~~~~~l~~~~~~ 129 (142)
++...+.|..+.+++ .+|+
T Consensus 536 ~~~~~~~G~~~~~~~--~~~~ 554 (555)
T TIGR03143 536 DDQQVYFGKKTIEEM--LELI 554 (555)
T ss_pred CCEEEEeeCCCHHHH--HHhh
Confidence 344556788888888 7665
No 164
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.50 E-value=4.9e-07 Score=60.28 Aligned_cols=78 Identities=22% Similarity=0.384 Sum_probs=53.6
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEe-------------------------------------
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV------------------------------------- 83 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~v------------------------------------- 83 (142)
.++..++.|+.++||+|+++.+.+.+. ..+..+.+..+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~-----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN-----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc-----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 368899999999999999999988761 01112222222
Q ss_pred ------eccccHHHHHHcCCCCCCEEEEEeCCceEeeCcccccccccccch
Q psy7943 84 ------DATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRNW 128 (142)
Q Consensus 84 ------d~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~l~~~~~ 128 (142)
+..++.++++++|++++|+++ +++|.. ..|..+.+++ .++
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~~~l--~~~ 196 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIV-LADGRV--VPGAPPAAQL--EAL 196 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE--ecCCCCHHHH--Hhh
Confidence 222334788999999999997 666654 4677777777 554
No 165
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.49 E-value=6.1e-07 Score=51.77 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=40.9
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc----HHHHHHcC--CCCCCEEEE
Q psy7943 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH----TALAEQYG--VRGYPTLKF 105 (142)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~--i~~~P~~~i 105 (142)
-++.|+.+||++|++..+.+.++...+. ++.+..+|.+++ .++.+..+ ...+|++++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi 64 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV 64 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE
Confidence 3678999999999999999999887543 444555555443 34555555 478999864
No 166
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.46 E-value=1.1e-06 Score=66.58 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=71.6
Q ss_pred eChhhHHHhhh-cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC
Q psy7943 30 LTQDNFQSSIE-KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108 (142)
Q Consensus 30 ~~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~ 108 (142)
++++..+.+.+ .++..+-.|.+++||+|......+++++...+ ++..-.+|..+.+++.++|++.++|++++ +
T Consensus 103 l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~ 176 (517)
T PRK15317 103 LDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMIDGALFQDEVEARNIMAVPTVFL--N 176 (517)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEEEchhCHhHHHhcCCcccCEEEE--C
Confidence 34444444433 34556888999999999999999988887544 78888889999999999999999999976 3
Q ss_pred CceEeeCcccccccccccchHHh
Q psy7943 109 RSIIEYGEVTSVEYCYQRNWHKR 131 (142)
Q Consensus 109 ~~~~~~~g~~~~~~l~~~~~~~~ 131 (142)
+ ...+.|..+.+++ ...+.+
T Consensus 177 ~-~~~~~g~~~~~~~--~~~~~~ 196 (517)
T PRK15317 177 G-EEFGQGRMTLEEI--LAKLDT 196 (517)
T ss_pred C-cEEEecCCCHHHH--HHHHhc
Confidence 3 3447788888788 666654
No 167
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.44 E-value=7e-07 Score=49.49 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=34.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHH----HHHHcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA----LAEQYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~~P~~~i 105 (142)
++.|+++||++|..+...+.+. ++.+..+|.+.+.. +.+..+...+|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5779999999999988777652 23344445544433 333336789999976
No 168
>KOG0911|consensus
Probab=98.40 E-value=2.1e-07 Score=61.99 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=67.3
Q ss_pred hhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEe-eCc
Q psy7943 38 SIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIE-YGE 116 (142)
Q Consensus 38 ~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~-~~g 116 (142)
..++++..+++||+.||..|..+...+..+++... +..+++.+.++..+++..+.+...|.+.++..|..+. ..|
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~ 88 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSG 88 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhc
Confidence 44588999999999999999999999999998884 8899999999999999999999999999987776444 444
Q ss_pred ccc
Q psy7943 117 VTS 119 (142)
Q Consensus 117 ~~~ 119 (142)
...
T Consensus 89 ~~~ 91 (227)
T KOG0911|consen 89 ADP 91 (227)
T ss_pred cCc
Confidence 443
No 169
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.37 E-value=1.3e-06 Score=50.55 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=40.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc----cHHHHHHcCC--CCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ----HTALAEQYGV--RGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~i--~~~P~~~i 105 (142)
|+.|+.+|||+|.+....+.++...+. .+.+..+|.+. ..++.+..+- .++|.+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi 63 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV 63 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE
Confidence 677999999999999999988654332 35555566653 2356666664 78999965
No 170
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.34 E-value=6.9e-06 Score=52.69 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=59.7
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc--c------------------------------
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ--H------------------------------ 88 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~------------------------------ 88 (142)
..+.+|+.|+...||+|.++.+.+.++.+.+-+. ..+.+...+... .
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~-~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP-GKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-TTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC-CceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 5688999999999999999999999998888322 355555554410 0
Q ss_pred ------------------------------------HHHHHHcCCCCCCEEEEEeCCceEeeCcccccccccccchHHh
Q psy7943 89 ------------------------------------TALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKR 131 (142)
Q Consensus 89 ------------------------------------~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~l~~~~~~~~ 131 (142)
....++++|+++|++++ +|+. +.|..+.+++ .++|++
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~--~~~~~~~~~l--~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY--VVGPYTIEEL--KELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE--EETTTSHHHH--HHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE--eCCCCCHHHH--HHHHcC
Confidence 04567889999999998 4444 4677788888 776653
No 171
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.34 E-value=3.9e-06 Score=53.24 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=26.9
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHH
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQL 71 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~ 71 (142)
..+++++.|+.++||+|+.+.+.+.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4678999999999999999999998876554
No 172
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.28 E-value=5.5e-06 Score=62.88 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=71.9
Q ss_pred eChhhHHHhhh-cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC
Q psy7943 30 LTQDNFQSSIE-KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108 (142)
Q Consensus 30 ~~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~ 108 (142)
++++..+.+.. .++..+-.|.++.||+|......+++++...+ ++..-.+|..+.+++.++|++.++|++++ +
T Consensus 104 l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~ 177 (515)
T TIGR03140 104 LDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMIDGALFQDEVEALGIQGVPAVFL--N 177 (515)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEEEchhCHHHHHhcCCcccCEEEE--C
Confidence 44455554443 35556888999999999999988888877655 67777799999999999999999999987 2
Q ss_pred CceEeeCcccccccccccchHHhh
Q psy7943 109 RSIIEYGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 109 ~~~~~~~g~~~~~~l~~~~~~~~~ 132 (142)
+...+.|..+.+++ .+.+.+.
T Consensus 178 -~~~~~~g~~~~~~~--~~~l~~~ 198 (515)
T TIGR03140 178 -GEEFHNGRMDLAEL--LEKLEET 198 (515)
T ss_pred -CcEEEecCCCHHHH--HHHHhhc
Confidence 33447788887777 6666544
No 173
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.2e-05 Score=51.41 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=67.2
Q ss_pred CCCcEEEeChhhHHHhhhcCCcEEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc---------------
Q psy7943 23 EEDGVLVLTQDNFQSSIEKHDHILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--------------- 86 (142)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--------------- 86 (142)
+.......+.+.+.....+++.+|+||| ..++|.|....-.|.+...++...+..+.-+..|-.
T Consensus 11 PdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~ 90 (157)
T COG1225 11 PDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFP 90 (157)
T ss_pred CCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCce
Confidence 3334444445555555567889999999 679999999999999999999876566666666642
Q ss_pred ----ccHHHHHHcCCC------------CCCEEEEEeCCceEe
Q psy7943 87 ----QHTALAEQYGVR------------GYPTLKFFKKRSIIE 113 (142)
Q Consensus 87 ----~~~~~~~~~~i~------------~~P~~~i~~~~~~~~ 113 (142)
.+.++++.||+. ..+++++++++|.++
T Consensus 91 LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~ 133 (157)
T COG1225 91 LLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIR 133 (157)
T ss_pred eeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEE
Confidence 345788888874 357889999988666
No 174
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.26 E-value=2.4e-06 Score=48.66 Aligned_cols=53 Identities=21% Similarity=0.373 Sum_probs=39.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc-----HHHHHHcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH-----TALAEQYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~i~~~P~~~i 105 (142)
++.|+++|||+|+...+.+.++.. .+.++.+|.+.+ ..+.+..+..++|.+++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 577999999999999998888533 455666776544 23556678889999743
No 175
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.25 E-value=4.9e-05 Score=46.79 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=66.1
Q ss_pred ChhhHHHhhh--cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEE-EEEe
Q psy7943 31 TQDNFQSSIE--KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTL-KFFK 107 (142)
Q Consensus 31 ~~~~~~~~~~--~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~-~i~~ 107 (142)
+....++++. ..+.+++.|..+|-+.|..+...+.+.++..+ .-..+..+|.++-+.+.+.|.+. .|.. ++|-
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~---~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~ 82 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK---NFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFF 82 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT---TTEEEEEEETTTTHCCHHHTTS--SSEEEEEEE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh---cceEEEEEEcccchhhhcccccC-CCeEEEEEe
Confidence 3556777664 58999999999999999999999999999887 45788899999999999999998 8864 4453
Q ss_pred CCceEe-eCcccccccc
Q psy7943 108 KRSIIE-YGEVTSVEYC 123 (142)
Q Consensus 108 ~~~~~~-~~g~~~~~~l 123 (142)
+++.+. --|..+...+
T Consensus 83 rnkhm~vD~GtgnnnKi 99 (133)
T PF02966_consen 83 RNKHMMVDFGTGNNNKI 99 (133)
T ss_dssp TTEEEEEESSSSSSSSB
T ss_pred cCeEEEEEecCCCccEE
Confidence 555333 3344433333
No 176
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.25 E-value=2.9e-05 Score=46.28 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=59.3
Q ss_pred eChhhHHHhhhc--CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH----HHHHHcCCC-CCCE
Q psy7943 30 LTQDNFQSSIEK--HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT----ALAEQYGVR-GYPT 102 (142)
Q Consensus 30 ~~~~~~~~~~~~--~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i~-~~P~ 102 (142)
.+.+++++++++ .++++++=+++.||-+......+++...... ..+.++.+|.-+++ +++++|||+ .-|-
T Consensus 5 ~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~---~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 5 TTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESP---DEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCC---ccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 356788888876 8899999999999999999999999888776 23777778887765 578899997 5799
Q ss_pred EEEEeCCceEe
Q psy7943 103 LKFFKKRSIIE 113 (142)
Q Consensus 103 ~~i~~~~~~~~ 113 (142)
++++++|+.+-
T Consensus 82 ~ili~~g~~v~ 92 (105)
T PF11009_consen 82 VILIKNGKVVW 92 (105)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCEEEE
Confidence 99999998543
No 177
>PHA03050 glutaredoxin; Provisional
Probab=98.25 E-value=5e-06 Score=50.16 Aligned_cols=64 Identities=14% Similarity=0.285 Sum_probs=41.1
Q ss_pred HHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc-----cHHHHHHcCCCCCCEEEE
Q psy7943 36 QSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-----HTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 36 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-----~~~~~~~~~i~~~P~~~i 105 (142)
++.+++++ |+.|..+|||+|++....|.+..-.. ..+..+.+|... ...+.+.-|.+.+|++++
T Consensus 7 ~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~----~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 7 QQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR----GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred HHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc----CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 33444433 66799999999999998887643211 145555555321 234566668889999955
No 178
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.24 E-value=6.1e-06 Score=46.91 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=38.1
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc-HHHHHHcCCCCCCEEEE
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH-TALAEQYGVRGYPTLKF 105 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~~P~~~i 105 (142)
.+.-|+.|+.+||++|++....|.+. +..+..+.++.+.. ..+.+..+...+|.+++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 34457789999999999999888642 13344444433322 34555678889999965
No 179
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.22 E-value=1.1e-05 Score=52.65 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=29.1
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHh
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLA 72 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~ 72 (142)
.+++.++.|+...||+|+.+.+.+..+.+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~ 45 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP 45 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC
Confidence 67899999999999999999999999888764
No 180
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.21 E-value=1.5e-05 Score=48.29 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=78.3
Q ss_pred EEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHH---HhcCCCceEEEEeeccccHHHHHHcCCCC--CCE
Q psy7943 28 LVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQ---LATDGHDIKLAKVDATQHTALAEQYGVRG--YPT 102 (142)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~---~~~~~~~~~~~~vd~~~~~~~~~~~~i~~--~P~ 102 (142)
..++.++.+.+..++.+..+.|+. =..-....+.+.++++. ++ +.+.|+.+|.+......+.+|+.. .|.
T Consensus 2 ~e~t~e~~~~~~~~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~k---gki~Fv~~d~~~~~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 2 REITFENAEELTEEGLPFLILFHD--KDDLESLKEFKQAVARQLISEK---GAINFLTADGDKFRHPLLHLGKTPADLPV 76 (111)
T ss_pred cccccccHHHHhcCCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcC---ceEEEEEEechHhhhHHHHcCCCHhHCCE
Confidence 356677888888887777666772 22446788889999999 66 679999999998888999999997 899
Q ss_pred EEEEeCCc--eEe-eCcccccccccccchHHhhcc
Q psy7943 103 LKFFKKRS--IIE-YGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 103 ~~i~~~~~--~~~-~~g~~~~~~l~~~~~~~~~~~ 134 (142)
+.+.+.++ .+. +.+..+.+.| .+|+++.++
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i--~~Fv~~~~~ 109 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKL--KQFVLDLHS 109 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHH--HHHHHHHhc
Confidence 99998755 333 4577888999 999988764
No 181
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.16 E-value=9.1e-06 Score=45.32 Aligned_cols=65 Identities=12% Similarity=0.197 Sum_probs=41.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHH---HcCCCCCCEEEEEeCCceEeeCccccccc
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAE---QYGVRGYPTLKFFKKRSIIEYGEVTSVEY 122 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~i~~~P~~~i~~~~~~~~~~g~~~~~~ 122 (142)
+..|+.++|++|++....|.+ .++.+-.+|++++.+..+ +.|..++|++++ +|. ...|+.+++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~---------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~ 67 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE---------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDK 67 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH---------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHH
Confidence 356889999999999988875 244455566665554433 347788999865 222 1334455555
Q ss_pred c
Q psy7943 123 C 123 (142)
Q Consensus 123 l 123 (142)
|
T Consensus 68 ~ 68 (72)
T TIGR02194 68 L 68 (72)
T ss_pred H
Confidence 4
No 182
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=4.7e-06 Score=63.81 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=70.6
Q ss_pred CCCCcEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcC-----
Q psy7943 22 TEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYG----- 96 (142)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~----- 96 (142)
..+-++.+.+++.|+++...+||+++-+...||++|.-|...--+..+.-.-.+.+++-++||-++-+.+.+.|.
T Consensus 23 ~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~ 102 (667)
T COG1331 23 HNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQA 102 (667)
T ss_pred CCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHH
Confidence 345578889999999999999999999999999999999876333222222223689999999988665555442
Q ss_pred ---CCCCCEEEEEeCCceEee
Q psy7943 97 ---VRGYPTLKFFKKRSIIEY 114 (142)
Q Consensus 97 ---i~~~P~~~i~~~~~~~~~ 114 (142)
--+.|..+|+-+++..-|
T Consensus 103 ~tG~GGWPLtVfLTPd~kPFf 123 (667)
T COG1331 103 ITGQGGWPLTVFLTPDGKPFF 123 (667)
T ss_pred hccCCCCceeEEECCCCceee
Confidence 458999999988774444
No 183
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.09 E-value=4.1e-05 Score=44.98 Aligned_cols=88 Identities=18% Similarity=0.293 Sum_probs=66.9
Q ss_pred hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC--C
Q psy7943 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK--R 109 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~--~ 109 (142)
.++++..+..+++++|-|+.++++ .....+.+.+..++ ..+.|+.+. +..+.+++++. .|++++|++ .
T Consensus 7 ~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r---~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~ 76 (97)
T cd02981 7 KEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLR---DDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEE 76 (97)
T ss_pred HHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcc---cCCeEEEEC---hHHHHHHcCCC-CCceEEeCCccc
Confidence 455666778899999999999887 46667788888776 357777666 45677778775 589999976 3
Q ss_pred ceEeeCcccccccccccchHHh
Q psy7943 110 SIIEYGEVTSVEYCYQRNWHKR 131 (142)
Q Consensus 110 ~~~~~~g~~~~~~l~~~~~~~~ 131 (142)
+...|.|..+.++| .+|+..
T Consensus 77 ~~~~y~g~~~~~~l--~~fi~~ 96 (97)
T cd02981 77 EPVEYDGEFTEESL--VEFIKD 96 (97)
T ss_pred CCccCCCCCCHHHH--HHHHHh
Confidence 45669998888899 888854
No 184
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.08 E-value=1.2e-05 Score=45.96 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=56.5
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCc---eEeeCcccccc
Q psy7943 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS---IIEYGEVTSVE 121 (142)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~---~~~~~g~~~~~ 121 (142)
.++.|+.+.|+-|..+...+..+... ..+.+-.+|+++++++..+|+. .+|.+.+-+.++ .....+..+.+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~-----~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~ 74 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAE-----FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEE 74 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTT-----STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhh-----cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHH
Confidence 36789999999999999888874332 3488888999999999999997 699976643211 34456777778
Q ss_pred cccccchHH
Q psy7943 122 YCYQRNWHK 130 (142)
Q Consensus 122 ~l~~~~~~~ 130 (142)
++ .+|++
T Consensus 75 ~L--~~~L~ 81 (81)
T PF05768_consen 75 QL--RAWLE 81 (81)
T ss_dssp HH--HHHHH
T ss_pred HH--HHHhC
Confidence 87 77763
No 185
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.06 E-value=1.5e-05 Score=45.14 Aligned_cols=53 Identities=19% Similarity=0.399 Sum_probs=34.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc--cHHHHHHcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ--HTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~P~~~i 105 (142)
++.|+.+|||+|.+....+.+. +..+..+.++.+. -.++.+..+..++|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3568899999999999988753 1234444444332 123445557788999854
No 186
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.05 E-value=3.1e-05 Score=42.49 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=35.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH----HHHHHcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT----ALAEQYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i~~~P~~~i 105 (142)
++.|+++||++|+.....+.+.. +.+..+|...+. .+.+..+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56789999999999998887642 444555655543 3344457678898754
No 187
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.01 E-value=3.8e-05 Score=42.85 Aligned_cols=51 Identities=14% Similarity=0.267 Sum_probs=36.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH----HHHHHcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT----ALAEQYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i~~~P~~~i 105 (142)
++.|+.+||++|++....+.+. ++.+..+|+.++. ++.+..+-..+|.+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5678999999999999888762 3444455655543 4566667788999855
No 188
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.01 E-value=2.1e-05 Score=46.68 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=35.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc-H----HHHHHcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH-T----ALAEQYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~----~~~~~~~i~~~P~~~i 105 (142)
++.|..+|||+|.+....|.+. +..+..+.+|.+.+ . .+.+..|.+.+|.+++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence 6669999999999999877653 23455666664433 2 2344446788999843
No 189
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.98 E-value=4.7e-05 Score=42.54 Aligned_cols=51 Identities=16% Similarity=0.326 Sum_probs=33.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH----HHHHHcCCC-CCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT----ALAEQYGVR-GYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i~-~~P~~~i 105 (142)
++.|+.+|||+|.+....+.+. ++.+-.+|++.+. ++.+..+.. ++|++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 5678999999999999888762 2333444444433 344455666 8998854
No 190
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.97 E-value=0.00029 Score=43.94 Aligned_cols=104 Identities=15% Similarity=0.283 Sum_probs=74.3
Q ss_pred EEEeChhhH-HHhhhcCCcEEEEEECCC---Chh-h-hhhhHHHHHHHHHHhcCCCc-eEEEEeeccccHHHHHHcCCC-
Q psy7943 27 VLVLTQDNF-QSSIEKHDHILVEFYAPW---CGH-C-KQLVPEYSKAALQLATDGHD-IKLAKVDATQHTALAEQYGVR- 98 (142)
Q Consensus 27 ~~~~~~~~~-~~~~~~~~~~vv~f~~~~---C~~-C-~~~~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~i~- 98 (142)
+..+++++. +..-.+++.=+|-| -+. |.. + ......+.++++.++ .. +.|+-+|.+....+.+.||+.
T Consensus 4 ~~~l~~~~~~~~~C~~~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~k---gk~i~Fv~vd~~~~~~~~~~fgl~~ 79 (130)
T cd02983 4 IIELTSEDVFEETCEEKQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFK---KKPWGWLWTEAGAQLDLEEALNIGG 79 (130)
T ss_pred eEEecCHHHHHhhccCCCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhc---CCcEEEEEEeCcccHHHHHHcCCCc
Confidence 455555544 44454444444444 442 322 2 345667888899998 35 899999999988899999995
Q ss_pred -CCCEEEEEeCCc-eEe-eCcccccccccccchHHhhccce
Q psy7943 99 -GYPTLKFFKKRS-IIE-YGEVTSVEYCYQRNWHKRAVTSV 136 (142)
Q Consensus 99 -~~P~~~i~~~~~-~~~-~~g~~~~~~l~~~~~~~~~~~~~ 136 (142)
++|++++++..+ .+. +.|..+.+.+ .+|+.+.+...
T Consensus 80 ~~~P~v~i~~~~~~KY~~~~~~~t~e~i--~~Fv~~~l~Gk 118 (130)
T cd02983 80 FGYPAMVAINFRKMKFATLKGSFSEDGI--NEFLRELSYGR 118 (130)
T ss_pred cCCCEEEEEecccCccccccCccCHHHH--HHHHHHHHcCC
Confidence 499999999876 444 6688999999 99999987643
No 191
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.92 E-value=0.0001 Score=44.71 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=68.2
Q ss_pred eChhhHHHhhhcCCcEEEEE---ECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCC----CCE
Q psy7943 30 LTQDNFQSSIEKHDHILVEF---YAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRG----YPT 102 (142)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f---~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~----~P~ 102 (142)
.+.++..... +.+..++++ |+..-..-......+.++++.+++ +.+.|+.+|.++.....+.||+.. .|+
T Consensus 4 ~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~--gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~ 80 (111)
T cd03073 4 RTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD--RKLNFAVADKEDFSHELEEFGLDFSGGEKPV 80 (111)
T ss_pred eccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC--CeEEEEEEcHHHHHHHHHHcCCCcccCCCCE
Confidence 3445555553 333444443 223334456778889999999983 269999999998877889999984 999
Q ss_pred EEEEeCCc-eEeeCccc-ccccccccchHHhh
Q psy7943 103 LKFFKKRS-IIEYGEVT-SVEYCYQRNWHKRA 132 (142)
Q Consensus 103 ~~i~~~~~-~~~~~g~~-~~~~l~~~~~~~~~ 132 (142)
+.+.+.++ .+...+.. +.+.| .+|+++.
T Consensus 81 ~~i~~~~~~KY~~~~~~~t~e~i--~~F~~~f 110 (111)
T cd03073 81 VAIRTAKGKKYVMEEEFSDVDAL--EEFLEDF 110 (111)
T ss_pred EEEEeCCCCccCCCcccCCHHHH--HHHHHHh
Confidence 99998554 33345666 88899 8888764
No 192
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.91 E-value=6.7e-05 Score=41.71 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=34.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc-HHHHHHcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH-TALAEQYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~~P~~~i 105 (142)
++.|..+|||+|.+....|.+. +..+....++.+.. ..+....|...+|.+++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi 56 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE
Confidence 6779999999999998877752 13344444443332 23444458889999843
No 193
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.89 E-value=9e-05 Score=42.34 Aligned_cols=69 Identities=9% Similarity=0.115 Sum_probs=44.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHH---HHHcCCCCCCEEEEEeCCceEeeCccccccc
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTAL---AEQYGVRGYPTLKFFKKRSIIEYGEVTSVEY 122 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~ 122 (142)
+..|..+||++|.+....|.+ .++.|-.+|++++++. .+..|...+|++++ ++. ..++.+.+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~---------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES---------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH---------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHH
Confidence 567899999999999887754 2455555666655432 33457778999966 222 223455566
Q ss_pred ccccchHH
Q psy7943 123 CYQRNWHK 130 (142)
Q Consensus 123 l~~~~~~~ 130 (142)
| .++..
T Consensus 69 l--~~~~~ 74 (81)
T PRK10329 69 I--NRLHP 74 (81)
T ss_pred H--HHHHH
Confidence 6 55443
No 194
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=8.2e-05 Score=42.41 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=35.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc--c-HHHHHHc-CCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ--H-TALAEQY-GVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~-~~~~~~~-~i~~~P~~~i 105 (142)
++.|..++||+|.+....|.+ .+..+..+.++.++ . ++..++. |.+.+|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 567889999999999988773 22344444444444 2 2344444 7889999977
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.84 E-value=8e-05 Score=43.19 Aligned_cols=61 Identities=31% Similarity=0.456 Sum_probs=43.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc------------------------------HHHHHHc
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH------------------------------TALAEQY 95 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------------~~~~~~~ 95 (142)
+..|+.+.||+|..+.+.+.++..... .+..+.+..+..... .+...++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD-GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL 79 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC-CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 467999999999999999999874443 223444444433321 2466788
Q ss_pred CCCCCCEEEEEe
Q psy7943 96 GVRGYPTLKFFK 107 (142)
Q Consensus 96 ~i~~~P~~~i~~ 107 (142)
|+.++|++++.+
T Consensus 80 g~~g~Pt~v~~~ 91 (98)
T cd02972 80 GVTGTPTFVVNG 91 (98)
T ss_pred CCCCCCEEEECC
Confidence 999999999865
No 196
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.83 E-value=0.00017 Score=55.35 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=69.1
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCc---eEeeCcc
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS---IIEYGEV 117 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~---~~~~~g~ 117 (142)
++++.++.|+.+.|+.|..+...+++++... ..+.+...|..++.+..++|+++..|++.++++++ .++|.|.
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s----~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFASLS----EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHhcC----CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEec
Confidence 3555777888889999999999998888544 36777778888889999999999999999996443 4788888
Q ss_pred cccccccccchHHhhc
Q psy7943 118 TSVEYCYQRNWHKRAV 133 (142)
Q Consensus 118 ~~~~~l~~~~~~~~~~ 133 (142)
..-.++ ..|+...+
T Consensus 441 P~G~Ef--~s~i~~i~ 454 (555)
T TIGR03143 441 PSGHEL--NSFILALY 454 (555)
T ss_pred CccHhH--HHHHHHHH
Confidence 777777 66666553
No 197
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.77 E-value=0.00025 Score=41.89 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=36.5
Q ss_pred HHhhhcCCcEEEEEEC----CCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH----HHHHHcCCCCCCEEEE
Q psy7943 36 QSSIEKHDHILVEFYA----PWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT----ALAEQYGVRGYPTLKF 105 (142)
Q Consensus 36 ~~~~~~~~~~vv~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i~~~P~~~i 105 (142)
+..+++ +.++|+-.+ +|||+|.+....|.+. ++-+..+|..++. ++.+..|-..+|.+++
T Consensus 6 ~~~i~~-~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 6 KEQIKE-NPVVLYMKGTPQFPQCGFSARAVQILKAC---------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred HHHhcc-CCEEEEEccCCCCCCCchHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 334444 444554332 8999999999888763 2234445554443 3444556778999865
No 198
>PRK10638 glutaredoxin 3; Provisional
Probab=97.64 E-value=0.00029 Score=40.31 Aligned_cols=53 Identities=11% Similarity=0.256 Sum_probs=34.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc--cHHHHHHcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ--HTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~P~~~i 105 (142)
++.|..+||++|++....+.+. +..+..+.+|.+. ...+.+..+...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 6678899999999999888763 1234444443322 224555567788998844
No 199
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.60 E-value=0.00042 Score=40.34 Aligned_cols=45 Identities=20% Similarity=0.429 Sum_probs=29.5
Q ss_pred CCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH----HHHHHcCCCCCCEEEE
Q psy7943 52 PWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT----ALAEQYGVRGYPTLKF 105 (142)
Q Consensus 52 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i~~~P~~~i 105 (142)
+||++|++....|.+.. +.+-.+|..++. .+.+..|-+.+|.+++
T Consensus 21 ~~Cp~C~~ak~~L~~~~---------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 21 PRCGFSRKVVQILNQLG---------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred CCCcHHHHHHHHHHHcC---------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 69999999998887742 233334444333 3455567788999854
No 200
>KOG3171|consensus
Probab=97.52 E-value=0.00051 Score=45.91 Aligned_cols=82 Identities=22% Similarity=0.378 Sum_probs=67.3
Q ss_pred EEEeChhhHHHhhhc---CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEE
Q psy7943 27 VLVLTQDNFQSSIEK---HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTL 103 (142)
Q Consensus 27 ~~~~~~~~~~~~~~~---~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~ 103 (142)
+.-.+.++|..++.+ ..+.+|++|.+.-+.|.++...+.-++..|+ .+.|+++-.. +.....+|...++|++
T Consensus 141 ~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP----~vKFckikss-~~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 141 YELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP----IVKFCKIKSS-NTGASDRFSLNVLPTL 215 (273)
T ss_pred EEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC----ceeEEEeeec-cccchhhhcccCCceE
Confidence 344556788887754 5678999999999999999999999999987 7888888643 3456788999999999
Q ss_pred EEEeCCceEe
Q psy7943 104 KFFKKRSIIE 113 (142)
Q Consensus 104 ~i~~~~~~~~ 113 (142)
.||.+|..+.
T Consensus 216 liYkgGeLIg 225 (273)
T KOG3171|consen 216 LIYKGGELIG 225 (273)
T ss_pred EEeeCCchhH
Confidence 9999998664
No 201
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.46 E-value=0.0009 Score=45.55 Aligned_cols=62 Identities=8% Similarity=0.140 Sum_probs=47.8
Q ss_pred CCCCCcEEEeChhh---HHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEe
Q psy7943 21 VTEEDGVLVLTQDN---FQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83 (142)
Q Consensus 21 ~~~~~~~~~~~~~~---~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (142)
.+++..+..++++. +-+..+.++|.|++|.+-+||+=+.-.+.++++.+.+.+. .++..+.+
T Consensus 78 ~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI 142 (237)
T PF00837_consen 78 PAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYI 142 (237)
T ss_pred CCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhH
Confidence 44566777777766 5556678999999999999999999999999999999842 23444433
No 202
>KOG1752|consensus
Probab=97.40 E-value=0.0012 Score=39.47 Aligned_cols=53 Identities=23% Similarity=0.376 Sum_probs=36.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH-HHHH----HcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT-ALAE----QYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~----~~~i~~~P~~~i 105 (142)
+|.|..+||++|.++...|.+ + +.+..++.+|..++. ++.+ .-+.+.+|.++|
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----L---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----C---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 445999999999997766666 2 257788888876543 3333 234568999876
No 203
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.31 E-value=0.0016 Score=42.68 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.1
Q ss_pred EEECCCChhhhhhhHHHHHHHHHHhc
Q psy7943 48 EFYAPWCGHCKQLVPEYSKAALQLAT 73 (142)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~~~~~~~~ 73 (142)
+|+-|.|++|-..+|.+.++...+..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58899999999999999999999873
No 204
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.25 E-value=0.001 Score=49.36 Aligned_cols=51 Identities=12% Similarity=0.265 Sum_probs=35.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHH---HHHH---------cCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA---LAEQ---------YGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~---------~~i~~~P~~~i 105 (142)
|+.|..+|||+|.+....+.+. ++.+..+|++++.. +.++ .|.+++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999999877772 34444555554442 2222 36778999976
No 205
>PRK10824 glutaredoxin-4; Provisional
Probab=97.23 E-value=0.0022 Score=39.09 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=35.3
Q ss_pred HHHhhhcCCcEEEEEEC----CCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc--cHHHHHHcCCCCCCEEEE
Q psy7943 35 FQSSIEKHDHILVEFYA----PWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ--HTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 35 ~~~~~~~~~~~vv~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~P~~~i 105 (142)
.++.+++ .+++|+--+ +|||+|++....|.... ..+..+.++-+. ...+.+.-|-+.+|.++|
T Consensus 8 v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 8 IQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALSACG-------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHhc-CCEEEEECCCCCCCCCchHHHHHHHHHHcC-------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 3444544 444443333 59999999998887742 233344443221 123334446677888866
No 206
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.23 E-value=0.0038 Score=40.71 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCc--eEeeCcc-cccccccccchHHhhccce
Q psy7943 60 LVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS--IIEYGEV-TSVEYCYQRNWHKRAVTSV 136 (142)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~--~~~~~g~-~~~~~l~~~~~~~~~~~~~ 136 (142)
....+.++++.+. ..+.|+.++ +.+++++++++. |++++|+++. ...|.|. .+.++| .+|+....-+.
T Consensus 8 ~~~~f~~~A~~~~---~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l--~~fI~~~~~P~ 78 (184)
T PF13848_consen 8 LFEIFEEAAEKLK---GDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEEL--KKFIKKNSFPL 78 (184)
T ss_dssp HHHHHHHHHHHHT---TTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHH--HHHHHHHSSTS
T ss_pred HHHHHHHHHHhCc---CCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHH--HHHHHHhcccc
Confidence 4456778888887 468888776 677899999988 9999999843 6779998 799999 99999887665
Q ss_pred eee
Q psy7943 137 IIR 139 (142)
Q Consensus 137 ~~~ 139 (142)
+..
T Consensus 79 v~~ 81 (184)
T PF13848_consen 79 VPE 81 (184)
T ss_dssp CEE
T ss_pred ccc
Confidence 443
No 207
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.13 E-value=0.0019 Score=41.49 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=33.1
Q ss_pred cCCcEEEEEE-CCCChhhhhh-hHHHHHHHHHHhcCCC-ceEEEEeec
Q psy7943 41 KHDHILVEFY-APWCGHCKQL-VPEYSKAALQLATDGH-DIKLAKVDA 85 (142)
Q Consensus 41 ~~~~~vv~f~-~~~C~~C~~~-~~~~~~~~~~~~~~~~-~~~~~~vd~ 85 (142)
+++.++++|| +.||+.|... .+.+.+....+...+. .+..+..|-
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 4455555555 8899999999 9999999999876655 366666654
No 208
>PTZ00062 glutaredoxin; Provisional
Probab=97.13 E-value=0.0028 Score=42.52 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=29.3
Q ss_pred CCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHH----HHHcCCCCCCEEEE
Q psy7943 52 PWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTAL----AEQYGVRGYPTLKF 105 (142)
Q Consensus 52 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~i~~~P~~~i 105 (142)
|+|++|++....|.+. ++.+..+|+.++.++ .+.-+-+.+|.+++
T Consensus 126 p~C~~C~~~k~~L~~~---------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS---------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred CCChhHHHHHHHHHHc---------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 6999999998877752 334445566554433 33346667888875
No 209
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.10 E-value=0.0083 Score=35.80 Aligned_cols=88 Identities=20% Similarity=0.356 Sum_probs=62.3
Q ss_pred ChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC--
Q psy7943 31 TQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK-- 108 (142)
Q Consensus 31 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~-- 108 (142)
+.++++..+...+.++|-|+..--. .....+.+.+..++ ..+.|+... +..+.+++++ .|++++|++
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R---~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLR---ESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhh---hcCEEEEEC---hHHHHHhcCC--CCceEEEechh
Confidence 3556777777888888888876433 35567777888776 356676444 4566788888 688888843
Q ss_pred ------CceEeeCcccccccccccchHHh
Q psy7943 109 ------RSIIEYGEVTSVEYCYQRNWHKR 131 (142)
Q Consensus 109 ------~~~~~~~g~~~~~~l~~~~~~~~ 131 (142)
.+...|.|..+.+.| .+|+..
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l--~~fi~~ 102 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKI--KKFIRE 102 (104)
T ss_pred hhcccCcccccccCcCCHHHH--HHHHHh
Confidence 334558888888899 999865
No 210
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=97.06 E-value=0.013 Score=38.30 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=44.2
Q ss_pred CcEEEeChhhHHHhhhcCCcEEEEEECCCC-hhhhhhhHHHHHHHHHHhcCC--CceEEEEeeccc
Q psy7943 25 DGVLVLTQDNFQSSIEKHDHILVEFYAPWC-GHCKQLVPEYSKAALQLATDG--HDIKLAKVDATQ 87 (142)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C-~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~ 87 (142)
..+...+++.+....-+||+++|+|.-+.| ..|-.....+.++.+.+...+ ..+.++.+|.+.
T Consensus 35 f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~ 100 (174)
T PF02630_consen 35 FTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPER 100 (174)
T ss_dssp -EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTT
T ss_pred cEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCC
Confidence 344445555555544579999999999999 679999999999988877543 356677777653
No 211
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.97 E-value=0.0094 Score=39.21 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=29.5
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEe
Q psy7943 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83 (142)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (142)
+|.+|+...||+|-...+.+.++.+.+.+ ..+.+..+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~--~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD--VEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT--CEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CcEEEecc
Confidence 47789999999999999999999998832 45555444
No 212
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0064 Score=41.79 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=27.7
Q ss_pred HHHHHcCCCCCCEEEEEeCCceEeeCcccccccccccchHHhh
Q psy7943 90 ALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 90 ~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~l~~~~~~~~~ 132 (142)
++.+++|+.++|++++-++ .+.|..+.+++ ...+...
T Consensus 206 ~~a~~~gv~gTPt~~v~~~----~~~g~~~~~~l--~~~i~~~ 242 (244)
T COG1651 206 KLAQQLGVNGTPTFIVNGK----LVPGLPDLDEL--KAIIDEA 242 (244)
T ss_pred HHHHhcCCCcCCeEEECCe----eecCCCCHHHH--HHHHHHh
Confidence 4667889999999988543 67777777888 6666554
No 213
>KOG3170|consensus
Probab=96.80 E-value=0.0072 Score=40.14 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=62.5
Q ss_pred CCcEEEeChhhHHHhhh---cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCC
Q psy7943 24 EDGVLVLTQDNFQSSIE---KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGY 100 (142)
Q Consensus 24 ~~~~~~~~~~~~~~~~~---~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~ 100 (142)
-+.+..++..++.+-+. ++-.+||+.|...-+.|.-+..-+..++..|+ .+.|+++-.... ...|-=...
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp----~iKFVki~at~c---IpNYPe~nl 162 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP----QIKFVKIPATTC---IPNYPESNL 162 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC----cceEEecccccc---cCCCcccCC
Confidence 34678888888877432 36669999999999999999999999999997 778887754433 233444578
Q ss_pred CEEEEEeCCc
Q psy7943 101 PTLKFFKKRS 110 (142)
Q Consensus 101 P~~~i~~~~~ 110 (142)
||+++|..|-
T Consensus 163 PTl~VY~~G~ 172 (240)
T KOG3170|consen 163 PTLLVYHHGA 172 (240)
T ss_pred CeEEEeecch
Confidence 9999999886
No 214
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.48 E-value=0.019 Score=33.95 Aligned_cols=93 Identities=16% Similarity=0.263 Sum_probs=62.7
Q ss_pred hhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc--cHHHHHHcCCC----CCCEE-E
Q psy7943 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ--HTALAEQYGVR----GYPTL-K 104 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~----~~P~~-~ 104 (142)
-.+|...++..+.++|.|..+ -..-......+.+.++...+. =.+.-+||+. ..++|+++.+. .-|.. .
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks-~k~a~~~Lk~~~~~A~~vkG~---gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk 84 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKS-AKSAEALLKLLSDVAQAVKGQ---GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK 84 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecc-hhhHHHHHHHHHHHHHHhcCc---eeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence 467888888777777766655 334445555777777777743 3455566664 78999999998 55544 4
Q ss_pred EEeCCceE-eeCcccccccccccchHH
Q psy7943 105 FFKKRSII-EYGEVTSVEYCYQRNWHK 130 (142)
Q Consensus 105 i~~~~~~~-~~~g~~~~~~l~~~~~~~ 130 (142)
.|.+|.-. .|....+...+ ..|+.
T Consensus 85 HYKdG~fHkdYdR~~t~kSm--v~Flr 109 (112)
T cd03067 85 HYKDGDFHTEYNRQLTFKSM--VAFLR 109 (112)
T ss_pred cccCCCccccccchhhHHHH--HHHhh
Confidence 56666533 38777777777 77764
No 215
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.36 E-value=0.073 Score=31.53 Aligned_cols=89 Identities=13% Similarity=0.220 Sum_probs=62.4
Q ss_pred ChhhHHHhhh-cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC-
Q psy7943 31 TQDNFQSSIE-KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK- 108 (142)
Q Consensus 31 ~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~- 108 (142)
+.++++..+. ++..++|-|+..--+ .....+.+.+..++ ..+.|.... +.++.+.+++. .|.++++++
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R---~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~ 76 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFH---PYIKFFATF---DSKVAKKLGLK-MNEVDFYEPF 76 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhh---cCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCC
Confidence 4566888888 788888888876433 35556778888886 356665433 45667777774 798988865
Q ss_pred -CceEee-CcccccccccccchHHh
Q psy7943 109 -RSIIEY-GEVTSVEYCYQRNWHKR 131 (142)
Q Consensus 109 -~~~~~~-~g~~~~~~l~~~~~~~~ 131 (142)
.+...| .|..+.+.| .+|+..
T Consensus 77 ~e~~~~y~~g~~~~~~l--~~fi~~ 99 (102)
T cd03066 77 MEEPVTIPDKPYSEEEL--VDFVEE 99 (102)
T ss_pred CCCCcccCCCCCCHHHH--HHHHHH
Confidence 334558 777788899 999864
No 216
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.26 E-value=0.064 Score=36.18 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=42.3
Q ss_pred EeChhhHHHhhhcCCcEEEEEECCCCh-hhhhhhHHHHHHHHHHh-cC--CCceEEEEeeccc
Q psy7943 29 VLTQDNFQSSIEKHDHILVEFYAPWCG-HCKQLVPEYSKAALQLA-TD--GHDIKLAKVDATQ 87 (142)
Q Consensus 29 ~~~~~~~~~~~~~~~~~vv~f~~~~C~-~C~~~~~~~~~~~~~~~-~~--~~~~~~~~vd~~~ 87 (142)
..+++.+....-++++++|+|.=+.|| .|-.....+.++.+... .. ...++++.+|.+.
T Consensus 54 d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPer 116 (207)
T COG1999 54 DQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPER 116 (207)
T ss_pred cCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCC
Confidence 333444555555899999999988885 69988888888887776 32 3347788888653
No 217
>KOG2640|consensus
Probab=95.97 E-value=0.0018 Score=45.62 Aligned_cols=88 Identities=18% Similarity=0.386 Sum_probs=68.7
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEee-ccccHHHHHHcCCCCCCEEEEEeCCceEeeCcccc
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVD-ATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTS 119 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd-~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~ 119 (142)
+..++-+.||+.|||..++..|.+.-....+. .+....++ .....+...+|++.+.|++.+....-...|.|.++
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~----~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~ 150 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS----SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERD 150 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcc----ccccccHHHHhhcccchhccccccCCcceeeccccchhhccccc
Confidence 36678899999999999999998887766665 22222222 12335678899999999999998877888999999
Q ss_pred cccccccchHHhhcc
Q psy7943 120 VEYCYQRNWHKRAVT 134 (142)
Q Consensus 120 ~~~l~~~~~~~~~~~ 134 (142)
...+ .++..+.+.
T Consensus 151 l~sL--v~fy~~i~~ 163 (319)
T KOG2640|consen 151 LASL--VNFYTEITP 163 (319)
T ss_pred HHHH--HHHHHhhcc
Confidence 9999 888888764
No 218
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.93 E-value=0.049 Score=34.72 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=32.8
Q ss_pred EEEEECC------CChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH----HHHHHcCC----CCCCEEEE
Q psy7943 46 LVEFYAP------WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT----ALAEQYGV----RGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i----~~~P~~~i 105 (142)
|+.|+++ +|++|.+....|... ++.+-..|.+.+. ++.+.++- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~---------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF---------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4456666 899999998877663 3445556665443 34444454 57888866
No 219
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=95.93 E-value=0.11 Score=30.54 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=49.1
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCc--eEeeCcccc
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS--IIEYGEVTS 119 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~--~~~~~g~~~ 119 (142)
+.+.++.|.... +.|......+++++.... .+.+...+... ..|++.+.++|. .++|.|...
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd----kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~ 82 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLSD----KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPM 82 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhCC----ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCC
Confidence 555566666655 999999988888887654 44443222111 479999988764 588888888
Q ss_pred cccccccchHHh
Q psy7943 120 VEYCYQRNWHKR 131 (142)
Q Consensus 120 ~~~l~~~~~~~~ 131 (142)
-.++ ..++..
T Consensus 83 GhEf--~Slila 92 (94)
T cd02974 83 GHEF--TSLVLA 92 (94)
T ss_pred chhH--HHHHHH
Confidence 8777 766654
No 220
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=95.66 E-value=0.15 Score=32.05 Aligned_cols=96 Identities=10% Similarity=0.054 Sum_probs=61.6
Q ss_pred hhHHHh----hhcCCcEEEEEECCCChhhhhhhHHHHHHH---HHHhcCCCceEEEEeeccccH----------------
Q psy7943 33 DNFQSS----IEKHDHILVEFYAPWCGHCKQLVPEYSKAA---LQLATDGHDIKLAKVDATQHT---------------- 89 (142)
Q Consensus 33 ~~~~~~----~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~---~~~~~~~~~~~~~~vd~~~~~---------------- 89 (142)
+.++.+ .+..|+.+||.+++.-+.+..+-..+.... +-.. .++.+-.-|....+
T Consensus 8 ~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~---~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~ 84 (136)
T cd02990 8 AAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS---QNFITWGWDMTKESNKARFLSSCTRHFGSV 84 (136)
T ss_pred HHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH---cCEEEEeeeccchhhhhHHHHhhhhhhhHH
Confidence 445555 567899999999997655555444432221 1222 46777777765532
Q ss_pred --HHHHHcCCCCCCEEEEEeCCc----eEe-eCcccccccccccchHHhhc
Q psy7943 90 --ALAEQYGVRGYPTLKFFKKRS----IIE-YGEVTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 90 --~~~~~~~i~~~P~~~i~~~~~----~~~-~~g~~~~~~l~~~~~~~~~~ 133 (142)
...+.++.+.+|.+.++-... .+. ..|..+++++ ..-+...+
T Consensus 85 a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~el--l~~L~~~v 133 (136)
T cd02990 85 AAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDEL--LMRLIEAM 133 (136)
T ss_pred HHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHH--HHHHHHHH
Confidence 345667889999998775432 333 7898899888 66665543
No 221
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.19 E-value=0.21 Score=27.74 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=51.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCc
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS 110 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~ 110 (142)
+..|-+..-+.++.....+.++.+.+. +..+..-.+|..+++++.+.+++-.+||++-..++-
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l--~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P~P 66 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELL--GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLPPP 66 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhc--CCcEEEEEEEcccCHhHHhhCCEEEechhhhcCCCC
Confidence 445556666899999999999988876 368889999999999999999999999987554443
No 222
>KOG2792|consensus
Probab=95.01 E-value=0.24 Score=34.43 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=62.1
Q ss_pred hhcCCcEEEEEECCCCh-hhhhhhHHHHHHHHHHhcCCCc---eEEEEeecccc--------------------------
Q psy7943 39 IEKHDHILVEFYAPWCG-HCKQLVPEYSKAALQLATDGHD---IKLAKVDATQH-------------------------- 88 (142)
Q Consensus 39 ~~~~~~~vv~f~~~~C~-~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-------------------------- 88 (142)
.-.||-+++||.=+.|| -|-.....+.+........... -.|+.+|.+.+
T Consensus 136 df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqv 215 (280)
T KOG2792|consen 136 DFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQV 215 (280)
T ss_pred ccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHH
Confidence 34689999999999996 4888877777776666543332 38899997533
Q ss_pred HHHHHHcCCCCC--C-------------EEEEEeCCceE-e-eCcccccccccccchHHhhcc
Q psy7943 89 TALAEQYGVRGY--P-------------TLKFFKKRSII-E-YGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 89 ~~~~~~~~i~~~--P-------------~~~i~~~~~~~-~-~~g~~~~~~l~~~~~~~~~~~ 134 (142)
.++|++|++..- | .++++++.|.. . |.-..+++++ .+-+.+.+.
T Consensus 216 k~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~--~~~I~~~v~ 276 (280)
T KOG2792|consen 216 KQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADEL--ADSILKHVA 276 (280)
T ss_pred HHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHH--HHHHHHHHH
Confidence 267888888532 2 24455666644 4 4555677887 666655543
No 223
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.86 E-value=0.36 Score=30.36 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=46.2
Q ss_pred cEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCC---CCEEEEEeCCceEeeCccccc
Q psy7943 44 HILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRG---YPTLKFFKKRSIIEYGEVTSV 120 (142)
Q Consensus 44 ~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~---~P~~~i~~~~~~~~~~g~~~~ 120 (142)
..++.|++|+|+=|......++. ..|..-.+..+.-..+.++++|+. --.+.+++ |. ...|-...
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~---------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~-Gy--~vEGHVPa 93 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA---------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVIN-GY--YVEGHVPA 93 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh---------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEEc-CE--EEeccCCH
Confidence 34778999999999887765542 255555566666677788888862 22333333 21 23455566
Q ss_pred ccccccchHHhh
Q psy7943 121 EYCYQRNWHKRA 132 (142)
Q Consensus 121 ~~l~~~~~~~~~ 132 (142)
+++ ..++.+.
T Consensus 94 ~aI--~~ll~~~ 103 (149)
T COG3019 94 EAI--ARLLAEK 103 (149)
T ss_pred HHH--HHHHhCC
Confidence 666 6655544
No 224
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=94.60 E-value=0.35 Score=26.31 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=33.6
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc-cHHHHHHcCCCCCCEEEE
Q psy7943 47 VEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-HTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i~~~P~~~i 105 (142)
..|+.+||++|++..-.+... +..+..+.+|... ..++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-------gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-------GITVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-------CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 357789999999887655542 1345556666543 345555556668999853
No 225
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=94.58 E-value=0.55 Score=32.65 Aligned_cols=61 Identities=11% Similarity=-0.008 Sum_probs=37.4
Q ss_pred hhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC
Q psy7943 38 SIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108 (142)
Q Consensus 38 ~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~ 108 (142)
....||+.+++..+.|||.|....=.+-..-.++. ++ -...+.... .-.-..+|++.+..-
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG----n~-~l~~~~S~~-----~d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFG----NF-SLEYHYSDP-----YDNYPNTPTLIFNNY 114 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcC----Ce-eeEEeecCc-----ccCCCCCCeEEEecC
Confidence 44679999999999999999887755544444444 33 121111111 112246888877655
No 226
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.54 E-value=0.047 Score=32.53 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=17.2
Q ss_pred EEEECCCChhhhhhhHHHHH
Q psy7943 47 VEFYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~ 66 (142)
..|+.++|+.|++....+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 56899999999999877766
No 227
>KOG2507|consensus
Probab=94.50 E-value=0.25 Score=36.70 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=60.7
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc--cHHHHHHcCCCCCCEEEEEeCCc-eEe-eCc
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ--HTALAEQYGVRGYPTLKFFKKRS-IIE-YGE 116 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~P~~~i~~~~~-~~~-~~g 116 (142)
.++.++|.|-+..-.....+.....+...........++-++++... ..++..-|.+-.+|+++++...| .+. ..|
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg 96 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITG 96 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeec
Confidence 45566666777777777777754333332222222467777777764 45788889999999999998766 555 678
Q ss_pred ccccccccccchHHhh
Q psy7943 117 VTSVEYCYQRNWHKRA 132 (142)
Q Consensus 117 ~~~~~~l~~~~~~~~~ 132 (142)
....++| ..-|.+.
T Consensus 97 ~v~adeL--~~~i~Kv 110 (506)
T KOG2507|consen 97 FVTADEL--ASSIEKV 110 (506)
T ss_pred cccHHHH--HHHHHHH
Confidence 8888888 6655554
No 228
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=94.43 E-value=0.26 Score=28.47 Aligned_cols=74 Identities=15% Similarity=0.034 Sum_probs=59.6
Q ss_pred cEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEeeCcccc
Q psy7943 44 HILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTS 119 (142)
Q Consensus 44 ~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~ 119 (142)
.++=.|.+..-+.++.....+.++.+..-. +.+..-.+|..+++++++.+++-.+||++-.-++-.-+..|..+
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~--g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdls 77 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQ--GVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLS 77 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeecccc
Confidence 445567788889999999999999887653 35888889999999999999999999988766665555667664
No 229
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=94.42 E-value=0.6 Score=27.98 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=58.0
Q ss_pred ChhhHHHhhhcC-CcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCC
Q psy7943 31 TQDNFQSSIEKH-DHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKR 109 (142)
Q Consensus 31 ~~~~~~~~~~~~-~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~ 109 (142)
+.++++..+... +.+||-|+..--+ .....+.+.+..++ ..+.|.... +..+.+++++. -|.+++|++.
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~R---dd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~ 76 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLR---EDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPE 76 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcc---cCCEEEEEC---hHHHHHhcCCC-CCceEEECcH
Confidence 455677776666 7777777766433 35566778888776 456676443 45677788875 6778888654
Q ss_pred c--------eEeeCcc-ccccc-ccccchHHh
Q psy7943 110 S--------IIEYGEV-TSVEY-CYQRNWHKR 131 (142)
Q Consensus 110 ~--------~~~~~g~-~~~~~-l~~~~~~~~ 131 (142)
. ...|.|. .+.++ | .+|+.+
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~--~~f~~~ 106 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDEL--KDFFKE 106 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHH--HHHHhc
Confidence 4 3446666 45544 8 888754
No 230
>PRK09301 circadian clock protein KaiB; Provisional
Probab=94.32 E-value=0.26 Score=29.34 Aligned_cols=76 Identities=16% Similarity=0.038 Sum_probs=61.7
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEeeCcccc
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTS 119 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~ 119 (142)
+..++=.|.+..-+.++.....+.++.+.+-. +.+..-.+|..+++++++.+++-.+||++-.-+.-.-+..|..+
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~--g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDls 80 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK--GVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLS 80 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeecccc
Confidence 45566677788899999999999999887653 35888889999999999999999999987666665555667664
No 231
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.04 E-value=0.48 Score=36.40 Aligned_cols=74 Identities=7% Similarity=-0.045 Sum_probs=49.9
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCc--eEeeCcccc
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS--IIEYGEVTS 119 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~--~~~~~g~~~ 119 (142)
.+++-+.++.+.|+.|..+...++++++... .+.+..-+.. ...|++.+.++|. .++|.|...
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~----~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~ 82 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLSD----KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPM 82 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhCC----ceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCc
Confidence 4444455555589999999999999887654 3443322211 3479999987654 677888887
Q ss_pred cccccccchHHhh
Q psy7943 120 VEYCYQRNWHKRA 132 (142)
Q Consensus 120 ~~~l~~~~~~~~~ 132 (142)
-.++ ..|+...
T Consensus 83 g~Ef--~s~i~~i 93 (517)
T PRK15317 83 GHEF--TSLVLAL 93 (517)
T ss_pred cHHH--HHHHHHH
Confidence 7777 7776655
No 232
>KOG0855|consensus
Probab=93.87 E-value=0.27 Score=31.97 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=44.4
Q ss_pred cCCcEEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc-------------------ccHHHHHHcCCCCC
Q psy7943 41 KHDHILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT-------------------QHTALAEQYGVRGY 100 (142)
Q Consensus 41 ~~~~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------~~~~~~~~~~i~~~ 100 (142)
.++++|++|| +..-|-|.+..=-|.+..+.++.....+.-...|-. ...++.+.+|....
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa~k~ 168 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKDLGAPKD 168 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHHhCCCCC
Confidence 3557888888 557788888877777777666643334444444432 23466777777654
Q ss_pred C-------EEEEEeCCc
Q psy7943 101 P-------TLKFFKKRS 110 (142)
Q Consensus 101 P-------~~~i~~~~~ 110 (142)
| +.+||++|+
T Consensus 169 p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 169 PFGGLPGRSHYIFDKGG 185 (211)
T ss_pred CCCCcccceEEEEecCC
Confidence 4 466777765
No 233
>KOG2244|consensus
Probab=93.78 E-value=0.045 Score=41.83 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=60.9
Q ss_pred CcEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHH-HHH--HHHHHhcCCCceEEEEeeccccHHHHH--------
Q psy7943 25 DGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPE-YSK--AALQLATDGHDIKLAKVDATQHTALAE-------- 93 (142)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-~~~--~~~~~~~~~~~~~~~~vd~~~~~~~~~-------- 93 (142)
..+.+...+.|+++...+|+.++-..-+.|++|..++.. ++. ..+.+. .+++-++||-++-+.+.+
T Consensus 95 vdwypwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~iln---enfv~ikVDREERPDVDK~YM~Fv~a 171 (786)
T KOG2244|consen 95 VDWYPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILN---ENFVKIKVDREERPDVDKLYMAFVVA 171 (786)
T ss_pred cccCcchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHh---hhhhhhccChhhcCchHHHHHHHHHh
Confidence 345566788899999999999999999999999998875 322 344443 578888888877654443
Q ss_pred HcCCCCCCEEEEEeCC
Q psy7943 94 QYGVRGYPTLKFFKKR 109 (142)
Q Consensus 94 ~~~i~~~P~~~i~~~~ 109 (142)
..|-.+.|.-+++-++
T Consensus 172 ssg~GGWPmsV~LTPd 187 (786)
T KOG2244|consen 172 SSGGGGWPMSVFLTPD 187 (786)
T ss_pred ccCCCCCceeEEeCCC
Confidence 4466789988887665
No 234
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.77 E-value=0.082 Score=35.99 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=36.0
Q ss_pred HHHHHcCCCCCCEEEEEeCCceEeeCcccccccccccchHHhhcccee
Q psy7943 90 ALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRAVTSVI 137 (142)
Q Consensus 90 ~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~ 137 (142)
+..++.||+++|++++ ++.+...|..+.+.+ ...|.+.++...
T Consensus 175 ~~A~e~gI~gVP~fv~---d~~~~V~Gaq~~~v~--~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF---DGKYAVSGAQPYDVL--EDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE---cCcEeecCCCCHHHH--HHHHHHHHhccc
Confidence 5678999999999999 566778899999999 888888876543
No 235
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=93.60 E-value=0.11 Score=31.39 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=31.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc--cHHHHHHcCCCCCCEEEEEeCCc
Q psy7943 47 VEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ--HTALAEQYGVRGYPTLKFFKKRS 110 (142)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~P~~~i~~~~~ 110 (142)
..|+.++|+.|++....+.+. +..+.++.+..+. ..++.+-++..+.|.--+++..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~ 60 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSG 60 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCC
Confidence 468899999999999877662 1234444433222 23344333444455544455443
No 236
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.48 Score=31.65 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=29.8
Q ss_pred HHHHHcCCCCCCEEEEEeCCceEee-Cc--ccccccccccchHHhhc
Q psy7943 90 ALAEQYGVRGYPTLKFFKKRSIIEY-GE--VTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 90 ~~~~~~~i~~~P~~~i~~~~~~~~~-~g--~~~~~~l~~~~~~~~~~ 133 (142)
.+++++++.++||+.+-++|+.... .| ..+.+.+ ..++.+.+
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~--~arl~~~~ 209 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAW--LARLAQRL 209 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHH--HHHHHHHH
Confidence 4778999999999999998886664 34 2345566 55555543
No 237
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=93.46 E-value=0.18 Score=31.49 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=17.4
Q ss_pred EEEEECCCChhhhhhhHHHHH
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~ 66 (142)
+..|+.++|+.|++....+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 457889999999998876665
No 238
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=93.38 E-value=0.48 Score=25.72 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=30.5
Q ss_pred EEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEE
Q psy7943 48 EFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i 105 (142)
.|+.++|++|++..-.+... +..+..+.+|..+.....+..+-..+|++..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-------gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~ 53 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-------NIPVEQIILQNDDEATPIRMIGAKQVPILEK 53 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-------CCCeEEEECCCCchHHHHHhcCCCccCEEEe
Confidence 46788999999877655542 2344555566443333334444456888743
No 239
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.12 E-value=0.83 Score=35.12 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=49.3
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCc--eEeeCcccc
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS--IIEYGEVTS 119 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~--~~~~~g~~~ 119 (142)
.+++-+.++.+.|+.|..+...+++++.... .+.+..-+.+ ....|++.++.+|. .++|.|...
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~----ki~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~P~ 83 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLSD----KISLTQNTAD----------TLRKPSFTILRDGADTGIRFAGIPG 83 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhCC----CeEEEEecCC----------cCCCCeEEEecCCcccceEEEecCC
Confidence 4444444454479999999988888877654 4444332221 13469999886654 578888887
Q ss_pred cccccccchHHhh
Q psy7943 120 VEYCYQRNWHKRA 132 (142)
Q Consensus 120 ~~~l~~~~~~~~~ 132 (142)
-.++ ..|+...
T Consensus 84 g~Ef--~s~i~~i 94 (515)
T TIGR03140 84 GHEF--TSLVLAI 94 (515)
T ss_pred cHHH--HHHHHHH
Confidence 7777 6666554
No 240
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=93.00 E-value=0.25 Score=33.82 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=41.9
Q ss_pred hcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCC-ceEEEEeeccc
Q psy7943 40 EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGH-DIKLAKVDATQ 87 (142)
Q Consensus 40 ~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~ 87 (142)
..|+++||-+-..+|..|......++.+...++..+. ++.|+.||-..
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 3689999999999999999999999999988876655 89999999653
No 241
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=1.1 Score=29.92 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=63.2
Q ss_pred CCcEEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--------------------------ccHHHHHH
Q psy7943 42 HDHILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--------------------------QHTALAEQ 94 (142)
Q Consensus 42 ~~~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--------------------------~~~~~~~~ 94 (142)
++-+++.|| ++.-+.|-.....+.+....++..+..+..+.+|-. .+.++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 466677676 667889999999999999999887777888888752 34588999
Q ss_pred cCCCC------CCEEEEEeCCceEee------CcccccccccccchHHh
Q psy7943 95 YGVRG------YPTLKFFKKRSIIEY------GEVTSVEYCYQRNWHKR 131 (142)
Q Consensus 95 ~~i~~------~P~~~i~~~~~~~~~------~g~~~~~~l~~~~~~~~ 131 (142)
||+-. +-.+++++++|.+++ .-+++.+++ ...++.
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEi--lR~idA 159 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEI--LRVIDA 159 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHH--HHHHHH
Confidence 98853 335788898886653 224566666 555443
No 242
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=92.82 E-value=0.17 Score=30.32 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=17.2
Q ss_pred EEEECCCChhhhhhhHHHHH
Q psy7943 47 VEFYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~ 66 (142)
..|+.++|+.|++....+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 56889999999999887766
No 243
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=92.72 E-value=0.25 Score=30.02 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=17.2
Q ss_pred EEEECCCChhhhhhhHHHHH
Q psy7943 47 VEFYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~ 66 (142)
..|+.++|+.|++....+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA 21 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 35889999999999987776
No 244
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=92.61 E-value=0.99 Score=24.84 Aligned_cols=53 Identities=9% Similarity=0.178 Sum_probs=32.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFF 106 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~ 106 (142)
+..|+.+.|+.|++..-.+.... ..+....+|......+ +.-+-..+|+++.-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~g-------i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHG-------IPYEVVEVNPVSRKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC-------CceEEEECCchhHHHH-HHhCCCccCEEEEC
Confidence 34577889999999986655531 2344455554333333 23344579988653
No 245
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=92.56 E-value=1 Score=24.94 Aligned_cols=53 Identities=15% Similarity=0.091 Sum_probs=30.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc--cHHHHHHcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ--HTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~P~~~i 105 (142)
+..|+.++|++|++..-.+.... ..+....++... ..++.+.-+...+|+++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g-------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE-------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC-------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 34577789999998886665532 233444444322 233443334467898743
No 246
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.50 E-value=0.22 Score=30.18 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=26.0
Q ss_pred CcEEEEEECCCChhhhhhhHHHHHHHHHHh
Q psy7943 43 DHILVEFYAPWCGHCKQLVPEYSKAALQLA 72 (142)
Q Consensus 43 ~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~ 72 (142)
|.+++.|..|-|+-|+.....+.++...|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568899999999999999999988777664
No 247
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=92.21 E-value=0.69 Score=24.25 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=32.3
Q ss_pred EEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH--HHHHHcCCCCCCEEEE
Q psy7943 48 EFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT--ALAEQYGVRGYPTLKF 105 (142)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~i~~~P~~~i 105 (142)
.|+.++|+.|++..-.+... +..+....++..... ++.+..+...+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-------GLPYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-------CCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 47788999999887666553 134555555544322 2455566678898754
No 248
>PRK12559 transcriptional regulator Spx; Provisional
Probab=92.07 E-value=0.31 Score=30.42 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=17.5
Q ss_pred EEEEECCCChhhhhhhHHHHH
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~ 66 (142)
+..|+.++|+.|++....+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 567889999999998876665
No 249
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.7 Score=25.85 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=17.5
Q ss_pred EEEECCCChhhhhhhHHHHHH
Q psy7943 47 VEFYAPWCGHCKQLVPEYSKA 67 (142)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~~ 67 (142)
+.|++..||.|..+...+..+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeeccccCcchHHHHHHHHHc
Confidence 679999999999888777664
No 250
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=91.69 E-value=0.14 Score=22.22 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=12.4
Q ss_pred CchHHHHHHHHHHHHhhc
Q psy7943 1 MRRLSLLFLLISPLVVFA 18 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~ 18 (142)
|||+++.++.++.++.++
T Consensus 7 mKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 488888777777655543
No 251
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=91.66 E-value=0.4 Score=29.07 Aligned_cols=21 Identities=14% Similarity=0.450 Sum_probs=17.4
Q ss_pred EEEEECCCChhhhhhhHHHHH
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~ 66 (142)
+..|+.++|+.|++....+.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~ 22 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE 22 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 446889999999998877766
No 252
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=91.61 E-value=0.21 Score=31.12 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=21.0
Q ss_pred cHHHHHHcCCCCCCEEEEEeCCc
Q psy7943 88 HTALAEQYGVRGYPTLKFFKKRS 110 (142)
Q Consensus 88 ~~~~~~~~~i~~~P~~~i~~~~~ 110 (142)
++.+.++|+|+.+|++++.+++.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCC
Confidence 58999999999999999998874
No 253
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=91.20 E-value=1.4 Score=23.70 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=32.6
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc----ccHHHHHHcCCCCCCEEEE
Q psy7943 47 VEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT----QHTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~i~~~P~~~i 105 (142)
..|+.++|++|++..-.+.... ..+....+|.. ....+.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~-------l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKG-------IDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcC-------CCceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 3577889999999887665532 23444455542 2234555555567899865
No 254
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=91.09 E-value=1.6 Score=26.46 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC
Q psy7943 59 QLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108 (142)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~ 108 (142)
.+.+....+.+........ .-+.+ ++.+.++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~-~~v~I----dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC-PGVQI----DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC-cceeE----ChhHHhhCCceEcCEEEEEcC
Confidence 5666666655555432222 23334 488999999999999999888
No 255
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=90.06 E-value=0.6 Score=29.16 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=16.8
Q ss_pred EEEEECCCChhhhhhhHHHHH
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~ 66 (142)
+..|+.++|+.|++....+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 456889999999998876655
No 256
>KOG0852|consensus
Probab=89.87 E-value=2.3 Score=28.02 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=55.6
Q ss_pred hcCCcEEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc--------------------------ccHHHH
Q psy7943 40 EKHDHILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--------------------------QHTALA 92 (142)
Q Consensus 40 ~~~~~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--------------------------~~~~~~ 92 (142)
-.++.+++.|| .++--.|-.....+.+.+..++..+..+..+.+|-. .+.+++
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Is 110 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEIS 110 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhH
Confidence 36788888888 456667777778888888888888888888888863 345899
Q ss_pred HHcCCC----C--CCEEEEEeCCceEe
Q psy7943 93 EQYGVR----G--YPTLKFFKKRSIIE 113 (142)
Q Consensus 93 ~~~~i~----~--~P~~~i~~~~~~~~ 113 (142)
+.||+- + +--++|+++.|.++
T Consensus 111 rdyGvL~~~~G~~lRglfIId~~gi~R 137 (196)
T KOG0852|consen 111 RDYGVLKEDEGIALRGLFIIDPDGILR 137 (196)
T ss_pred HhcCceecCCCcceeeeEEEccccceE
Confidence 999884 3 34577888877554
No 257
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=89.41 E-value=2.2 Score=23.01 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=31.6
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc-cHHHHHHcCCCCCCEEE
Q psy7943 47 VEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-HTALAEQYGVRGYPTLK 104 (142)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i~~~P~~~ 104 (142)
..|+.++|+.|++..-.+.... ..+....+|... ..++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~g-------i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKG-------VSVEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcC-------CccEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 4578889999999876654432 344455555443 23455545556789774
No 258
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=88.69 E-value=3.5 Score=26.00 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=47.4
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCC-CEEEEEeCCc
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGY-PTLKFFKKRS 110 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~-P~~~i~~~~~ 110 (142)
-+++..|.+|-..|+-|-.....+.+. +.+..+.|..+..+....+.+..++.-- +-.+++.+++
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~-----D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g 70 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRR-----DQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAG 70 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHh-----ccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCC
Confidence 356777889999999999976655542 3346899999998888888888888643 4445454443
No 259
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.55 E-value=1.5 Score=32.33 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=58.2
Q ss_pred eChhhHHHhhh-cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeC
Q psy7943 30 LTQDNFQSSIE-KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108 (142)
Q Consensus 30 ~~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~ 108 (142)
.+.+-+++... .+...+=-|++-.|+.|-.....++-.+-.. .++.-..+|..--+.-.+.-+|-++|++++ +
T Consensus 103 ~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlN----p~I~H~~IdGa~Fq~Evear~IMaVPtvfl--n 176 (520)
T COG3634 103 EDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLN----PRIKHTAIDGALFQDEVEARNIMAVPTVFL--N 176 (520)
T ss_pred hhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcC----CCceeEEecchhhHhHHHhccceecceEEE--c
Confidence 33444555443 5788888899999999999888887765543 478888888665444455568889999865 3
Q ss_pred CceEeeCcccccccc
Q psy7943 109 RSIIEYGEVTSVEYC 123 (142)
Q Consensus 109 ~~~~~~~g~~~~~~l 123 (142)
|+ .--+|..+.+++
T Consensus 177 Ge-~fg~GRmtleei 190 (520)
T COG3634 177 GE-EFGQGRMTLEEI 190 (520)
T ss_pred ch-hhcccceeHHHH
Confidence 32 222455555555
No 260
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=87.87 E-value=0.53 Score=31.14 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=26.0
Q ss_pred HHHHHHcCCCCCCEEEEEeCCceEeeCcccccccccccchH
Q psy7943 89 TALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 89 ~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~l~~~~~~ 129 (142)
.+...+.|+.++|++++ + +.....|..+.+.+ .+.+
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~-g~~~~~G~~~~~~~--~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--N-GKYAVSGAQPPEVF--LQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--C-CeEeecCCCCHHHH--HHHh
Confidence 35667889999999988 3 33456788887777 5543
No 261
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=86.42 E-value=3.6 Score=22.19 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=32.4
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc----cHHHHHHcCCCCCCEEE
Q psy7943 47 VEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ----HTALAEQYGVRGYPTLK 104 (142)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~i~~~P~~~ 104 (142)
..|+.++|+.|++..-.+... +..+....+|..+ ..++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-------gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-------GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-------CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 357889999999877655553 2345555666432 24555555555789995
No 262
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=86.41 E-value=4.4 Score=23.11 Aligned_cols=53 Identities=8% Similarity=0.130 Sum_probs=33.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc-HHHHHHcCCCCCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH-TALAEQYGVRGYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~~P~~~i 105 (142)
+..|+.+.|++|++..-.+... +..+..+.+|.... ..+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-------gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-------NIPHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-------CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 5556788899999876555442 23455566665433 33555545567899864
No 263
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=85.24 E-value=2.4 Score=25.38 Aligned_cols=57 Identities=18% Similarity=0.388 Sum_probs=37.7
Q ss_pred EECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCC--CCCEEEEE-eCCc
Q psy7943 49 FYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVR--GYPTLKFF-KKRS 110 (142)
Q Consensus 49 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~--~~P~~~i~-~~~~ 110 (142)
||-.+|+-|......+... +....+.++.+.-....++.+.++++ ...+.+.+ ++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-----d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-----DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-----CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 7889999999999877765 22357888877545555666667765 34444443 4444
No 264
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=83.26 E-value=5.6 Score=21.72 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=42.7
Q ss_pred EECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc-HHHHHHcCCCCCCEEEEEeCCceEeeCcccccccccccc
Q psy7943 49 FYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH-TALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRN 127 (142)
Q Consensus 49 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~l~~~~ 127 (142)
|+.++|++|++..-.+... +..+.+..++..+. ..+.+......+|++. .+|..+ .+...| .+
T Consensus 2 y~~~~Sp~~~kv~~~l~~~-------~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l-----~dS~~I--~~ 65 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEK-------GIPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL-----TDSAAI--IE 65 (75)
T ss_dssp EEETTSHHHHHHHHHHHHH-------TEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE-----ESHHHH--HH
T ss_pred CCcCCChHHHHHHHHHHHc-------CCeEEEeccCcccchhHHHhhcccccceEEE--ECCEEE-----eCHHHH--HH
Confidence 6789999999987655442 13566667766553 5566666667899996 444322 234455 55
Q ss_pred hHHhhc
Q psy7943 128 WHKRAV 133 (142)
Q Consensus 128 ~~~~~~ 133 (142)
++.+..
T Consensus 66 yL~~~~ 71 (75)
T PF13417_consen 66 YLEERY 71 (75)
T ss_dssp HHHHHS
T ss_pred HHHHHc
Confidence 555543
No 265
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=83.22 E-value=1.6 Score=26.48 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=17.3
Q ss_pred EEEEECCCChhhhhhhHHHHH
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~ 66 (142)
+..|+.+.|+.|++....+.+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 456889999999998876666
No 266
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=82.85 E-value=8.5 Score=23.48 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=46.1
Q ss_pred EEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEE-EeeccccH-----------HHHHHcCCCCC--CEEEEEeCC
Q psy7943 45 ILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLA-KVDATQHT-----------ALAEQYGVRGY--PTLKFFKKR 109 (142)
Q Consensus 45 ~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~-~vd~~~~~-----------~~~~~~~i~~~--P~~~i~~~~ 109 (142)
.+|.|. +..-+.=+.....+.+....+... +++++ .++-.... .+.++|++..- -.+++=++|
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG 89 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDG 89 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCC
Confidence 344344 334455555666666644444422 34333 33433333 78889986532 233344445
Q ss_pred c-eEeeCcccccccccccchHHhh
Q psy7943 110 S-IIEYGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 110 ~-~~~~~g~~~~~~l~~~~~~~~~ 132 (142)
+ ..++....+.++| ...++..
T Consensus 90 ~vK~r~~~p~~~~~l--f~~ID~M 111 (118)
T PF13778_consen 90 GVKLRWPEPIDPEEL--FDTIDAM 111 (118)
T ss_pred cEEEecCCCCCHHHH--HHHHhCC
Confidence 5 5558888899998 7777554
No 267
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=82.52 E-value=1.5 Score=29.53 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=25.3
Q ss_pred cHHHHHHcCCCCCCEEEEEeCCceEeeCcccccc
Q psy7943 88 HTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVE 121 (142)
Q Consensus 88 ~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~ 121 (142)
++.+.++|+|+.+|++++...++.-...|..+..
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~ 184 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVG 184 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCCCCCEEEecccHH
Confidence 4788999999999999998775433345655543
No 268
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=79.59 E-value=2 Score=28.08 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=18.5
Q ss_pred HHHHHHcCCCCCCEEEEEeCCc
Q psy7943 89 TALAEQYGVRGYPTLKFFKKRS 110 (142)
Q Consensus 89 ~~~~~~~~i~~~P~~~i~~~~~ 110 (142)
.+...++|+.++|++++.+++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 3566788999999999998875
No 269
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=79.48 E-value=2.8 Score=27.41 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=24.9
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHHh
Q psy7943 45 ILVEFYAPWCGHCKQLVPEYSKAALQLA 72 (142)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~ 72 (142)
.+.+|+.+.||+|-...+.+.++.+.+.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhC
Confidence 3678889999999999999999999883
No 270
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=79.47 E-value=4.5 Score=24.40 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=41.3
Q ss_pred EEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc
Q psy7943 28 LVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86 (142)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 86 (142)
..++++.++-..-+|++++|.=.|+.|+.-. .-..++++.+.|... .+.+...-|.
T Consensus 7 ~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~--gl~ILaFPcn 62 (108)
T PF00255_consen 7 KDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK--GLEILAFPCN 62 (108)
T ss_dssp EBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG--TEEEEEEEBS
T ss_pred eCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC--CeEEEeeehH
Confidence 3444555555555799999999999999988 777899999999854 4666665554
No 271
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=79.27 E-value=10 Score=24.61 Aligned_cols=94 Identities=7% Similarity=0.065 Sum_probs=54.1
Q ss_pred hHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHH-HhcCCC-ceEEEEeecc-------------------------
Q psy7943 34 NFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQ-LATDGH-DIKLAKVDAT------------------------- 86 (142)
Q Consensus 34 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~-~~~~~~-~~~~~~vd~~------------------------- 86 (142)
.|...--.||+-+|..-|..-..-....|.+..+.+. ++.... ...++++|.-
T Consensus 29 ~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~v 108 (160)
T PF09695_consen 29 PWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFV 108 (160)
T ss_pred ccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEE
Confidence 3444445688888877766655666666666666655 433222 3445555421
Q ss_pred --ccHHHHHHcCCCC-CCEEEEEeCCceEe--eCcccccccccccchH
Q psy7943 87 --QHTALAEQYGVRG-YPTLKFFKKRSIIE--YGEVTSVEYCYQRNWH 129 (142)
Q Consensus 87 --~~~~~~~~~~i~~-~P~~~i~~~~~~~~--~~g~~~~~~l~~~~~~ 129 (142)
.+..+...+++.. --.+++++..|.+. ..|.++.+++ ...+
T Consensus 109 lD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev--~qVi 154 (160)
T PF09695_consen 109 LDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEV--QQVI 154 (160)
T ss_pred EcCCCceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHH--HHHH
Confidence 1112233333332 34677888888666 4788888888 6555
No 272
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=78.74 E-value=1.7 Score=28.69 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHHHhhccCCCCCCcEEEeChhhHHHhhh
Q psy7943 1 MRRLSLLFLLISPLVVFADDVTEEDGVLVLTQDNFQSSIE 40 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (142)
||+++.++++++++.+|+. .+....+...++..++...+
T Consensus 1 ~~~~~~~~~~~~~~~~c~~-~~~~~pv~~~~~~~~~~s~~ 39 (177)
T TIGR03516 1 MKHLIAVILLLLLLLGCKT-PEARRPISRSSGTTIKLSAE 39 (177)
T ss_pred CceeHHHHHHHHHHhhcCC-CCCCCCcCCCCcchHHHHHH
Confidence 8887776666555555543 23333344444444444333
No 273
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=78.52 E-value=0.76 Score=26.26 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=51.1
Q ss_pred EECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEeeCccccc
Q psy7943 49 FYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSV 120 (142)
Q Consensus 49 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~ 120 (142)
|-+..-+.++.....+..+.+... +..+..-.+|..+++++++.+++-.+||++-..++-.-++.|..+.
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l--~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik~~P~P~rrliGdls~ 72 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYL--GGRYELEVIDVLEQPELAEEDRIVATPTLIKESPEPRRRLIGDLSD 72 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHC--TTTEEEEEEETTTSHSHHTTTEEECHHHHHTTSSHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhC--CCcEEEEEEEcccCHhHHhHCCeeecceEeeccCCCceEEeccCch
Confidence 445556677788888888887654 3689999999999999999999999999865444333334454443
No 274
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=77.16 E-value=33 Score=26.92 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=45.7
Q ss_pred CCcEEEeChhhHHHhhhcCCcEEEEEE-CCCCh-hhhhhhHHHHHHHHHHhcCCCceEEEEeeccccH-----HH---HH
Q psy7943 24 EDGVLVLTQDNFQSSIEKHDHILVEFY-APWCG-HCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT-----AL---AE 93 (142)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~vv~f~-~~~C~-~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~---~~ 93 (142)
......+++..-+-+..=++++-|+++ +..-+ .=......+.++-++|+..+.++.+-.+|....+ ++ ..
T Consensus 29 ~~k~ytLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~e~~~~~~~~~ 108 (552)
T TIGR03521 29 EDKRYTLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDEQGEEILDSLA 108 (552)
T ss_pred CCCceecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHHHHHHH
Confidence 345667777766555544566555555 43322 2234455566666667666567888888876543 23 23
Q ss_pred HcCCCCCC
Q psy7943 94 QYGVRGYP 101 (142)
Q Consensus 94 ~~~i~~~P 101 (142)
++|++..+
T Consensus 109 ~~gi~~~~ 116 (552)
T TIGR03521 109 QYGIKPAN 116 (552)
T ss_pred HcCCCcce
Confidence 47886555
No 275
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=74.75 E-value=22 Score=24.07 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=34.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc----------------cHHHHHHcCCC--CCCEEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ----------------HTALAEQYGVR--GYPTLKF 105 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------~~~~~~~~~i~--~~P~~~i 105 (142)
|=.|.+..|..|--....|.++...- +.-..-..||.-. .+...++++.. .+|-+++
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~---~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV 76 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARP---DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV 76 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHT---SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCC---CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE
Confidence 45688999999999999999999872 2344555566531 23455555554 4788876
No 276
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.72 E-value=3.1 Score=25.22 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHHHHh
Q psy7943 1 MRRLSLLFLLISPLVV 16 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~ 16 (142)
||+++++++++++...
T Consensus 1 MKk~~ll~~~ll~s~~ 16 (114)
T PF11777_consen 1 MKKIILLASLLLLSSS 16 (114)
T ss_pred CchHHHHHHHHHHHHH
Confidence 9998888755544433
No 277
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=74.39 E-value=2.7 Score=27.43 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=20.3
Q ss_pred HHHHHcCCCCCCEEEEEeCCceEeeCcccccccc
Q psy7943 90 ALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYC 123 (142)
Q Consensus 90 ~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~l 123 (142)
+...++|+.++|++++ +|+ .+.|....+.+
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~--~~~G~~~l~~~ 187 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE--MFWGQDRLDML 187 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe--eecccccHHHH
Confidence 5667889999999988 332 34455555544
No 278
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=73.59 E-value=7 Score=18.55 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=7.9
Q ss_pred CchHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPL 14 (142)
Q Consensus 1 Mk~~~~~~~~~~~~ 14 (142)
||.+.+.+.+.+++
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 88877744444333
No 279
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=73.53 E-value=2.7 Score=24.83 Aligned_cols=19 Identities=32% Similarity=0.212 Sum_probs=13.4
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
||++++...+.+++..++.
T Consensus 1 mKk~ll~~~lallLtgCat 19 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCAT 19 (97)
T ss_pred CcHHHHHHHHHHHHcccce
Confidence 9998887776666655543
No 280
>PRK10449 heat-inducible protein; Provisional
Probab=73.39 E-value=2.4 Score=26.77 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=13.4
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
||+++.++++.+++++|+.
T Consensus 1 mk~~~~~~~~~~~l~~C~~ 19 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVS 19 (140)
T ss_pred ChhHHHHHHHHHHHHHhcC
Confidence 8999877766666666554
No 281
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=72.81 E-value=5.2 Score=24.47 Aligned_cols=21 Identities=14% Similarity=0.480 Sum_probs=17.9
Q ss_pred EEEEECCCChhhhhhhHHHHH
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~ 66 (142)
+-.|+.+.|..|++....+.+
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 566889999999999987766
No 282
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=72.43 E-value=12 Score=19.41 Aligned_cols=19 Identities=32% Similarity=0.301 Sum_probs=12.2
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
||.+.++..+++++.-..+
T Consensus 1 MRTL~LLaAlLLlAlqaQA 19 (52)
T PF00879_consen 1 MRTLALLAALLLLALQAQA 19 (52)
T ss_pred CcHHHHHHHHHHHHHHHhc
Confidence 8888887766655544433
No 283
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=72.27 E-value=4 Score=24.59 Aligned_cols=20 Identities=10% Similarity=0.358 Sum_probs=16.5
Q ss_pred EEEECCCChhhhhhhHHHHH
Q psy7943 47 VEFYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~ 66 (142)
..|+.+.|..|++....+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE 21 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46889999999999876665
No 284
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=72.24 E-value=1.4 Score=21.79 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=10.0
Q ss_pred CchHHHHHHHHHH--HHhhcc
Q psy7943 1 MRRLSLLFLLISP--LVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~--~~~~~~ 19 (142)
|||+++.+++++. ++++++
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa 21 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA 21 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh
Confidence 7876665444433 444444
No 285
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=71.72 E-value=31 Score=24.08 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=42.8
Q ss_pred cEEEeChhhHHHhhhcCCcE-EEEEECCCChh-hhhhhHHHHHHHHHHhcCCC-ceEEEEeeccccHHHH----HHcCCC
Q psy7943 26 GVLVLTQDNFQSSIEKHDHI-LVEFYAPWCGH-CKQLVPEYSKAALQLATDGH-DIKLAKVDATQHTALA----EQYGVR 98 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~-vv~f~~~~C~~-C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~----~~~~i~ 98 (142)
....+++...+.+.+=++++ +-.|++..=+. =....+.+.++-+.|...+. ++.+-.+|.+.++... +++|++
T Consensus 8 k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~ 87 (271)
T PF09822_consen 8 KRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQ 87 (271)
T ss_pred CCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCC
Confidence 34455555555544434454 44444442222 35555566666667765555 7888888986555444 448887
Q ss_pred C
Q psy7943 99 G 99 (142)
Q Consensus 99 ~ 99 (142)
.
T Consensus 88 ~ 88 (271)
T PF09822_consen 88 P 88 (271)
T ss_pred c
Confidence 6
No 286
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=71.71 E-value=4.2 Score=24.61 Aligned_cols=20 Identities=10% Similarity=0.345 Sum_probs=16.9
Q ss_pred EEEECCCChhhhhhhHHHHH
Q psy7943 47 VEFYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~ 66 (142)
..|+.+.|..|++....+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED 21 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46889999999999887766
No 287
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=71.09 E-value=4.9 Score=27.26 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=12.6
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
||+++++++++++.+|...
T Consensus 1 mk~i~~l~l~lll~~C~~~ 19 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCSTN 19 (216)
T ss_pred ChHHHHHHHHHHHHhhcCC
Confidence 8999888755555555433
No 288
>PRK11443 lipoprotein; Provisional
Probab=71.07 E-value=3.7 Score=25.45 Aligned_cols=18 Identities=11% Similarity=0.017 Sum_probs=11.9
Q ss_pred CchHHHHHHHHHHHHhhc
Q psy7943 1 MRRLSLLFLLISPLVVFA 18 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~ 18 (142)
||+++++++++++..|.+
T Consensus 1 Mk~~~~~~~~~lLsgCa~ 18 (124)
T PRK11443 1 MKKFIAPLLALLLSGCQI 18 (124)
T ss_pred ChHHHHHHHHHHHHhccC
Confidence 888777776666555543
No 289
>KOG1651|consensus
Probab=70.16 E-value=28 Score=22.83 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=43.8
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 86 (142)
.+..++.+.++--.-++++++|.=-|+.|+.-...=+.++.+.+.|+.. .+.+...-|.
T Consensus 18 ~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~--Gl~ILaFPCN 76 (171)
T KOG1651|consen 18 SAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ--GLEILAFPCN 76 (171)
T ss_pred EEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC--CeEEEEeccc
Confidence 3445555555555568999999999999999987778999999999854 5666666664
No 290
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=68.05 E-value=20 Score=23.26 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=40.1
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 86 (142)
.+..++.+.+....-++++++|.=.|+-|+.-. .-..++.+.+.|++. .+.+...-|+
T Consensus 9 ~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~--Gf~VLgFPcN 66 (162)
T COG0386 9 SVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDK--GFEVLGFPCN 66 (162)
T ss_pred eeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhC--CcEEEecccc
Confidence 455566666666667899999999999998776 334577777777754 4555555553
No 291
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=66.73 E-value=1.9 Score=26.81 Aligned_cols=19 Identities=32% Similarity=0.530 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
||++++++++++++.++++
T Consensus 1 MKK~ll~~~lllss~sfaA 19 (126)
T PF09403_consen 1 MKKILLLGMLLLSSISFAA 19 (126)
T ss_dssp -------------------
T ss_pred ChHHHHHHHHHHHHHHHHc
Confidence 9997766555555555544
No 292
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=66.16 E-value=14 Score=22.46 Aligned_cols=53 Identities=15% Similarity=0.291 Sum_probs=34.9
Q ss_pred CChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHH-HHHHcC--CCCCCEEEEEeCC
Q psy7943 53 WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA-LAEQYG--VRGYPTLKFFKKR 109 (142)
Q Consensus 53 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~--i~~~P~~~i~~~~ 109 (142)
.|++|..++..+......- ..+-+..||....++ +....| -++.|++++=++.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~----~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~ 78 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLR----ERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGA 78 (112)
T ss_pred ECCchHHHHhHHhhChhhh----hcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCC
Confidence 4999999988776655433 366677788776553 333333 3689998875543
No 293
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=65.52 E-value=22 Score=24.36 Aligned_cols=71 Identities=18% Similarity=0.129 Sum_probs=44.5
Q ss_pred EECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEeeCcccccccccccch
Q psy7943 49 FYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRNW 128 (142)
Q Consensus 49 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~l~~~~~ 128 (142)
|.-.+|..|-.+...+.+ ++.-..+.++ |+.......-+-++-++|.+++ +|.+.+-+..+++++ ...
T Consensus 16 ~~HktC~ssy~Lf~~L~n-----kgll~~Vkii--~a~~p~f~~~~~~V~SvP~Vf~---DGel~~~dpVdp~~i--es~ 83 (265)
T COG5494 16 FTHKTCVSSYMLFEYLEN-----KGLLGKVKII--DAELPPFLAFEKGVISVPSVFI---DGELVYADPVDPEEI--ESI 83 (265)
T ss_pred EEecchHHHHHHHHHHHh-----cCCCCCceEE--EcCCChHHHhhcceeecceEEE---cCeEEEcCCCCHHHH--HHH
Confidence 445679999877765543 1111345554 4444444444557789999866 467777788888888 666
Q ss_pred HHh
Q psy7943 129 HKR 131 (142)
Q Consensus 129 ~~~ 131 (142)
+..
T Consensus 84 ~~G 86 (265)
T COG5494 84 LSG 86 (265)
T ss_pred HcC
Confidence 654
No 294
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=65.32 E-value=9.6 Score=23.60 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=18.5
Q ss_pred EEEEEECCCChhhhhhhHHHHHH
Q psy7943 45 ILVEFYAPWCGHCKQLVPEYSKA 67 (142)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~~ 67 (142)
.+..|+-+.|..|++....+.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC
Confidence 35568889999999998877663
No 295
>PRK10853 putative reductase; Provisional
Probab=64.64 E-value=8 Score=23.63 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=17.5
Q ss_pred EEEEECCCChhhhhhhHHHHH
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~ 66 (142)
+..|+-+.|..|++....+.+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA 22 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH
Confidence 456888999999999887776
No 296
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=63.87 E-value=7.2 Score=21.85 Aligned_cols=16 Identities=19% Similarity=0.301 Sum_probs=10.1
Q ss_pred CchHHHHHHHHHHHHh
Q psy7943 1 MRRLSLLFLLISPLVV 16 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~ 16 (142)
|||+++.++.++.+..
T Consensus 1 MKK~~~~~~~i~~l~~ 16 (80)
T PF11106_consen 1 MKKIIYGLFAILALAS 16 (80)
T ss_pred ChhHHHHHHHHHHHHh
Confidence 9999886554444433
No 297
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=63.03 E-value=22 Score=24.30 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=14.0
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
||++++.++.++++.+|+.
T Consensus 1 mk~l~~~l~~~l~LsgCa~ 19 (215)
T PF05643_consen 1 MKKLILGLAAALLLSGCAT 19 (215)
T ss_pred ChhHHHHHHHHHHHhhccC
Confidence 9999988777666666553
No 298
>PRK09810 entericidin A; Provisional
Probab=62.79 E-value=8.8 Score=18.80 Aligned_cols=12 Identities=58% Similarity=0.811 Sum_probs=7.4
Q ss_pred CchHHHHHHHHH
Q psy7943 1 MRRLSLLFLLIS 12 (142)
Q Consensus 1 Mk~~~~~~~~~~ 12 (142)
||+++.++++.+
T Consensus 2 Mkk~~~l~~~~~ 13 (41)
T PRK09810 2 MKRLIVLVLLAS 13 (41)
T ss_pred hHHHHHHHHHHH
Confidence 778776654433
No 299
>PRK10598 lipoprotein; Provisional
Probab=62.62 E-value=18 Score=24.19 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=21.3
Q ss_pred CchHHHHHHHHH--HHHhhccCCCCCCcEEEeChhhHHHhhhcC
Q psy7943 1 MRRLSLLFLLIS--PLVVFADDVTEEDGVLVLTQDNFQSSIEKH 42 (142)
Q Consensus 1 Mk~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (142)
||++++..++++ ++..|.+ .....++++++++.++++
T Consensus 1 mk~~~~~~~~~~~~llsGC~s-----l~~ysISE~Ein~yL~k~ 39 (186)
T PRK10598 1 MKKFLFAAALLVSGLLVGCNQ-----LTQYTISEQEINQYLAKH 39 (186)
T ss_pred CchHHHHHHHHHHHHHhcccc-----cCceeecHHHHHHHHHHh
Confidence 888865333333 2323322 125778889998877543
No 300
>KOG1422|consensus
Probab=62.12 E-value=29 Score=23.70 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=40.8
Q ss_pred CChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEeeCcccccccccccchHHhh
Q psy7943 53 WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 53 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~l~~~~~~~~~ 132 (142)
.|+.|+++.-.+. .+ +..+..-.+|....++-.+.....+-|=++.+++. +..+.+.+ ..++++.
T Consensus 20 dcpf~qr~~m~L~-----~k--~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~------~~tDs~~I--e~~Lee~ 84 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LK--GVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEK------WVTDSDKI--EEFLEEK 84 (221)
T ss_pred CChhHHHHHHHHH-----Hc--CCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCc------eeccHHHH--HHHHHHh
Confidence 5777777665544 22 23677777888777766655555555555555543 44455566 6666666
Q ss_pred ccce
Q psy7943 133 VTSV 136 (142)
Q Consensus 133 ~~~~ 136 (142)
+.+.
T Consensus 85 l~~p 88 (221)
T KOG1422|consen 85 LPPP 88 (221)
T ss_pred cCCC
Confidence 5443
No 301
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=61.91 E-value=9.6 Score=20.89 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=11.3
Q ss_pred CchHHHHHHHHHHHHh
Q psy7943 1 MRRLSLLFLLISPLVV 16 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~ 16 (142)
||++.+++++.++.+.
T Consensus 1 MKhFaiLilavVaSAv 16 (78)
T PF11714_consen 1 MKHFAILILAVVASAV 16 (78)
T ss_pred CchHHHHHHHHHHHHH
Confidence 8998887766665444
No 302
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=61.33 E-value=16 Score=21.70 Aligned_cols=18 Identities=17% Similarity=0.542 Sum_probs=13.7
Q ss_pred EECCCChhhhhhhHHHHH
Q psy7943 49 FYAPWCGHCKQLVPEYSK 66 (142)
Q Consensus 49 f~~~~C~~C~~~~~~~~~ 66 (142)
|+.+.|..|++....+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~ 18 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE 18 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHH
Confidence 678899999999987776
No 303
>PRK10026 arsenate reductase; Provisional
Probab=61.01 E-value=13 Score=23.62 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=18.3
Q ss_pred EEEEECCCChhhhhhhHHHHHH
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKA 67 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~ 67 (142)
+..|+-+.|..|++....+.+.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5578899999999999877763
No 304
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=60.84 E-value=7.1 Score=25.08 Aligned_cols=18 Identities=44% Similarity=0.438 Sum_probs=13.8
Q ss_pred CchHHHHHHHHHHHHhhc
Q psy7943 1 MRRLSLLFLLISPLVVFA 18 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~ 18 (142)
|+|+++++++.+++..|+
T Consensus 1 Mrk~l~~~~l~l~LaGCA 18 (151)
T PRK13883 1 MRKIVLLALLALALGGCA 18 (151)
T ss_pred ChhHHHHHHHHHHHhccc
Confidence 899999888777666554
No 305
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=60.69 E-value=43 Score=21.65 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=33.2
Q ss_pred hcCCcEEEEEE-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc
Q psy7943 40 EKHDHILVEFY-APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86 (142)
Q Consensus 40 ~~~~~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 86 (142)
..+|..++... +-.-+-|....+.+++.+..+.+ ..+..+.+|.+
T Consensus 42 ~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~DLP 87 (158)
T COG2077 42 FAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMDLP 87 (158)
T ss_pred cCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCCCh
Confidence 35666555554 66889999999999999888873 45677777765
No 306
>KOG0912|consensus
Probab=59.57 E-value=35 Score=24.90 Aligned_cols=106 Identities=11% Similarity=0.113 Sum_probs=59.9
Q ss_pred EEeChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCC--CCCCEEEE
Q psy7943 28 LVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGV--RGYPTLKF 105 (142)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i--~~~P~~~i 105 (142)
..++=+|.+.+...|.+.+|+|+.+.-....+.- -+.+++++.+....+.++..|+..-..-...+|- .-.|.+.|
T Consensus 213 REiTFeN~EELtEEGlPflILf~~kdD~~s~k~F--~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DLPviaI 290 (375)
T KOG0912|consen 213 REITFENAEELTEEGLPFLILFRKKDDKESEKIF--KNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDLPVIAI 290 (375)
T ss_pred hhhhhccHHHHhhcCCceEEEEecCCcccHHHHH--HHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccCcEEEe
Confidence 3445566677777899999999988655444333 3455666765555688888888754444444432 34565543
Q ss_pred EeCCceEe---eCcccccccccccchHHhhcccee
Q psy7943 106 FKKRSIIE---YGEVTSVEYCYQRNWHKRAVTSVI 137 (142)
Q Consensus 106 ~~~~~~~~---~~g~~~~~~l~~~~~~~~~~~~~~ 137 (142)
=.=...+. +.....+..| .+|+.+.-....
T Consensus 291 DsF~Hmylfp~f~di~~pGkL--kqFv~DL~sgkl 323 (375)
T KOG0912|consen 291 DSFRHMYLFPDFNDINIPGKL--KQFVADLHSGKL 323 (375)
T ss_pred eccceeeecCchhhhcCccHH--HHHHHHHhCchh
Confidence 11111111 2233344466 666665544333
No 307
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=58.98 E-value=20 Score=24.94 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=39.5
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc----------------ccHHHHHHcCCCCCCEEEE
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT----------------QHTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~----------------~~~~~~~~~~i~~~P~~~i 105 (142)
..-+|=.|.+..|..|--....+.+++..-. .--.-..||.. ....+.+.|+..+++|=-.
T Consensus 41 ~~~VVELfTSQGCsSCPPAd~~l~k~a~~~~---vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQa 117 (261)
T COG5429 41 PLGVVELFTSQGCSSCPPADANLAKLADDPG---VLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQA 117 (261)
T ss_pred CceEEEEeecCCcCCCChHHHHHHHhccCCC---EEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchh
Confidence 3446667778899999999988887765321 12233344542 2345677777777665444
Q ss_pred EeCC
Q psy7943 106 FKKR 109 (142)
Q Consensus 106 ~~~~ 109 (142)
+-+|
T Consensus 118 vvnG 121 (261)
T COG5429 118 VVNG 121 (261)
T ss_pred eeec
Confidence 4444
No 308
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=58.79 E-value=5.9 Score=15.63 Aligned_cols=6 Identities=17% Similarity=0.423 Sum_probs=2.6
Q ss_pred CchHHH
Q psy7943 1 MRRLSL 6 (142)
Q Consensus 1 Mk~~~~ 6 (142)
||..++
T Consensus 2 Mk~vII 7 (19)
T PF13956_consen 2 MKLVII 7 (19)
T ss_pred ceehHH
Confidence 444444
No 309
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=58.35 E-value=13 Score=18.54 Aligned_cols=16 Identities=25% Similarity=0.274 Sum_probs=11.1
Q ss_pred CchHHHHHHHHHHHHh
Q psy7943 1 MRRLSLLFLLISPLVV 16 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~ 16 (142)
|||+++-.++.+.+..
T Consensus 1 mkkll~~slltlam~~ 16 (48)
T PF05968_consen 1 MKKLLIGSLLTLAMAW 16 (48)
T ss_pred CchHHHhHHHHHHHHh
Confidence 8898887666665554
No 310
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=57.84 E-value=45 Score=21.02 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=17.6
Q ss_pred CCCEEEEEeCCc----eEeeCcccccccccccchH
Q psy7943 99 GYPTLKFFKKRS----IIEYGEVTSVEYCYQRNWH 129 (142)
Q Consensus 99 ~~P~~~i~~~~~----~~~~~g~~~~~~l~~~~~~ 129 (142)
.+--++++..+. .+...|..+++++ .+.+
T Consensus 121 ~i~elvi~~~~~~e~~~v~i~G~i~~~~I--~~l~ 153 (155)
T PF14060_consen 121 KIKELVILVSDKDEFVVVRIKGDIDPEDI--SKLI 153 (155)
T ss_pred ccceEEEEEeCCCcEEEEEEeCCCCHHHH--HHHH
Confidence 455566655443 4457788888877 5443
No 311
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=57.45 E-value=22 Score=26.09 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=47.5
Q ss_pred CChhhhhhhHHHHHHH----HHHhcCCCceEEEEeeccc---cHHHHHHcCCC--CCCEEEEEeCCceEe-eCccccccc
Q psy7943 53 WCGHCKQLVPEYSKAA----LQLATDGHDIKLAKVDATQ---HTALAEQYGVR--GYPTLKFFKKRSIIE-YGEVTSVEY 122 (142)
Q Consensus 53 ~C~~C~~~~~~~~~~~----~~~~~~~~~~~~~~vd~~~---~~~~~~~~~i~--~~P~~~i~~~~~~~~-~~g~~~~~~ 122 (142)
.||.|-+..-.+.+.. +.+......+....+.|-- .+.....+|+. +-|.-.+|.+|+.+. ..+..-.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 4888877666544444 4444344444444444421 12233445554 368999999998666 667766777
Q ss_pred ccccchHHhhcc
Q psy7943 123 CYQRNWHKRAVT 134 (142)
Q Consensus 123 l~~~~~~~~~~~ 134 (142)
+ ...+.+...
T Consensus 343 l--~~~i~~~~~ 352 (361)
T COG0821 343 L--EALIEAYAE 352 (361)
T ss_pred H--HHHHHHHHH
Confidence 7 776666544
No 312
>PRK09936 hypothetical protein; Provisional
Probab=56.76 E-value=60 Score=23.41 Aligned_cols=50 Identities=16% Similarity=0.279 Sum_probs=26.7
Q ss_pred CchHHHHHHHHHHHHhhc-cC---CCCCCc-EEEeChhhHHHhhh----cC-CcEEEEEE
Q psy7943 1 MRRLSLLFLLISPLVVFA-DD---VTEEDG-VLVLTQDNFQSSIE----KH-DHILVEFY 50 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~-~~---~~~~~~-~~~~~~~~~~~~~~----~~-~~~vv~f~ 50 (142)
|+++++++++++++...+ +. +-++.+ =..+++.+|+...+ .+ +.++|.+.
T Consensus 1 m~~~~~~~l~~l~~~~~~~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt 60 (296)
T PRK09936 1 MRKFIFVLLTLLLVSPFSQAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWT 60 (296)
T ss_pred ChhHHHHHHHHHHcCchhhccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEee
Confidence 888888777776665322 11 111111 12466777887543 34 44555553
No 313
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=54.87 E-value=15 Score=18.69 Aligned_cols=12 Identities=0% Similarity=0.097 Sum_probs=6.7
Q ss_pred CchHHHHHHHHH
Q psy7943 1 MRRLSLLFLLIS 12 (142)
Q Consensus 1 Mk~~~~~~~~~~ 12 (142)
|||.+.+++.++
T Consensus 2 mKk~i~~i~~~l 13 (48)
T PRK10081 2 VKKTIAAIFSVL 13 (48)
T ss_pred hHHHHHHHHHHH
Confidence 677666544333
No 314
>KOG1364|consensus
Probab=54.51 E-value=16 Score=26.76 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=42.3
Q ss_pred ceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCc--eE-eeCcccccccccccchHHhhccc
Q psy7943 77 DIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS--II-EYGEVTSVEYCYQRNWHKRAVTS 135 (142)
Q Consensus 77 ~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~--~~-~~~g~~~~~~l~~~~~~~~~~~~ 135 (142)
....+..|..+.+++..-|.+..+|.+.++++-. .+ +..|...++++ .+-+.+++..
T Consensus 132 ~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~f--l~~l~~Fi~~ 191 (356)
T KOG1364|consen 132 RWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQF--LSDLNEFIDS 191 (356)
T ss_pred eEEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHH--HHHHHHHHhc
Confidence 4555666777888999999999999999998743 33 36788888777 6666666543
No 315
>KOG4277|consensus
Probab=54.45 E-value=72 Score=23.29 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=46.9
Q ss_pred hcCCcEEEEEECC-----CChhhhhhhHHHHHHHHHHhcC---CCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCc
Q psy7943 40 EKHDHILVEFYAP-----WCGHCKQLVPEYSKAALQLATD---GHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS 110 (142)
Q Consensus 40 ~~~~~~vv~f~~~-----~C~~C~~~~~~~~~~~~~~~~~---~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~ 110 (142)
.++|.+++..... +-.+-+.+....++.++.+++. -.++.|..+|...-..-...-. -+.|++++|+-..
T Consensus 248 ~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqilM~a-ls~P~l~i~Ntsn 325 (468)
T KOG4277|consen 248 ASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQILMAA-LSEPHLFIFNTSN 325 (468)
T ss_pred cCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHHHHh-hcCCeEEEEecCc
Confidence 4688877766543 3456678888888888887654 2368999999765433222222 3689999998654
No 316
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=54.42 E-value=34 Score=18.54 Aligned_cols=51 Identities=10% Similarity=-0.024 Sum_probs=30.4
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc----ccHHHHHHcCCCCCCEEE
Q psy7943 47 VEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT----QHTALAEQYGVRGYPTLK 104 (142)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~i~~~P~~~ 104 (142)
..|+.+.|+.|++..-.+.+. +..+....+|.. ....+.+.-....+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~-------gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK-------GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc-------CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 457788899998776444332 134555566653 223455544556789985
No 317
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=53.61 E-value=28 Score=18.20 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=8.1
Q ss_pred CchHHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPLV 15 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~ 15 (142)
||.++-+++++.+..
T Consensus 1 mknllkillilafa~ 15 (65)
T PF10880_consen 1 MKNLLKILLILAFAS 15 (65)
T ss_pred ChhHHHHHHHHHHhh
Confidence 677665555444433
No 318
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=53.41 E-value=31 Score=25.55 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=40.5
Q ss_pred ChhhhhhhHHH----HHHHHHHhcCCCceEEEEeeccc---cHHHHHHcCCCCC-CEEEEEeCCceEe-eCcccccccc
Q psy7943 54 CGHCKQLVPEY----SKAALQLATDGHDIKLAKVDATQ---HTALAEQYGVRGY-PTLKFFKKRSIIE-YGEVTSVEYC 123 (142)
Q Consensus 54 C~~C~~~~~~~----~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~i~~~-P~~~i~~~~~~~~-~~g~~~~~~l 123 (142)
||.|.+-.-.+ .++.+.+.+....+....+.|.- .+.-...+|+.+- +...+|.+|+.++ ..+..-.+.+
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l 349 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEEL 349 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHH
Confidence 55555544443 34445555555568888888742 2344556777654 5677888888776 4433333444
No 319
>COG5510 Predicted small secreted protein [Function unknown]
Probab=52.79 E-value=19 Score=17.86 Aligned_cols=8 Identities=38% Similarity=0.650 Sum_probs=4.4
Q ss_pred CchHHHHH
Q psy7943 1 MRRLSLLF 8 (142)
Q Consensus 1 Mk~~~~~~ 8 (142)
||+.++++
T Consensus 2 mk~t~l~i 9 (44)
T COG5510 2 MKKTILLI 9 (44)
T ss_pred chHHHHHH
Confidence 77744443
No 320
>PRK04011 peptide chain release factor 1; Provisional
Probab=52.54 E-value=95 Score=23.53 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcC
Q psy7943 62 PEYSKAALQLATDGHDIKLAKVDATQHTALAEQYG 96 (142)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~ 96 (142)
+.+.++.+.....+..+.++.-+.++..++.+.||
T Consensus 367 ~~v~~l~e~a~~~g~~v~iis~~~e~G~qL~~~fG 401 (411)
T PRK04011 367 DIIEELSELAEQSGTKVEVISTDTEEGEQLLKAFG 401 (411)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCChhHHHHHHcCC
Confidence 45666776666666788888877777777777664
No 321
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=52.53 E-value=9 Score=19.21 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=7.5
Q ss_pred CchHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISP 13 (142)
Q Consensus 1 Mk~~~~~~~~~~~ 13 (142)
|||+.+++++++.
T Consensus 1 ~kk~rwiili~iv 13 (47)
T PRK10299 1 MKKFRWVVLVVVV 13 (47)
T ss_pred CceeeehHHHHHH
Confidence 7776665544433
No 322
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=51.19 E-value=13 Score=22.74 Aligned_cols=19 Identities=42% Similarity=0.476 Sum_probs=13.0
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
||++.++.+.+++++.|.+
T Consensus 1 Mrk~~~~~l~~~lLvGCsS 19 (123)
T COG5633 1 MRKLCLLSLALLLLVGCSS 19 (123)
T ss_pred CceehHHHHHHHHhhccCC
Confidence 8998886666666555543
No 323
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=51.16 E-value=36 Score=17.89 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=30.3
Q ss_pred EEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc----cHHHHHHcCCCCCCEEEE
Q psy7943 48 EFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ----HTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~i~~~P~~~i 105 (142)
.|+.+.|+.|++..-.+.... ..+....+|... ...+.+......+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLG-------IPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcC-------CCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 477889999998776555431 344455555422 234444444557899864
No 324
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=50.77 E-value=18 Score=23.06 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=10.8
Q ss_pred CchHHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPLV 15 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~ 15 (142)
||+++++++++++++
T Consensus 1 M~~~~~~~~~~~~~~ 15 (162)
T PF12276_consen 1 MKRRLLLALALALLA 15 (162)
T ss_pred CchHHHHHHHHHHHH
Confidence 888888777666543
No 325
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=50.65 E-value=83 Score=21.89 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=45.4
Q ss_pred cCCcEEEEEECCCChhhh-----------------hhhHHHHHHHHHHhcCCCceEEEEeeccc-----c-HHHHHHcCC
Q psy7943 41 KHDHILVEFYAPWCGHCK-----------------QLVPEYSKAALQLATDGHDIKLAKVDATQ-----H-TALAEQYGV 97 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~-----------------~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-----~-~~~~~~~~i 97 (142)
++++..+.+++|.|++-. .....+.+....|-.....+....+|+.. + .++++.++.
T Consensus 111 s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~ 190 (240)
T smart00053 111 SPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP 190 (240)
T ss_pred cCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH
Confidence 356788889999886533 23345666666665433456666676542 2 478888888
Q ss_pred CCCCEEEEEeC
Q psy7943 98 RGYPTLKFFKK 108 (142)
Q Consensus 98 ~~~P~~~i~~~ 108 (142)
.+.|++.++.+
T Consensus 191 ~~~rti~ViTK 201 (240)
T smart00053 191 QGERTIGVITK 201 (240)
T ss_pred cCCcEEEEEEC
Confidence 89999988865
No 326
>PF12099 DUF3575: Protein of unknown function (DUF3575); InterPro: IPR021958 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=50.23 E-value=21 Score=23.76 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=12.6
Q ss_pred CchHHHHHHHHHHHHhhc
Q psy7943 1 MRRLSLLFLLISPLVVFA 18 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~ 18 (142)
||++.++++++++++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (189)
T PF12099_consen 1 MKKIRILFLLLLLFCSLS 18 (189)
T ss_pred CceehHHHHHHHHHHHhc
Confidence 899888777666655544
No 327
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=50.14 E-value=47 Score=25.79 Aligned_cols=18 Identities=22% Similarity=0.251 Sum_probs=11.2
Q ss_pred CchHHHHHHHHHHHHhhc
Q psy7943 1 MRRLSLLFLLISPLVVFA 18 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~ 18 (142)
|+|++++++++++..+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (499)
T PRK15346 1 MKKLLILIFLFLLNTAKF 18 (499)
T ss_pred CchhHHHHHHHHHhhhhh
Confidence 777777666666555443
No 328
>PRK11372 lysozyme inhibitor; Provisional
Probab=49.13 E-value=14 Score=22.34 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=10.2
Q ss_pred CchHHHHHHHHHHHHh
Q psy7943 1 MRRLSLLFLLISPLVV 16 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~ 16 (142)
||+++++++++++..|
T Consensus 3 mk~ll~~~~~~lL~gC 18 (109)
T PRK11372 3 MKKLLIICLPVLLTGC 18 (109)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 8887766665555444
No 329
>PRK10053 hypothetical protein; Provisional
Probab=49.12 E-value=15 Score=22.93 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=8.3
Q ss_pred CchHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISP 13 (142)
Q Consensus 1 Mk~~~~~~~~~~~ 13 (142)
|||.+++++++++
T Consensus 1 MKK~~~~~~~~~~ 13 (130)
T PRK10053 1 MKLQAIALASFLV 13 (130)
T ss_pred CcHHHHHHHHHHH
Confidence 9997766544433
No 330
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=48.01 E-value=66 Score=19.94 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=23.6
Q ss_pred HHHHHcCCCCCCEEEEEeCCceEeeCcccccccccccchHHhhc
Q psy7943 90 ALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRAV 133 (142)
Q Consensus 90 ~~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 133 (142)
++.++-|...+|.+++ +|..+......+.++| .+|+.-..
T Consensus 63 ~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl--~~~~~i~~ 102 (123)
T PF06953_consen 63 QLLQTEGAEALPITLV--DGEIVKTGRYPTNEEL--AEWLGISF 102 (123)
T ss_dssp HHHHHH-GGG-SEEEE--TTEEEEESS---HHHH--HHHHT--G
T ss_pred HHHHHcCcccCCEEEE--CCEEEEecCCCCHHHH--HHHhCCCc
Confidence 5666778999998866 4555556666778888 88875443
No 331
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=45.86 E-value=19 Score=22.42 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=8.1
Q ss_pred CchHHHHHHHHH
Q psy7943 1 MRRLSLLFLLIS 12 (142)
Q Consensus 1 Mk~~~~~~~~~~ 12 (142)
||+++++.++.+
T Consensus 1 MKK~~~~~~~~l 12 (126)
T TIGR00156 1 MKFQAIVLASAL 12 (126)
T ss_pred CchHHHHHHHHH
Confidence 999776655543
No 332
>PF15621 PROL5-SMR: Proline-rich submaxillary gland androgen-regulated family
Probab=45.82 E-value=15 Score=22.30 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.0
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
||.+-+++.|.+++.++..
T Consensus 1 MK~L~li~GLw~Li~CF~~ 19 (113)
T PF15621_consen 1 MKSLYLIFGLWALIGCFTP 19 (113)
T ss_pred CcceehHHHHHHHHHHccc
Confidence 9988888888877777653
No 333
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=44.95 E-value=19 Score=24.77 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=12.1
Q ss_pred CchHHHHHHHHHHHHhhc
Q psy7943 1 MRRLSLLFLLISPLVVFA 18 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~ 18 (142)
||++++++++++++++|+
T Consensus 1 mk~~~~~~~~~l~l~gCa 18 (221)
T PRK12407 1 MKRFLILTALLLALCGCE 18 (221)
T ss_pred ChhHHHHHHHHHHHhhcc
Confidence 888887776665555554
No 334
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=44.44 E-value=26 Score=14.36 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=9.3
Q ss_pred CchHHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPLV 15 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~ 15 (142)
||++.+....+..+.
T Consensus 1 MKklaiMaa~s~~~~ 15 (21)
T PF12393_consen 1 MKKLAIMAAASMMTA 15 (21)
T ss_pred CchHHHHHHHHHHHH
Confidence 788777655554443
No 335
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=44.30 E-value=21 Score=22.81 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=13.8
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
|++++.++++.+++..|+.
T Consensus 1 mrk~~~~~~~al~LaGCaT 19 (145)
T PRK13835 1 LRRLLAACILALLLSGCQT 19 (145)
T ss_pred ChhHHHHHHHHHHHhcccc
Confidence 8898888777766665544
No 336
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=43.96 E-value=28 Score=18.56 Aligned_cols=15 Identities=33% Similarity=0.487 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHhh
Q psy7943 3 RLSLLFLLISPLVVF 17 (142)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (142)
|++++.++|+.+++.
T Consensus 4 Kl~vialLC~aLva~ 18 (65)
T PF10731_consen 4 KLIVIALLCVALVAI 18 (65)
T ss_pred hhhHHHHHHHHHHHH
Confidence 455555555555544
No 337
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=43.68 E-value=54 Score=21.19 Aligned_cols=25 Identities=4% Similarity=-0.152 Sum_probs=21.6
Q ss_pred EEECCCChhhhhhhHHHHHHHHHHh
Q psy7943 48 EFYAPWCGHCKQLVPEYSKAALQLA 72 (142)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~~~~~~~ 72 (142)
+|+..-||+|-...+.+.++...+.
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 4667799999999999999888774
No 338
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=43.61 E-value=48 Score=22.40 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=17.8
Q ss_pred CCcEEEEEECCCChhhhhhhHHHH
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYS 65 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~ 65 (142)
+.-.+.+|....|+.|......+.
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~ 131 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLL 131 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHh
Confidence 344566677799999999887663
No 339
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=43.57 E-value=22 Score=23.75 Aligned_cols=16 Identities=38% Similarity=0.443 Sum_probs=9.9
Q ss_pred CchHHHHHHHHHHHHh
Q psy7943 1 MRRLSLLFLLISPLVV 16 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~ 16 (142)
||.++.++++++++..
T Consensus 1 MKll~~lilli~~~~~ 16 (212)
T PF11912_consen 1 MKLLISLILLILLIIN 16 (212)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 8987666655555443
No 340
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=43.50 E-value=35 Score=22.13 Aligned_cols=12 Identities=8% Similarity=0.387 Sum_probs=7.7
Q ss_pred CchHHHHHHHHH
Q psy7943 1 MRRLSLLFLLIS 12 (142)
Q Consensus 1 Mk~~~~~~~~~~ 12 (142)
|||.++.++++.
T Consensus 1 Mkk~~~~~~~~~ 12 (174)
T PRK15209 1 MKKVVFALSALA 12 (174)
T ss_pred CchHHHHHHHHH
Confidence 899776554443
No 341
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=43.24 E-value=26 Score=19.65 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=9.5
Q ss_pred CchHHHHHHHHHHHHh
Q psy7943 1 MRRLSLLFLLISPLVV 16 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~ 16 (142)
||++.+++++++++++
T Consensus 1 ~~~l~~~l~~~v~~~~ 16 (85)
T TIGR02209 1 EKKLYVLLLLAILVSA 16 (85)
T ss_pred CchHHHHHHHHHHHHH
Confidence 6777666555555444
No 342
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=43.19 E-value=23 Score=23.47 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=11.3
Q ss_pred CchHHHHHHHHHHHHhh
Q psy7943 1 MRRLSLLFLLISPLVVF 17 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~ 17 (142)
|||+.+..++++++++.
T Consensus 1 m~k~~~a~~~~l~~~s~ 17 (180)
T PF07437_consen 1 MKKFLLASAAALLLVSA 17 (180)
T ss_pred CchHHHHHHHHHHHHhh
Confidence 99998876655554443
No 343
>PRK13792 lysozyme inhibitor; Provisional
Probab=42.37 E-value=23 Score=22.04 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=8.3
Q ss_pred CchHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISP 13 (142)
Q Consensus 1 Mk~~~~~~~~~~~ 13 (142)
||+.++++++.+.
T Consensus 1 mk~~l~~ll~~~~ 13 (127)
T PRK13792 1 MKKALWLLLAAVP 13 (127)
T ss_pred ChhHHHHHHHHHH
Confidence 8887665555544
No 344
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=42.09 E-value=58 Score=21.72 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=12.9
Q ss_pred cCCcEEEEEECCCCh-hhhhhh
Q psy7943 41 KHDHILVEFYAPWCG-HCKQLV 61 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~-~C~~~~ 61 (142)
+...+.+..+..+|| .|..+.
T Consensus 36 ~~G~i~ieL~~~~aP~t~~NF~ 57 (190)
T PRK10903 36 SAGNIELELNSQKAPVSVKNFV 57 (190)
T ss_pred ccccEEEEEeCCCCcHHHHHHH
Confidence 345677778888876 343333
No 345
>PRK11622 hypothetical protein; Provisional
Probab=41.52 E-value=1.5e+02 Score=22.15 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHHhhccCCCCCCcEEEeChhhHHHhhh--cCCcEEEEEEC
Q psy7943 1 MRRLSLLFLLISPLVVFADDVTEEDGVLVLTQDNFQSSIE--KHDHILVEFYA 51 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~f~~ 51 (142)
|+|++.+++.++.+.+++....+... .+|++++. +++.+.++-|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~tv~~~~wg 47 (401)
T PRK11622 1 MMRILGLLLGLLSLLSLAACASDAEN------KDWQQILEEAKGQTVYFYAWG 47 (401)
T ss_pred CchHHHHHHHHHHHHHHhccCCCCCC------CCHHHHHHHhcCCEEEEEEeC
Confidence 67777776666555544332222222 56888764 34444445553
No 346
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=41.12 E-value=22 Score=19.40 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=10.1
Q ss_pred CchHHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPLV 15 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~ 15 (142)
||++.-+++++++..
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (92)
T TIGR02052 1 MKKLATLLALFVLTS 15 (92)
T ss_pred ChhHHHHHHHHHHhc
Confidence 888877766665543
No 347
>PRK11627 hypothetical protein; Provisional
Probab=40.88 E-value=26 Score=23.51 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=10.3
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
|||+++.++.++++++|++
T Consensus 2 lkklll~l~a~~~L~gCA~ 20 (192)
T PRK11627 2 LKKILFPLVALFMLAGCAT 20 (192)
T ss_pred hHHHHHHHHHHHHHHhhcC
Confidence 5677765554444554443
No 348
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=40.46 E-value=30 Score=18.80 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=8.8
Q ss_pred CchHHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPLV 15 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~ 15 (142)
|+.+.+..++.+.+.
T Consensus 1 mnn~Si~VLlaLvLI 15 (71)
T PF04202_consen 1 MNNLSIAVLLALVLI 15 (71)
T ss_pred CCchhHHHHHHHHHH
Confidence 777777555444433
No 349
>PF10956 DUF2756: Protein of unknown function (DUF2756); InterPro: IPR020158 This entry contains proteins with no known function.
Probab=40.04 E-value=24 Score=20.90 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=7.6
Q ss_pred CchHHHHHHHHH
Q psy7943 1 MRRLSLLFLLIS 12 (142)
Q Consensus 1 Mk~~~~~~~~~~ 12 (142)
||+++++++++-
T Consensus 1 MK~ll~laalLP 12 (104)
T PF10956_consen 1 MKRLLILAALLP 12 (104)
T ss_pred ChHHHHHHHHcc
Confidence 888777554443
No 350
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=39.94 E-value=23 Score=17.84 Aligned_cols=12 Identities=17% Similarity=0.589 Sum_probs=6.6
Q ss_pred CchHHHHHHHHH
Q psy7943 1 MRRLSLLFLLIS 12 (142)
Q Consensus 1 Mk~~~~~~~~~~ 12 (142)
|||.+++++++-
T Consensus 3 lKKsllLlfflG 14 (46)
T PF03032_consen 3 LKKSLLLLFFLG 14 (46)
T ss_pred chHHHHHHHHHH
Confidence 677665544443
No 351
>PRK10350 hypothetical protein; Provisional
Probab=39.24 E-value=31 Score=21.47 Aligned_cols=17 Identities=59% Similarity=0.768 Sum_probs=9.5
Q ss_pred CchHHHHHHHHHHHHhhc
Q psy7943 1 MRRLSLLFLLISPLVVFA 18 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~ 18 (142)
||+++++..+ +.+++++
T Consensus 1 MKr~L~~~al-lP~~~~A 17 (145)
T PRK10350 1 MKRLLLLTAL-LPFVGFA 17 (145)
T ss_pred ChhHHHHHHH-hHHHHHH
Confidence 8998854443 3344433
No 352
>PRK10780 periplasmic chaperone; Provisional
Probab=39.09 E-value=27 Score=22.56 Aligned_cols=14 Identities=29% Similarity=0.114 Sum_probs=9.7
Q ss_pred CchHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPL 14 (142)
Q Consensus 1 Mk~~~~~~~~~~~~ 14 (142)
||+++.+.++++++
T Consensus 1 Mkk~~~~~~l~l~~ 14 (165)
T PRK10780 1 MKKWLLAAGLGLAL 14 (165)
T ss_pred ChHHHHHHHHHHHH
Confidence 89998866555443
No 353
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=38.85 E-value=63 Score=17.11 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=30.4
Q ss_pred EEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc-cHHHHHHcCCCCCCEEEE
Q psy7943 48 EFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-HTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i~~~P~~~i 105 (142)
.|+.+.|++|.+..-.+... +.+..+..+.+|... ...+.+......+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~-----~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHET-----GLGDDVELVLVNPWSDDESLLAVNPLGKIPALVL 56 (73)
T ss_pred EecCCCCcHHHHHHHHHHHh-----CCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE
Confidence 46778899999766544331 112345566666432 334444445567897753
No 354
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=37.85 E-value=13 Score=23.54 Aligned_cols=14 Identities=36% Similarity=0.911 Sum_probs=11.6
Q ss_pred CChhhhhhhHHHHH
Q psy7943 53 WCGHCKQLVPEYSK 66 (142)
Q Consensus 53 ~C~~C~~~~~~~~~ 66 (142)
.||+|+...|.+.-
T Consensus 11 ~CPhCRQ~ipALtL 24 (163)
T TIGR02652 11 RCPHCRQNIPALTL 24 (163)
T ss_pred cCchhhcccchhee
Confidence 79999999997643
No 355
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=37.70 E-value=13 Score=23.53 Aligned_cols=14 Identities=36% Similarity=0.925 Sum_probs=11.6
Q ss_pred CChhhhhhhHHHHH
Q psy7943 53 WCGHCKQLVPEYSK 66 (142)
Q Consensus 53 ~C~~C~~~~~~~~~ 66 (142)
.||+|+...|.+.-
T Consensus 8 ~CPhCRq~ipALtL 21 (161)
T PF09654_consen 8 QCPHCRQTIPALTL 21 (161)
T ss_pred cCchhhcccchhee
Confidence 79999999997643
No 356
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=37.68 E-value=82 Score=21.54 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=23.2
Q ss_pred CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeec
Q psy7943 51 APWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85 (142)
Q Consensus 51 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~ 85 (142)
...|+.|..+...++.....+... ++.++.|.-
T Consensus 82 ~~~C~gCs~~~D~~~g~l~hL~~r--d~tfa~vSr 114 (211)
T PF05988_consen 82 DEGCPGCSFWADHIDGALRHLHAR--DTTFAVVSR 114 (211)
T ss_pred CCCCCchhhhHhhhhhhHHHHHhC--CceEEEEeC
Confidence 447999999999997666667644 455555543
No 357
>PHA02151 hypothetical protein
Probab=37.68 E-value=21 Score=23.12 Aligned_cols=16 Identities=31% Similarity=0.945 Sum_probs=12.8
Q ss_pred hcCCcEEEEEECCCCh
Q psy7943 40 EKHDHILVEFYAPWCG 55 (142)
Q Consensus 40 ~~~~~~vv~f~~~~C~ 55 (142)
+++..-+|+||..||-
T Consensus 201 nr~h~~~v~fy~kwct 216 (217)
T PHA02151 201 NRNHDRYVHFYKKWCT 216 (217)
T ss_pred cccCceEEEEehhhcc
Confidence 3566679999999994
No 358
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=37.64 E-value=16 Score=24.27 Aligned_cols=19 Identities=16% Similarity=-0.080 Sum_probs=9.4
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
||+.++++++++++++|++
T Consensus 2 ~~~~lll~~~~l~LsgCas 20 (182)
T TIGR00752 2 GKKGLLFTALCFGLTGCIA 20 (182)
T ss_pred ceEEehHHHHHHHHhcccC
Confidence 4555555544444444443
No 359
>PF14369 zf-RING_3: zinc-finger
Probab=37.00 E-value=9.9 Score=17.81 Aligned_cols=11 Identities=36% Similarity=1.232 Sum_probs=7.7
Q ss_pred CCChhhhhhhH
Q psy7943 52 PWCGHCKQLVP 62 (142)
Q Consensus 52 ~~C~~C~~~~~ 62 (142)
-||..|.+...
T Consensus 3 ywCh~C~~~V~ 13 (35)
T PF14369_consen 3 YWCHQCNRFVR 13 (35)
T ss_pred EeCccCCCEeE
Confidence 48888886553
No 360
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=36.69 E-value=17 Score=16.67 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=7.5
Q ss_pred CchHHHHHHHHH
Q psy7943 1 MRRLSLLFLLIS 12 (142)
Q Consensus 1 Mk~~~~~~~~~~ 12 (142)
||++.+++.+..
T Consensus 1 MKkl~i~L~l~g 12 (33)
T PF10855_consen 1 MKKLAIILILGG 12 (33)
T ss_pred CCceeehhhhhh
Confidence 788777654443
No 361
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=36.53 E-value=1.1e+02 Score=21.16 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=15.3
Q ss_pred CcEEEeChhhHHHhhhcCCcEEEEE
Q psy7943 25 DGVLVLTQDNFQSSIEKHDHILVEF 49 (142)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~vv~f 49 (142)
+.+..++-+++++.+...++..|.|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~p~aViF 68 (237)
T TIGR01672 44 APIHWISVAQIENSLEGRPPIAVSF 68 (237)
T ss_pred CCeeEEEHHHHHHhcCCCCCeEEEE
Confidence 3455677777887776666634434
No 362
>PRK15240 resistance to complement killing; Provisional
Probab=36.13 E-value=34 Score=22.72 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=9.5
Q ss_pred CchHHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPLV 15 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~ 15 (142)
|||.+++.++++++.
T Consensus 1 Mkk~~~~~~~~~~~~ 15 (185)
T PRK15240 1 MKKIVLSSLLLSAAG 15 (185)
T ss_pred CchhHHHHHHHHHHH
Confidence 999887655544433
No 363
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=36.09 E-value=11 Score=26.72 Aligned_cols=7 Identities=29% Similarity=1.260 Sum_probs=5.3
Q ss_pred CChhhhh
Q psy7943 53 WCGHCKQ 59 (142)
Q Consensus 53 ~C~~C~~ 59 (142)
|||.||.
T Consensus 267 ~CP~CQ~ 273 (273)
T COG0266 267 YCPVCQK 273 (273)
T ss_pred eCCCCCC
Confidence 8888873
No 364
>COG3411 Ferredoxin [Energy production and conversion]
Probab=34.99 E-value=31 Score=18.68 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=20.3
Q ss_pred CCEEEEEeCCceEeeCcccccccccccchHHhhcc
Q psy7943 100 YPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 100 ~P~~~i~~~~~~~~~~g~~~~~~l~~~~~~~~~~~ 134 (142)
=|++++|.+| .+-+..++++. .+++++++.
T Consensus 17 gPvl~vYpeg---vWY~~V~p~~a--~rIv~~hl~ 46 (64)
T COG3411 17 GPVLVVYPEG---VWYTRVDPEDA--RRIVQSHLL 46 (64)
T ss_pred CCEEEEecCC---eeEeccCHHHH--HHHHHHHHh
Confidence 4889999888 43355566666 666766654
No 365
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=34.91 E-value=73 Score=16.71 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=11.7
Q ss_pred CCCcEEEeChhhHHHh
Q psy7943 23 EEDGVLVLTQDNFQSS 38 (142)
Q Consensus 23 ~~~~~~~~~~~~~~~~ 38 (142)
...++...++.++-+-
T Consensus 18 a~AQWvV~DP~NlAQ~ 33 (55)
T PF13605_consen 18 ARAQWVVTDPGNLAQN 33 (55)
T ss_pred ceeEEEEeCchHHHHH
Confidence 4456888888888773
No 366
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=34.56 E-value=14 Score=25.06 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=9.7
Q ss_pred CCChhhhhhhH
Q psy7943 52 PWCGHCKQLVP 62 (142)
Q Consensus 52 ~~C~~C~~~~~ 62 (142)
.|||.|++++.
T Consensus 12 GWCPnaka~e~ 22 (205)
T PF07895_consen 12 GWCPNAKALET 22 (205)
T ss_pred CcCcCcCcccc
Confidence 49999999986
No 367
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.44 E-value=41 Score=20.44 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=8.6
Q ss_pred CchHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPL 14 (142)
Q Consensus 1 Mk~~~~~~~~~~~~ 14 (142)
||++++.++.++++
T Consensus 1 MKkil~~ilall~~ 14 (113)
T COG5294 1 MKKILIGILALLLI 14 (113)
T ss_pred CcchHHHHHHHHHH
Confidence 89988754444433
No 368
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=33.96 E-value=58 Score=18.32 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=18.0
Q ss_pred CCCCEEEEEeCCce-Ee--eCcccccccccccchHHhh
Q psy7943 98 RGYPTLKFFKKRSI-IE--YGEVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 98 ~~~P~~~i~~~~~~-~~--~~g~~~~~~l~~~~~~~~~ 132 (142)
..-|++++++.+|. .. -...-+.+++ .+++.+.
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i~~w~~d~i--~efL~~k 75 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINIEKWKTDEI--EEFLNEK 75 (78)
T ss_dssp S---EEEEE-SSS--SEEEE-SSSSHCHH--HHHHHHH
T ss_pred CCCCEEEEEcCCCCEEEEEEcccCCHHHH--HHHHHHh
Confidence 35699999997662 22 2344477888 7777665
No 369
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=33.17 E-value=47 Score=20.69 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=7.3
Q ss_pred CchHHHHHHHHH
Q psy7943 1 MRRLSLLFLLIS 12 (142)
Q Consensus 1 Mk~~~~~~~~~~ 12 (142)
||+++++++++.
T Consensus 1 ~~~l~~~l~~l~ 12 (126)
T PRK10144 1 NKGLLTLLLLFT 12 (126)
T ss_pred CchHHHHHHHHH
Confidence 788666555433
No 370
>PF12771 SusD-like_2: Starch-binding associating with outer membrane; PDB: 3EJN_A 3FDH_A 3MX3_A.
Probab=33.10 E-value=14 Score=28.34 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHhh
Q psy7943 1 MRRLSLLFLLISPLVVF 17 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~ 17 (142)
|||.+++++++++++++
T Consensus 1 MKK~Il~i~l~~~~~sc 17 (488)
T PF12771_consen 1 MKKIILIILLALLLSSC 17 (488)
T ss_dssp -----------------
T ss_pred CcHHHHHHHHHHHHHhc
Confidence 99988776665444433
No 371
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=32.08 E-value=50 Score=23.01 Aligned_cols=58 Identities=9% Similarity=0.087 Sum_probs=36.3
Q ss_pred hHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCC
Q psy7943 34 NFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGV 97 (142)
Q Consensus 34 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i 97 (142)
.+.++...+++++. +.+.++.++.+...+.++.+.. .......++.++-+++..+||+
T Consensus 213 ~v~~A~~~g~pv~~--~~p~s~~a~~~~~la~ell~~~----~~~~~~~~~~~~~~~~~~~~~~ 270 (275)
T TIGR01287 213 IVQKAEIRKMTVIE--YDPESEQANEYRELAKKIYENT----EFVIPTPLTMDELEEILMKFGI 270 (275)
T ss_pred HHHHHHHcCCceEE--eCCCCHHHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHHHHHHHH
Confidence 45555556666543 4677777776666666654432 2345566677777788888876
No 372
>KOG4357|consensus
Probab=31.83 E-value=1.1e+02 Score=19.09 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=23.1
Q ss_pred hhhHHHhhhcCCcEEEEEE--CCCChhhhhhhHHHHHHHHHH
Q psy7943 32 QDNFQSSIEKHDHILVEFY--APWCGHCKQLVPEYSKAALQL 71 (142)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~--~~~C~~C~~~~~~~~~~~~~~ 71 (142)
++++-...++++..+++.. .|..|.-+...|..+++.+.+
T Consensus 54 pedil~mskkgktlmlfv~v~~psqp~~kd~rpftee~tqiw 95 (164)
T KOG4357|consen 54 PEDILKMSKKGKTLMLFVGVSDPSQPDEKDIRPFTEEITQIW 95 (164)
T ss_pred hHHHHHHhhcCceEEEEEEecCCCCCChhhccchhHHHHHHH
Confidence 4556666677888766655 334555555555545544444
No 373
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=31.76 E-value=1.5e+02 Score=20.02 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=13.3
Q ss_pred CcEEEeChhhHHHhhhcCCcEEE
Q psy7943 25 DGVLVLTQDNFQSSIEKHDHILV 47 (142)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~vv 47 (142)
+.+..++-.+++..+...++.-|
T Consensus 44 a~ihwiSvaqI~~SLeG~~Pi~V 66 (237)
T COG3700 44 APIHWISVAQIENSLEGRPPIAV 66 (237)
T ss_pred CCeeEEEHHHHHhhhcCCCCeeE
Confidence 34555666777776655555443
No 374
>PRK10397 lipoprotein; Provisional
Probab=31.62 E-value=34 Score=21.31 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=11.7
Q ss_pred CchHHHHHHHHHHHHhh
Q psy7943 1 MRRLSLLFLLISPLVVF 17 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~ 17 (142)
||+++++.+++.+..|+
T Consensus 1 mKKii~~~a~~~LaGCa 17 (137)
T PRK10397 1 MKKLAIAGALMALAGCA 17 (137)
T ss_pred CchhHHHHHHHHhhccc
Confidence 88888877666655554
No 375
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.50 E-value=1.2e+02 Score=18.19 Aligned_cols=68 Identities=24% Similarity=0.375 Sum_probs=36.3
Q ss_pred hHHHhhhcCCcEEEEEECC---CChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCC-CCCCEE-EEEeC
Q psy7943 34 NFQSSIEKHDHILVEFYAP---WCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGV-RGYPTL-KFFKK 108 (142)
Q Consensus 34 ~~~~~~~~~~~~vv~f~~~---~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i-~~~P~~-~i~~~ 108 (142)
.++..+++++.++..=.++ .|+.+......+.. . +. +.|..+|.-.+.++.+...- ..+||+ -+|-+
T Consensus 7 ~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~----~---g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~ 78 (105)
T COG0278 7 RIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSA----C---GV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVN 78 (105)
T ss_pred HHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHH----c---CC-cceeEEeeccCHHHHhccHhhcCCCCCceeeEC
Confidence 3445555555555444455 45555554443332 1 11 66777787777777665533 246665 23444
Q ss_pred C
Q psy7943 109 R 109 (142)
Q Consensus 109 ~ 109 (142)
|
T Consensus 79 G 79 (105)
T COG0278 79 G 79 (105)
T ss_pred C
Confidence 5
No 376
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=31.29 E-value=60 Score=20.46 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=11.7
Q ss_pred CchHHHHHHHHHHHHhh
Q psy7943 1 MRRLSLLFLLISPLVVF 17 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~ 17 (142)
||.+.++++.+++..+.
T Consensus 1 MR~l~~~LL~L~LsGCS 17 (133)
T PRK10781 1 MRALPICLLALMLTGCS 17 (133)
T ss_pred CchHHHHHHHHHHhhcc
Confidence 77877777766666554
No 377
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=30.97 E-value=38 Score=20.54 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=7.4
Q ss_pred CchHHHHHHHHH
Q psy7943 1 MRRLSLLFLLIS 12 (142)
Q Consensus 1 Mk~~~~~~~~~~ 12 (142)
||+.++.++.++
T Consensus 1 mKK~li~li~~i 12 (114)
T TIGR01655 1 MKKGLAILLALI 12 (114)
T ss_pred CceehHHHHHHH
Confidence 888777653333
No 378
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=30.85 E-value=1.4e+02 Score=21.58 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=49.5
Q ss_pred hhhcCCcEEEE---EECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEEEeCCceEee
Q psy7943 38 SIEKHDHILVE---FYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114 (142)
Q Consensus 38 ~~~~~~~~vv~---f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i~~~~~~~~~ 114 (142)
++..+.++++. |.|-.=-.=..++..+.++.+.+. ..++|+.=|.++.-++..+ +.++++|+...|
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~---kTivfVTHDidEA~kLadr--------i~vm~~G~i~Q~ 217 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELG---KTIVFVTHDIDEALKLADR--------IAVMDAGEIVQY 217 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhC---CEEEEEecCHHHHHhhhce--------EEEecCCeEEEe
Confidence 34444444442 444333333445556777776666 6899999998888777654 567887777766
Q ss_pred CcccccccccccchHHhhcc
Q psy7943 115 GEVTSVEYCYQRNWHKRAVT 134 (142)
Q Consensus 115 ~g~~~~~~l~~~~~~~~~~~ 134 (142)
....+.-.=++.+|+...++
T Consensus 218 ~~P~~il~~Pan~FV~~f~g 237 (309)
T COG1125 218 DTPDEILANPANDFVEDFFG 237 (309)
T ss_pred CCHHHHHhCccHHHHHHHhc
Confidence 54432211122445555444
No 379
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=30.59 E-value=1.5e+02 Score=19.11 Aligned_cols=43 Identities=16% Similarity=0.369 Sum_probs=33.4
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeec
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~ 85 (142)
.++...+.|+++.++.|.-+...+...++.+.+ .++.+-.+++
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~--~~v~i~~~~~ 168 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFE--LDVEIEHVEC 168 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTE--EEEEEEEEEC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCC--CCeEEEEecc
Confidence 456778889999999999999999999999983 2455544443
No 380
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=30.56 E-value=1.5e+02 Score=21.78 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=31.9
Q ss_pred CchHHHHHHHHHHHHh-hccCCCCCCc--EEEeChhhHHHhh-h------cCCcEEEEEECCCChhhhhhhHHHHHH
Q psy7943 1 MRRLSLLFLLISPLVV-FADDVTEEDG--VLVLTQDNFQSSI-E------KHDHILVEFYAPWCGHCKQLVPEYSKA 67 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~-~------~~~~~vv~f~~~~C~~C~~~~~~~~~~ 67 (142)
||+++.+++.+++... ..+.....++ +..+..++.-+.. . -+=+++ ..||-.+-......+.++
T Consensus 1 Mrr~l~lll~~~l~l~s~~av~A~~~~~~~VIlvsDn~aD~~lA~~iaellNA~Vl---ttpwg~ynes~~~eI~~l 74 (337)
T COG2247 1 MRRLLMLLLASLLALSSPPAVSAQSQNTTVVILVSDNEADLLLALPIAELLNAPVL---TTPWGIYNESVLDEIIEL 74 (337)
T ss_pred CccHHHHHHHHHHHHhcchhhhhhhcCceEEEEecchHHHHHHhhHHHHHhCCeeE---ecCcccccHHHHHHHHhh
Confidence 8887666554444333 2222233333 4445555544422 1 133333 678887777666555543
No 381
>COG3771 Predicted membrane protein [Function unknown]
Probab=30.35 E-value=1.2e+02 Score=17.66 Aligned_cols=7 Identities=14% Similarity=0.510 Sum_probs=3.5
Q ss_pred CchHHHH
Q psy7943 1 MRRLSLL 7 (142)
Q Consensus 1 Mk~~~~~ 7 (142)
||-++.+
T Consensus 1 mKyil~~ 7 (97)
T COG3771 1 MKYILIF 7 (97)
T ss_pred ChhHHHH
Confidence 6644443
No 382
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=30.28 E-value=2e+02 Score=20.26 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=23.4
Q ss_pred HHHHHcCCCC--CCEEEEEeCCceEeeCc--ccccccc
Q psy7943 90 ALAEQYGVRG--YPTLKFFKKRSIIEYGE--VTSVEYC 123 (142)
Q Consensus 90 ~~~~~~~i~~--~P~~~i~~~~~~~~~~g--~~~~~~l 123 (142)
.+.+.+++.. +..++++|+.+.+++.| ..+++++
T Consensus 205 ~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~ 242 (252)
T PF05176_consen 205 DIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEEL 242 (252)
T ss_pred HHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHH
Confidence 4556666653 56788889999999754 4455655
No 383
>PRK10386 curli assembly protein CsgE; Provisional
Probab=30.07 E-value=52 Score=20.62 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=9.8
Q ss_pred CchHHHHHHHHHHHHhh
Q psy7943 1 MRRLSLLFLLISPLVVF 17 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~ 17 (142)
||++...++..+++.++
T Consensus 1 ~~r~~~~~l~~~~l~~~ 17 (130)
T PRK10386 1 MKRYLRWIVAAELLFAA 17 (130)
T ss_pred ChhHHHHHHHHHHHHhC
Confidence 88877655444444433
No 384
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=30.06 E-value=1.2e+02 Score=19.42 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=25.0
Q ss_pred HHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHh
Q psy7943 35 FQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLA 72 (142)
Q Consensus 35 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~ 72 (142)
+...+.+.++-+|...+ +...|+.+...+.++.+...
T Consensus 55 l~~~i~~~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~ 91 (150)
T PF14639_consen 55 LKKFIEKHKPDVIAVGG-NSRESRKLYDDVRDIVEELD 91 (150)
T ss_dssp HHHHHHHH--SEEEE---SSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCeEEEEcC-CChhHHHHHHHHHHHHHHhh
Confidence 44466777887777754 78999999988888776654
No 385
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=29.87 E-value=27 Score=22.59 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=15.3
Q ss_pred CchHHHHHHHHHHHHhhccCCCCCCcEEEeChhhHHH
Q psy7943 1 MRRLSLLFLLISPLVVFADDVTEEDGVLVLTQDNFQS 37 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (142)
|++.++++++++++++|.....--.....++.+.|++
T Consensus 4 ~~~~~~~ll~~~ll~sC~~~~~vy~~y~~~p~~~W~k 40 (156)
T TIGR03511 4 VRNSISFFLGACVLVSCTENTDVYHSYQSTPHGGWQK 40 (156)
T ss_pred HHhHHHHHHHHHHhcccCCCCeEEEEeeECCccCcCC
Confidence 4444444444344444433220122344555555544
No 386
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=29.82 E-value=1.1e+02 Score=19.62 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=19.7
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHh
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLA 72 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~ 72 (142)
++..-++.-.+-|++|+ ..+..+++.+.
T Consensus 99 g~~~tm~Vdr~vC~~C~---~~i~~~a~~lG 126 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCG---GDIPSMAEKLG 126 (146)
T ss_pred CCeEEEEECcccchHHH---HHHHHHHHHcC
Confidence 44566667799999999 55566666554
No 387
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=29.69 E-value=46 Score=19.96 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=8.6
Q ss_pred CchHHHHHHHHHHHHh
Q psy7943 1 MRRLSLLFLLISPLVV 16 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~ 16 (142)
||++..+++.+++..+
T Consensus 5 mk~~~~l~~~l~LS~~ 20 (104)
T PRK14864 5 MRRFASLLLTLLLSAC 20 (104)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 6776655544444443
No 388
>PRK09934 fimbrial-like adhesin protein SfmF; Provisional
Probab=29.69 E-value=57 Score=21.18 Aligned_cols=14 Identities=21% Similarity=0.088 Sum_probs=8.8
Q ss_pred CchHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPL 14 (142)
Q Consensus 1 Mk~~~~~~~~~~~~ 14 (142)
|||+++.++.++++
T Consensus 1 m~~~~~~~~~~~~~ 14 (171)
T PRK09934 1 MRRVFFACFCGLLW 14 (171)
T ss_pred ChhHHHHHHHHHhh
Confidence 89887765544333
No 389
>PF05540 Serpulina_VSP: Serpulina hyodysenteriae variable surface protein; InterPro: IPR008838 This family consists of several variable surface proteins from Treponema hyodysenteriae (Serpulina hyodysenteriae).
Probab=29.37 E-value=44 Score=24.72 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=12.1
Q ss_pred CchHHHHHHHHHHHHhh
Q psy7943 1 MRRLSLLFLLISPLVVF 17 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~ 17 (142)
|||+++..+.++.++++
T Consensus 1 MKK~lLt~~alltia~~ 17 (377)
T PF05540_consen 1 MKKVLLTAIALLTIASA 17 (377)
T ss_pred CcchHHHHHHHHHHHhh
Confidence 99998877666665543
No 390
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=29.28 E-value=14 Score=26.10 Aligned_cols=10 Identities=40% Similarity=1.235 Sum_probs=7.7
Q ss_pred CChhhhhhhH
Q psy7943 53 WCGHCKQLVP 62 (142)
Q Consensus 53 ~C~~C~~~~~ 62 (142)
|||.||...|
T Consensus 257 ~Cp~CQ~~~~ 266 (269)
T PRK14811 257 FCPQCQPLRP 266 (269)
T ss_pred ECCCCcCCCC
Confidence 8888887654
No 391
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=28.99 E-value=49 Score=20.74 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=10.0
Q ss_pred CchHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPL 14 (142)
Q Consensus 1 Mk~~~~~~~~~~~~ 14 (142)
||+++.++++++++
T Consensus 1 m~~~~~~~~~~~~~ 14 (131)
T PF11948_consen 1 MKRFLALFLSVLSA 14 (131)
T ss_pred CcchHHHHHHHHHH
Confidence 89988876655554
No 392
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=28.96 E-value=99 Score=16.39 Aligned_cols=49 Identities=10% Similarity=-0.054 Sum_probs=28.1
Q ss_pred EEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccc-cHHHHHHcCC--CCCCEEE
Q psy7943 48 EFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ-HTALAEQYGV--RGYPTLK 104 (142)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i--~~~P~~~ 104 (142)
.|+.+.|++|.+..-.+.... ..+....+|... ...+. +.+. ..+|++.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~g-------l~~~~~~~~~~~~~~~~~-~~~p~~~~vP~l~ 54 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKG-------VPYEYVEEDLGNKSELLL-ASNPVHKKIPVLL 54 (74)
T ss_pred EEECCCCchHHHHHHHHHHcC-------CCCEEEEeCcccCCHHHH-HhCCCCCCCCEEE
Confidence 466778999998876555431 234444455432 22333 3443 5799885
No 393
>PRK14762 membrane protein; Provisional
Probab=28.49 E-value=62 Score=13.90 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=7.8
Q ss_pred CchHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPL 14 (142)
Q Consensus 1 Mk~~~~~~~~~~~~ 14 (142)
||-+.+.++++++.
T Consensus 1 mki~lw~i~iifli 14 (27)
T PRK14762 1 MKIILWAVLIIFLI 14 (27)
T ss_pred CeeHHHHHHHHHHH
Confidence 66666655555443
No 394
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=28.27 E-value=51 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHHHHhh
Q psy7943 1 MRRLSLLFLLISPLVVF 17 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~ 17 (142)
||.+.++++++++++|+
T Consensus 1 ~k~l~~~~~~~lL~~Cs 17 (204)
T PF11873_consen 1 KKKLLLLLIALLLSGCS 17 (204)
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 67777766666655554
No 395
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=28.23 E-value=52 Score=18.42 Aligned_cols=12 Identities=42% Similarity=0.811 Sum_probs=7.0
Q ss_pred CchHHHHHHHHH
Q psy7943 1 MRRLSLLFLLIS 12 (142)
Q Consensus 1 Mk~~~~~~~~~~ 12 (142)
||++++++++++
T Consensus 1 ~kn~~l~~~vv~ 12 (74)
T PF02553_consen 1 MKNLLLLLLVVA 12 (74)
T ss_pred CceeHHHHHHHH
Confidence 677666655443
No 396
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=28.18 E-value=1e+02 Score=16.33 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=30.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecc----ccHHHHHHcCCCCCCEEE
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT----QHTALAEQYGVRGYPTLK 104 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~i~~~P~~~ 104 (142)
+-.|+.+.|+.|++..-.+.... ..+....+|.. ....+.+......+|++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~-------i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG-------VDYELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC-------CCcEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 34566777999988876555421 23445555542 223455555566789874
No 397
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=28.18 E-value=73 Score=16.71 Aligned_cols=7 Identities=14% Similarity=0.102 Sum_probs=3.9
Q ss_pred CchHHHH
Q psy7943 1 MRRLSLL 7 (142)
Q Consensus 1 Mk~~~~~ 7 (142)
||+.+..
T Consensus 1 mk~~~~s 7 (58)
T COG5567 1 MKNVFKS 7 (58)
T ss_pred ChhHHHH
Confidence 6665543
No 398
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=27.98 E-value=1.9e+02 Score=19.27 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=25.5
Q ss_pred EECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEE
Q psy7943 49 FYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104 (142)
Q Consensus 49 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~ 104 (142)
|+...||+|++..-.+.... ..+..+.++..+.....+.-....+|++.
T Consensus 3 y~~~~sp~~~kvr~~L~~~g-------l~~e~~~~~~~~~~~~~~~np~g~vP~l~ 51 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKN-------IPVEKHVLLNDDEETPIRMIGAKQVPILQ 51 (209)
T ss_pred ecCCCCChHHHHHHHHHHcC-------CCeEEEECCCCcchhHHHhcCCCCcceEE
Confidence 55677999987665444421 23333444433333333322335689774
No 399
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=27.18 E-value=1.9e+02 Score=19.29 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=24.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEe
Q psy7943 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (142)
+-+|+..-||+|---.+.+.++..... ..+.+-.+
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~---v~i~~~P~ 37 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWN---VDITYVPV 37 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhC---CeEEEEee
Confidence 445677799999999999998876543 34444443
No 400
>PRK10387 glutaredoxin 2; Provisional
Probab=26.91 E-value=1.9e+02 Score=18.95 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=27.4
Q ss_pred EEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCCCCCEEEE
Q psy7943 48 EFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF 105 (142)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P~~~i 105 (142)
.|+.+.||+|.+..-.+... +..+....++..+.....+..+...+|+++.
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~-------gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~ 53 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLK-------NIPVELIVLANDDEATPIRMIGQKQVPILQK 53 (210)
T ss_pred EEeCCCCchHHHHHHHHHHc-------CCCeEEEEcCCCchhhHHHhcCCcccceEEe
Confidence 35677899999877554442 1234444455443322222223346888853
No 401
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=26.60 E-value=65 Score=21.88 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=19.0
Q ss_pred cEEEeChhhHHHhhhcCCcEEEEEECC
Q psy7943 26 GVLVLTQDNFQSSIEKHDHILVEFYAP 52 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~ 52 (142)
....++++.|+.+...+++++..|++-
T Consensus 83 hPhglsd~~Fd~lFT~DkPViFafHGY 109 (203)
T PF09363_consen 83 HPHGLSDEEFDALFTKDKPVIFAFHGY 109 (203)
T ss_dssp -TTS--HHHHHHHH-SSS-EEEEESSE
T ss_pred CCCcCCHHHHHHhcCCCCCEEEEcCCC
Confidence 345578899999999999999999875
No 402
>PRK13697 cytochrome c6; Provisional
Probab=26.43 E-value=66 Score=18.93 Aligned_cols=11 Identities=18% Similarity=0.673 Sum_probs=7.8
Q ss_pred ECCCChhhhhh
Q psy7943 50 YAPWCGHCKQL 60 (142)
Q Consensus 50 ~~~~C~~C~~~ 60 (142)
|...|..|...
T Consensus 35 y~~~C~~CHg~ 45 (111)
T PRK13697 35 FSANCASCHAG 45 (111)
T ss_pred HHHHHHHhCCC
Confidence 35678888874
No 403
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=26.41 E-value=83 Score=23.83 Aligned_cols=33 Identities=9% Similarity=0.169 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCCceEEEEeeccccHHHHHHcC
Q psy7943 64 YSKAALQLATDGHDIKLAKVDATQHTALAEQYG 96 (142)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~ 96 (142)
+..+.+.....+..+.++.-+.++..++.+.||
T Consensus 365 ve~L~e~a~~~Ga~V~iiS~~~eeG~ql~~~fG 397 (409)
T TIGR00108 365 IEWLSELAENFGAKLEFISTESEEGAQLLTAFG 397 (409)
T ss_pred HHHHHHHHHHcCCEEEEECCCChhHHHHHHhCC
Confidence 456666666666788888777777777777664
No 404
>COG5645 Predicted periplasmic lipoprotein [General function prediction only]
Probab=26.39 E-value=40 Score=19.06 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=12.7
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
|+++.+.+.+.+++..+++
T Consensus 1 mr~i~l~l~v~lllSGC~S 19 (80)
T COG5645 1 MRNILLSLMVLLLLSGCGS 19 (80)
T ss_pred CceehHHHHHHHHhCccce
Confidence 7888887777755555543
No 405
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=26.39 E-value=72 Score=19.48 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=10.0
Q ss_pred CchHHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPLV 15 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~ 15 (142)
||+++..+++.+++.
T Consensus 1 mk~~~~~~~~~~~~~ 15 (115)
T PRK09838 1 MKKALKVAMFSLFSV 15 (115)
T ss_pred CchHHHHHHHHHHHH
Confidence 888877665555544
No 406
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=26.37 E-value=19 Score=25.47 Aligned_cols=7 Identities=29% Similarity=1.360 Sum_probs=4.4
Q ss_pred CChhhhh
Q psy7943 53 WCGHCKQ 59 (142)
Q Consensus 53 ~C~~C~~ 59 (142)
|||.||.
T Consensus 267 ~CP~CQ~ 273 (274)
T PRK01103 267 FCPRCQK 273 (274)
T ss_pred ECcCCCC
Confidence 6666664
No 407
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=26.36 E-value=67 Score=23.97 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=9.0
Q ss_pred CchHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPL 14 (142)
Q Consensus 1 Mk~~~~~~~~~~~~ 14 (142)
|++++++++++++.
T Consensus 1 M~~~~~~~~~~~~~ 14 (409)
T TIGR00540 1 MFKVLFLFLLLIAG 14 (409)
T ss_pred ChHHHHHHHHHHHH
Confidence 88888765544444
No 408
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=26.33 E-value=67 Score=23.92 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=8.9
Q ss_pred CchHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPL 14 (142)
Q Consensus 1 Mk~~~~~~~~~~~~ 14 (142)
|++++++++++++.
T Consensus 1 M~r~l~~~~~l~~~ 14 (398)
T PRK10747 1 MLKVLLLFVLLIAG 14 (398)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888765444444
No 409
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=26.16 E-value=45 Score=22.72 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=17.4
Q ss_pred HHHHHHcCCCCCCEEEEE-eCCce
Q psy7943 89 TALAEQYGVRGYPTLKFF-KKRSI 111 (142)
Q Consensus 89 ~~~~~~~~i~~~P~~~i~-~~~~~ 111 (142)
..+.++|+|+.+|+++-- .+|..
T Consensus 173 G~Lt~rF~I~~VPAvV~~~q~G~~ 196 (209)
T PRK13738 173 GVLCQRFGIDQVPARVSAVPGGRF 196 (209)
T ss_pred chHHHhcCCeeeceEEEEcCCCCE
Confidence 468999999999999751 34443
No 410
>PF13985 YbgS: YbgS-like protein
Probab=25.89 E-value=66 Score=19.69 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=10.0
Q ss_pred CchHHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPLV 15 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~ 15 (142)
|+|+..+||...+..
T Consensus 1 M~Klatl~LTAtl~L 15 (122)
T PF13985_consen 1 MTKLATLFLTATLTL 15 (122)
T ss_pred CchHHHHHHHHHHHh
Confidence 888887776655443
No 411
>PHA02823 chemokine binding protein; Provisional
Probab=25.84 E-value=54 Score=22.38 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=13.1
Q ss_pred CchHHHHHHHHHHHHhh
Q psy7943 1 MRRLSLLFLLISPLVVF 17 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~ 17 (142)
|++.+.++++++.+.+.
T Consensus 1 m~~~~v~~~~cl~a~~~ 17 (255)
T PHA02823 1 MKRLIVLACMCLAATAA 17 (255)
T ss_pred CceehhHHHHHHHHHhc
Confidence 88888888888776654
No 412
>PRK15272 pertussis toxin-like subunit ArtA; Provisional
Probab=25.74 E-value=11 Score=25.70 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=21.9
Q ss_pred CchHHHHHHHHHHHHhhccCCCCCCcEEEeChhhHHHhhhc
Q psy7943 1 MRRLSLLFLLISPLVVFADDVTEEDGVLVLTQDNFQSSIEK 41 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (142)
|||.+++++.++.+...+ +..+...+..+++...+.
T Consensus 1 mkk~i~~~~~~~sf~~~A-----pd~VyRVDtRp~~eIF~~ 36 (242)
T PRK15272 1 MKKLIFLTLSIVSFNNYA-----VDFVYRVDSTPPDVIFRD 36 (242)
T ss_pred CcceEeEeeeeeeccccC-----ceEEEEcCCCCHHHHHhh
Confidence 888877555444333221 556777777777776553
No 413
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=25.50 E-value=80 Score=16.21 Aligned_cols=30 Identities=10% Similarity=0.286 Sum_probs=23.6
Q ss_pred hHHHhhhc-CCcEEEEEECCCChhhhhhhHH
Q psy7943 34 NFQSSIEK-HDHILVEFYAPWCGHCKQLVPE 63 (142)
Q Consensus 34 ~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~ 63 (142)
.++...++ +...++.+....|..|....|.
T Consensus 4 ~Y~rl~~~~~g~~va~v~~~~C~gC~~~l~~ 34 (56)
T PF02591_consen 4 EYERLRKRKGGVAVARVEGGTCSGCHMELPP 34 (56)
T ss_pred HHHHHHhhcCCcEEEEeeCCccCCCCEEcCH
Confidence 35555555 7889999999999999988774
No 414
>PRK02935 hypothetical protein; Provisional
Probab=25.42 E-value=22 Score=21.33 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=12.4
Q ss_pred CChhhhhhhHHHHHH
Q psy7943 53 WCGHCKQLVPEYSKA 67 (142)
Q Consensus 53 ~C~~C~~~~~~~~~~ 67 (142)
+||.|.+..+.+.+.
T Consensus 72 ~CP~C~K~TKmLGrv 86 (110)
T PRK02935 72 ICPSCEKPTKMLGRV 86 (110)
T ss_pred ECCCCCchhhhccce
Confidence 899999998877653
No 415
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=25.10 E-value=2.1e+02 Score=18.93 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=32.5
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeecccc-HHHHHHcCCCCCCEEE
Q psy7943 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH-TALAEQYGVRGYPTLK 104 (142)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~~P~~~ 104 (142)
.+-.|+.++|+.|++..-.+... +..+....+|.+.. .++.+..-...+|++.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~-------gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~ 63 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEK-------GVSVEIEQVEKDNLPQDLIDLNPYQSVPTLV 63 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHC-------CCCCEEEeCCcccCCHHHHHhCCCCCCCEEE
Confidence 35556667899999988655542 13455566665432 3455444445789995
No 416
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=24.89 E-value=21 Score=25.23 Aligned_cols=6 Identities=50% Similarity=1.829 Sum_probs=4.0
Q ss_pred CChhhh
Q psy7943 53 WCGHCK 58 (142)
Q Consensus 53 ~C~~C~ 58 (142)
|||.||
T Consensus 266 ~CP~CQ 271 (272)
T PRK14810 266 YCPHCQ 271 (272)
T ss_pred ECcCCc
Confidence 666665
No 417
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=24.73 E-value=76 Score=19.04 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=11.2
Q ss_pred CchHHHHHHHHHHHHhhc
Q psy7943 1 MRRLSLLFLLISPLVVFA 18 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~ 18 (142)
|++++...+.+++++.++
T Consensus 1 ~~~~~~~~l~~lvl~L~~ 18 (110)
T PF10828_consen 1 MKKYIYIALAVLVLGLGG 18 (110)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 788877666555544443
No 418
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=24.58 E-value=2.8e+02 Score=20.06 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=37.7
Q ss_pred cCCc-EEEEEEC--CCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHH----HHcCCCCCCEEEEEeCCce
Q psy7943 41 KHDH-ILVEFYA--PWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALA----EQYGVRGYPTLKFFKKRSI 111 (142)
Q Consensus 41 ~~~~-~vv~f~~--~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~i~~~P~~~i~~~~~~ 111 (142)
++.. +-|+|.. +.-++|+.....+.+-+ ..+.-+.+|.-.+..+. +.-.-+++|.++++++.+.
T Consensus 116 ~g~Tr~~vy~qPp~~~~p~IKE~vR~~I~~A-------~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~~~ 186 (284)
T PF07894_consen 116 KGVTRATVYFQPPKDGQPHIKEVVRRMIQQA-------QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQNL 186 (284)
T ss_pred cCCceEEEEeCCCCCCCCCHHHHHHHHHHHh-------cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechhcC
Confidence 3444 5555655 34566665555443322 35666778876665443 2224568999999988753
No 419
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=24.26 E-value=1.3e+02 Score=17.16 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=18.0
Q ss_pred CCCcEEEeChhhHHHhhhcCCcEEEEEECC
Q psy7943 23 EEDGVLVLTQDNFQSSIEKHDHILVEFYAP 52 (142)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~ 52 (142)
.......++-.+|.+.+++++..=|.+...
T Consensus 23 ~~~~~~~i~YS~F~~~l~~g~V~~V~i~~~ 52 (110)
T PF06480_consen 23 NNSQTKEISYSEFLQMLEKGNVKKVVIQND 52 (110)
T ss_dssp ---SSEE--HHHHHHTGGGT-EEEEEEETT
T ss_pred ccCCCcEECHHHHHHHHHcCCEEEEEEECC
Confidence 334556777788888888888877767654
No 420
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=24.21 E-value=74 Score=18.91 Aligned_cols=21 Identities=14% Similarity=0.624 Sum_probs=15.7
Q ss_pred EEEEECCCChhhhhhhHH-HHH
Q psy7943 46 LVEFYAPWCGHCKQLVPE-YSK 66 (142)
Q Consensus 46 vv~f~~~~C~~C~~~~~~-~~~ 66 (142)
|-.||.+-||.|+++... +..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 567889999999998543 443
No 421
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=24.10 E-value=1.2e+02 Score=19.30 Aligned_cols=10 Identities=0% Similarity=0.049 Sum_probs=5.6
Q ss_pred EEeChhhHHH
Q psy7943 28 LVLTQDNFQS 37 (142)
Q Consensus 28 ~~~~~~~~~~ 37 (142)
.+.+++++.+
T Consensus 28 ~tysp~~l~~ 37 (142)
T TIGR03042 28 PTYSPAQLAQ 37 (142)
T ss_pred CCCCHHHHHH
Confidence 3555666555
No 422
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=24.00 E-value=23 Score=25.18 Aligned_cols=6 Identities=50% Similarity=2.123 Sum_probs=4.1
Q ss_pred CChhhh
Q psy7943 53 WCGHCK 58 (142)
Q Consensus 53 ~C~~C~ 58 (142)
|||.||
T Consensus 276 ~CP~CQ 281 (282)
T PRK13945 276 WCPNCQ 281 (282)
T ss_pred ECCCCc
Confidence 677776
No 423
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=23.84 E-value=1e+02 Score=17.54 Aligned_cols=11 Identities=55% Similarity=0.658 Sum_probs=7.6
Q ss_pred CchHHHHHHHH
Q psy7943 1 MRRLSLLFLLI 11 (142)
Q Consensus 1 Mk~~~~~~~~~ 11 (142)
||++++..+.+
T Consensus 1 MR~~~~aa~a~ 11 (82)
T PF12071_consen 1 MRRLLLAALAL 11 (82)
T ss_pred ChhHHHHHHHH
Confidence 88887765554
No 424
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=23.61 E-value=1.3e+02 Score=17.26 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=20.7
Q ss_pred Chhh--hhhhHHHHHHHHHHhcCCC-ceEEEEeecc
Q psy7943 54 CGHC--KQLVPEYSKAALQLATDGH-DIKLAKVDAT 86 (142)
Q Consensus 54 C~~C--~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~ 86 (142)
|..| +.....+.++....+.... -+..+.+|..
T Consensus 36 ~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 36 CGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 7777 6677777777665543323 3677777744
No 425
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=23.38 E-value=27 Score=18.11 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPL 14 (142)
Q Consensus 1 Mk~~~~~~~~~~~~ 14 (142)
||..++++++++++
T Consensus 1 Mk~p~~llllvlll 14 (56)
T PF08138_consen 1 MKTPIFLLLLVLLL 14 (56)
T ss_dssp --------------
T ss_pred CcchHHHHHHHHHH
Confidence 66666555544443
No 426
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=23.19 E-value=1.9e+02 Score=17.68 Aligned_cols=88 Identities=13% Similarity=0.216 Sum_probs=63.0
Q ss_pred CCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHH----HHHHcCCC-CCCEEEEEeCCc----eE
Q psy7943 42 HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA----LAEQYGVR-GYPTLKFFKKRS----II 112 (142)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~-~~P~~~i~~~~~----~~ 112 (142)
+...++-|-..--+.-..+.+.+.++++.+. .+.++.++=+|.++-+- ..+.|+|. +-|.+-+++-.. =.
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt-~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~ 98 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNT-DNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWM 98 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcC-cCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeE
Confidence 5677888999999999999999999999988 45788999999876543 34456665 358887776432 12
Q ss_pred eeC---cccccccccccchHHhh
Q psy7943 113 EYG---EVTSVEYCYQRNWHKRA 132 (142)
Q Consensus 113 ~~~---g~~~~~~l~~~~~~~~~ 132 (142)
+.. ...+.++| ..|++..
T Consensus 99 ~m~~~~d~~t~~~L--e~WiedV 119 (120)
T cd03074 99 EMDDDEDLPTAEEL--EDWIEDV 119 (120)
T ss_pred ecccccccCcHHHH--HHHHHhh
Confidence 222 23567778 8887764
No 427
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=23.18 E-value=84 Score=20.44 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=8.8
Q ss_pred CchHHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPLV 15 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~ 15 (142)
||+.++.++.+.++.
T Consensus 1 mkr~Lla~la~~~ll 15 (176)
T COG4314 1 MKRTLLAILAVTALL 15 (176)
T ss_pred CchhHHHHHHHHHHH
Confidence 788777655444433
No 428
>PF07403 DUF1505: Protein of unknown function (DUF1505); InterPro: IPR009981 This family consists of several uncharacterised Caenorhabditis elegans proteins of around 115 resides in length. Members of this family contain 6 highly conserved cysteine residues. The function of this family is unknown.
Probab=23.04 E-value=1.4e+02 Score=18.32 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=8.6
Q ss_pred CchHHHHHHHHHHHHhh
Q psy7943 1 MRRLSLLFLLISPLVVF 17 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~ 17 (142)
|+.+++..+++.+.++.
T Consensus 1 Mnf~~~~vl~lsv~vA~ 17 (114)
T PF07403_consen 1 MNFFPSTVLLLSVTVAL 17 (114)
T ss_pred CCchhhhHHHHHHHHHh
Confidence 67666544444433333
No 429
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=22.72 E-value=2.5e+02 Score=19.48 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=10.5
Q ss_pred cEEEeChhhHHHhhhcCCc
Q psy7943 26 GVLVLTQDNFQSSIEKHDH 44 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~ 44 (142)
.+..++-+++++.+...++
T Consensus 45 ~~~~~~~~~~~~~~~~~~p 63 (237)
T PRK11009 45 PVHWVSVAQIEKSLEGRPP 63 (237)
T ss_pred CeeEEEHHHhhhhccCCCC
Confidence 3555666677765543333
No 430
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=22.70 E-value=59 Score=21.90 Aligned_cols=18 Identities=22% Similarity=0.181 Sum_probs=9.7
Q ss_pred CchHHHHHHHHHHHHhhc
Q psy7943 1 MRRLSLLFLLISPLVVFA 18 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~ 18 (142)
||+...++++.+++..|+
T Consensus 4 ~k~~~~il~~al~l~GCs 21 (200)
T COG3417 4 MKIYASILLLALFLSGCS 21 (200)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 455555555555555555
No 431
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=22.40 E-value=1.4e+02 Score=17.42 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.5
Q ss_pred cccHHHHHHcC-CCCCCEEEEE
Q psy7943 86 TQHTALAEQYG-VRGYPTLKFF 106 (142)
Q Consensus 86 ~~~~~~~~~~~-i~~~P~~~i~ 106 (142)
+.+.++.+++. +.++|.+++-
T Consensus 71 T~D~~Lr~~lr~~~GvPvi~l~ 92 (101)
T PF04900_consen 71 TQDKELRRRLRKIPGVPVIYLR 92 (101)
T ss_pred ecCHHHHHHHhcCCCCCEEEEE
Confidence 45688888888 8999999886
No 432
>KOG0095|consensus
Probab=22.30 E-value=2.4e+02 Score=18.44 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=30.7
Q ss_pred hhHHHhhh---cCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcC
Q psy7943 33 DNFQSSIE---KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATD 74 (142)
Q Consensus 33 ~~~~~~~~---~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~ 74 (142)
+-|....+ ++-..+|..|.-.|.+.-.-.|.+..-.++|.++
T Consensus 67 erfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~ 111 (213)
T KOG0095|consen 67 ERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANN 111 (213)
T ss_pred HHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhc
Confidence 33544443 3556778888999999999999988877778754
No 433
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=22.19 E-value=73 Score=23.65 Aligned_cols=18 Identities=17% Similarity=0.229 Sum_probs=12.9
Q ss_pred CchHHHHHHHHHHHHhhc
Q psy7943 1 MRRLSLLFLLISPLVVFA 18 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~ 18 (142)
|||++.+++.++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~c~ 18 (355)
T PRK15175 1 MKKIIILLTTFFLLSGCT 18 (355)
T ss_pred ChhHHHHHHHHHHHhhcC
Confidence 899887776666656555
No 434
>PRK13791 lysozyme inhibitor; Provisional
Probab=22.10 E-value=67 Score=19.58 Aligned_cols=11 Identities=9% Similarity=0.301 Sum_probs=4.7
Q ss_pred CchHHHHHHHH
Q psy7943 1 MRRLSLLFLLI 11 (142)
Q Consensus 1 Mk~~~~~~~~~ 11 (142)
||++++.++++
T Consensus 4 mk~~~~~~~~~ 14 (113)
T PRK13791 4 RKLIPFTLFLA 14 (113)
T ss_pred HHHHHHHHHHH
Confidence 45544444333
No 435
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.09 E-value=1.3e+02 Score=20.32 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=13.1
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
||.+..+.+++++..+.++
T Consensus 1 mk~~~~lalll~s~~a~Aa 19 (199)
T PF11355_consen 1 MKTYILLALLLLSSSAFAA 19 (199)
T ss_pred CchHHHHHHHHHhhhhhhc
Confidence 8888887777776555444
No 436
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=22.08 E-value=1e+02 Score=17.81 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=7.8
Q ss_pred CchHHHHHHHHH
Q psy7943 1 MRRLSLLFLLIS 12 (142)
Q Consensus 1 Mk~~~~~~~~~~ 12 (142)
||+.+++..+++
T Consensus 1 mk~klll~aviL 12 (85)
T PRK09973 1 MKTIFTVGAVVL 12 (85)
T ss_pred CchhHHHHHHHH
Confidence 788777655444
No 437
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=22.08 E-value=68 Score=22.81 Aligned_cols=15 Identities=40% Similarity=0.355 Sum_probs=10.9
Q ss_pred CchHHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPLV 15 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~ 15 (142)
|||.++.++++.++.
T Consensus 1 Mkk~~l~~~l~sal~ 15 (268)
T PF12262_consen 1 MKKLLLSSALASALG 15 (268)
T ss_pred CchHHHHHHHHHHHH
Confidence 999988766665554
No 438
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=22.06 E-value=95 Score=17.57 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=15.5
Q ss_pred CCChhhhhhhHHHHHHHHHHh
Q psy7943 52 PWCGHCKQLVPEYSKAALQLA 72 (142)
Q Consensus 52 ~~C~~C~~~~~~~~~~~~~~~ 72 (142)
..|+.|+........+...+.
T Consensus 37 ~~C~~C~~e~~~~~~~~~~L~ 57 (84)
T TIGR02949 37 EACPECLEEYGLEQAVKKLLK 57 (84)
T ss_pred HhCHHHHHHHHHHHHHHHHHH
Confidence 479999999876666655544
No 439
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=22.03 E-value=2e+02 Score=18.27 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=8.2
Q ss_pred cCCcEEEEEECC
Q psy7943 41 KHDHILVEFYAP 52 (142)
Q Consensus 41 ~~~~~vv~f~~~ 52 (142)
+..+++|.+|.-
T Consensus 45 ~p~PvvvrvyqL 56 (146)
T TIGR03352 45 RASPVVVRVYEL 56 (146)
T ss_pred CccCeEEEEEEE
Confidence 356788888854
No 440
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.91 E-value=1.9e+02 Score=17.15 Aligned_cols=68 Identities=9% Similarity=0.067 Sum_probs=31.0
Q ss_pred eChhhHHHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHcCCC
Q psy7943 30 LTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVR 98 (142)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~ 98 (142)
.+.+++...+.+.++-+|-++...-.+-......+..+.+... .+..+..+..-.....+..+..|.+
T Consensus 37 ~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~-~~~~i~vGG~~~~~~~~~~~~~G~D 104 (119)
T cd02067 37 VPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGL-DDIPVLVGGAIVTRDFKFLKEIGVD 104 (119)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCC-CCCeEEEECCCCChhHHHHHHcCCe
Confidence 3456677766677776666665533333333333333333322 1122333332223333455555543
No 441
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=21.76 E-value=98 Score=19.01 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=14.8
Q ss_pred CCCCEEEEEeCCceE--eeCcc
Q psy7943 98 RGYPTLKFFKKRSII--EYGEV 117 (142)
Q Consensus 98 ~~~P~~~i~~~~~~~--~~~g~ 117 (142)
+-||++++..+|..+ +|..+
T Consensus 43 R~Ypv~lV~pDGSTI~Iry~EP 64 (116)
T PF09776_consen 43 RLYPVLLVRPDGSTINIRYHEP 64 (116)
T ss_pred hhccEEEEecCCCEEEEeccCh
Confidence 359999999999844 45544
No 442
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.65 E-value=1.7e+02 Score=19.30 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=6.7
Q ss_pred CchHHHHHHHHH
Q psy7943 1 MRRLSLLFLLIS 12 (142)
Q Consensus 1 Mk~~~~~~~~~~ 12 (142)
|+++++++++++
T Consensus 1 m~~~~~~~~~~~ 12 (167)
T PF05404_consen 1 MKKIVALLALLV 12 (167)
T ss_pred ChhHHHHHHHHH
Confidence 788844444433
No 443
>PRK15289 lpfA fimbrial protein; Provisional
Probab=21.57 E-value=1.4e+02 Score=19.69 Aligned_cols=8 Identities=25% Similarity=0.007 Sum_probs=5.0
Q ss_pred CchHHHHH
Q psy7943 1 MRRLSLLF 8 (142)
Q Consensus 1 Mk~~~~~~ 8 (142)
||+.++..
T Consensus 1 mk~~~~~~ 8 (190)
T PRK15289 1 MKRNIIGG 8 (190)
T ss_pred CcHHHHHH
Confidence 78865543
No 444
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=21.56 E-value=42 Score=20.86 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
||+..+++.++++..++.+
T Consensus 1 MK~~~~~~s~~l~~~~~~a 19 (124)
T PF14263_consen 1 MKKSYMLASVALASFSFSA 19 (124)
T ss_dssp -------------------
T ss_pred CchhHHHHHHHHHHHHHhh
Confidence 7876666545544444433
No 445
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=21.44 E-value=78 Score=23.55 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=41.3
Q ss_pred cCCcEEEEEECCCChhhhhhhHHHHHHHHHH----hcCCCceEEEEeecccc---HHHHHHcCCC-C-CCEEEEEeCCce
Q psy7943 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQL----ATDGHDIKLAKVDATQH---TALAEQYGVR-G-YPTLKFFKKRSI 111 (142)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~----~~~~~~~~~~~vd~~~~---~~~~~~~~i~-~-~P~~~i~~~~~~ 111 (142)
+.++-+| .||.|-+..-.+.++.+.. .....++....+.|--| +.-...+|+- + --...+|.+|+.
T Consensus 263 ~~g~~~I-----SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~ 337 (359)
T PF04551_consen 263 KRGPEII-----SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEV 337 (359)
T ss_dssp -SS-EEE-----E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEE
T ss_pred cCCceee-----eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEE
Confidence 3455444 3777766655555555443 32334678888888543 2223345554 3 334778888887
Q ss_pred Ee-e-CcccccccccccchHHh
Q psy7943 112 IE-Y-GEVTSVEYCYQRNWHKR 131 (142)
Q Consensus 112 ~~-~-~g~~~~~~l~~~~~~~~ 131 (142)
++ . ....-.+.| .+.+++
T Consensus 338 v~k~~~ee~~vd~L--~~~I~~ 357 (359)
T PF04551_consen 338 VKKVIPEEEIVDEL--IELIEE 357 (359)
T ss_dssp EEEE-CSTCHHHHH--HHHHHH
T ss_pred EEecCCHHHHHHHH--HHHHHh
Confidence 76 4 444445555 555544
No 446
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=21.39 E-value=57 Score=20.81 Aligned_cols=14 Identities=43% Similarity=0.465 Sum_probs=8.6
Q ss_pred CchHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPL 14 (142)
Q Consensus 1 Mk~~~~~~~~~~~~ 14 (142)
||+..++.++++++
T Consensus 1 mk~~~l~a~l~~~~ 14 (142)
T PF10614_consen 1 MKYRGLLALLLLLL 14 (142)
T ss_pred CcEeHHHHHHHHHH
Confidence 88877755544443
No 447
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=21.38 E-value=30 Score=16.48 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=4.3
Q ss_pred CCChhhhhhh
Q psy7943 52 PWCGHCKQLV 61 (142)
Q Consensus 52 ~~C~~C~~~~ 61 (142)
-||.+|....
T Consensus 4 yyCdyC~~~~ 13 (38)
T PF06220_consen 4 YYCDYCKKYL 13 (38)
T ss_dssp -B-TTT--B-
T ss_pred eeccccccee
Confidence 3799998877
No 448
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.31 E-value=28 Score=24.61 Aligned_cols=6 Identities=33% Similarity=1.536 Sum_probs=3.4
Q ss_pred CChhhh
Q psy7943 53 WCGHCK 58 (142)
Q Consensus 53 ~C~~C~ 58 (142)
|||.||
T Consensus 267 ~CP~CQ 272 (272)
T TIGR00577 267 FCPQCQ 272 (272)
T ss_pred ECCCCC
Confidence 566654
No 449
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=21.25 E-value=97 Score=18.66 Aligned_cols=17 Identities=47% Similarity=0.745 Sum_probs=14.1
Q ss_pred HHHHHHcCCCCCCEEEE
Q psy7943 89 TALAEQYGVRGYPTLKF 105 (142)
Q Consensus 89 ~~~~~~~~i~~~P~~~i 105 (142)
..+.++++++.||.++-
T Consensus 83 ddLa~rL~l~hYPvLit 99 (105)
T TIGR03765 83 DDLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHhCCCcccEEEe
Confidence 37889999999998853
No 450
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=21.11 E-value=87 Score=19.12 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=11.9
Q ss_pred HHHcCCCCCCEEEE
Q psy7943 92 AEQYGVRGYPTLKF 105 (142)
Q Consensus 92 ~~~~~i~~~P~~~i 105 (142)
...||++.+|.++|
T Consensus 77 Aw~lGi~k~PAVV~ 90 (113)
T TIGR03757 77 AWQLGVTKIPAVVV 90 (113)
T ss_pred HHHcCCccCCEEEE
Confidence 45789999999877
No 451
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=20.93 E-value=94 Score=23.68 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.7
Q ss_pred CCCChhhhhhhHHHHHHHHH
Q psy7943 51 APWCGHCKQLVPEYSKAALQ 70 (142)
Q Consensus 51 ~~~C~~C~~~~~~~~~~~~~ 70 (142)
++.||.|+.+++.+.++.+.
T Consensus 451 ~pacpscQrlhkkilelerq 470 (558)
T PF15358_consen 451 PPACPSCQRLHKKILELERQ 470 (558)
T ss_pred CCCChHHHHHHHHHHHHHHH
Confidence 58999999999988877544
No 452
>KOG4498|consensus
Probab=20.92 E-value=2.8e+02 Score=18.78 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHhhhcCCcEEEEEECCCChhhhhhhHHHHHHHHHHh
Q psy7943 36 QSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLA 72 (142)
Q Consensus 36 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~~~~~~~ 72 (142)
...-+++.-+|...-.+.|--|+.....+.++...++
T Consensus 45 ~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld 81 (197)
T KOG4498|consen 45 TSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLD 81 (197)
T ss_pred HHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHH
Confidence 3344567777777778999999999999999955444
No 453
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=20.80 E-value=87 Score=19.14 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=17.2
Q ss_pred HHHHcCCCCCCEEEEEeCCceEeeCccccc
Q psy7943 91 LAEQYGVRGYPTLKFFKKRSIIEYGEVTSV 120 (142)
Q Consensus 91 ~~~~~~i~~~P~~~i~~~~~~~~~~g~~~~ 120 (142)
-...+|++.+|.++|= +.-+.| |..+.
T Consensus 75 ~Aw~lgi~k~PAVVfD--~~~VVY-G~tDV 101 (114)
T PF07511_consen 75 DAWSLGITKYPAVVFD--DRYVVY-GETDV 101 (114)
T ss_pred HHHHhCccccCEEEEc--CCeEEe-cccHH
Confidence 3557899999999874 333334 44433
No 454
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=20.71 E-value=92 Score=19.87 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=13.9
Q ss_pred HHHHHHcCCCCCCEEE
Q psy7943 89 TALAEQYGVRGYPTLK 104 (142)
Q Consensus 89 ~~~~~~~~i~~~P~~~ 104 (142)
..+.+++++..||.++
T Consensus 121 ddLA~rL~l~HYPvLI 136 (142)
T PF11072_consen 121 DDLARRLGLSHYPVLI 136 (142)
T ss_pred HHHHHHhCCCcccEEe
Confidence 3789999999999885
No 455
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=20.68 E-value=20 Score=15.79 Aligned_cols=9 Identities=22% Similarity=0.807 Sum_probs=5.2
Q ss_pred CCCChhhhh
Q psy7943 51 APWCGHCKQ 59 (142)
Q Consensus 51 ~~~C~~C~~ 59 (142)
+.+|+.|+.
T Consensus 21 ~~~C~rCq~ 29 (30)
T PF06827_consen 21 TYLCPRCQK 29 (30)
T ss_dssp EEE-TTTCC
T ss_pred CeECcCCcC
Confidence 457888864
No 456
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.61 E-value=95 Score=19.84 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=9.0
Q ss_pred CchHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISP 13 (142)
Q Consensus 1 Mk~~~~~~~~~~~ 13 (142)
|+|+.++.++++.
T Consensus 1 M~rf~~i~lL~~A 13 (166)
T COG3495 1 MNRFTSITLLAAA 13 (166)
T ss_pred CchhHHHHHHHHH
Confidence 8888876655554
No 457
>PRK10445 endonuclease VIII; Provisional
Probab=20.53 E-value=30 Score=24.36 Aligned_cols=6 Identities=50% Similarity=1.979 Sum_probs=2.9
Q ss_pred CChhhh
Q psy7943 53 WCGHCK 58 (142)
Q Consensus 53 ~C~~C~ 58 (142)
|||.||
T Consensus 257 ~CP~CQ 262 (263)
T PRK10445 257 WCPGCQ 262 (263)
T ss_pred ECCCCc
Confidence 445454
No 458
>CHL00132 psaF photosystem I subunit III; Validated
Probab=20.47 E-value=1e+02 Score=20.51 Aligned_cols=19 Identities=42% Similarity=0.936 Sum_probs=11.6
Q ss_pred CchHHHHHHHHHHHHhhcc
Q psy7943 1 MRRLSLLFLLISPLVVFAD 19 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~~~~~ 19 (142)
||+++.+++++++...++.
T Consensus 1 mrrl~~l~l~~~l~~~~~p 19 (185)
T CHL00132 1 MKKFNLLFLLLAALLLFNP 19 (185)
T ss_pred ChhHHHHHHHHHHHHhcCC
Confidence 8888776665555544443
No 459
>COG5455 Predicted integral membrane protein [Function unknown]
Probab=20.30 E-value=1e+02 Score=19.28 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=8.6
Q ss_pred CchHHHHHHHHHHHH
Q psy7943 1 MRRLSLLFLLISPLV 15 (142)
Q Consensus 1 Mk~~~~~~~~~~~~~ 15 (142)
||++.+.++...+++
T Consensus 2 mkrlv~~lla~s~~a 16 (129)
T COG5455 2 MKRLVSALLAVSSVA 16 (129)
T ss_pred chhHHHHHHHHHHhh
Confidence 677666555544443
No 460
>TIGR03780 Bac_Flav_CT_N Bacteroides conjugative transposon TraN protein. Members of this family are the TraN protein encoded by transfer region genes of conjugative transposons of Bacteroides. The family is related to conjugative transfer proteins VirB9 and TrbG of Agrobacterium Ti plasmids.
Probab=20.28 E-value=87 Score=22.52 Aligned_cols=14 Identities=7% Similarity=0.356 Sum_probs=7.7
Q ss_pred CchHH-HHHHHHHHH
Q psy7943 1 MRRLS-LLFLLISPL 14 (142)
Q Consensus 1 Mk~~~-~~~~~~~~~ 14 (142)
||+++ +++++++++
T Consensus 1 mk~~~~~~~~~~~~~ 15 (285)
T TIGR03780 1 MKKIFGIMLASLLGV 15 (285)
T ss_pred CcchHHHHHHHHHHH
Confidence 88887 433333333
No 461
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=20.12 E-value=1.1e+02 Score=17.85 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=14.3
Q ss_pred CChhhhhhhHHHHHHHHHHh
Q psy7943 53 WCGHCKQLVPEYSKAALQLA 72 (142)
Q Consensus 53 ~C~~C~~~~~~~~~~~~~~~ 72 (142)
|-|++-..+..+..+.....
T Consensus 59 wEPpsGEiESlLFaLQAaiG 78 (91)
T TIGR01165 59 WEPPSGEIESLLFALQAALG 78 (91)
T ss_pred ccCCcchHHHHHHHHHHHhh
Confidence 55678888888777766654
Done!