RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7943
(142 letters)
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 163 bits (414), Expect = 4e-53
Identities = 46/95 (48%), Positives = 61/95 (64%)
Query: 20 DVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIK 79
+V EE+GV VL NF + + D +L+EFYAPWCGHCKQ PEY K A L + I
Sbjct: 12 EVKEENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIA 71
Query: 80 LAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114
+AK+DAT + LA ++ V GYPT+K KK ++Y
Sbjct: 72 VAKIDATSASMLASKFDVSGYPTIKILKKGQAVDY 106
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 158 bits (401), Expect = 2e-51
Identities = 58/99 (58%), Positives = 73/99 (73%), Gaps = 3/99 (3%)
Query: 19 DDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDI 78
D EED VLVL + NF ++ H ++LVEFYAPWCGHCK L PEY+KAA +L +G +I
Sbjct: 1 DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 79 KLAKVDATQHTALAEQYGVRGYPTLKFFK---KRSIIEY 114
+LAKVDAT+ + LA+QYGVRGYPT+KFF+ S EY
Sbjct: 61 RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEY 99
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 152 bits (385), Expect = 2e-47
Identities = 47/95 (49%), Positives = 61/95 (64%)
Query: 20 DVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIK 79
+V EE+GVLVL NF + + D +L+EFYAPWCGHCKQ PEY K A L I
Sbjct: 10 EVKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIP 69
Query: 80 LAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114
+AK+DAT + LA ++ V GYPT+K KK ++Y
Sbjct: 70 VAKIDATSASVLASRFDVSGYPTIKILKKGQAVDY 104
Score = 124 bits (314), Expect = 9e-37
Identities = 51/99 (51%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 22 TEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLA 81
+ LVLT++NF + D ILVEFYAPWCGHCK+L PEY KAA +L+ I LA
Sbjct: 127 PPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLA 186
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY-GEVTS 119
KVDAT T LA+++ V GYPTLK F+K +Y G
Sbjct: 187 KVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREK 225
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 147 bits (372), Expect = 8e-47
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 10/109 (9%)
Query: 15 VVFADDVTEEDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLAT 73
+ + D V+ LT NF + + LVEFYAPWCGHC++L PE+ KAA L
Sbjct: 7 GAVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK- 65
Query: 74 DGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEY 122
+K+ V+A +H +L QYGV+G+PT+K F + +Y
Sbjct: 66 --DVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGA------NKNKPEDY 106
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 146 bits (369), Expect = 3e-46
Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 3/96 (3%)
Query: 22 TEEDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGH-DIK 79
V+ LT D+F ++ + D +VEFYAPWCGHCK L PE++ AA ++ +K
Sbjct: 4 GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVK 63
Query: 80 LAKVDATQHTALAEQYGVRGYPTLKFFKK-RSIIEY 114
LA VDAT + LA +YG+RG+PT+K F+K S ++Y
Sbjct: 64 LAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDY 99
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 145 bits (367), Expect = 4e-46
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 23 EEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAK 82
V V+T +N++ +E ++EFYAPWC C+ L PE+ A ++ +AK
Sbjct: 5 SSGNVRVITDENWRELLE--GDWMIEFYAPWCPACQNLQPEWESFAEWGE--DLEVNIAK 60
Query: 83 VDATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114
VD T+ L+ ++ + PT+ K Y
Sbjct: 61 VDVTEQPGLSGRFIINALPTIYHCKDGEFRRY 92
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 143 bits (363), Expect = 1e-45
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 23 EEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAK 82
VL LT++NF +I ++FYAPWCGHCK L P + + + + +K+A+
Sbjct: 3 LGSTVLALTENNFDDTI-AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAE 61
Query: 83 VDATQHTALAEQYGVRGYPTLKFFKK-RSIIEY 114
VD T + +Y VRGYPTL F+ + + E+
Sbjct: 62 VDCTAERNICSKYSVRGYPTLLLFRGGKKVSEH 94
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 144 bits (364), Expect = 5e-42
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 5/97 (5%)
Query: 21 VTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
E+ V+ L D+F I+ HD +L EF+APWCGHCK + PEY KAA L +I L
Sbjct: 10 APEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLV--EKNITL 67
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFFK---KRSIIEY 114
A++D T++ L ++ + G+P+LK FK + I+Y
Sbjct: 68 AQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDY 104
Score = 109 bits (274), Expect = 3e-29
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 22 TEEDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
++ V L N + + +LV +YAPWCGHCK+L P Y + A A D+ +
Sbjct: 355 NQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLI 414
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFFK---KRSIIEY 114
AK+D T++ + GYPT+ + K + Y
Sbjct: 415 AKLDHTEND--VRGVVIEGYPTIVLYPGGKKSESVVY 449
Score = 47.5 bits (112), Expect = 2e-07
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 5/115 (4%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
+ F +E + FY ++ P +++ A + + +DA
Sbjct: 223 FGEIDGSVFAQYVESGLPLGYLFY-NDEEELEEYKPLFTELAKKNR---GLMNFVSIDAR 278
Query: 87 QHTALAEQYGVRGY-PTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRAVTSVIIRK 140
+ A ++ P ++YG E + K + S I
Sbjct: 279 KFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIES 333
Score = 28.7 bits (63), Expect = 0.68
Identities = 11/110 (10%), Positives = 32/110 (29%), Gaps = 9/110 (8%)
Query: 14 LVVFADDVTEEDGVLVLTQDNFQSSIEKHDHI-------LVEFYAPWCGHCKQLVPEYSK 66
+V F ++ +V + ++ + +F A + + +Y
Sbjct: 113 IVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDF 172
Query: 67 AALQLATD--GHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114
+ + A D I L ++ + + + + + Y
Sbjct: 173 VSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPY 222
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 141 bits (357), Expect = 8e-42
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 23 EEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLA---TDGHDIK 79
+ L +N + D LV FYA WC + L P + +A+ + + + +
Sbjct: 3 LGSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVV 62
Query: 80 LAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVEYCYQR 126
A+VD QH+ +A++Y + YPTLK F+ G + EY QR
Sbjct: 63 FARVDCDQHSDIAQRYRISKYPTLKLFRN------GMMMKREYRGQR 103
Score = 29.2 bits (65), Expect = 0.43
Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPW-CGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
V +T +N + E+ L+ F+ + E ++ + + I D
Sbjct: 221 VREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLIS---EKGTINFLHADC 277
Query: 86 TQHTALAEQYGVR--GYPTLKFFKKRSIIEYGE 116
+ P + R + +G+
Sbjct: 278 DKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGD 310
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 137 bits (345), Expect = 6e-41
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 22 TEEDGVLVLTQDNFQSSIEKHDHI-LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
+ + LT +F +I ++ LVEFYAPWCGHCK+L + KAA +L +
Sbjct: 14 DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVV-QVAA 72
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFFKK 108
D ++ AL +Y V G+PTL F+
Sbjct: 73 VNCDLNKNKALCAKYDVNGFPTLMVFRP 100
Score = 37.8 bits (87), Expect = 5e-04
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 22 TEEDGVLVLTQDNFQS----SIEKHDHILVEFYAPWCGHCKQLV---PEYSKAALQLATD 74
+ + V++ ++ + S SI +FY+ KQL P Y K
Sbjct: 161 SPKLSVVLFSKQDKISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYL 220
Query: 75 GHDIKLAKVDATQHTALA 92
+ + + + +
Sbjct: 221 Q-KVIPEQRQSDKSKLVV 237
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 135 bits (342), Expect = 6e-41
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 22 TEEDGVLVLTQDNFQSSIEK-HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
+ D + +L D + ++ VEF+A WCGHC P + A + + L
Sbjct: 9 SPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYL 68
Query: 81 AKVDATQ--HTALAEQYGVRGYPTLKFFKKRS 110
A +D + ++A+ + + G+PT++FF +
Sbjct: 69 AALDCAEETNSAVCRDFNIPGFPTVRFFXAFT 100
Score = 65.8 bits (160), Expect = 4e-14
Identities = 7/71 (9%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 38 SIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGV 97
+ +++ + F +++ + S+ + + +V T + ++GV
Sbjct: 153 ARNNEEYLALIFEXGGSYLAREVALDLSQHK--------GVAVRRVLNT-EANVVRKFGV 203
Query: 98 RGYPTLKFFKK 108
+P+ +
Sbjct: 204 TDFPSCYLLFR 214
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 125 bits (315), Expect = 3e-38
Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 18 ADDVTEEDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLA--TD 74
A+D V+ LT + F S + + + V +Y PW H + + ++ + +
Sbjct: 8 ANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRN 67
Query: 75 GHDIKLAKVDATQHTALAEQYGVRGYPTLKFFK---KRSIIEY 114
A++D ++ + E+ V G+PT++++ K+ EY
Sbjct: 68 HLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEY 110
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 133 bits (334), Expect = 1e-37
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 22 TEEDGVLVLTQDNFQSSIEK-HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
+ D + +L D+ + ++ VEF+A WCGH P + + A + + L
Sbjct: 9 SSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNL 68
Query: 81 AKVDATQ--HTALAEQYGVRGYPTLKFFKK 108
A +D + ++A+ ++ + G+PT++FF+
Sbjct: 69 AVLDCAEETNSAVCREFNIAGFPTVRFFQA 98
Score = 36.1 bits (82), Expect = 0.002
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 35 FQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQ 94
F + + ++ E + G L H + + +V + L +
Sbjct: 152 FTRNKADYLALVFEREDSYLGREVTLDLSQY----------HAVAVRRVL-NTESDLVNK 200
Query: 95 YGVRGYPTLKFFKK 108
+GV +P+ +
Sbjct: 201 FGVTDFPSCYLLLR 214
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 124 bits (312), Expect = 1e-37
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 22 TEEDGVLVLTQDNFQSSIEKHD-HILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
V V+ F + + +L+EFYAPWCGHCKQL P Y+ + D+ +
Sbjct: 4 GSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYK-GQKDLVI 62
Query: 81 AKVDATQHTALAEQYGVRGYPTLKFFK---KRSIIEY 114
AK+DAT + +QY V G+PT+ F K++ I++
Sbjct: 63 AKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKF 99
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 129 bits (325), Expect = 2e-37
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 23 EEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQL-----ATDGHD 77
+D V+ LT+ NF+ ++K+D +L +Y K ++ + L + D
Sbjct: 9 GKDRVVSLTEKNFKQVLKKYD-VLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKD 67
Query: 78 IKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEVTSVE 121
I VDA + LA++ G +L K IE+ + +
Sbjct: 68 IGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDGEFAAD 111
Score = 37.7 bits (87), Expect = 5e-04
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 14 LVVFADDVTEEDGVLVLTQDNFQS-SIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLA 72
LV F D+ E+ ++ ++ Q+ + L+ F+ + + +AA
Sbjct: 113 LVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFK---SEESEYYKAFEEAAEHFQ 169
Query: 73 TDGHDIKLAKVDATQHTALAEQYGVRGYPTLKF--FKKRSIIEYGEVTSVE 121
K AT +A++ ++ + F I + + E
Sbjct: 170 PY------IKFFATFDKGVAKKLSLKMNEVDFYEPFMDEPIAIPDKPYTEE 214
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 122 bits (308), Expect = 3e-37
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 25 DGVLVLTQDNFQSSIEK-HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
+ LT F + + H +V+FYAPWCG C+ PE+ A + ++ KV
Sbjct: 3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK---GKVRAGKV 59
Query: 84 DATQHTALAEQYGVRGYPTLKFFKK 108
D + ++ G++ YP++K ++
Sbjct: 60 DCQAYPQTCQKAGIKAYPSVKLYQY 84
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 128 bits (324), Expect = 4e-37
Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 23 EEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQ------LVPEYSKAALQLATDGH 76
D V+ + N+++ +K++ + + ++ P AA L +
Sbjct: 11 GVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVL--EDK 68
Query: 77 DIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114
+ VD+ + A+A++ G+ ++ FK+ +IEY
Sbjct: 69 GVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEY 106
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 123 bits (310), Expect = 1e-34
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 21 VTEEDGVLVLTQDNFQSSIEKHDHI--LVEFYAPWCGHCKQLVPEYSKAALQLATDGHD- 77
+ V+ L+ D+F +V FY CG C++ +SK A L +
Sbjct: 19 FHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKD 78
Query: 78 ----IKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGE 116
A V+ L +Y + P L FF R E
Sbjct: 79 ALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNE 121
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 123 bits (309), Expect = 3e-34
Identities = 44/85 (51%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Query: 27 VLVLTQDNFQSSI---EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
VL LT DNF+S I +LVEF+APWCGH K+L PEY AA +L + LAKV
Sbjct: 3 VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK---GIVPLAKV 59
Query: 84 DATQHTALAEQYGVRGYPTLKFFKK 108
D T +T +YGV GYPTLK F+
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRD 84
Score = 96.9 bits (240), Expect = 1e-24
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 6/91 (6%)
Query: 28 LVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
V+ +NF + ++ +L+EFYAPWCGHCK L P+Y + +L+ D +I +AK+DAT
Sbjct: 355 KVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDP-NIVIAKMDAT 413
Query: 87 QHTALAEQYGVRGYPTLKFFK---KRSIIEY 114
+ + Y VRG+PT+ F K + +Y
Sbjct: 414 AN-DVPSPYEVRGFPTIYFSPANKKLNPKKY 443
Score = 32.5 bits (73), Expect = 0.033
Identities = 12/98 (12%), Positives = 27/98 (27%), Gaps = 10/98 (10%)
Query: 25 DGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATD----GHDIKL 80
+T+DN K +L+ +Y + + + +A GH +
Sbjct: 218 GICPHMTEDNKDLIQGKD--LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNF 275
Query: 81 AKVDATQHTALAEQYGVR----GYPTLKFFKKRSIIEY 114
A + +G+ P + +
Sbjct: 276 AVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFV 313
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 111 bits (279), Expect = 7e-33
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 22 TEEDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATD--GHDI 78
E V V+ N+ + + +L+EFYAPWCGHCK L P+Y + A +
Sbjct: 4 GSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRV 63
Query: 79 KLAKVDATQHTALAEQYGVRGYPTLKFF---KKRSIIEY 114
+AKVDAT + ++G+PT+K + K + Y
Sbjct: 64 VIAKVDATANDVP---DEIQGFPTIKLYPAGAKGQPVTY 99
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 112 bits (281), Expect = 7e-32
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 21 VTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
+ G L L F I K +LV+F + KQ E+ + A A+ D+ +
Sbjct: 1 MVHTKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSD-DLLV 57
Query: 81 AKVDAT-----QHTALAEQYGV--RGYPTLKFFK---KRSIIEY 114
A+V + + L+E+Y + YP F+ + + Y
Sbjct: 58 AEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPY 101
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 114 bits (287), Expect = 1e-30
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 14 LVVFADDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLAT 73
++ FA + V L NF +S ++ LV+F+APW + L+PE KA+ L
Sbjct: 430 ILAFAKESVNSH-VTTLGPQNFPASDKEP--WLVDFFAPWSPPSRALLPELRKASTLLY- 485
Query: 74 DGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114
+K+ +D T H L Y ++ YPT F + SI EY
Sbjct: 486 --GQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEY 524
Score = 108 bits (270), Expect = 1e-28
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 14 LVVFADDVTEEDGVLVLTQDNFQSSIEKH-DHILVEFYAPWCGHCKQLVPEYSKAALQLA 72
L + + + LT F + + H +V+FYAPW G + PE+ A +
Sbjct: 647 LRSWGLGFLPQA-SIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIK 705
Query: 73 TDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRS 110
++ KVD + ++ G++ YP++K ++
Sbjct: 706 ---GKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYER 740
Score = 104 bits (260), Expect = 4e-27
Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 17 FADDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGH 76
++ ++ L + F +++ + V FY+P H L P + + A ++
Sbjct: 108 DFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDG--- 164
Query: 77 DIKLAKVDATQHTALAEQYGVRGYPTLKFFKK-RSIIEY 114
+++ V+ L GV YP+L F+ + ++Y
Sbjct: 165 LLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKY 203
Score = 97.5 bits (242), Expect = 1e-24
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 14 LVVFADDVTEEDGVLVLTQDNFQSSIEKHDH---ILVEFYAPWCGHCKQLVPEYSKAALQ 70
++ F +D+ V+ LT F +++ H +V+FY+PW + L+PE+ + A
Sbjct: 533 ILEFIEDLRNPS-VVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMART 591
Query: 71 LATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114
L I + VD Q+ + Q V+ YP ++F+ ++S Y
Sbjct: 592 LT---GLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAY 632
Score = 85.6 bits (211), Expect = 2e-20
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 2/103 (1%)
Query: 14 LVVFADDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLAT 73
LV FA V L+ NF ++IE V + +C + + ++ L
Sbjct: 212 LVAFAMQHVR-STVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGML 270
Query: 74 DGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGE 116
DG + + VD +L + T F ++ + +
Sbjct: 271 DG-LVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREK 312
Score = 57.1 bits (137), Expect = 1e-10
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 16 VFADDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDG 75
++ + + +L+ + + + H LV F+ + + PE K L +
Sbjct: 326 IYMEIIHNLPDFELLSANQLEDRLAHH-RWLVFFH--FGKNENANDPELKKLKTLLKNEH 382
Query: 76 HDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114
I++ + D + + V P+L FK + EY
Sbjct: 383 --IQVVRFDCSSAPGICSDLYVF-QPSLAVFKGQGTKEY 418
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 103 bits (259), Expect = 1e-27
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 23 EEDGVLVLTQDNFQSSI-EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLA 81
++ V VL NF+ ++ ++ VEFYAPWCGHCKQL P + K D +I +A
Sbjct: 247 DKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYK-DHENIVIA 305
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFK---KRSIIEY 114
K+D+T + E V +PTLKFF R++I+Y
Sbjct: 306 KMDSTAN--EVEAVKVHSFPTLKFFPASADRTVIDY 339
Score = 47.8 bits (113), Expect = 2e-07
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWC-GHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
V+ T+ + + P + + AA D
Sbjct: 119 VIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK-GKILFIFIDSDH 177
Query: 86 TQHTALAEQYGVRGY--PTLKFFKKRSIIEYGEVTSVEY 122
T + + E +G++ P ++ + + S E
Sbjct: 178 TDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEEL 216
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 86.3 bits (214), Expect = 4e-23
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
+ +T + + E +V F+ C HCK + K + ++ VD+
Sbjct: 4 IRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDK----FGARAPQVAISSVDSE 59
Query: 87 QHTALAEQYGVRGYPTLKFFK 107
L ++ G PTL F +
Sbjct: 60 ARPELMKELGFERVPTLVFIR 80
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 86.7 bits (215), Expect = 6e-23
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 25 DGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVD 84
V+ + F + LV+F+APWCG C+ + P + A A +K+ KV+
Sbjct: 33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG---RLKVVKVN 89
Query: 85 ATQHTALAEQYGVRGYPTLKFFK 107
+H LA +YGVR PTL F+
Sbjct: 90 VDEHPGLAARYGVRSVPTLVLFR 112
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 84.8 bits (210), Expect = 5e-22
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
G + + E+ D +LV+F+APWCG C+Q+ P++ AA LA ++LAK+
Sbjct: 46 TGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG---QVRLAKI 102
Query: 84 DATQHTALAEQYGVRGYPTLKFFKK 108
D H A+A ++ ++G P F K
Sbjct: 103 DTQAHPAVAGRHRIQGIPAFILFHK 127
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 84.4 bits (209), Expect = 6e-22
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
V+ T + ++ ++++F+APWCG C+ P +++ A + A ++ KV+
Sbjct: 40 VINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG---KVRFVKVNTE 96
Query: 87 QHTALAEQYGVRGYPTLKFFKK 108
AL+ ++ +R PT+ ++
Sbjct: 97 AEPALSTRFRIRSIPTIMLYRN 118
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 80.4 bits (199), Expect = 7e-21
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
V+ L NF S + H+ +V+F+A WC C L P +LA D + K+++
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIE----ELAEDYPQVGFGKLNSD 56
Query: 87 QHTALAEQYGVRGYPTLKFFK 107
++ +A +YGV PT+ FFK
Sbjct: 57 ENPDIAARYGVMSLPTVIFFK 77
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 80.0 bits (198), Expect = 9e-21
Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 31 TQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA 90
T + + IE+ +L+ CG C ++ + + + + + ++ ++
Sbjct: 7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNY----VLENYNYVEKIEILLQDMQE 62
Query: 91 LAEQYGVRGYPTLKFFKK 108
+A +Y V PT+ F
Sbjct: 63 IAGRYAVFTGPTVLLFYN 80
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 81.0 bits (200), Expect = 1e-20
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 24 EDGVLVLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLA 81
G + I++ IL+ ++ + D ++A
Sbjct: 16 TRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF--PQFDWQVA 73
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFK 107
D Q A+ +++ VR +P F
Sbjct: 74 VADLEQSEAIGDRFNVRRFPATLVFT 99
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 79.8 bits (197), Expect = 3e-20
Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 20 DVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAA----LQLATDG 75
V E+ ++ +T + F+ ++ ++ Y+ C HC + P+ +A+ + +
Sbjct: 11 AVLEDGRLIYITPEEFRQLLQGD--AILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFI 68
Query: 76 HDIKLAKVDATQHTALAEQYGVRGYPTLKFFK 107
+ + + + + GV G PTL F+K
Sbjct: 69 WGSLIGERELSAARLEMNKAGVEGTPTLVFYK 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 82.2 bits (203), Expect = 5e-20
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 20 DVTEEDGVLVLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHD 77
+ ++ + + N Q +E+ +L F++ HC QL P A Q G
Sbjct: 2 SHMSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYN--GQ- 58
Query: 78 IKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108
LAK+D +A Q+G+R PT+ F+
Sbjct: 59 FILAKLDCDAEQMIAAQFGLRAIPTVYLFQN 89
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 78.2 bits (193), Expect = 7e-20
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 28 LVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
T + + I++ +LV+F+A WCG C++L +A D+ KVD
Sbjct: 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILP----SIAEANKDVTFIKVDVD 63
Query: 87 QHTALAEQYGVRGYPTLKFFKK 108
++ A+ YGV P L F KK
Sbjct: 64 KNGNAADAYGVSSIPALFFVKK 85
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 78.7 bits (194), Expect = 8e-20
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 24 EDGVLVLTQDNFQSSIEKHDHI--LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLA 81
+ +E+ + +VEF+A W C+ P Y+ +L+ G +
Sbjct: 6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTG--LNFG 63
Query: 82 KVDATQHTALAEQYGV------RGYPTLKFFK 107
KVD ++T ++ +Y V + PTL F+
Sbjct: 64 KVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQ 95
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 80.9 bits (199), Expect = 1e-19
Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 26 GVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
G + L + +F+ ++E+ + +V+F K ++ + D+ +A V
Sbjct: 17 GCVDLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGV 74
Query: 86 TQH-----TALAEQYGV--RGYPTLKFFKKRSIIEYGEVTSVEYCYQRNWHKRAV 133
+ AL ++Y V + +P++ FK V+ + +
Sbjct: 75 KDYGELENKALGDRYKVDDKNFPSIFLFKG------NADEYVQLPSHVDVTLDNL 123
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 77.5 bits (191), Expect = 2e-19
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
++ + +E ++V FY+P C +CK + P + + A + + ++
Sbjct: 6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRI 62
Query: 84 DATQHTALAEQYGVRGYPTLKFFK 107
+ + AE+YGV+G PT KFF
Sbjct: 63 NIATNPWTAEKYGVQGTPTFKFFC 86
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 77.0 bits (190), Expect = 3e-19
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 27 VLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
L N + + + I++ F+A WC C E K G I L KVD
Sbjct: 26 RLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYY---GKRIYLLKVDL 82
Query: 86 TQHTALAEQYGVRGYPTLKFFK 107
++ +LA ++ V+ PT+ K
Sbjct: 83 DKNESLARKFSVKSLPTIILLK 104
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 76.2 bits (188), Expect = 3e-19
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 29 VLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
T F S+I + ++V+FYA WCG CK + P K + K+D +
Sbjct: 11 FKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEK----FSEQYPQADFYKLDVDEL 66
Query: 89 TALAEQYGVRGYPTLKFFKKRSIIE 113
+A++ V PTL FK +
Sbjct: 67 GDVAQKNEVSAMPTLLLFKNGKEVA 91
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 76.2 bits (188), Expect = 4e-19
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 29 VLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
+ F++ I+++D ++++FYA WCG CK + P + +L D++ K D +
Sbjct: 17 LTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLT----KLIQAYPDVRFVKCDVDES 72
Query: 89 TALAEQYGVRGYPTLKFFKKRSIIE 113
+A++ V PT K +I
Sbjct: 73 PDIAKECEVTAMPTFVLGKDGQLIG 97
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 75.8 bits (187), Expect = 5e-19
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 29 VLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
V +Q F S I +++ ++V+F+A WCG CK++ P Y + + + KVD +
Sbjct: 13 VTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYE----ECSKTYTKMVFIKVDVDEV 68
Query: 89 TALAEQYGVRGYPTLKFFKKRSIIE 113
+ + E+ + PT K +K S ++
Sbjct: 69 SEVTEKENITSMPTFKVYKNGSSVD 93
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 76.3 bits (188), Expect = 5e-19
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 22 TEEDGVLVLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIK 79
V + +D F ++ ++++ + WCG CK + P+Y K LA + D+
Sbjct: 15 AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEK----LAEEYLDVI 70
Query: 80 LAKVDATQHT-ALAEQYGVRGYPTLKFFKKRSIIE 113
K+D Q LA++ G+R PT K K+ S++
Sbjct: 71 FLKLDCNQENKTLAKELGIRVVPTFKILKENSVVG 105
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 75.7 bits (187), Expect = 5e-19
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAAL-QLATD-GHDIKLA 81
D ++ LT D+F + + K D ILV+F+A WCG CK + P L ++A + + +A
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP-----ILDEIADEYQGKLTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFK 107
K++ Q+ A +YG+RG PTL FK
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFK 82
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 75.8 bits (187), Expect = 5e-19
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 24 EDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHD-IKLAK 82
ED LVLT++NF I + +LV+ +A WC C P Y ++A +
Sbjct: 3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYK----KVAEKYKGKAVFGR 58
Query: 83 VDATQHTALAEQYGVRGYPTLKFFK 107
++ ++ +A++Y V PT F
Sbjct: 59 LNVDENQKIADKYSVLNIPTTLIFV 83
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 75.8 bits (187), Expect = 5e-19
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 27 VLVLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVD 84
V + +D F ++ ++++ + WCG K + P+Y K LA + D+ K+D
Sbjct: 7 VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEK----LAEEYLDVIFLKLD 62
Query: 85 ATQHT-ALAEQYGVRGYPTLKFFKKRSIIE 113
Q LA++ G+R PT K K+ S++
Sbjct: 63 CNQENKTLAKELGIRVVPTFKILKENSVVG 92
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 75.4 bits (186), Expect = 6e-19
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 28 LVLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
++ T + + I ++ I+V+F+A WCG C+ + P+ LA + +++ AKVD
Sbjct: 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVE----ALAKEIPEVEFAKVDV 58
Query: 86 TQHTALAEQYGVRGYPTLKFFKKRSIIE 113
Q+ A +Y V PT F K ++
Sbjct: 59 DQNEEAAAKYSVTAMPTFVFIKDGKEVD 86
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 75.9 bits (187), Expect = 6e-19
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 29 VLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
V + + F++ + + + F A WCG CK + ++A + +K AKVDA +
Sbjct: 24 VYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPME----KIAYEFPTVKFAKVDADNN 79
Query: 89 TALAEQYGVRGYPTLKFFKKRSIIE 113
+ + + V PT + ++
Sbjct: 80 SEIVSKCRVLQLPTFIIARSGKMLG 104
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 75.9 bits (187), Expect = 7e-19
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 29 VLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
+ + D F+ ++++F+A WCG CK + P + K + A G + KVD +
Sbjct: 20 ISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPA--GDKVGFYKVDVDEQ 77
Query: 89 TALAEQYGVRGYPTLKFFKKRSIIE 113
+ +A++ G+R PT FFK I+
Sbjct: 78 SQIAQEVGIRAMPTFVFFKNGQKID 102
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 75.5 bits (186), Expect = 8e-19
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 29 VLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
+ + +S +E+H + ++V+F+A WCG CK + P + + + + +D KVD
Sbjct: 18 LKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEK-----YDAIFVKVDVD 72
Query: 87 QHTALAEQYGVRGYPTLKFFKKRSIIE 113
+ A +Y + PT K +
Sbjct: 73 KLEETARKYNISAMPTFIAIKNGEKVG 99
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 75.4 bits (186), Expect = 8e-19
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAAL-QLATD-GHDIKLA 81
GV+ +T F+S + K + +LV F+A WCG C+ + P + A +K+
Sbjct: 7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSP-----LINLAANTYSDRLKVV 61
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFK 107
K++ + ++Y V G P L+ K
Sbjct: 62 KLEIDPNPTTVKKYKVEGVPALRLVK 87
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 75.1 bits (185), Expect = 1e-18
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 29 VLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQ 87
+ +FQ + + ++V+F+A WCG CK L P K + + +AKVD
Sbjct: 17 IQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDD 73
Query: 88 HTALAEQYGVRGYPTLKFFK 107
HT LA +Y V PT+ K
Sbjct: 74 HTDLAIEYEVSAVPTVLAMK 93
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 75.1 bits (185), Expect = 1e-18
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 22 TEEDGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAAL-QLATD-GHDI 78
+E+ + +T +F + + + +LV+F+A WCG CK + P L ++AT+ D+
Sbjct: 9 SEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAP-----VLEEIATERATDL 63
Query: 79 KLAKVDATQHTALAEQYGVRGYPTLKFFK 107
+AK+D + A + V PTL FK
Sbjct: 64 TVAKLDVDTNPETARNFQVVSIPTLILFK 92
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 75.1 bits (185), Expect = 1e-18
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAAL-QLATD-GHDIKLA 81
D ++ LT D+F + + K D ILV+F+A WCG K + P L ++A + + +A
Sbjct: 22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAP-----ILDEIADEYQGKLTVA 76
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFK 107
K++ Q+ A +YG+RG PTL FK
Sbjct: 77 KLNIDQNPGTAPKYGIRGIPTLLLFK 102
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 74.3 bits (183), Expect = 2e-18
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 27 VLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAAL-QLATDGHD-IKLAKV 83
+ L + F+ I LV F C C+++ P L +L + + V
Sbjct: 6 LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTP-----VLEELRLNYEESFGFYYV 60
Query: 84 DATQHTALAEQYGVRGYPTLKFFK 107
D + L +++ ++G P + +FK
Sbjct: 61 DVEEEKTLFQRFSLKGVPQILYFK 84
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 74.3 bits (183), Expect = 2e-18
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAAL-QLATD-GHDIKLA 81
+ +T D+F+ + K+D +LV+F+A WCG C+Q+ P +L +A + G I++
Sbjct: 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAP-----SLEAIAAEYGDKIEIV 59
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFK 107
K++ ++ A +YGV PTL ++
Sbjct: 60 KLNIDENPGTAAKYGVMSIPTLNVYQ 85
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 75.3 bits (185), Expect = 2e-18
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 14 LVVFADDVTEEDGVLVLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQL 71
+ A + V + F+ + ++V F+APW C Q+ + +L
Sbjct: 2 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMA----EL 57
Query: 72 ATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIE 113
A + + K++A ++E+Y + PT FFK I+
Sbjct: 58 AKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKID 99
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 73.4 bits (181), Expect = 3e-18
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 27 VLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHD-IKLAKVD 84
V + +++ + + + ++V+F+APWCG CK + P +LA + I + K++
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAP----VIDELAKEYSGKIAVYKLN 57
Query: 85 ATQHTALAEQYGVRGYPTLKFFK 107
+ +A QY +R PT+ FFK
Sbjct: 58 TDEAPGIATQYNIRSIPTVLFFK 80
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 73.5 bits (181), Expect = 3e-18
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAAL-QLATD-GHDIKLA 81
+ L ++ +F + K +LV+F+A WCG CK + P AL ++ + + +A
Sbjct: 2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGP-----ALGEIGKEFAGKVTVA 56
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFK 107
KV+ + Y VR PTL +
Sbjct: 57 KVNIDDNPETPNAYQVRSIPTLMLVR 82
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 73.5 bits (181), Expect = 3e-18
Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 29 VLTQDNFQSSIEKHDH---ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
+ Q+ F I++ F+ W CK L + + + + ++ +DA
Sbjct: 5 INDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPS--NSNVSFLSIDA 62
Query: 86 TQHTALAEQYGVRGYPTLKFFKKRSIIE 113
+++ ++E + + P K +I++
Sbjct: 63 DENSEISELFEISAVPYFIIIHKGTILK 90
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 73.5 bits (181), Expect = 3e-18
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAAL-QLATDGHD-IKLAKVD 84
+ +T NF ++ +H +LV+F+A WC C+ + P L ++A + + +AK+D
Sbjct: 3 PIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAP-----ILEEIAKEYEGKLLVAKLD 57
Query: 85 ATQHTALAEQYGVRGYPTLKFFK 107
++ A +Y V PT+ FK
Sbjct: 58 VDENPKTAMRYRVMSIPTVILFK 80
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 73.1 bits (180), Expect = 4e-18
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 27 VLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAAL-QLATD-GHDIKLAKV 83
V+ +T +NF+ + K D +LV+F+APWCG C+ + P + +LA + +K+ KV
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAP-----IIEELAKEYEGKVKVVKV 57
Query: 84 DATQHTALAEQYGVRGYPTLKFFK 107
+ ++ A QYG+R PTL FK
Sbjct: 58 NVDENPNTAAQYGIRSIPTLLLFK 81
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 73.1 bits (180), Expect = 4e-18
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 29 VLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
V + +FQ + +V+F CG C ++ P +S ++ +VD
Sbjct: 6 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFS----SMSNKYPQAVFLEVDVH 61
Query: 87 QHTALAEQYGVRGYPTLKFFKKRSIIE 113
Q A + PT +FF+ + I+
Sbjct: 62 QCQGTAATNNISATPTFQFFRNKVRID 88
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 73.1 bits (180), Expect = 5e-18
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 27 VLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAAL-QLATD-GHDIKLAKV 83
+ D F++ + + +LV+F+APWCG C+ + P + ++A + +K K+
Sbjct: 3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAP-----VVDEIAGEYKDKLKCVKL 57
Query: 84 DATQHTALAEQYGVRGYPTLKFFK 107
+ + +A +YG+R PT+ FK
Sbjct: 58 NTDESPNVASEYGIRSIPTIMVFK 81
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 73.6 bits (181), Expect = 5e-18
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 28 LVLTQDNFQSSIEK----HDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
+ + +F ++++ + V+ + WCG CK+L K +L K+
Sbjct: 9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKM 68
Query: 84 DA--TQHTALAEQYGVRGYPTLKFFKK 108
D + L ++YGV YPTL F
Sbjct: 69 DMEKGEGVELRKKYGVHAYPTLLFINS 95
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 73.3 bits (180), Expect = 6e-18
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++ F C +C ++ E S + + +I A+++ ++ LA +Y PT
Sbjct: 29 TIIMFKTDTCPYCVEMQKELSYVSKERE-GKFNIYYARLEEEKNIDLAYKYDANIVPTTV 87
Query: 105 FFKK 108
F K
Sbjct: 88 FLDK 91
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 72.3 bits (178), Expect = 9e-18
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAAL-QLATD-GHDIKLAKVD 84
+ LT NFQ +I+ +LV+F+A WCG C+ + P L + A + +AK++
Sbjct: 2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAP-----VLEEFAEAHADKVTVAKLN 56
Query: 85 ATQHTALAEQYGVRGYPTLKFFK 107
++ Q+G+ PTL FK
Sbjct: 57 VDENPETTSQFGIMSIPTLILFK 79
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 75.1 bits (184), Expect = 1e-17
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAA--LQLATDGHDIKLAKVDATQHT 89
++ Q ++ I + A C C+ + + A IKL H
Sbjct: 12 KELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHK 71
Query: 90 ALAEQYGVRGYPTLKFFKK 108
E+YGV PT+
Sbjct: 72 EETEKYGVDRVPTIVIEGD 90
Score = 64.3 bits (156), Expect = 1e-13
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGY 100
+ F CG+C A A I +DA+++ LAEQ+ V G
Sbjct: 135 DIPIEIWVFVTTSCGYCPSAAV----MAWDFALANDYITSKVIDASENQDLAEQFQVVGV 190
Query: 101 PTLKFFKK 108
P + K
Sbjct: 191 PKIVINKG 198
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 72.0 bits (177), Expect = 1e-17
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAAL-QLATD-GHDIKLAKVD 84
++ +T +F S +E LV+F+A CG CK + P L +LA D + K+D
Sbjct: 5 IVKVTDADFDSKVESGV-QLVDFWATACGPCKMIAP-----VLEELAADYEGKADILKLD 58
Query: 85 ATQHTALAEQYGVRGYPTLKFFK 107
++ + A +Y V PTL FK
Sbjct: 59 VDENPSTAAKYEVMSIPTLIVFK 81
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 72.0 bits (177), Expect = 1e-17
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 31 TQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA 90
+++F+ I+V+F A WC CK + P ++ +LA ++ KVD + A
Sbjct: 15 WKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFA----ELAKKFPNVTFLKVDVDELKA 70
Query: 91 LAEQYGVRGYPTLKFFKKRSIIE 113
+AE++ V PT F K +++
Sbjct: 71 VAEEWNVEAMPTFIFLKDGKLVD 93
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 74.9 bits (184), Expect = 1e-17
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCGHCKQLVPEYSKAAL-QLATD-GHDIKLA 81
D ++ LT D+F + + K D ILV+F+A WCG CK + P L ++A + + +A
Sbjct: 12 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP-----ILDEIADEYQGKLTVA 66
Query: 82 KVDATQHTALAEQYGVRGYPTLKFFK 107
K++ Q+ A +YG+RG PTL FK
Sbjct: 67 KLNIDQNPGTAPKYGIRGIPTLLLFK 92
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 72.1 bits (177), Expect = 2e-17
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 29 VLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
+ T D ++ + ++++ YA WC CK+ Q+ D L + + T
Sbjct: 16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDP-QVQKALADTVLLQANVT 74
Query: 87 ----QHTALAEQYGVRGYPTLKFFKK 108
Q AL + V G PT+ FF
Sbjct: 75 ANDAQDVALLKHLNVLGLPTILFFDG 100
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 71.6 bits (176), Expect = 2e-17
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 27 VLVLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVD 84
+ ++ FQ +++ ++V+F A WCG K + P + L+ ++ +VD
Sbjct: 14 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFLEVD 69
Query: 85 ATQHTALAEQYGVRGYPTLKFFKKRSIIE 113
+A + V+ PT +FFKK +
Sbjct: 70 VDDCQDVASECEVKSMPTFQFFKKGQKVG 98
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 70.4 bits (173), Expect = 4e-17
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATD-GHDIKLAKVDATQHTALAEQYGVRGYPTL 103
+ F +P C HC ++A + +++ ++ ++ A +YG+ PT+
Sbjct: 5 KIELFTSPMCPHCPAAKR----VVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTI 60
Query: 104 KFFKKRSII 112
I
Sbjct: 61 VINGDVEFI 69
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 70.8 bits (174), Expect = 4e-17
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 29 VLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
+ ++ FQ +++ ++V+F A WCG CK + P + L+ ++ +VD
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVD 60
Query: 87 QHTALAEQYGVRGYPTLKFFKKRSIIE 113
+A + V+ PT +FFKK +
Sbjct: 61 DCQDVASESEVKSMPTFQFFKKGQKVG 87
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 71.3 bits (175), Expect = 4e-17
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 18 ADDVTEEDG--VLVLTQDNFQSSIEKHDH----ILVEFYAPWCGHCKQLVPEYSKAALQL 71
+ + E+G + +D F + + K ++++F A WCG C+ + P ++ +
Sbjct: 6 EEGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFA----EY 61
Query: 72 ATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIE 113
A KVD + +AE+Y V PT F K + +
Sbjct: 62 AKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEAD 103
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 71.7 bits (176), Expect = 4e-17
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 25 DGVLVLTQDNFQSSIEKHDH------------ILVEFYAPWCGHCKQLVPEYSKAAL-QL 71
V+ LT+ F + + + +V+FYA WCG CK + P L +L
Sbjct: 9 GKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAP-----ILDEL 63
Query: 72 ATD-GHDIKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108
A + I + KVD + LA +G+R P++ F
Sbjct: 64 AKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPM 101
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 71.3 bits (175), Expect = 5e-17
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 29 VLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
+ + + I+++F A WC C ++ + + + L +D
Sbjct: 25 LKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNY-----YYVTLVDIDVD 79
Query: 87 QHTALAEQYGVRGYPTLKFFKK 108
H L +Q+ ++ PT +F+
Sbjct: 80 IHPKLNDQHNIKALPTFEFYFN 101
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 70.4 bits (173), Expect = 6e-17
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 29 VLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT 86
V + + + K ++++F+A WCG CK + P+ + + Q A ++ + KVD
Sbjct: 5 VKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA---DNVVVLKVDVD 61
Query: 87 QHTALAEQYGVRGYPTLKFFKKRSIIE 113
+ +A +Y + PT F K +E
Sbjct: 62 ECEDIAMEYNISSMPTFVFLKNGVKVE 88
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 70.4 bits (173), Expect = 7e-17
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 22 TEEDGVLVL-TQDNFQSSIEKHDH----ILVEFYAPWCGHCKQLVPEYSKAALQLATDGH 76
EE V+ T+ F + + ++++F A WCG C+ + P ++ + A
Sbjct: 3 AEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFA----EYAKKFP 58
Query: 77 DIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIE 113
KVD + +AE Y V PT F K ++
Sbjct: 59 GAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVD 95
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 70.3 bits (172), Expect = 1e-16
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 19/98 (19%)
Query: 25 DGVLVLTQDNFQSSIEKHDH------------ILVEFYAPWCGHCKQLVPEYSKAAL-QL 71
G + LT+ F I +++ +V+FYA WCG CK + P L +L
Sbjct: 22 SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAP-----ILEEL 76
Query: 72 ATDGHD-IKLAKVDATQHTALAEQYGVRGYPTLKFFKK 108
+ + I + KV+ + LA +G++ PT+ F
Sbjct: 77 SKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPM 114
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 69.2 bits (170), Expect = 2e-16
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 27 VLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAAL-QLATD-GHDIKLAKVD 84
++ T +F + + +L +F+APWCG K + P L +L + G +K+ K+D
Sbjct: 3 IVKATDQSFSAETSEGV-VLADFWAPWCGPSKMIAP-----VLEELDQEMGDKLKIVKID 56
Query: 85 ATQHTALAEQYGVRGYPTLKFFK 107
++ A +YGV PTL K
Sbjct: 57 VDENQETAGKYGVMSIPTLLVLK 79
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 69.8 bits (171), Expect = 2e-16
Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 27 VLVLTQDNFQSSIEKHDH----ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAK 82
L+ T++ + + + +L F A WCG +Q+ P Y +L+ + +
Sbjct: 27 HLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYI----ELSENYPSLMFLV 82
Query: 83 VDATQHTALAEQYGVRGYPTLKFFKKRSIIE 113
+D + + + + ++ PT F + ++
Sbjct: 83 IDVDELSDFSASWEIKATPTFFFLRDGQQVD 113
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 69.0 bits (169), Expect = 3e-16
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 31 TQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA 90
+ Q + E ++V+F A WCG C+ + P ++ LA ++ KVD + +
Sbjct: 27 WNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFA----DLAKKLPNVLFLKVDTDELKS 82
Query: 91 LAEQYGVRGYPTLKFFKKRSIIE 113
+A + ++ PT F K+ I++
Sbjct: 83 VASDWAIQAMPTFMFLKEGKILD 105
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 68.1 bits (167), Expect = 5e-16
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 27 VLVLTQDNFQSSIEKHDH----ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAK 82
+++ ++ + + + K I+V+F A WCG CK + P + + A + K
Sbjct: 5 IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLK 61
Query: 83 VDATQHTALAEQYGVRGYPTLKFFKKRSIIE 113
VD A+AE G+ PT +K +
Sbjct: 62 VDVDAVAAVAEAAGITAMPTFHVYKDGVKAD 92
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 68.2 bits (167), Expect = 5e-16
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 27 VLVLTQDNFQSSIEKHDH----ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAK 82
+ V + + + IE+ + ++++F A WCG C+ + P ++ LA + K
Sbjct: 15 ISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFA----DLAKKFPNAVFLK 70
Query: 83 VDATQHTALAEQYGVRGYPTLKFFKKRSIIE 113
VD + +AEQ+ V PT F K+ + +
Sbjct: 71 VDVDELKPIAEQFSVEAMPTFLFMKEGDVKD 101
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 68.3 bits (167), Expect = 6e-16
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 22/100 (22%)
Query: 25 DGVLVLTQDNFQSSIEKHDH-ILVEFYAPWCG--------------HCKQLVPEYSKAAL 69
D ++ LT D+F + + K D ILV+F+A WCG CK + P L
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAP-----IL 57
Query: 70 -QLATD-GHDIKLAKVDATQHTALAEQYGVRGYPTLKFFK 107
++A + + +AK++ Q+ A +YG+RG PTL FK
Sbjct: 58 DEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 97
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 64.6 bits (158), Expect = 6e-15
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTL 103
+ F +P C +C + +A + G I + K+D A +YG+ P +
Sbjct: 5 IEVFTSPTCPYCPMAIEVVDEAKKEF---GDKIDVEKIDIMVDREKAIEYGLMAVPAI 59
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 66.3 bits (161), Expect = 3e-14
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 41 KHDHILVEFYAPWCGHCKQLVPEYSK-AALQLATDGHDIKLAKVDATQHTALAEQYGVRG 99
D ++ F P C +C V K A I V+A ++ A+QY V
Sbjct: 133 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA 192
Query: 100 YPTLKFFK 107
P +
Sbjct: 193 VPKIVIQV 200
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 63.7 bits (155), Expect = 1e-13
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 17 FADDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGH 76
++ ++ L + F +++ + V FY+P C HC L P + + A ++ DG
Sbjct: 89 DFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEV--DGL 146
Query: 77 DIKLAKVDATQHTALAEQYGVRGYPTLKFFKK-RSIIEYGEVTSVEYCYQRNWHKRAVTS 135
+++ V+ L GV YP+L F+ + ++Y S E + + V S
Sbjct: 147 -LRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESL--VAFAMQHVRS 203
Query: 136 VIIRKTS 142
+ ++
Sbjct: 204 TVTELST 210
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 61.0 bits (148), Expect = 5e-13
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 27 VLVLTQDNFQSSIEKHDH---ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
+ ++ + + + + + +++ Y C + S LA + K K
Sbjct: 12 LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLS----VLARKFPETKFVKA 67
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114
E Y PT+ +K I
Sbjct: 68 IVNS---CIEHYHDNCLPTIFVYKNGQIEGK 95
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 60.1 bits (146), Expect = 1e-12
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 44 HILVEFYAPWCGHCKQLVPE-YSKAALQLATDGHDIKLAKVDAT--QHTALAEQYGVRGY 100
++V F++ C +C+Q+ S + + + A V + LA +Y V G
Sbjct: 21 MVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVV-ASVSVDTPEGQELARRYRVPGT 79
Query: 101 PTLKFF 106
PT F
Sbjct: 80 PTFVFL 85
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 58.8 bits (142), Expect = 4e-12
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 31 TQDNFQSSI--EKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
++ +I +++ F C QL SK + L+ + VD Q
Sbjct: 10 SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS---KMAAIYLVDVDQT 66
Query: 89 TALAEQYGVRGYPTLKFFKK 108
+ + + P+ FF
Sbjct: 67 AVYTQYFDISYIPSTVFFFN 86
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 57.8 bits (140), Expect = 5e-12
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 27 VLVLTQDNFQSSIEKHDH---ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
+ ++ + + + + + +++ Y C + S LA + K K
Sbjct: 5 LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLS----LLARKFPETKFVKA 60
Query: 84 DATQHTALAEQYGVRGYPTLKFFKKRSIIE 113
+ Y PT+ +K I
Sbjct: 61 IVNS---CIQHYHDNCLPTIFVYKNGQIEA 87
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 55.8 bits (134), Expect = 7e-11
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTAL 91
+D + + ++V + WCG CK L P+++++ +++ H+ + ++ +
Sbjct: 36 EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAEST-EISELSHNFVMVNLEDEEEPKD 94
Query: 92 AEQYGVRG--YPTLKFF 106
E + G P + F
Sbjct: 95 -EDFSPDGGYIPRILFL 110
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 51.1 bits (122), Expect = 2e-09
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 11/89 (12%)
Query: 29 VLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
V T Q +++K + C +C++ S + +++ +
Sbjct: 16 VTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVV-----AETKAHIYFINSEEP 70
Query: 89 ------TALAEQYGVRGYPTLKFFKKRSI 111
A +YG+ P I
Sbjct: 71 SQLNDLQAFRSRYGIPTVPGFVHITDGQI 99
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 50.7 bits (121), Expect = 4e-09
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 35 FQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT---QHTAL 91
+ H L+ F A WC C+ L H + K+D ++ L
Sbjct: 22 LAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFE-VVKIDVGNFDRNLEL 80
Query: 92 AEQYGV---RGYPTLKFF 106
++ YG G P +
Sbjct: 81 SQAYGDPIQDGIPAVVVV 98
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 51.2 bits (122), Expect = 9e-09
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Query: 29 VLTQDNFQSSIEKHDH---ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
+ + + F +IEK I+V Y C L LA + +K K+ A
Sbjct: 117 LESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLI----CLAAEYPMVKFCKIKA 172
Query: 86 TQHTALAEQYGVRGYPTLKFFKKRSIIE 113
+T +++ PTL +K ++
Sbjct: 173 -SNTGAGDRFSSDVLPTLLVYKGGELLS 199
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 49.4 bits (117), Expect = 3e-08
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 41 KHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHD-IKLAKVDATQHTALAEQYGVRG 99
K + P C +C V A + G+ I V+A ++ +A++YGV
Sbjct: 137 KGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMS 196
Query: 100 YPTL 103
P++
Sbjct: 197 VPSI 200
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 47.0 bits (111), Expect = 1e-07
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 12/92 (13%)
Query: 22 TEEDGVLVLTQDNFQSSIEKHDHILVEFYAP---WCGHCKQL---VPEYSKAALQLATDG 75
+ ++ + I I+V F+ L +PE A
Sbjct: 12 ARPNAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAF------P 65
Query: 76 HDIKLAKVDATQHTALAEQYGVRGYPTLKFFK 107
+ A+V A L ++GV P+L +
Sbjct: 66 GRLVAAEVAAEAERGLMARFGVAVCPSLAVVQ 97
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 46.5 bits (110), Expect = 2e-07
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 35 FQSSIEKHDHILVEF-YAPWCGHCKQLVPE-YSKAALQLATDGHDIKLAKVDAT------ 86
+ S + H I + F + WC C ++ + + + H + +VD
Sbjct: 40 LEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLH-MVEVDFPQKNHQP 98
Query: 87 -----QHTALAEQYGVRGYPTLKFF 106
++ L QY V G+P L F
Sbjct: 99 EEQRQKNQELKAQYKVTGFPELVFI 123
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 44.7 bits (105), Expect = 5e-07
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 47 VEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA-TQHTALAEQYGVRGYPTLKF 105
+ A WC HC+ + A Q+ ++ + T + G+ YPT
Sbjct: 17 TMYGAYWCPHCQDQKELFGAAFDQVPY----VECSPNGPGTPQAQECTEAGITSYPTWII 72
Query: 106 FKKR 109
+
Sbjct: 73 NGRT 76
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 45.4 bits (107), Expect = 9e-07
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Query: 29 VLTQDNFQSSIEKHDH---ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA 85
+ T + F +IEK I+V Y C L LA + +K K+ A
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLE----CLAAEYPMVKFCKIRA 159
Query: 86 TQHTALAEQYGVRGYPTLKFFKKRSIIE 113
+T +++ PTL +K +I
Sbjct: 160 -SNTGAGDRFSSDVLPTLLVYKGGELIS 186
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 45.4 bits (106), Expect = 1e-06
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 29 VLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDA-TQ 87
+ + + A WC HC+ + A Q+ ++ + T
Sbjct: 184 PPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVPY----VECSPNGPGTP 239
Query: 88 HTALAEQYGVRGYPTLKFFKKR 109
+ G+ YPT +
Sbjct: 240 QAQECTEAGITSYPTWIINGRT 261
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 43.1 bits (101), Expect = 2e-06
Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 3/80 (3%)
Query: 35 FQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDAT--QHTALA 92
+K + L+ F P C +C + E + +G + ++ L
Sbjct: 11 GSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTD-EGRAAPVQRLQMRDPLPPGLE 69
Query: 93 EQYGVRGYPTLKFFKKRSII 112
V PT
Sbjct: 70 LARPVTFTPTFVLMAGDVES 89
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 42.7 bits (101), Expect = 4e-06
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 25/84 (29%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAA-------------LQLATDGHDIKLAKV-------- 83
++ FY P C +C++ +++ L + D + + A
Sbjct: 30 TMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGW 89
Query: 84 ----DATQHTALAEQYGVRGYPTL 103
+ + Y +R PT+
Sbjct: 90 IVGWNKAGDIRTRQLYDIRATPTI 113
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Shigella flexneri 2A} PDB: 2hfd_A
Length = 140
Score = 41.6 bits (97), Expect = 1e-05
Identities = 10/89 (11%), Positives = 26/89 (29%), Gaps = 10/89 (11%)
Query: 24 EDGVLVLTQDNFQSSIEKHDH--ILVEFYAPWCGHCKQL---VPEYSKAALQLATDGHDI 78
G +++ + + +L+ + E +
Sbjct: 16 ARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEF-----PDYTW 70
Query: 79 KLAKVDATQHTALAEQYGVRGYPTLKFFK 107
++A D Q A+ +++G +P F
Sbjct: 71 QVAIADLEQSEAIGDRFGAFRFPATLVFT 99
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 41.2 bits (97), Expect = 1e-05
Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 25/84 (29%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAA-------------LQLATDGHDIKLAKV-------- 83
L+ P C C +++ + L + D + K
Sbjct: 34 TLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEW 93
Query: 84 ----DATQHTALAEQYGVRGYPTL 103
D Y +R PTL
Sbjct: 94 TNGYDKELVIKNKNLYDLRAIPTL 117
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 41.2 bits (97), Expect = 2e-05
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 23/81 (28%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDG-------HDIKLAKV-------------- 83
++ F+ CGHC+Q P+ L+ G + K +
Sbjct: 34 TILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLN 93
Query: 84 --DATQHTALAEQYGVRGYPT 102
D+ HT Y + P
Sbjct: 94 VRDSKNHTDFKITYDIYATPV 114
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 40.3 bits (94), Expect = 4e-05
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 45 ILVEFYAPWCGHCKQLVPE-YSKAALQLATDGHDIKLA-KVDATQHTALAEQYGVRGYPT 102
+++ C+ L + +S A++ H I D+ + + Y + +P
Sbjct: 45 LMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPY 104
Query: 103 LKFFKKRS 110
+ R+
Sbjct: 105 VSILDPRT 112
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 39.2 bits (91), Expect = 1e-04
Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 8/80 (10%)
Query: 32 QDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTAL 91
IE+ +LV WC C+ + +I+LA + +
Sbjct: 45 LTERLQRIERRYRLLV-AGEMWCPDCQINLAALDF----AQRLQPNIELAIISKGRAEDD 99
Query: 92 AEQY---GVRGYPTLKFFKK 108
Q P + +
Sbjct: 100 LRQRLALERIAIPLVLVLDE 119
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 37.8 bits (88), Expect = 3e-04
Identities = 14/124 (11%), Positives = 30/124 (24%), Gaps = 33/124 (26%)
Query: 17 FADDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKA--------- 67
++ +V + + + F A WC + P+
Sbjct: 9 YSTNVLKGAAADIALPSL------AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN 62
Query: 68 --ALQLATDGHDIKLAK------------VDATQHTALAEQYGVRGYPTLKFFKKRSIIE 113
+ ++ D D L + V+ PTL + +
Sbjct: 63 FEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEA----D 118
Query: 114 YGEV 117
G +
Sbjct: 119 SGNI 122
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 37.0 bits (85), Expect = 6e-04
Identities = 6/62 (9%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
++V + C + + L +++ + + + G + P +
Sbjct: 47 LMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDG-QYVPRIM 105
Query: 105 FF 106
F
Sbjct: 106 FV 107
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 35.9 bits (83), Expect = 0.001
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 27/100 (27%)
Query: 41 KHDHILVEFYAPWCGHCKQLVP-------EYSKA----ALQLATDGHDIKLAK------- 82
+ F A WC + P ++ ++ + D + A
Sbjct: 27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPW 86
Query: 83 -----VDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEV 117
+ L++ + V PTL + G+V
Sbjct: 87 LAVPFAQSEAVQKLSKHFNVESIPTLIGVDA----DSGDV 122
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 36.0 bits (82), Expect = 0.002
Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 38/112 (33%)
Query: 30 LTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSK----------------------- 66
L ++ + H++ F CG+C +L + +
Sbjct: 74 LEKEMIVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAE 133
Query: 67 -------------AALQLATDGHDIKLAKVDAT--QHTALAEQYGVRGYPTL 103
A G + A D H AL Q GV G P +
Sbjct: 134 KEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAV 185
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 35.5 bits (82), Expect = 0.002
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 25/97 (25%)
Query: 37 SSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH-------- 88
+++ D I F A WC C+ P + +L D ++ V + +
Sbjct: 21 EALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYM 80
Query: 89 -----------------TALAEQYGVRGYPTLKFFKK 108
+ + +YG+ G P L KK
Sbjct: 81 MESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKK 117
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 35.1 bits (80), Expect = 0.002
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 27 VLVLTQDNFQSSIEKHD--HILVEFYA-------PWCGHCKQLVPEYSKAALQLATDGHD 77
V V + F ++E+H+ I F WC C Q P + ++
Sbjct: 7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVF 66
Query: 78 IKLAKVDATQ----HTALAEQYGVRGYPTLKFFK 107
I + + + V PTL +
Sbjct: 67 IYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYG 100
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 35.0 bits (81), Expect = 0.002
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 17/75 (22%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDI-----------KLAKVDAT------Q 87
+LV F+A WC +C+ +P + + K + +
Sbjct: 44 VLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDA 103
Query: 88 HTALAEQYGVRGYPT 102
+ ++YG P
Sbjct: 104 TGQVQQRYGANRLPD 118
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 34.8 bits (80), Expect = 0.003
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 27/100 (27%)
Query: 41 KHDHILVEFYAPWCGHCKQLVPEYSKA-----------ALQLATDGHDIKLAK------- 82
+ F A WC C+ P+ + + + D +
Sbjct: 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPW 106
Query: 83 -----VDATQHTALAEQYGVRGYPTLKFFKKRSIIEYGEV 117
+ AL ++Y V PTL + G+
Sbjct: 107 LSIPFANRNIVEALTKKYSVESIPTLIGLNA----DTGDT 142
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 33.8 bits (78), Expect = 0.006
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 21/95 (22%)
Query: 45 ILVEFYAPWCGHCK-------QLVPEY------------SKAALQLATDGHDIKLAKVDA 85
++ F+APWC C+ Q+ + A+Q + + +K A
Sbjct: 28 AVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLA 87
Query: 86 TQHTALAEQYGVRGYPTLKFFKKRSIIEY--GEVT 118
++ +GV P F ++ G ++
Sbjct: 88 DTDGSVWANFGVTQQPAYAFVDPHGNVDVVRGRMS 122
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 34.0 bits (78), Expect = 0.006
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 29/103 (28%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAA----------LQLATDGHDIKLAKVDATQ------- 87
L++F+A WC C + + K A + +A+ G + + +
Sbjct: 41 TLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNY 100
Query: 88 ---------HTALAEQYGVRGYPTLKFFKKRSIIEY---GEVT 118
+A+ + YP+ K ++ G +
Sbjct: 101 PKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSIN 143
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 33.8 bits (78), Expect = 0.007
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 31/103 (30%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKA-----------ALQLATDGHDIKLAKV---------- 83
L+ F++ C CK+ +P+ ++ A+ + D+ K+
Sbjct: 32 TLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDIT 91
Query: 84 -----DATQHTALAEQYGVRGYPTLKFFKKRSIIEY---GEVT 118
D+ AL + + P F K + + G
Sbjct: 92 QPIFVDSDH--ALTDAFENEYVPAYYVFDKTGQLRHFQAGGSG 132
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 33.5 bits (77), Expect = 0.009
Identities = 8/82 (9%), Positives = 21/82 (25%), Gaps = 24/82 (29%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHT--------------- 89
L+ F+A + + + + + D + +D +
Sbjct: 35 TLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQ 94
Query: 90 ---------ALAEQYGVRGYPT 102
L ++Y +R
Sbjct: 95 FHEGLGKESELYKKYDLRKGFK 116
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 33.0 bits (76), Expect = 0.013
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 18/76 (23%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKA----------ALQLATDGHDIK--LAKVDAT------ 86
++ F+ PWC C P S+ + D ++ ++K +
Sbjct: 27 AVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLND 86
Query: 87 QHTALAEQYGVRGYPT 102
+ +Y V P
Sbjct: 87 ADGVIWARYNVPWQPA 102
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 32.7 bits (75), Expect = 0.018
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 25/81 (30%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDI--------KLAKV------------- 83
++V F+A WC C++ +P + +A + V
Sbjct: 31 VIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPV 90
Query: 84 --DATQHTALAEQYGVRGYPT 102
DA + + + YG G P
Sbjct: 91 LLDADK--RVGKLYGTTGVPE 109
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 32.7 bits (75), Expect = 0.018
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 23/81 (28%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKA------------ALQLATDGHDIKLAK--VDATQHT- 89
++ F+ WC CK+ +P++ + L + ++ + + A + T
Sbjct: 37 TILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTF 96
Query: 90 --------ALAEQYGVRGYPT 102
L ++Y + PT
Sbjct: 97 PIVLDSKGELMKEYHIITIPT 117
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 32.3 bits (74), Expect = 0.022
Identities = 6/79 (7%), Positives = 17/79 (21%), Gaps = 21/79 (26%)
Query: 45 ILVEFYAPWCGHCKQLVPE---------------------YSKAALQLATDGHDIKLAKV 83
+L++F + + + D +
Sbjct: 38 VLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRD 97
Query: 84 DATQHTALAEQYGVRGYPT 102
+++ Y V P+
Sbjct: 98 ANGAYSSYISLYNVTNLPS 116
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 33.0 bits (75), Expect = 0.023
Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 29/97 (29%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKA------------ALQLATDGHDIKLAKV--------- 83
+L++F+A C +C++ +P + + V
Sbjct: 85 VLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGI 144
Query: 84 ------DATQHTALAEQYGVRGYPTLKFFKKRSIIEY 114
D A Y R +P + +
Sbjct: 145 SYPIALDNNY--ATWTNYRNRYWPAEYLIDATGTVRH 179
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 32.0 bits (72), Expect = 0.030
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLK 104
+ + F + C ++ K A + + + VD T+ Y + ++
Sbjct: 44 VCIRFGHDYDPDCMKMDELLYKVADDIK---NFCVIYLVDITEVPDFNTMYELYDPVSVM 100
Query: 105 FFKKRSIIE 113
FF + +
Sbjct: 101 FFYRNKHMM 109
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 31.9 bits (73), Expect = 0.032
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 25/81 (30%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDI--------KLAKV------------- 83
L+ F+ P C C +P+ K A + + V
Sbjct: 31 TLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTV 90
Query: 84 --DATQHTALAEQYGVRGYPT 102
DA + A+ + +G + YPT
Sbjct: 91 MYDADK--AVGQAFGTQVYPT 109
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 32.0 bits (72), Expect = 0.036
Identities = 9/98 (9%), Positives = 28/98 (28%), Gaps = 26/98 (26%)
Query: 35 FQSSIEKHDHILVEFYAPWCGHCKQL---------VPEYSKA-----------------A 68
+ + + + ++++F C +C+++ V
Sbjct: 40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEP 99
Query: 69 LQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTLKFF 106
+++ +G + L V ++G P
Sbjct: 100 VKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLI 137
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like,
structural genomics, PSI, protein structure initiative;
NMR {Nitrosomonas europaea}
Length = 107
Score = 31.3 bits (71), Expect = 0.039
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 52 PWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQYGVR 98
C C+++ A+L++ +L ++ + L Y R
Sbjct: 38 EGCHLCEEM-----IASLRVLQKKSWFELEVINIDGNEHLTRLYNDR 79
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 31.5 bits (72), Expect = 0.041
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 23/81 (28%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKA------------ALQLATDGHDIKLA----------- 81
+LV+F+ C C++ P K + D K A
Sbjct: 32 VLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQV 91
Query: 82 KVDATQHTALAEQYGVRGYPT 102
+ + E Y + G+P
Sbjct: 92 LLQKDDVKDVLESYCIVGFPH 112
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 31.5 bits (72), Expect = 0.050
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 23/82 (28%)
Query: 45 ILVEFYAPWCGHCKQLVP-------EYSKA------ALQLATDGHDIK--LAKVDATQH- 88
+ + F A WC C+ P ++ A + + D K+
Sbjct: 31 VFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALP 90
Query: 89 -------TALAEQYGVRGYPTL 103
+ L + +GV PTL
Sbjct: 91 FDQRSTVSELGKTFGVESIPTL 112
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 31.1 bits (71), Expect = 0.052
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 24/82 (29%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGH--------DIKLAKV------------- 83
+L+ F+A WC + E + + + + DI
Sbjct: 36 LLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQ 95
Query: 84 ---DATQHTALAEQYGVRGYPT 102
+ A+QY + PT
Sbjct: 96 VCDFTGLSSETAKQYAILTLPT 117
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825
/ FA 1090), DSBC, structural genomics, unknown funct 2;
2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 31.2 bits (70), Expect = 0.053
Identities = 18/99 (18%), Positives = 25/99 (25%), Gaps = 38/99 (38%)
Query: 43 DHILVEFYAPWCGHCKQLVPEYSK----------------------------------AA 68
+ F P C CK+L E+ K A
Sbjct: 15 KLKVAVFSDPDCPFCKRLEHEFEKMTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKA 74
Query: 69 LQLATDGHDIKLAKVDAT----QHTALAEQYGVRGYPTL 103
+ + T+L EQ+G G PTL
Sbjct: 75 WTDWMRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTL 113
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 31.7 bits (71), Expect = 0.055
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
++EF++ +C HC Q + +K+ K
Sbjct: 117 VLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKY 154
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 31.7 bits (71), Expect = 0.059
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 5/72 (6%)
Query: 17 FADDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGH 76
ADD T G + + + +VE + C HC P
Sbjct: 2 NADDYTA--GKEYVELSSPVPVSQPGKIEVVELFWYGCPHCYAFEPTIVP---WSEKLPA 56
Query: 77 DIKLAKVDATQH 88
D+ ++ A
Sbjct: 57 DVHFVRLPALFG 68
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 31.2 bits (70), Expect = 0.063
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQH 88
+VE + C HC + A D++ V A
Sbjct: 29 VVEIFGYTCPHCAHFDSKLQA---WGARQAKDVRFTLVPAVFG 68
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 31.4 bits (70), Expect = 0.073
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALAEQY 95
++EF++ +C HC Q + K+ K L ++
Sbjct: 24 QVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFLGPLGKEL 74
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 30.7 bits (70), Expect = 0.089
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 24/80 (30%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDI-------KLAKV-------------- 83
+ ++F+A WCG C+Q P ++ + G + K
Sbjct: 31 VYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVA 90
Query: 84 -DATQHTALAEQYGVRGYPT 102
D YGV+G PT
Sbjct: 91 FDPKG--QTPRLYGVKGMPT 108
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 30.8 bits (70), Expect = 0.093
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDI 78
++++F A WCG C++ +P K D D
Sbjct: 36 VMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADF 69
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 30.3 bits (69), Expect = 0.094
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 25/83 (30%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTA-------------- 90
+ ++F+A WC C +P+ + A + D + + +
Sbjct: 25 VYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYK 84
Query: 91 -----------LAEQYGVRGYPT 102
L E YGVR YPT
Sbjct: 85 NLPVLVDPSGKLLETYGVRSYPT 107
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 30.7 bits (70), Expect = 0.094
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 21/79 (26%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDG---------------------HDIKLAKV 83
I ++ +A WCG C+ +P + + A +K ++
Sbjct: 33 IYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQL 92
Query: 84 DATQHTALAEQYGVRGYPT 102
+ Y + G P
Sbjct: 93 HMGTDRTFMDAYLINGIPR 111
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 30.4 bits (69), Expect = 0.11
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 22/80 (27%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQ----------------------LATDGHDIKLAK 82
++ F+A WC CK P + A + + T I L
Sbjct: 33 AVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLA 92
Query: 83 VDATQHTALAEQYGVRGYPT 102
D + +A ++ V G P
Sbjct: 93 SDRDRPHEVAARFKVLGQPW 112
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella
enterica subsp}
Length = 189
Score = 30.4 bits (67), Expect = 0.14
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 10/73 (13%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV----------DATQHTALAEQ 94
+VEF++ +C C ++ K + T+ ALA
Sbjct: 17 AVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLGPLGHELTRAWALAMV 76
Query: 95 YGVRGYPTLKFFK 107
FF
Sbjct: 77 MKETDVIEKAFFT 89
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 29.9 bits (68), Expect = 0.15
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 20/78 (25%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDI---------KLAK--VDATQHT---- 89
+ + F+ WC CK+ P + + G +I + +
Sbjct: 29 VFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVV 88
Query: 90 -----ALAEQYGVRGYPT 102
+ + Y V PT
Sbjct: 89 LDTDRQVLDAYDVSPLPT 106
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58}
PDB: 3dvw_A 3a3t_A
Length = 193
Score = 30.1 bits (67), Expect = 0.17
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 24 EDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
+G N + ++EF+ +C HC L P SK + D+ L
Sbjct: 6 VEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSK---HAKSFKDDMYLRTE 62
Query: 84 DATQH 88
Sbjct: 63 HVVWQ 67
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 29.3 bits (65), Expect = 0.35
Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 14/73 (19%)
Query: 46 LVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV-----------DATQHTALAEQ 94
+ EF++ +C HC P ++ K K ++ A
Sbjct: 22 VSEFFSFYCPHCNTFEPIIAQ---LKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIA 78
Query: 95 YGVRGYPTLKFFK 107
V F
Sbjct: 79 LEVEDKMVPVMFN 91
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 28.9 bits (65), Expect = 0.37
Identities = 15/109 (13%), Positives = 27/109 (24%), Gaps = 35/109 (32%)
Query: 45 ILVEFYAPWCGHCKQ-LVPEYSKAALQLATDG---------------------------- 75
I++E + C C +P K D
Sbjct: 31 IVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEY 90
Query: 76 ---HDIKLAKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY---GEVT 118
+ + + Y +RG P+L K + G+V+
Sbjct: 91 RIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVS 139
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 29.2 bits (65), Expect = 0.38
Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 14/118 (11%)
Query: 22 TEEDGVLVLTQDNFQSSIEKHD--HILVEFYAPW-------CGHCKQLVPEYSKAALQLA 72
++ GV+ +T DN+ ++ C C Y A +
Sbjct: 15 KDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIR 74
Query: 73 TDGHDIKL--AKVDATQHTALAEQYGVRGYPTLKFF---KKRSIIEYGEVTSVEYCYQ 125
+ VD + L + ++ P L + + ++ TS Y Y
Sbjct: 75 SQAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYS 132
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 29.0 bits (65), Expect = 0.43
Identities = 12/94 (12%), Positives = 21/94 (22%), Gaps = 36/94 (38%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKA----------ALQLATDGHDIKLAKVDATQHT----- 89
+++ F A WC C + + A+ T L
Sbjct: 40 VILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPE 99
Query: 90 ---------------------ALAEQYGVRGYPT 102
+L E++ VR
Sbjct: 100 MFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDY 133
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 28.5 bits (64), Expect = 0.47
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDG 75
+V +A WCG C++ +P SK
Sbjct: 27 RIVNLWATWCGPCRKEMPAMSKWYKAQKKGS 57
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 28.5 bits (64), Expect = 0.54
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 26/84 (30%)
Query: 45 ILVEFYAPWCGHC---------KQLVPEYSK----AALQLATDGHD------IKLAKVDA 85
+L+ F+A W +++ +Y K L ++ D IK +D
Sbjct: 36 LLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDW 95
Query: 86 TQ-------HTALAEQYGVRGYPT 102
Q ++ +A+QY + P
Sbjct: 96 EQVCDFGGLNSEVAKQYSIYKIPA 119
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria
meningitidis serogroup B} PDB: 3dvx_A
Length = 195
Score = 28.7 bits (63), Expect = 0.61
Identities = 15/72 (20%), Positives = 24/72 (33%)
Query: 24 EDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKV 83
+G L D + ++EF+ +C HC P K L +D + V
Sbjct: 4 TEGEDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVV 63
Query: 84 DATQHTALAEQY 95
+ LA
Sbjct: 64 WQPEMLGLARMA 75
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 28.4 bits (63), Expect = 0.75
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 46 LVEFYAPWCGHCKQLVPEYSK 66
++EF+A C HC + P
Sbjct: 29 VLEFFAYTCPHCAAIEPMVED 49
Score = 25.0 bits (54), Expect = 8.5
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 11/51 (21%)
Query: 64 YSKAALQLATDGHDIKLAKVDAT-----------QHTALAEQYGVRGYPTL 103
+ K A+ + AK D+ + + LAE + G P
Sbjct: 105 FDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAAHIDGTPAF 155
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 28.2 bits (63), Expect = 0.76
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 36/110 (32%)
Query: 45 ILVEFYAPWCGHCKQ--------LVPEY--------------------SKAALQLATDGH 76
++VE + C C + + AL++ D
Sbjct: 33 VVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEF 92
Query: 77 DIKL-----AKVDATQHTALAEQYGVRGYPTLKFFKKRSIIEY---GEVT 118
IK + + + ++Y + G P++ ++ I G+V
Sbjct: 93 GIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVD 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.83
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 23/100 (23%)
Query: 11 ISP--LVVFADDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAA 68
I L + DV + D ++V+ + + S +EK E S +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK---EST-------------ISIPS 430
Query: 69 LQLATDGHDIKLAKVDATQHTALAEQYGV-RGYPTLKFFK 107
+ L + H ++ + Y + + + +
Sbjct: 431 IYLELKVKLENEYAL----HRSIVDHYNIPKTFDSDDLIP 466
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 27.7 bits (62), Expect = 0.90
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 25/83 (30%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDI-------KLAKV-------------- 83
+V F+A WC C+ +P+ + A+ G +L V
Sbjct: 37 YIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVM 96
Query: 84 ----DATQHTALAEQYGVRGYPT 102
+ + G+ G PT
Sbjct: 97 MATPELIRAFNGYIDGGITGIPT 119
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 27.8 bits (62), Expect = 0.90
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 26/84 (30%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDI--------KLAKV------------- 83
+LV +A WC C++ +P + +L+ ++ K
Sbjct: 63 LLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLG 122
Query: 84 -----DATQHTALAEQYGVRGYPT 102
A L G PT
Sbjct: 123 YFNDQKAKVFQDLKAIGRALGMPT 146
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 28.0 bits (61), Expect = 0.90
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 45 ILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIK 79
L++ ++ C C + + + D
Sbjct: 20 TLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFT 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.96
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 13/39 (33%)
Query: 36 QSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAALQL-AT 73
+ +++K L + YA P AL + AT
Sbjct: 19 KQALKKLQASL-KLYAD------DSAP-----ALAIKAT 45
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein;
2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Length = 211
Score = 28.0 bits (61), Expect = 1.1
Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 38/112 (33%)
Query: 30 LTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVP--------------------------- 62
+ + H++ F C +C L
Sbjct: 74 YKDEMIVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTA 133
Query: 63 ---------EYSKAALQLATDGHDIKLAKVDAT--QHTALAEQYGVRGYPTL 103
+ AL A G+ K K +H L Q+GVRG P++
Sbjct: 134 KQMEAIWTAKDPVFALNEAEKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSI 185
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 27.4 bits (61), Expect = 1.3
Identities = 9/82 (10%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 45 ILVEFYAPWCGHCKQLVPE----YSKAALQLATDGHDIKLAKVDATQHT-----ALAEQY 95
+++ + WC C+ + + + D + ++ ++
Sbjct: 62 VILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDN 121
Query: 96 GVRGYPTLKFFKKRSIIEYGEV 117
G+ YP++ + G V
Sbjct: 122 GLD-YPSIYDPPFMTAASLGGV 142
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 26.6 bits (59), Expect = 1.5
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 47 VEFYA-PWCGHCKQLVPEYSKAAL-QLATDGHDIKLAKVDATQHTALAEQ----YGVRGY 100
V Y C CK+ K L L D + + +++ + E+ +
Sbjct: 24 VIMYGLSTCVWCKKT-----KKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSF 78
Query: 101 PTLKFFKKRSIIEY 114
PT +++I+ +
Sbjct: 79 PTTIINDEKAIVGF 92
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 27.3 bits (60), Expect = 1.5
Identities = 13/106 (12%), Positives = 20/106 (18%), Gaps = 45/106 (42%)
Query: 43 DHILVEFYAPWCGHCKQLVPEYSK-----------------------------------A 67
I+ F P+C +CKQ +
Sbjct: 98 PVIVYVFADPFCPYCKQFWQQARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAK 157
Query: 68 ALQLATDGHDIKLAKVDAT----------QHTALAEQYGVRGYPTL 103
Q V A + L + G P +
Sbjct: 158 TWQQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAI 203
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 26.9 bits (58), Expect = 2.3
Identities = 8/49 (16%), Positives = 19/49 (38%)
Query: 44 HILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLAKVDATQHTALA 92
+ E +A CGHC+ + + + TD + + + ++
Sbjct: 24 APVTEVFALSCGHCRNMENFLPVISQEAGTDIGKMHITFNQSAHIASMF 72
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural
genomics center for infectious hydrolase; 1.70A
{Mycobacterium smegmatis} PDB: 3ijf_X
Length = 150
Score = 25.9 bits (57), Expect = 3.4
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 48 EFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLA 81
P CG C+Q++ E+ L + L
Sbjct: 103 GVLMP-CGRCRQVLLEHGGPELLIDHAHGPRPLR 135
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter
pomeroyi}
Length = 175
Score = 26.1 bits (58), Expect = 4.0
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 43 DHILVEFYAPWCGHCKQLVPEYSKAALQLATDGHDIKL 80
D +VEF+ C +C++ + E + D +++L
Sbjct: 23 DVTVVEFFDYNCPYCRRAMAEVQGL---VDADP-NVRL 56
>3r2n_A Cytidine deaminase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.30A {Mycobacterium leprae}
Length = 138
Score = 25.8 bits (57), Expect = 4.0
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 48 EFYAPWCGHCKQLVPEYSKAALQLATDGHDIKLA 81
+ P CG C+QL+ E+ L++ T +A
Sbjct: 88 DSLMP-CGRCRQLLYEHGGPELKIMTPKGVQTMA 120
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 26.0 bits (57), Expect = 5.7
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 1 MRRLSLLFLLISPLVVFADDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAP 52
L +L I+PLVV D V D + D I K +EF P
Sbjct: 192 YEDLYFTYLEINPLVVTKDGVYVLDLAAKV--DATADYICKVKWGDIEFPPP 241
>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein,
thioredoxin fold, transferase; NMR {Synechococcus
elongatus} SCOP: c.47.1.15 PDB: 1t4z_A
Length = 105
Score = 25.0 bits (54), Expect = 6.0
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 66 KAALQLATDGHDIKLAKVDATQHTALAEQYGVRGYPTL 103
K L I L ++ L E Y + P L
Sbjct: 33 KNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPAL 70
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides,
salvage of nucleosides and nucleotides, structural
genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Length = 141
Score = 25.0 bits (55), Expect = 7.4
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 48 EFYAPWCGHCKQLVPEYSKAALQL 71
P CG C+Q++ E K ++
Sbjct: 90 RPVPP-CGACRQVMVELCKQDTKV 112
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB:
2obk_A
Length = 104
Score = 24.7 bits (54), Expect = 7.6
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 119 SVEYCYQRNWHKRAV 133
+ YC Q W RA
Sbjct: 9 VITYCTQCQWLLRAA 23
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.30A {Vibrio cholerae}
Length = 105
Score = 24.7 bits (54), Expect = 8.5
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 119 SVEYCYQRNWHKRA 132
+ YC Q NW R+
Sbjct: 7 EIYYCRQCNWMLRS 20
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for
structural genomics, MCSG, H; 1.50A {Alicyclobacillus
acidocaldarius subsp}
Length = 216
Score = 24.9 bits (54), Expect = 9.4
Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 6/67 (8%)
Query: 9 LLISPLVVFADDVTEEDGVLVLTQDNFQSSIEKHDHILVEFYAPWCGHCKQLVPEYSKAA 68
L+SP + + + + + V+ A + L
Sbjct: 134 FLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDVQAEFDRLLAHLNTWV---- 189
Query: 69 LQLATDG 75
LA D
Sbjct: 190 --LAPDR 194
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 24.9 bits (54), Expect = 9.7
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 22 TEEDGVLVLTQDNFQSSIEKHDHILVE 48
+ G+L+ + + D I +
Sbjct: 41 STASGLLLWQGVEVGEAGQGKDFISLG 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.408
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,169,450
Number of extensions: 117835
Number of successful extensions: 718
Number of sequences better than 10.0: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 219
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)