Query psy7944
Match_columns 231
No_of_seqs 121 out of 178
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 22:49:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hje_A Autoinducer 2 sensor ki 83.5 0.8 2.7E-05 40.2 3.5 24 99-122 117-141 (221)
2 2dmh_A Myoferlin; beta-sandwic 82.8 2.6 8.7E-05 31.5 5.7 44 81-124 85-132 (140)
3 3c38_A Autoinducer 2 sensor ki 80.9 0.97 3.3E-05 40.7 3.2 24 99-122 136-160 (270)
4 3l9b_A Otoferlin; C2-domain, b 75.2 4.2 0.00014 33.3 5.1 47 75-121 89-136 (144)
5 1wfj_A Putative elicitor-respo 75.1 3.1 0.0001 30.9 4.0 45 81-126 86-131 (136)
6 2yrb_A Protein fantom; beta sa 71.7 3.7 0.00013 34.0 4.0 43 81-123 103-148 (156)
7 1rlw_A Phospholipase A2, CALB 70.7 8.8 0.0003 27.9 5.6 42 81-125 84-125 (126)
8 3kwu_A MUNC13-1; calcium bindi 62.1 8.5 0.00029 28.9 4.1 41 80-122 102-144 (148)
9 2ep6_A MCTP2 protein; beta san 61.3 3.2 0.00011 30.9 1.5 42 80-123 87-130 (133)
10 3b7y_A E3 ubiquitin-protein li 61.1 14 0.00047 27.9 5.2 44 80-123 100-151 (153)
11 3m7f_B E3 ubiquitin-protein li 60.5 7.6 0.00026 30.4 3.7 46 80-125 88-141 (176)
12 1p0z_A Sensor kinase CITA; tra 57.3 12 0.0004 28.1 4.1 38 85-122 87-124 (131)
13 3by8_A Sensor protein DCUS; hi 50.1 19 0.00064 27.4 4.3 38 85-122 92-129 (142)
14 3nqr_A Magnesium and cobalt ef 37.5 25 0.00086 25.2 3.1 18 101-118 99-116 (127)
15 3kpb_A Uncharacterized protein 37.3 23 0.00079 24.8 2.8 17 102-118 94-110 (122)
16 4gqw_A CBS domain-containing p 36.0 24 0.00083 25.4 2.8 18 102-119 117-134 (152)
17 3i8n_A Uncharacterized protein 35.1 29 0.00098 25.0 3.1 17 102-118 103-119 (130)
18 2nq3_A Itchy homolog E3 ubiqui 34.8 63 0.0021 25.6 5.3 45 80-124 109-160 (173)
19 3pyc_A E3 ubiquitin-protein li 34.1 26 0.00089 25.7 2.7 41 82-122 85-130 (132)
20 3gby_A Uncharacterized protein 34.0 28 0.00094 24.9 2.8 17 102-118 100-116 (128)
21 3jtf_A Magnesium and cobalt ef 33.8 30 0.001 24.9 3.0 18 101-118 99-116 (129)
22 3sl7_A CBS domain-containing p 33.6 28 0.00095 26.1 2.8 18 102-119 130-147 (180)
23 3lfr_A Putative metal ION tran 33.2 32 0.0011 25.1 3.1 18 102-119 101-118 (136)
24 1gmi_A Protein kinase C, epsil 33.0 42 0.0014 24.8 3.8 17 80-96 91-107 (136)
25 2nyc_A Nuclear protein SNF4; b 31.3 32 0.0011 24.6 2.7 18 101-118 114-131 (144)
26 1djx_A PLC-D1, phosphoinositid 31.3 98 0.0033 29.9 6.9 39 81-122 581-621 (624)
27 3lv9_A Putative transporter; C 31.2 34 0.0012 25.1 3.0 17 102-118 119-135 (148)
28 2ef7_A Hypothetical protein ST 31.2 36 0.0012 24.2 3.0 18 102-119 99-116 (133)
29 2rih_A Conserved protein with 31.0 36 0.0012 24.7 3.0 18 102-119 102-119 (141)
30 2r83_A Synaptotagmin-1; C2A-C2 29.8 73 0.0025 26.2 5.1 45 80-124 99-146 (284)
31 3hf7_A Uncharacterized CBS-dom 29.6 40 0.0014 24.4 3.1 17 102-118 101-117 (130)
32 2p9m_A Hypothetical protein MJ 29.5 38 0.0013 24.2 2.9 18 101-118 109-126 (138)
33 3oi8_A Uncharacterized protein 29.1 39 0.0013 25.3 3.0 18 101-118 133-150 (156)
34 4esy_A CBS domain containing m 27.9 42 0.0014 25.5 3.0 17 102-118 50-66 (170)
35 2fk9_A Protein kinase C, ETA t 27.7 38 0.0013 26.9 2.8 37 81-122 114-154 (157)
36 3oco_A Hemolysin-like protein 27.5 36 0.0012 25.3 2.5 18 102-119 117-134 (153)
37 1o50_A CBS domain-containing p 26.9 45 0.0015 24.7 3.0 18 102-119 127-144 (157)
38 2uv4_A 5'-AMP-activated protei 25.4 45 0.0015 24.6 2.7 17 102-118 125-141 (152)
39 2cjs_A UNC-13 homolog A, MUNC1 25.0 1.4E+02 0.0049 23.5 5.8 38 80-117 83-126 (167)
40 3b47_A GSU0582, methyl-accepti 24.5 84 0.0029 24.1 4.2 23 100-122 93-124 (134)
41 3k6e_A CBS domain protein; str 23.8 48 0.0017 25.3 2.7 18 102-119 49-66 (156)
42 3lhh_A CBS domain protein; str 23.7 55 0.0019 25.0 3.0 18 102-119 138-155 (172)
43 3lqn_A CBS domain protein; csg 23.6 53 0.0018 23.9 2.8 18 102-119 49-66 (150)
44 2cjt_A UNC-13 homolog A, MUNC1 23.2 72 0.0025 23.9 3.6 17 80-96 74-90 (131)
45 3hcy_A Putative two-component 23.1 59 0.002 23.2 2.9 22 98-120 90-111 (151)
46 4dah_A Sporulation kinase D; a 22.2 1.1E+02 0.0037 23.7 4.5 24 100-123 126-149 (217)
47 1f5m_A GAF; CGMP binding, sign 22.1 68 0.0023 25.5 3.3 23 98-120 129-151 (180)
48 3kxr_A Magnesium transporter, 21.7 55 0.0019 26.3 2.7 18 102-119 148-165 (205)
49 3ctu_A CBS domain protein; str 21.4 59 0.002 23.9 2.7 18 102-119 49-66 (156)
50 2emq_A Hypothetical conserved 20.9 72 0.0025 23.3 3.1 19 101-119 44-62 (157)
51 3fio_A A cystathionine beta-sy 20.8 57 0.002 20.7 2.2 18 101-119 23-40 (70)
52 3l2b_A Probable manganase-depe 20.7 61 0.0021 26.1 2.8 18 102-119 218-235 (245)
53 3k2v_A Putative D-arabinose 5- 20.0 69 0.0024 23.5 2.8 17 102-118 62-78 (149)
No 1
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=83.48 E-value=0.8 Score=40.18 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.4
Q ss_pred ccceeEEEEcC-CCCeeEEEEEEEE
Q psy7944 99 PLIQKVAIVNE-KGDVKGHLKIAVQ 122 (231)
Q Consensus 99 ~L~~~VpIVse-kGEVkG~LrVeVq 122 (231)
=|..++||++. +|||.|+|-++|.
T Consensus 117 lLvRR~pIi~~~tGeVlG~Ly~gvV 141 (221)
T 2hje_A 117 MLVRRVPILDPSTGEVLGFSFNAVV 141 (221)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred EEEEccceecCCCCcEEEEEEEEEE
Confidence 36789999997 9999999999984
No 2
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.83 E-value=2.6 Score=31.49 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=33.9
Q ss_pred eeEEeeeeeecccccccccccee---EEEEcCCC-CeeEEEEEEEEEe
Q psy7944 81 FRLVGRAFVYLSNLMYPIPLIQK---VAIVNEKG-DVKGHLKIAVQIV 124 (231)
Q Consensus 81 fsLIGrA~VyLsnLly~V~L~~~---VpIVsekG-EVkG~LrVeVqpi 124 (231)
..+||.+.|.|+.|...-...+- +|+.+.+| ...|.|+|.++-.
T Consensus 85 ~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~ 132 (140)
T 2dmh_A 85 NKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYD 132 (140)
T ss_dssp CCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEEC
T ss_pred CceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEE
Confidence 46899999999999766554544 45888766 5779999999765
No 3
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=80.93 E-value=0.97 Score=40.69 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=20.5
Q ss_pred ccceeEEEEcC-CCCeeEEEEEEEE
Q psy7944 99 PLIQKVAIVNE-KGDVKGHLKIAVQ 122 (231)
Q Consensus 99 ~L~~~VpIVse-kGEVkG~LrVeVq 122 (231)
=|..++||++. +|||.|+|-++|.
T Consensus 136 lLvRr~pIid~~TGEVlG~Ly~gvV 160 (270)
T 3c38_A 136 ILMRRSSLIEAGTGQVVGYLYVGIV 160 (270)
T ss_dssp EEEEEEEECCCC-CCCCEEEEEEEE
T ss_pred EEEEccceecCCCCcEEEEEEEEEE
Confidence 36789999997 9999999999984
No 4
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=75.24 E-value=4.2 Score=33.29 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=38.1
Q ss_pred CCCCCceeEEeeeeeeccccccccccceeEEEEcCCCCee-EEEEEEE
Q psy7944 75 YDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVK-GHLKIAV 121 (231)
Q Consensus 75 YD~~p~fsLIGrA~VyLsnLly~V~L~~~VpIVsekGEVk-G~LrVeV 121 (231)
|++.-..++||.+.|.|+.|.-.=.+.-..+|+|.++... |.+.++|
T Consensus 89 ~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l 136 (144)
T 3l9b_A 89 YSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEV 136 (144)
T ss_dssp ECTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEE
Confidence 5665567899999999999997777778899999999988 5555544
No 5
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=75.13 E-value=3.1 Score=30.89 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=33.4
Q ss_pred eeEEeeeeeeccccccc-cccceeEEEEcCCCCeeEEEEEEEEEecC
Q psy7944 81 FRLVGRAFVYLSNLMYP-IPLIQKVAIVNEKGDVKGHLKIAVQIVTD 126 (231)
Q Consensus 81 fsLIGrA~VyLsnLly~-V~L~~~VpIVsekGEVkG~LrVeVqpisd 126 (231)
..+||.+.|.|+.|+.. -.....+++. .+|...|.|+|+++-...
T Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 86 DDAVGEATIPLEPVFVEGSIPPTAYNVV-KDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp TCCSEEEEEESHHHHHHSEEEEEEEEEE-ETTEEEEEEEEEEEEEEC
T ss_pred CceEEEEEEEHHHhccCCCCCcEEEEee-cCCccCEEEEEEEEEEeC
Confidence 46899999999999542 2234456666 678899999999987643
No 6
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=71.73 E-value=3.7 Score=33.99 Aligned_cols=43 Identities=7% Similarity=0.221 Sum_probs=37.1
Q ss_pred eeEEeeeeeeccccccccc-cceeEEEEcCCC--CeeEEEEEEEEE
Q psy7944 81 FRLVGRAFVYLSNLMYPIP-LIQKVAIVNEKG--DVKGHLKIAVQI 123 (231)
Q Consensus 81 fsLIGrA~VyLsnLly~V~-L~~~VpIVsekG--EVkG~LrVeVqp 123 (231)
|.+||+|.|.|..|+...+ +...+++++-.| +..|.|++.|.-
T Consensus 103 ~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL 148 (156)
T 2yrb_A 103 YETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRL 148 (156)
T ss_dssp EEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEE
T ss_pred ceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEE
Confidence 7899999999999995544 777999999999 679999999853
No 7
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=70.71 E-value=8.8 Score=27.86 Aligned_cols=42 Identities=10% Similarity=0.028 Sum_probs=32.4
Q ss_pred eeEEeeeeeeccccccccccceeEEEEcCCCCeeEEEEEEEEEec
Q psy7944 81 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIVT 125 (231)
Q Consensus 81 fsLIGrA~VyLsnLly~V~L~~~VpIVsekGEVkG~LrVeVqpis 125 (231)
..+||.+.|.|+.|........-+++.. .-.|.+++.++.++
T Consensus 84 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~---~~~g~i~~~le~~~ 125 (126)
T 1rlw_A 84 DETLGTATFTVSSMKVGEKKEVPFIFNQ---VTEMVLEMSLEVAS 125 (126)
T ss_dssp CEEEEEEEEEGGGSCTTCEEEEEEEETT---TEEEEEEEEEECCC
T ss_pred CceeEEEEEEHHHccCCCcEEEEEEcCC---CceEEEEEEEEeCC
Confidence 4689999999999987776667777643 56788888887653
No 8
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=62.11 E-value=8.5 Score=28.92 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=29.6
Q ss_pred ceeEEeeeeeeccccccccccceeEEEEc--CCCCeeEEEEEEEE
Q psy7944 80 WFRLVGRAFVYLSNLMYPIPLIQKVAIVN--EKGDVKGHLKIAVQ 122 (231)
Q Consensus 80 ~fsLIGrA~VyLsnLly~V~L~~~VpIVs--ekGEVkG~LrVeVq 122 (231)
...+||.+.|.|+.|.- ...+-.++.. .++.+.|.|+|.|.
T Consensus 102 ~~~~lG~~~i~l~~l~~--~~~~w~~L~~~~~~~~~~G~i~l~l~ 144 (148)
T 3kwu_A 102 SDDFLGQTIIEVRTLSG--EMDVWYNLDKRTDKSAVSGAIRLHIS 144 (148)
T ss_dssp SSEEEEEEEEEGGGCCS--EEEEEEECBCSSTTCCCCCEEEEEEE
T ss_pred CCccEEEEEEEHHHCcC--CCCEEEEcccCCCCCCCceEEEEEEE
Confidence 46789999999999843 3445566653 34557799998886
No 9
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=61.29 E-value=3.2 Score=30.85 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=31.0
Q ss_pred ceeEEeeeeeeccccccccccceeEEEEcCC--CCeeEEEEEEEEE
Q psy7944 80 WFRLVGRAFVYLSNLMYPIPLIQKVAIVNEK--GDVKGHLKIAVQI 123 (231)
Q Consensus 80 ~fsLIGrA~VyLsnLly~V~L~~~VpIVsek--GEVkG~LrVeVqp 123 (231)
...+||.+.|.|+.|.... .+-.++.+.+ +...|.|+|+++-
T Consensus 87 ~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~ 130 (133)
T 2ep6_A 87 PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDL 130 (133)
T ss_dssp EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEE
Confidence 3568999999999986543 3556666653 4588999998864
No 10
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=61.05 E-value=14 Score=27.87 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=29.6
Q ss_pred ceeEEeeeeeecccccccccc------ceeEEEEcC--CCCeeEEEEEEEEE
Q psy7944 80 WFRLVGRAFVYLSNLMYPIPL------IQKVAIVNE--KGDVKGHLKIAVQI 123 (231)
Q Consensus 80 ~fsLIGrA~VyLsnLly~V~L------~~~VpIVse--kGEVkG~LrVeVqp 123 (231)
...+||.+.|.|+.|...-.- ..-.++... ++.+.|.|+|+++-
T Consensus 100 ~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~ 151 (153)
T 3b7y_A 100 RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTY 151 (153)
T ss_dssp CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEE
T ss_pred CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEE
Confidence 346899999999888755431 245555443 45678888888763
No 11
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=60.47 E-value=7.6 Score=30.39 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=31.8
Q ss_pred ceeEEeeeeeecccccccccc-c-----eeEEEEc--CCCCeeEEEEEEEEEec
Q psy7944 80 WFRLVGRAFVYLSNLMYPIPL-I-----QKVAIVN--EKGDVKGHLKIAVQIVT 125 (231)
Q Consensus 80 ~fsLIGrA~VyLsnLly~V~L-~-----~~VpIVs--ekGEVkG~LrVeVqpis 125 (231)
...+||.+.|.|+.|...-.. + .-.++.. .++.++|.|+|.+.-+.
T Consensus 88 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p 141 (176)
T 3m7f_B 88 RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 141 (176)
T ss_dssp -CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEe
Confidence 357899999999999865332 1 3445543 46778899999998773
No 12
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=57.25 E-value=12 Score=28.10 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=27.2
Q ss_pred eeeeeeccccccccccceeEEEEcCCCCeeEEEEEEEE
Q psy7944 85 GRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQ 122 (231)
Q Consensus 85 GrA~VyLsnLly~V~L~~~VpIVsekGEVkG~LrVeVq 122 (231)
|..++-+..--+...+...+||.+..|+++|.+-|.+.
T Consensus 87 G~~~~~~~~g~~g~~~~~~~PV~~~~g~viGvv~vg~~ 124 (131)
T 1p0z_A 87 AKSYVSVRKGSLGSSLRGKSPIQDATGKVIGIVSVGYT 124 (131)
T ss_dssp CCCEEEEEEETTEEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCeEEEEEEccceeeEEEEEeEECCCCCEEEEEEEEEE
Confidence 44433333333456778889999999999999998875
No 13
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=50.09 E-value=19 Score=27.44 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=27.2
Q ss_pred eeeeeeccccccccccceeEEEEcCCCCeeEEEEEEEE
Q psy7944 85 GRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQ 122 (231)
Q Consensus 85 GrA~VyLsnLly~V~L~~~VpIVsekGEVkG~LrVeVq 122 (231)
|..++-+..--+...+...+||.+..|+++|.+-|.+.
T Consensus 92 G~~~~~~~~~~~g~~~~~~~PV~~~~g~viGvv~vg~~ 129 (142)
T 3by8_A 92 GEENVAINRGFLAQALRVFTPIYDENHKQIGVVAIGLE 129 (142)
T ss_dssp TCCEEEEECSSSSCEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEecCccEEEEEEEEeEEcCCCCEEEEEEEeEE
Confidence 44333333333556788889999989999999999874
No 14
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=37.45 E-value=25 Score=25.21 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=15.7
Q ss_pred ceeEEEEcCCCCeeEEEE
Q psy7944 101 IQKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 101 ~~~VpIVsekGEVkG~Lr 118 (231)
.+.+||++++|++.|.+.
T Consensus 99 ~~~lpVvd~~g~~~Giit 116 (127)
T 3nqr_A 99 YHMAIVIDEFGGVSGLVT 116 (127)
T ss_dssp CCEEEEECTTSCEEEEEE
T ss_pred CeEEEEEeCCCCEEEEEE
Confidence 367999999999999875
No 15
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=37.30 E-value=23 Score=24.79 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=15.3
Q ss_pred eeEEEEcCCCCeeEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 102 ~~VpIVsekGEVkG~Lr 118 (231)
+.+||++++|++.|.+.
T Consensus 94 ~~l~Vvd~~g~~~Givt 110 (122)
T 3kpb_A 94 SGVPVVDDYRRVVGIVT 110 (122)
T ss_dssp SEEEEECTTCBEEEEEE
T ss_pred CeEEEECCCCCEEEEEe
Confidence 57999999999999875
No 16
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=35.96 E-value=24 Score=25.44 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=15.6
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
+.+||+++.|++.|.+..
T Consensus 117 ~~l~Vvd~~g~~~Giit~ 134 (152)
T 4gqw_A 117 RRLPVVDSDGKLVGIITR 134 (152)
T ss_dssp CEEEEECTTSBEEEEEEH
T ss_pred CEEEEECCCCcEEEEEEH
Confidence 579999999999998763
No 17
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=35.14 E-value=29 Score=25.00 Aligned_cols=17 Identities=35% Similarity=0.476 Sum_probs=15.3
Q ss_pred eeEEEEcCCCCeeEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 102 ~~VpIVsekGEVkG~Lr 118 (231)
+.+||+++.|++.|.+.
T Consensus 103 ~~~~Vvd~~g~~vGivt 119 (130)
T 3i8n_A 103 QLALVVDEYGTVLGLVT 119 (130)
T ss_dssp CEEEEECTTSCEEEEEE
T ss_pred eEEEEEcCCCCEEEEEE
Confidence 67999999999999875
No 18
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=34.85 E-value=63 Score=25.59 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=32.1
Q ss_pred ceeEEeeeeeeccccccccc-----cceeEEEEcC--CCCeeEEEEEEEEEe
Q psy7944 80 WFRLVGRAFVYLSNLMYPIP-----LIQKVAIVNE--KGDVKGHLKIAVQIV 124 (231)
Q Consensus 80 ~fsLIGrA~VyLsnLly~V~-----L~~~VpIVse--kGEVkG~LrVeVqpi 124 (231)
...+||.+.|.|+.|...-+ +....++... ...+.|.|+|.+.-+
T Consensus 109 ~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l 160 (173)
T 2nq3_A 109 SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL 160 (173)
T ss_dssp CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeee
Confidence 45789999999999874322 2345666665 345889999999766
No 19
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=34.05 E-value=26 Score=25.70 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=27.2
Q ss_pred eEEeeeeeeccccc-cccccceeEEEEcC----CCCeeEEEEEEEE
Q psy7944 82 RLVGRAFVYLSNLM-YPIPLIQKVAIVNE----KGDVKGHLKIAVQ 122 (231)
Q Consensus 82 sLIGrA~VyLsnLl-y~V~L~~~VpIVse----kGEVkG~LrVeVq 122 (231)
.+||.+.|.|+.|. ..-.-...+++... ...+.|.|+|+++
T Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~ 130 (132)
T 3pyc_A 85 GFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ 130 (132)
T ss_dssp TEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred CceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence 58999999988873 22222344555543 3356899999886
No 20
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=34.02 E-value=28 Score=24.94 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.9
Q ss_pred eeEEEEcCCCCeeEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 102 ~~VpIVsekGEVkG~Lr 118 (231)
+.+||++++|++.|.+.
T Consensus 100 ~~lpVvd~~g~~~Giit 116 (128)
T 3gby_A 100 SVVPLADEDGRYEGVVS 116 (128)
T ss_dssp SEEEEECTTCBEEEEEE
T ss_pred cEEEEECCCCCEEEEEE
Confidence 46999999999999875
No 21
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=33.81 E-value=30 Score=24.91 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=14.8
Q ss_pred ceeEEEEcCCCCeeEEEE
Q psy7944 101 IQKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 101 ~~~VpIVsekGEVkG~Lr 118 (231)
.+.+||++++|++.|.+.
T Consensus 99 ~~~~pVvd~~g~~~Giit 116 (129)
T 3jtf_A 99 NHLAIVIDEHGGISGLVT 116 (129)
T ss_dssp CCEEEEECC-CCEEEEEE
T ss_pred CeEEEEEeCCCCEEEEEE
Confidence 468999999999999875
No 22
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=33.56 E-value=28 Score=26.07 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=15.7
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
+.+||++++|++.|.+..
T Consensus 130 ~~lpVvd~~g~~vGiit~ 147 (180)
T 3sl7_A 130 RRLPVVDADGKLIGILTR 147 (180)
T ss_dssp CEEEEECTTCBEEEEEEH
T ss_pred CEEEEECCCCeEEEEEEH
Confidence 589999999999999764
No 23
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=33.19 E-value=32 Score=25.12 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=15.7
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
+.+||++++|++.|.+..
T Consensus 101 ~~~~Vvd~~g~lvGiit~ 118 (136)
T 3lfr_A 101 HMAIVIDEYGGVAGLVTI 118 (136)
T ss_dssp CEEEEECTTSCEEEEEEH
T ss_pred eEEEEEeCCCCEEEEEEH
Confidence 679999999999998864
No 24
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=32.95 E-value=42 Score=24.80 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=13.7
Q ss_pred ceeEEeeeeeecccccc
Q psy7944 80 WFRLVGRAFVYLSNLMY 96 (231)
Q Consensus 80 ~fsLIGrA~VyLsnLly 96 (231)
...+||.+.|.|+.|..
T Consensus 91 ~dd~iG~~~i~l~~l~~ 107 (136)
T 1gmi_A 91 YDDFVANCTIQFEELLQ 107 (136)
T ss_dssp SCEEEEEEEEEHHHHTS
T ss_pred CCCEEEEEEEEHHHhcc
Confidence 35689999999988875
No 25
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=31.30 E-value=32 Score=24.64 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=15.5
Q ss_pred ceeEEEEcCCCCeeEEEE
Q psy7944 101 IQKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 101 ~~~VpIVsekGEVkG~Lr 118 (231)
.+.+||+++.|++.|.+.
T Consensus 114 ~~~l~Vvd~~g~~~Giit 131 (144)
T 2nyc_A 114 VHRFFVVDDVGRLVGVLT 131 (144)
T ss_dssp CSEEEEECTTSBEEEEEE
T ss_pred CCEEEEECCCCCEEEEEE
Confidence 357999999999999875
No 26
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=31.25 E-value=98 Score=29.93 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=31.0
Q ss_pred eeEEeeeeeeccccccccccceeEEEEcCCCCee--EEEEEEEE
Q psy7944 81 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVK--GHLKIAVQ 122 (231)
Q Consensus 81 fsLIGrA~VyLsnLly~V~L~~~VpIVsekGEVk--G~LrVeVq 122 (231)
..+||.+.+.|+.|.-.. ..||+.+.+|+.. |.|.|.|+
T Consensus 581 dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~~~~~L~v~i~ 621 (624)
T 1djx_A 581 NDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHPSATLFVKIS 621 (624)
T ss_dssp CEEEEEEEEEGGGBCCEE---EEEEEECTTSCEEEEEEEEEEEE
T ss_pred CceeEEEEEEHHHcCCCc---EEEeCCCCCcCCCCceEEEEEEE
Confidence 457999999999986542 4799999999964 77777765
No 27
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=31.20 E-value=34 Score=25.09 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=15.3
Q ss_pred eeEEEEcCCCCeeEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 102 ~~VpIVsekGEVkG~Lr 118 (231)
+.+||++++|++.|.+.
T Consensus 119 ~~l~Vvd~~g~~~Giit 135 (148)
T 3lv9_A 119 QLAIVVDEYGGTSGVVT 135 (148)
T ss_dssp SEEEEECTTSSEEEEEE
T ss_pred eEEEEEeCCCCEEEEEE
Confidence 57999999999999875
No 28
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=31.17 E-value=36 Score=24.24 Aligned_cols=18 Identities=33% Similarity=0.813 Sum_probs=15.3
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
+.+||+++.|++.|.+..
T Consensus 99 ~~l~Vvd~~g~~~Giit~ 116 (133)
T 2ef7_A 99 RHLPVVDDKGNLKGIISI 116 (133)
T ss_dssp SEEEEECTTSCEEEEEEH
T ss_pred CEEEEECCCCeEEEEEEH
Confidence 468999999999998753
No 29
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=31.03 E-value=36 Score=24.69 Aligned_cols=18 Identities=39% Similarity=0.741 Sum_probs=15.6
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
+.+||+++.|++.|.+..
T Consensus 102 ~~l~Vvd~~g~~~Giit~ 119 (141)
T 2rih_A 102 RHVVVVNKNGELVGVLSI 119 (141)
T ss_dssp SEEEEECTTSCEEEEEEH
T ss_pred eEEEEEcCCCcEEEEEEH
Confidence 579999999999998764
No 30
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=29.75 E-value=73 Score=26.19 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=32.5
Q ss_pred ceeEEeeeeeeccccccccccceeEEEEcCC---CCeeEEEEEEEEEe
Q psy7944 80 WFRLVGRAFVYLSNLMYPIPLIQKVAIVNEK---GDVKGHLKIAVQIV 124 (231)
Q Consensus 80 ~fsLIGrA~VyLsnLly~V~L~~~VpIVsek---GEVkG~LrVeVqpi 124 (231)
...+||.+.|.|+.|...-.+..-.++.+.. ....|.|.+.+.-.
T Consensus 99 ~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~ 146 (284)
T 2r83_A 99 KHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYV 146 (284)
T ss_dssp CCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEE
T ss_pred CCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEec
Confidence 3468999999999998776677777777653 24567777766543
No 31
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=29.62 E-value=40 Score=24.44 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=15.3
Q ss_pred eeEEEEcCCCCeeEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 102 ~~VpIVsekGEVkG~Lr 118 (231)
+.+||+++.|++.|.+.
T Consensus 101 ~~~~Vvd~~g~lvGiit 117 (130)
T 3hf7_A 101 KVGLVVDEYGDIQGLVT 117 (130)
T ss_dssp CEEEEECTTSCEEEEEE
T ss_pred eEEEEEcCCCCEEEEee
Confidence 67999999999999885
No 32
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=29.49 E-value=38 Score=24.21 Aligned_cols=18 Identities=17% Similarity=0.506 Sum_probs=15.5
Q ss_pred ceeEEEEcCCCCeeEEEE
Q psy7944 101 IQKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 101 ~~~VpIVsekGEVkG~Lr 118 (231)
.+.+||+++.|++.|.+.
T Consensus 109 ~~~l~Vvd~~g~~~Giit 126 (138)
T 2p9m_A 109 INQLPVVDKNNKLVGIIS 126 (138)
T ss_dssp CCEEEEECTTSBEEEEEE
T ss_pred ccEEEEECCCCeEEEEEE
Confidence 457999999999999876
No 33
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=29.09 E-value=39 Score=25.31 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=15.6
Q ss_pred ceeEEEEcCCCCeeEEEE
Q psy7944 101 IQKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 101 ~~~VpIVsekGEVkG~Lr 118 (231)
.+.+||+++.|++.|.+.
T Consensus 133 ~~~~~Vvd~~g~~~Givt 150 (156)
T 3oi8_A 133 NHMAIVIDEYGGTSGLVT 150 (156)
T ss_dssp CCEEEEECTTSSEEEEEE
T ss_pred CeEEEEECCCCCEEEEEE
Confidence 367999999999999875
No 34
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=27.90 E-value=42 Score=25.46 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=15.0
Q ss_pred eeEEEEcCCCCeeEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 102 ~~VpIVsekGEVkG~Lr 118 (231)
..+||+|++|++.|.+.
T Consensus 50 ~~~pVvd~~g~lvGiit 66 (170)
T 4esy_A 50 GCAPVVDQNGHLVGIIT 66 (170)
T ss_dssp SEEEEECTTSCEEEEEE
T ss_pred eEEEEEcCCccEEEEEE
Confidence 57999999999999874
No 35
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=27.67 E-value=38 Score=26.92 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=22.4
Q ss_pred eeEEeeeeeeccccccc----cccceeEEEEcCCCCeeEEEEEEEE
Q psy7944 81 FRLVGRAFVYLSNLMYP----IPLIQKVAIVNEKGDVKGHLKIAVQ 122 (231)
Q Consensus 81 fsLIGrA~VyLsnLly~----V~L~~~VpIVsekGEVkG~LrVeVq 122 (231)
.-+||++.|.|+.|... -..+.-+++- -.|.|+|.|+
T Consensus 114 dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~-----~~G~i~l~l~ 154 (157)
T 2fk9_A 114 DHFVANCTLQFQELLRTTGASDTFEGWVDLE-----PEGKVFVVIT 154 (157)
T ss_dssp CEEEEEEEEEHHHHHHHHTTCSEEEEEEECB-----SSCEEEEEEE
T ss_pred CCEEEEEEEEHHHhhcccCCCCcccEEEECC-----CCcEEEEEEE
Confidence 45788888888887754 2233334442 2566666664
No 36
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=27.47 E-value=36 Score=25.28 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=15.6
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
+.+||++++|++.|.+..
T Consensus 117 ~~lpVvd~~g~~vGivt~ 134 (153)
T 3oco_A 117 PMAIVIDEYGGTSGIITD 134 (153)
T ss_dssp SCEEEECTTSCEEEEECH
T ss_pred cEEEEEeCCCCEEEEeeH
Confidence 579999999999998753
No 37
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=26.94 E-value=45 Score=24.74 Aligned_cols=18 Identities=39% Similarity=0.778 Sum_probs=15.4
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
+.+||+++.|++.|.+..
T Consensus 127 ~~lpVvd~~g~~vGiit~ 144 (157)
T 1o50_A 127 QEMPVVDEKGEIVGDLNS 144 (157)
T ss_dssp SEEEEECTTSCEEEEEEH
T ss_pred cEEEEEcCCCEEEEEEEH
Confidence 579999999999998863
No 38
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=25.40 E-value=45 Score=24.59 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=15.1
Q ss_pred eeEEEEcCCCCeeEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 102 ~~VpIVsekGEVkG~Lr 118 (231)
+.+||++..|++.|.+.
T Consensus 125 ~~lpVvd~~g~~vGiit 141 (152)
T 2uv4_A 125 HRLVVVDENDVVKGIVS 141 (152)
T ss_dssp SEEEEECTTSBEEEEEE
T ss_pred eEEEEECCCCeEEEEEE
Confidence 57999999999999875
No 39
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=24.97 E-value=1.4e+02 Score=23.49 Aligned_cols=38 Identities=13% Similarity=0.305 Sum_probs=24.2
Q ss_pred ceeEEeeeeeeccccccccc-----cc-eeEEEEcCCCCeeEEE
Q psy7944 80 WFRLVGRAFVYLSNLMYPIP-----LI-QKVAIVNEKGDVKGHL 117 (231)
Q Consensus 80 ~fsLIGrA~VyLsnLly~V~-----L~-~~VpIVsekGEVkG~L 117 (231)
...+||.+.|.|+.|....+ +. ....++...|+++|..
T Consensus 83 ~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~ 126 (167)
T 2cjs_A 83 WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTK 126 (167)
T ss_dssp CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEE
T ss_pred CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceE
Confidence 45789999999999865431 11 1233455677777663
No 40
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=24.48 E-value=84 Score=24.12 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.4
Q ss_pred cceeEEEEcC---------CCCeeEEEEEEEE
Q psy7944 100 LIQKVAIVNE---------KGDVKGHLKIAVQ 122 (231)
Q Consensus 100 L~~~VpIVse---------kGEVkG~LrVeVq 122 (231)
|..-+||+++ .|+|.|.|.|.+.
T Consensus 93 l~~~~Pi~n~~~C~~CH~~~~~vLG~l~v~~s 124 (134)
T 3b47_A 93 LSFIVPLANEVRCQSCHEQGARFNGAMLLTTS 124 (134)
T ss_dssp EEEEEEEECCTTGGGTSCTTCSEEEEEEEEEE
T ss_pred EEEEEeccCCCCchhhhCCCCeEEEEEEEEEc
Confidence 6678999999 8999999999986
No 41
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=23.77 E-value=48 Score=25.28 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=14.8
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
.++||++.+|++.|.+..
T Consensus 49 s~~pVvd~~~~lvGiit~ 66 (156)
T 3k6e_A 49 TRVPVVTDEKQFVGTIGL 66 (156)
T ss_dssp SEEEEECC-CBEEEEEEH
T ss_pred cEEEEEcCCCcEEEEEEe
Confidence 579999999999999863
No 42
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=23.69 E-value=55 Score=24.96 Aligned_cols=18 Identities=44% Similarity=0.709 Sum_probs=15.7
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
+.+||++++|++.|.+..
T Consensus 138 ~~~pVvd~~g~lvGiit~ 155 (172)
T 3lhh_A 138 QMVFVVDEYGDLKGLVTL 155 (172)
T ss_dssp SEEEEECTTSCEEEEEEH
T ss_pred eEEEEEeCCCCEEEEeeH
Confidence 679999999999998763
No 43
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=23.62 E-value=53 Score=23.91 Aligned_cols=18 Identities=6% Similarity=0.266 Sum_probs=15.5
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
..+||++++|++.|.+..
T Consensus 49 ~~~pVvd~~~~~~Givt~ 66 (150)
T 3lqn_A 49 SAIPVLDPMYKLHGLIST 66 (150)
T ss_dssp SEEEEECTTCBEEEEEEH
T ss_pred cEEEEECCCCCEEEEEEH
Confidence 479999999999998853
No 44
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=23.15 E-value=72 Score=23.91 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=13.9
Q ss_pred ceeEEeeeeeecccccc
Q psy7944 80 WFRLVGRAFVYLSNLMY 96 (231)
Q Consensus 80 ~fsLIGrA~VyLsnLly 96 (231)
...+||.+.|.|+.|..
T Consensus 74 ~dd~iG~~~i~l~~l~~ 90 (131)
T 2cjt_A 74 WDTMVGTVWIPLRTIRQ 90 (131)
T ss_dssp CEEEEEEEEEEGGGSCB
T ss_pred CCCeEEEEEEEHHHhhh
Confidence 45789999999998864
No 45
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=23.06 E-value=59 Score=23.21 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=17.8
Q ss_pred cccceeEEEEcCCCCeeEEEEEE
Q psy7944 98 IPLIQKVAIVNEKGDVKGHLKIA 120 (231)
Q Consensus 98 V~L~~~VpIVsekGEVkG~LrVe 120 (231)
+.-.-.|||+. +|++.|.|.|.
T Consensus 90 ~~s~~~vPl~~-~~~~iGvl~~~ 111 (151)
T 3hcy_A 90 IAALGFFPLVT-EGRLIGKFMTY 111 (151)
T ss_dssp CCEEEEEEEES-SSSEEEEEEEE
T ss_pred chheEEeceEE-CCEEEEEEEEe
Confidence 34445799998 99999999885
No 46
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=22.18 E-value=1.1e+02 Score=23.68 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.7
Q ss_pred cceeEEEEcCCCCeeEEEEEEEEE
Q psy7944 100 LIQKVAIVNEKGDVKGHLKIAVQI 123 (231)
Q Consensus 100 L~~~VpIVsekGEVkG~LrVeVqp 123 (231)
+...+||.+..|+++|.|-+.|..
T Consensus 126 i~ia~pi~~~~g~~~Gvl~~~i~l 149 (217)
T 4dah_A 126 FTICVPVLDSKRNVTDYLVAAIQI 149 (217)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEH
T ss_pred EEEEEEEECCCCCEEEEEEEEEcH
Confidence 556899999999999999998864
No 47
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=22.07 E-value=68 Score=25.49 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=18.7
Q ss_pred cccceeEEEEcCCCCeeEEEEEE
Q psy7944 98 IPLIQKVAIVNEKGDVKGHLKIA 120 (231)
Q Consensus 98 V~L~~~VpIVsekGEVkG~LrVe 120 (231)
..-.-.|||+...|+|.|.|.|.
T Consensus 129 ~~S~l~vPi~~~~g~viGVL~l~ 151 (180)
T 1f5m_A 129 TKSEIVVPIISNDGKTLGVIDID 151 (180)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEE
T ss_pred cceEEEEEEEcCCCeEEEEEEec
Confidence 34455799998899999999984
No 48
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=21.70 E-value=55 Score=26.35 Aligned_cols=18 Identities=11% Similarity=0.612 Sum_probs=16.0
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
+.+|||++.|.+.|.+.+
T Consensus 148 ~~lpVVD~~g~lvGiIT~ 165 (205)
T 3kxr_A 148 IELPVIDDAGELIGRVTL 165 (205)
T ss_dssp SEEEEECTTSBEEEEEEH
T ss_pred CEEEEEcCCCeEEEEEEH
Confidence 579999999999999875
No 49
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=21.40 E-value=59 Score=23.89 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=14.6
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
..+||++++|.+.|.+..
T Consensus 49 ~~~~Vvd~~~~~~Giit~ 66 (156)
T 3ctu_A 49 TRVPVVTDEKQFVGTIGL 66 (156)
T ss_dssp SEEEEECC-CBEEEEEEH
T ss_pred ceEeEECCCCEEEEEEcH
Confidence 579999999999998753
No 50
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=20.94 E-value=72 Score=23.30 Aligned_cols=19 Identities=5% Similarity=0.328 Sum_probs=15.9
Q ss_pred ceeEEEEcCCCCeeEEEEE
Q psy7944 101 IQKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 101 ~~~VpIVsekGEVkG~LrV 119 (231)
...+||++.+|.+.|.+..
T Consensus 44 ~~~~pVvd~~~~~~Givt~ 62 (157)
T 2emq_A 44 YSAIPVLDTSYKLHGLISM 62 (157)
T ss_dssp SSEEEEECTTCCEEEEEEH
T ss_pred ceEEEEEcCCCCEEEEeeH
Confidence 3579999999999999864
No 51
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=20.79 E-value=57 Score=20.70 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=14.4
Q ss_pred ceeEEEEcCCCCeeEEEEE
Q psy7944 101 IQKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 101 ~~~VpIVsekGEVkG~LrV 119 (231)
...+||++. |++.|.+..
T Consensus 23 ~~~~pV~d~-~~l~Givt~ 40 (70)
T 3fio_A 23 AGSAVVMEG-DEILGVVTE 40 (70)
T ss_dssp CSEEEEEET-TEEEEEEEH
T ss_pred CCEEEEEEC-CEEEEEEEH
Confidence 357999998 999998763
No 52
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=20.66 E-value=61 Score=26.08 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=15.9
Q ss_pred eeEEEEcCCCCeeEEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLKI 119 (231)
Q Consensus 102 ~~VpIVsekGEVkG~LrV 119 (231)
+++||+++.|.+.|.+..
T Consensus 218 ~~~pVvd~~~~~~Giit~ 235 (245)
T 3l2b_A 218 SNYPVIDENNKVVGSIAR 235 (245)
T ss_dssp SEEEEECTTCBEEEEEEC
T ss_pred ceEEEEcCCCeEEEEEEH
Confidence 479999999999999874
No 53
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=20.03 E-value=69 Score=23.47 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=15.1
Q ss_pred eeEEEEcCCCCeeEEEE
Q psy7944 102 QKVAIVNEKGDVKGHLK 118 (231)
Q Consensus 102 ~~VpIVsekGEVkG~Lr 118 (231)
..+||++.+|++.|.+.
T Consensus 62 ~~~~Vvd~~~~~~Givt 78 (149)
T 3k2v_A 62 GMTAICDDDMNIIGIFT 78 (149)
T ss_dssp SEEEEECTTCBEEEEEE
T ss_pred cEEEEECCCCcEEEEec
Confidence 57999999999999875
Done!