RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7944
         (231 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.32
 Identities = 41/228 (17%), Positives = 73/228 (32%), Gaps = 54/228 (23%)

Query: 15  PEPYIKEDFLQCLNPKF-SFTNLLPSRQRLEMMREMYHNEAEMSPTSPDYNIESLTGGDP 73
            + Y +E  L+ L   + ++  L+     ++   E        +  +        T G  
Sbjct: 166 TDDYFEE--LRDL---YQTYHVLV--GDLIKFSAETLSELIRTTLDAEKV----FTQG-- 212

Query: 74  FYDRFPWFRLVGRA--FVYLSNLMYPI--PLIQKVAIVNEKGDVKGHLKIAVQI--VTDE 127
             +   W           YL +   PI  PLI  + +         H  +  ++   T  
Sbjct: 213 -LNILEWLENPSNTPDKDYLLS--IPISCPLIGVIQLA--------HYVVTAKLLGFTPG 261

Query: 128 ESTD----LTGTVKQ--SARII--FDDDQQTGRNNKKAVEDSGHQGDKVEENPPCTS--- 176
           E        TG  +   +A  I   D  +    + +KA+      G +  E  P TS   
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321

Query: 177 SMYAFPEENGLWFP-----------EKL-TYLDKIGTVLKLRLQEYVS 212
           S+     EN    P           E++  Y++K  + L    Q  +S
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 1.3
 Identities = 32/226 (14%), Positives = 64/226 (28%), Gaps = 48/226 (21%)

Query: 24  LQCLNPK--F--SFTNLLPSRQRLEMMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFP 79
           +QC      F  +  N       LEM++++ +       +  D+             R  
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-------SSNIKLRIH 228

Query: 80  WFRLVGRAFVYLSNLMYPIPLIQKVAI---VNEKGDVKGHLKIAVQI-VT--DEESTD-L 132
             +   R    L +  Y   L+    +   V           ++ +I +T   ++ TD L
Sbjct: 229 SIQAELRRL--LKSKPYENCLL----VLLNVQNAKAWN-AFNLSCKILLTTRFKQVTDFL 281

Query: 133 TGTVKQSARIIFDDDQQTGRNNKK--------AVEDSGHQGDKVEENPPCTSSMYA--FP 182
           +        +       T    K           +D   +        P   S+ A    
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIR 338

Query: 183 EENGLWFPEKLTYLDKIGTVLKLRL---------QEYVSCCM-PAD 218
           +    W   K    DK+ T+++  L         + +    + P  
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384


>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
           {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
           1hrd_A 1k89_A 1aup_A 2yfh_A
          Length = 449

 Score = 26.4 bits (59), Expect = 9.0
 Identities = 6/30 (20%), Positives = 16/30 (53%)

Query: 183 EENGLWFPEKLTYLDKIGTVLKLRLQEYVS 212
           +  G+   EK+ Y+ ++    + ++Q+Y  
Sbjct: 268 DPEGITTEEKINYMLEMRASGRNKVQDYAD 297


>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur
           protein, non-mevalonate pathway, terpene biosynt
           isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
          Length = 366

 Score = 26.4 bits (59), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 111 GDVK--GHLKIAVQIVTDEESTDLTGTVKQSARI 142
           G+VK  G   I VQ +T  ++ D+  T+ Q  R+
Sbjct: 22  GNVKIGGDAPIVVQSMTSTKTHDVEATLNQIKRL 55


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0805    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,645,433
Number of extensions: 211451
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 7
Length of query: 231
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 141
Effective length of database: 4,188,903
Effective search space: 590635323
Effective search space used: 590635323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)