RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7944
         (231 letters)



>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
           [TaxId: 7054]}
          Length = 541

 Score = 28.7 bits (63), Expect = 0.57
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 42  RLEMMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRA---------FVYLS 92
           R  M+   Y N  E +    D +    +G   ++D    F +V R           V  +
Sbjct: 390 RGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPA 449

Query: 93  ---NLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIVTDEESTD 131
              +++   P I    +     D  G L  AV ++   ++  
Sbjct: 450 ELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT 491


>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
           domain-containing protein 2, MCTP2 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 126

 Score = 25.9 bits (56), Expect = 2.7
 Identities = 6/50 (12%), Positives = 19/50 (38%)

Query: 75  YDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIV 124
            D       +G+  + L ++    P    +   + +   KG + + + ++
Sbjct: 75  EDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI 124


>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 136

 Score = 25.1 bits (54), Expect = 4.7
 Identities = 10/55 (18%), Positives = 18/55 (32%)

Query: 75  YDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIVTDEES 129
            D       VG A + L  +     +      V +  + KG + +A+       S
Sbjct: 80  KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSGPS 134


>d1vhea1 b.49.3.1 (A:73-162) Hypothetical protein YsdC {Bacillus
           subtilis [TaxId: 1423]}
          Length = 90

 Score = 24.3 bits (53), Expect = 5.5
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 102 QKVAIVNEKGDVKGHL-KIAVQIVTDEESTDLTGTVKQSARIIFDDDQQTGRNNKKAVED 160
           Q+V IV +KG++ G +      I++ E         ++ +  I D     G ++++   +
Sbjct: 29  QRVTIVTKKGEITGVIGSKPPHILSPEA--------RKKSVEIKDMFIDIGASSREEALE 80

Query: 161 SG-HQGDKV 168
            G   GD +
Sbjct: 81  WGVLPGDMI 89


>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
           {Domestic duck (Anas platyrhynchos), delta-crystallin
           [TaxId: 8839]}
          Length = 449

 Score = 25.3 bits (54), Expect = 8.5
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 2   RHVYNADLDDINAPEPYIKEDFLQCLNPKFS 32
             +    L+D+ +  P    D  Q  N   S
Sbjct: 387 ITINKLSLEDLKSISPQFSSDVSQVFNFVNS 417


>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
           virus [TaxId: 11099]}
          Length = 588

 Score = 25.2 bits (55), Expect = 9.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 151 GRNNKKAVEDSGHQGDKVEENPP 173
            +N K+ V D    GD V E  P
Sbjct: 171 PKNEKRDVSDDWQAGDLVVEKRP 193


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 903,381
Number of extensions: 41405
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 8
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)