BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7945
         (288 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2
           Protein From Saccharomyces Cerevisiae
          Length = 152

 Score = 32.7 bits (73), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 10/118 (8%)

Query: 117 KHTELDTQFSDAASVQIDNLDPKIKQMYEGVR------DVLSKYRSGKLPKAFKIVPKLR 170
           ++T + T+ S   S  +DN    + ++YEG R      ++L K+    +P A + VP++ 
Sbjct: 25  RNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVPQI- 83

Query: 171 NWEQILYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFERED 228
             E    + A  +LK++  +     S  + I  DK   L    +D +V    +F  ED
Sbjct: 84  --EVTFALDANGILKVSATDKGTGKSESITITNDKGR-LTQEEIDRMVEEAEKFASED 138


>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum
           Vulgare
 pdb|3TCM|B Chain B, Crystal Structure Of Alanine Aminotransferase From Hordeum
           Vulgare
          Length = 500

 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 128 AASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYV 178
           AA+V +DNL+PK+ +    VR  +  +   +L +  K  P    +++ILY 
Sbjct: 20  AATVAVDNLNPKVLKCEYAVRGEIVIHAQ-RLQEQLKTQPGSLPFDEILYC 69


>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
           DONOVANI
          Length = 144

 Score = 27.7 bits (60), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 12/63 (19%)

Query: 110 LREKI-TEK--HTELDTQFSDAASVQI---------DNLDPKIKQMYEGVRDVLSKYRSG 157
           L+EK  TEK  +   D +++DA S +          D   P+ K MY   RD LS    G
Sbjct: 53  LKEKFSTEKPCYVAFDFEYNDAGSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEG 112

Query: 158 KLP 160
            LP
Sbjct: 113 YLP 115


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,054,950
Number of Sequences: 62578
Number of extensions: 304725
Number of successful extensions: 686
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 10
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)