Query psy7945
Match_columns 288
No_of_seqs 191 out of 281
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 22:49:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3871|consensus 100.0 4.1E-79 8.9E-84 581.7 17.2 230 45-274 83-419 (449)
2 PF05291 Bystin: Bystin; Inte 100.0 2.9E-73 6.3E-78 531.6 17.4 180 95-274 1-283 (301)
3 KOG3871|consensus 99.8 3.9E-21 8.4E-26 184.9 0.5 86 1-97 321-408 (449)
4 PF05291 Bystin: Bystin; Inte 99.7 6.2E-19 1.3E-23 166.2 1.5 88 1-97 185-272 (301)
5 PF11510 FA_FANCE: Fanconi Ana 80.3 9.2 0.0002 36.5 8.2 80 185-265 168-247 (263)
6 cd07313 terB_like_2 tellurium 74.6 16 0.00035 28.4 6.9 74 181-262 4-79 (104)
7 PF07240 Turandot: Stress-indu 62.6 7.6 0.00016 31.4 2.8 32 237-268 13-46 (85)
8 PF10731 Anophelin: Thrombin i 51.1 22 0.00048 27.4 3.4 43 41-83 17-59 (65)
9 COG4103 Uncharacterized protei 49.3 39 0.00086 30.0 5.2 60 195-262 49-108 (148)
10 PF03564 DUF1759: Protein of u 46.8 69 0.0015 26.3 6.1 79 4-114 39-129 (145)
11 cd07439 FANCE_c-term Fanconi a 35.8 1.7E+02 0.0037 27.8 7.6 74 190-264 166-239 (254)
12 cd03565 VHS_Tom1 VHS domain fa 31.5 3.3E+02 0.0071 23.2 9.5 25 147-179 2-26 (141)
13 PF11303 DUF3105: Protein of u 29.6 39 0.00085 28.9 2.1 30 246-277 56-86 (130)
14 PF04931 DNA_pol_phi: DNA poly 28.1 50 0.0011 35.5 3.0 17 133-149 734-750 (784)
15 PF05099 TerB: Tellurite resis 27.2 2.3E+02 0.0051 22.8 6.2 74 182-263 31-104 (140)
16 PHA00666 putative protease 26.7 2.1E+02 0.0045 27.3 6.4 40 80-119 93-138 (233)
17 PF04147 Nop14: Nop14-like fam 26.5 1.4E+02 0.0031 32.7 6.1 88 143-246 427-521 (840)
18 PF11116 DUF2624: Protein of u 26.4 87 0.0019 25.4 3.4 30 237-266 18-47 (85)
19 COG3189 Uncharacterized conser 23.4 33 0.00072 29.4 0.5 34 230-267 57-90 (117)
20 PRK10878 hypothetical protein; 23.3 77 0.0017 24.7 2.5 35 83-118 30-64 (72)
21 PF13543 KSR1-SAM: SAM like do 23.0 1.2E+02 0.0026 26.2 3.9 52 135-186 35-86 (129)
22 PRK10363 cpxP periplasmic repr 22.9 49 0.0011 29.8 1.5 24 249-272 50-73 (166)
23 PF12419 DUF3670: SNF2 Helicas 22.2 96 0.0021 26.3 3.1 31 82-112 107-138 (141)
24 TIGR02748 GerC3_HepT heptapren 20.5 3.2E+02 0.007 26.1 6.6 97 167-264 157-273 (319)
25 CHL00184 ycf12 Ycf12; Provisio 20.5 1E+02 0.0022 21.1 2.3 17 171-187 2-18 (33)
No 1
>KOG3871|consensus
Probab=100.00 E-value=4.1e-79 Score=581.74 Aligned_cols=230 Identities=48% Similarity=0.766 Sum_probs=203.1
Q ss_pred hhccccCCCCCCCCCCCc---CCCCCCCCCCCCCCCcccccccCHHhHHHHHHhhcCCCCCCcchHHHHHHHhhhhhhhh
Q psy7945 45 QTTKLHTGDSDNDLDADD---DDKSTTSDDPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTEL 121 (288)
Q Consensus 45 ~FtKf~~~~~~~~~~ded---eE~P~~~~~~e~e~~~~~e~eid~eDe~~l~~Fm~~~~~~~~tLaDiI~eKi~ek~~~~ 121 (288)
.+.+++..+-+++.+.++ |+...+....+..+.+++.+|||++|++.+++|++++++..+||+||||+||+|||+++
T Consensus 83 ~~~~~~~~~~~ee~~i~~~~eddi~D~~~~~d~~~eed~~~Eide~d~~~f~r~l~k~a~~~~tL~diIm~ki~ekead~ 162 (449)
T KOG3871|consen 83 FEARFTTASYGEEDEIEEEDEDDIDDFEMEEDDKEEEDEIVEIDEEDAALFERFLKKSADFNYTLADIIMAKIREKEADV 162 (449)
T ss_pred hhhhccccccccccccccchhcccccccccccchhhhhhhhhcCcchHHHHHHHhccccchhccHHHHHHHHHHHHHhhH
Confidence 344555554443333222 22333333334444455679999999999999999999999999999999999999999
Q ss_pred hcccc--cccccccCCCChHHHHHHHHHHHHHhhcccCCCCCceeeccCCCCHHHHHHHH--------------------
Q psy7945 122 DTQFS--DAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVT-------------------- 179 (288)
Q Consensus 122 ~~~~~--~~~~~~~~~l~pkVvevY~~vG~~Ls~YrSGklPKafKiiP~l~nWeeiL~lT-------------------- 179 (288)
.+.++ +.++.+++.|||||+++|++||.+||+||||||||||||||+|.|||+|||||
T Consensus 163 ~~~~~~~~~~e~~~~~ldpkV~e~Y~~Vg~~lskyrsGKlPKaFKiIp~l~nWediLylT~Pe~Ws~~amyqaTRiF~Sn 242 (449)
T KOG3871|consen 163 ETEQSDPDENEFPMPALDPKVIEMYEGVGSVLSKYRSGKLPKAFKIIPSLRNWEDILYLTEPEEWSPAAMYQATRIFASN 242 (449)
T ss_pred HhhhcccccccCCCCCCCHHHHHHHHHHHHHHHHhhcCCCchhhhcccccccHhHheeecCccccCHHHHHHHHHHHHhc
Confidence 88776 55667889999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy7945 180 -------------------------------------------------------------------------------- 179 (288)
Q Consensus 180 -------------------------------------------------------------------------------- 179 (288)
T Consensus 243 L~~~~~QrFynlvLLpRvRddi~e~kkLnyhLY~AlkKaLyKPsAffkG~l~PL~esgtCtlREAvI~gSvl~K~siPvl 322 (449)
T KOG3871|consen 243 LKPKMAQRFYNLVLLPRVRDDIREYKKLNYHLYQALKKALYKPSAFFKGILFPLVESGTCTLREAVIIGSVLAKVSIPVL 322 (449)
T ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHhhhhHHHHHHHHHHhcCcHHHhccchhhhccCCCchHHHHHHHHHHHhhCcchhH
Confidence
Q ss_pred --HHHHHHHhcccCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhcccCChhhHhh
Q psy7945 180 --AAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGK 257 (288)
Q Consensus 180 --aaaLlkl~e~~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk~dl~~eqke~ 257 (288)
||||++||+|+|||+||+|||+||||||||||||+|+||+|||||++++|.||||||||||+||||||+||+.|||++
T Consensus 323 HSsaallrl~em~ysgatSvFir~lLdKKYalPYrvvD~~V~hFmrf~~d~R~lpVlwHqslLtf~QRYK~di~~eqkda 402 (449)
T KOG3871|consen 323 HSSAALLRLAEMDYSGATSVFIRILLDKKYALPYRVVDALVFHFMRFRTDERVLPVLWHQSLLTFAQRYKNDITQEQKDA 402 (449)
T ss_pred hHHHHHHHHHhcccCCcchHHHHHHhhhhccchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhhcCHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhccCCCCCCCCCc
Q psy7945 258 PCSIYSGLNPIQPLPWK 274 (288)
Q Consensus 258 L~~Llk~~~~~~~~p~~ 274 (288)
|++|+|.|.|+.++|+-
T Consensus 403 Llellr~~~H~~i~PEI 419 (449)
T KOG3871|consen 403 LLELLRLQGHYLIGPEI 419 (449)
T ss_pred HHHHHHhcCCCcCCHHH
Confidence 99999999999999974
No 2
>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].
Probab=100.00 E-value=2.9e-73 Score=531.58 Aligned_cols=180 Identities=58% Similarity=0.938 Sum_probs=172.8
Q ss_pred hhcCCCCCCcchHHHHHHHhhhhhhhhhccccccccccc-CCCChHHHHHHHHHHHHHhhcccCCCCCceeeccCCCCHH
Q psy7945 95 FMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQI-DNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWE 173 (288)
Q Consensus 95 Fm~~~~~~~~tLaDiI~eKi~ek~~~~~~~~~~~~~~~~-~~l~pkVvevY~~vG~~Ls~YrSGklPKafKiiP~l~nWe 173 (288)
||++++++++||||+||+||+|++++.+++.++.++.+. ..+||||++||++||.+||+||||||||||||||+|+|||
T Consensus 1 fm~~~~~~~~~Lad~I~~Ki~e~e~~~~~~~~~~~~~~~~~~l~~kVvevY~~vG~~Ls~YrSGkLPKafKiiP~l~nWE 80 (301)
T PF05291_consen 1 FMNEEAGQRRTLADIIMEKIKEKEAEQQGQQSDEEGKPEPEELDPKVVEVYTKVGELLSRYRSGKLPKAFKIIPSLPNWE 80 (301)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhHhhhccccCccCCCCCcccCCHHHHHHHHHHHHHHhhcCCCCCCcCeecccCchhHH
Confidence 899999999999999999999999998776665555554 4899999999999999999999999999999999999999
Q ss_pred HHHHHH--------------------------------------------------------------------------
Q psy7945 174 QILYVT-------------------------------------------------------------------------- 179 (288)
Q Consensus 174 eiL~lT-------------------------------------------------------------------------- 179 (288)
|||++|
T Consensus 81 eiL~lT~P~~WSp~A~~~aTRiF~SnL~~~~aqrF~~~VLLprvredI~~~KKLn~hly~ALkKalyKP~AffkGil~PL 160 (301)
T PF05291_consen 81 EILYLTRPEKWSPHAMYEATRIFASNLNEKMAQRFYNLVLLPRVREDIAENKKLNYHLYMALKKALYKPAAFFKGILLPL 160 (301)
T ss_pred HHHHhCChhhccHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCcHHHHHHHHHHh
Confidence 999999
Q ss_pred ----------------------------HHHHHHHhcccCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCC
Q psy7945 180 ----------------------------AAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDREL 231 (288)
Q Consensus 180 ----------------------------aaaLlkl~e~~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~L 231 (288)
||||++||+|+|+|++|+|||+||||||||||||||+||+||+||+++.++|
T Consensus 161 ~~sg~CTlrEA~Ii~svl~k~sipvlhsaaaL~kl~~~~~~g~~s~flr~ll~KKYaLP~rviDalv~hFlrf~~~~~~l 240 (301)
T PF05291_consen 161 CESGTCTLREAVIIGSVLAKVSIPVLHSAAALLKLAEMEYSGANSIFLRVLLDKKYALPYRVIDALVFHFLRFRNDKRKL 240 (301)
T ss_pred hcCCCccHHHHHHHHHHHHhcCCCchhHHHHHHHHHcCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCcc
Confidence 7999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcccCChhhHhhHHhHhccCCCCCCCCCc
Q psy7945 232 PVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSGLNPIQPLPWK 274 (288)
Q Consensus 232 PVlWHQsLL~FvqrYk~dl~~eqke~L~~Llk~~~~~~~~p~~ 274 (288)
||+||||||+||||||+|||+|||++|++|+++|+|++|||+-
T Consensus 241 PVlWHq~lL~F~qrYk~di~~eqk~~L~~ll~~~~H~~ItpEI 283 (301)
T PF05291_consen 241 PVLWHQSLLVFVQRYKNDITEEQKEALLELLRKQKHPQITPEI 283 (301)
T ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCHHH
Confidence 9999999999999999999999999999999999999999974
No 3
>KOG3871|consensus
Probab=99.80 E-value=3.9e-21 Score=184.93 Aligned_cols=86 Identities=45% Similarity=0.683 Sum_probs=74.3
Q ss_pred CcchHHHHHHHhccccCCchHHHHHHHHhhhhcCchhhHhhhhhhhccccCCCCCCCCCCCcCCCCCCCCCCCC--CCCc
Q psy7945 1 MLHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKEQTTKLHTGDSDNDLDADDDDKSTTSDDPNF--SGDY 78 (288)
Q Consensus 1 vlHsaaal~~l~~~~~~g~~s~firvllekky~Lp~~vidalve~FtKf~~~~~~~~~~dedeE~P~~~~~~e~--e~~~ 78 (288)
||||||||++||+|+|+|+||+|||+||||||+|||||+|++|+||+||.. ++.++||+||++-. ...+
T Consensus 321 vlHSsaallrl~em~ysgatSvFir~lLdKKYalPYrvvD~~V~hFmrf~~---------d~R~lpVlwHqslLtf~QRY 391 (449)
T KOG3871|consen 321 VLHSSAALLRLAEMDYSGATSVFIRILLDKKYALPYRVVDALVFHFMRFRT---------DERVLPVLWHQSLLTFAQRY 391 (449)
T ss_pred hHhHHHHHHHHHhcccCCcchHHHHHHhhhhccchHHHHHHHHHHHHHhhc---------cccchhHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999986 45999999999443 2222
Q ss_pred ccccccCHHhHHHHHHhhc
Q psy7945 79 YNEIIIDPEDEKALSLFMN 97 (288)
Q Consensus 79 ~~e~eid~eDe~~l~~Fm~ 97 (288)
-.+|.+|+..+|-..+.
T Consensus 392 --K~di~~eqkdaLlellr 408 (449)
T KOG3871|consen 392 --KNDITQEQKDALLELLR 408 (449)
T ss_pred --hhhcCHHHHHHHHHHHH
Confidence 35788888888776554
No 4
>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].
Probab=99.73 E-value=6.2e-19 Score=166.24 Aligned_cols=88 Identities=45% Similarity=0.591 Sum_probs=72.6
Q ss_pred CcchHHHHHHHhccccCCchHHHHHHHHhhhhcCchhhHhhhhhhhccccCCCCCCCCCCCcCCCCCCCCCCCCCCCccc
Q psy7945 1 MLHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSGDYYN 80 (288)
Q Consensus 1 vlHsaaal~~l~~~~~~g~~s~firvllekky~Lp~~vidalve~FtKf~~~~~~~~~~dedeE~P~~~~~~e~e~~~~~ 80 (288)
|+||||||++||+|+|+|++|+|||+||||||+|||||||++|+||.||... .+++|++||++-..---.-
T Consensus 185 vlhsaaaL~kl~~~~~~g~~s~flr~ll~KKYaLP~rviDalv~hFlrf~~~---------~~~lPVlWHq~lL~F~qrY 255 (301)
T PF05291_consen 185 VLHSAAALLKLAEMEYSGANSIFLRVLLDKKYALPYRVIDALVFHFLRFRND---------KRKLPVLWHQSLLVFVQRY 255 (301)
T ss_pred chhHHHHHHHHHcCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHHhccc---------CCcccHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999863 3899999998443211111
Q ss_pred ccccCHHhHHHHHHhhc
Q psy7945 81 EIIIDPEDEKALSLFMN 97 (288)
Q Consensus 81 e~eid~eDe~~l~~Fm~ 97 (288)
--+|++|+-++|-.-+.
T Consensus 256 k~di~~eqk~~L~~ll~ 272 (301)
T PF05291_consen 256 KNDITEEQKEALLELLR 272 (301)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 24677777777766554
No 5
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=80.27 E-value=9.2 Score=36.49 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=52.9
Q ss_pred HHhcccCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhcccCChhhHhhHHhHhcc
Q psy7945 185 KIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSG 264 (288)
Q Consensus 185 kl~e~~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk~dl~~eqke~L~~Llk~ 264 (288)
.+.+.+|+-.+..++..++++|-.|.-..++-++.-+..= ...-.=-+-+-+-+|+|...|...+++.||..|...+..
T Consensus 168 ~~L~~~W~E~~~~Vlq~lL~~k~~l~~~~~~~l~~~L~~~-a~~~skSlkFakLlLtvltKy~~~it~~~~~~L~~~l~~ 246 (263)
T PF11510_consen 168 QILELVWNEETFLVLQSLLERKVELSQELFSLLVELLCEQ-APQFSKSLKFAKLLLTVLTKYQSQITEAHKLSLAEALEL 246 (263)
T ss_dssp HHHHS---HHHHHHHHHHHTT-----HHHHHHHHHHHH---------SHHHHHHHHHHHHHTGGG--HHHHHHHHHHH-S
T ss_pred HHHhCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh-hHhhhcchHHHHHHHHHHHHcchhccHHHHHHHHHHHHh
Confidence 4557899999999999999999999999998888888631 111112244788999999999999999999999888765
Q ss_pred C
Q psy7945 265 L 265 (288)
Q Consensus 265 ~ 265 (288)
.
T Consensus 247 n 247 (263)
T PF11510_consen 247 N 247 (263)
T ss_dssp S
T ss_pred c
Confidence 4
No 6
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=74.61 E-value=16 Score=28.43 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=56.3
Q ss_pred HHHHHHhcc--cCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhcccCChhhHhhH
Q psy7945 181 AALLKIAEM--EYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKP 258 (288)
Q Consensus 181 aaLlkl~e~--~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk~dl~~eqke~L 258 (288)
+-|.++|.. .++-.---.++.++...|.|+-...+.+..+|.+...+.. .+-.|+++.+..++.++|..+
T Consensus 4 ~Ll~~vA~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~r~~~ 75 (104)
T cd07313 4 ALLVEVARADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAP--------DLYEFTSLIKEHFDYEERLEL 75 (104)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHhCCHHHHHHH
Confidence 334566654 4666666678889999999999999999999987554433 245788888888899999999
Q ss_pred HhHh
Q psy7945 259 CSIY 262 (288)
Q Consensus 259 ~~Ll 262 (288)
++.+
T Consensus 76 l~~L 79 (104)
T cd07313 76 VEAL 79 (104)
T ss_pred HHHH
Confidence 8776
No 7
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=62.61 E-value=7.6 Score=31.44 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=28.7
Q ss_pred HHHHHHHHHhccc--CChhhHhhHHhHhccCCCC
Q psy7945 237 QSLLTFAQRYKQD--TSAQNRGKPCSIYSGLNPI 268 (288)
Q Consensus 237 QsLL~FvqrYk~d--l~~eqke~L~~Llk~~~~~ 268 (288)
|.|+.|-.||... |++++|+.+-+.++.|...
T Consensus 13 ~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~ 46 (85)
T PF07240_consen 13 QELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEE 46 (85)
T ss_pred HHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHH
Confidence 7899999999999 9999999999999886543
No 8
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=51.12 E-value=22 Score=27.43 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=28.7
Q ss_pred hhhhhhccccCCCCCCCCCCCcCCCCCCCCCCCCCCCcccccc
Q psy7945 41 AIKEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSGDYYNEII 83 (288)
Q Consensus 41 alve~FtKf~~~~~~~~~~dedeE~P~~~~~~e~e~~~~~e~e 83 (288)
++++-...+.+|.-.+-++|++++.|+..+.+...++.+++++
T Consensus 17 a~vQ~APQYa~GeeP~YDEdd~dde~l~phsss~~d~~~~efd 59 (65)
T PF10731_consen 17 AIVQSAPQYAPGEEPSYDEDDDDDEPLKPHSSSITDDDYEEFD 59 (65)
T ss_pred HHHhcCcccCCCCCCCcCcccCcccccccCCCCCCccchhhcC
Confidence 3566566666665554566677788999998777766665543
No 9
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.29 E-value=39 Score=29.99 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhcccCChhhHhhHHhHh
Q psy7945 195 NSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIY 262 (288)
Q Consensus 195 ~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk~dl~~eqke~L~~Ll 262 (288)
--.=.|.++..+|.+|-.-+|+|+.|=-+|.++.. .|-.|.-.-|.+|+.+||-.|..+|
T Consensus 49 E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~--------d~y~fts~l~r~Ld~e~R~eli~~m 108 (148)
T COG4103 49 EREAFRAILKENFGIDGEELDALIEAGEEAGYEAI--------DLYSFTSVLKRHLDEEQRLELIGLM 108 (148)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 33567889999999999999999999999988754 4678999999999999999999877
No 10
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=46.78 E-value=69 Score=26.30 Aligned_cols=79 Identities=23% Similarity=0.267 Sum_probs=0.0
Q ss_pred hHHHHHHHhccccCCchHHHHHHHHhhhhcCchhhHhhhhhhhccccCCCCCCCCCCCcCCCCCCCCCCCCCCCcccccc
Q psy7945 4 SAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSGDYYNEII 83 (288)
Q Consensus 4 saaal~~l~~~~~~g~~s~firvllekky~Lp~~vidalve~FtKf~~~~~~~~~~dedeE~P~~~~~~e~e~~~~~e~e 83 (288)
...|.--+..++.++.+=--....|+++|+=|..+++++.+.+.++.+
T Consensus 39 ~G~A~~~i~~~~~~~~~Y~~a~~~L~~~yg~~~~i~~~~~~~l~~l~~-------------------------------- 86 (145)
T PF03564_consen 39 KGEAKELIRGLPLSEENYEEAWELLEERYGNPRRIIQALLEELRNLPP-------------------------------- 86 (145)
T ss_pred cchHHHHHHcccccchhhHHHHHHHHHHhCCchHHHHHHHHHHhcccc--------------------------------
Q ss_pred cCHHhHHHHHHhhc------------CCCCCCcchHHHHHHHh
Q psy7945 84 IDPEDEKALSLFMN------------KHPGPQLTLRDILREKI 114 (288)
Q Consensus 84 id~eDe~~l~~Fm~------------~~~~~~~tLaDiI~eKi 114 (288)
+..+|...|..|.. ..+.....+..+|++|+
T Consensus 87 ~~~~d~~~L~~~~~~v~~~i~~L~~lg~~~~~~~l~~~i~~KL 129 (145)
T PF03564_consen 87 ISNDDPEALRSLVDKVNNCIRALKALGVNVDDPLLISIILSKL 129 (145)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHC
No 11
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=35.82 E-value=1.7e+02 Score=27.84 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=59.3
Q ss_pred cCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhcccCChhhHhhHHhHhcc
Q psy7945 190 EYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSG 264 (288)
Q Consensus 190 ~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk~dl~~eqke~L~~Llk~ 264 (288)
.|+-.+-..+..+|++|-.|.-..++.+|.....=... -.=-+-+-+-+++|+..|...++..++..|...+..
T Consensus 166 ~W~E~~~~v~q~lL~~~~~lte~~~~~Lv~~L~~~a~~-~skSlkFa~lll~~itky~~~~~~~~~~~L~~~~~~ 239 (254)
T cd07439 166 VWTEETFTVIQALLNRKPPLSEESFSELVSKLQEQAEA-FSKSLKFAKLLLAVITKYGPQMSPAHKQSLSEALER 239 (254)
T ss_pred cccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-hhccccHHHHHHHHHHHccHhhcHHHHHHHHHHHHh
Confidence 48888889999999999999999999999888642111 011123677899999999999999999999988754
No 12
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=31.46 E-value=3.3e+02 Score=23.20 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=19.2
Q ss_pred HHHHHhhcccCCCCCceeeccCCCCHHHHHHHH
Q psy7945 147 VRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVT 179 (288)
Q Consensus 147 vG~~Ls~YrSGklPKafKiiP~l~nWeeiL~lT 179 (288)
++..+.+-+|..++. +||.-+|.+.
T Consensus 2 ~~~~IekATse~l~~--------~dw~~ileic 26 (141)
T cd03565 2 VGQLIEKATDGSLQS--------EDWGLNMEIC 26 (141)
T ss_pred HhHHHHHHcCcCCCC--------cCHHHHHHHH
Confidence 466777888888764 3999998887
No 13
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=29.62 E-value=39 Score=28.91 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=25.6
Q ss_pred hcccCChhhHhhHHhHhcc-CCCCCCCCCccCC
Q psy7945 246 YKQDTSAQNRGKPCSIYSG-LNPIQPLPWKYDG 277 (288)
Q Consensus 246 Yk~dl~~eqke~L~~Llk~-~~~~~~~p~~~~~ 277 (288)
|.-+++++|+++|.++.+. ..++-++| |.|
T Consensus 56 Y~p~~~~~~v~~L~~l~~~~~~~~visP--~~~ 86 (130)
T PF11303_consen 56 YDPCLPPDQVAKLKALAKSCLPYVVISP--YPG 86 (130)
T ss_pred ECCCCCHHHHHHHHHHHhccCCcEEEec--CCC
Confidence 8889999999999999999 66777778 554
No 14
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=28.07 E-value=50 Score=35.46 Aligned_cols=17 Identities=12% Similarity=0.442 Sum_probs=12.1
Q ss_pred cCCCChHHHHHHHHHHH
Q psy7945 133 IDNLDPKIKQMYEGVRD 149 (288)
Q Consensus 133 ~~~l~pkVvevY~~vG~ 149 (288)
|..||+...++|+.-.+
T Consensus 734 m~~lD~~La~~Fk~r~~ 750 (784)
T PF04931_consen 734 MMALDEQLAAIFKERKE 750 (784)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45688888888876543
No 15
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=27.24 E-value=2.3e+02 Score=22.79 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=53.3
Q ss_pred HHHHHhcccCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhcccCChhhHhhHHhH
Q psy7945 182 ALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSI 261 (288)
Q Consensus 182 aLlkl~e~~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk~dl~~eqke~L~~L 261 (288)
+.+-.|+-..+..---.|+-++...+.+|-.-.+.+..++...... ...+-.|+...+..++.++|..++..
T Consensus 31 ~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~r~~ll~~ 102 (140)
T PF05099_consen 31 AAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQE--------PIDLEELLRELRDSLSPEEREDLLRM 102 (140)
T ss_dssp HHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHH--------CCHHHHHHHHHCTS--HHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhc--------cccHHHHHHHHHHhhchHHHHHHHHH
Confidence 3333456678888888898899999999999999999888664444 22455677888888999999999877
Q ss_pred hc
Q psy7945 262 YS 263 (288)
Q Consensus 262 lk 263 (288)
+-
T Consensus 103 l~ 104 (140)
T PF05099_consen 103 LI 104 (140)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 16
>PHA00666 putative protease
Probab=26.70 E-value=2.1e+02 Score=27.26 Aligned_cols=40 Identities=8% Similarity=0.093 Sum_probs=27.0
Q ss_pred cccccCHHhHHHHHHhhcCCC---CCCcchHH---HHHHHhhhhhh
Q psy7945 80 NEIIIDPEDEKALSLFMNKHP---GPQLTLRD---ILREKITEKHT 119 (288)
Q Consensus 80 ~e~eid~eDe~~l~~Fm~~~~---~~~~tLaD---iI~eKi~ek~~ 119 (288)
|-+++|++..+.|+.|+.... .+-+.|.| .|+.-+++.++
T Consensus 93 EG~elD~~~l~~F~~~a~ElgLtqEQAQklvD~y~ki~~~~qq~qa 138 (233)
T PHA00666 93 EGVELDTGALGAFEPVARELNLTNEQAQKVVDLYTKILPVVQQRQA 138 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhHHHHHHHH
Confidence 568999999999999987531 23367778 45554444443
No 17
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=26.55 E-value=1.4e+02 Score=32.65 Aligned_cols=88 Identities=17% Similarity=0.306 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcccCCCCCceeec-----cCCC--CHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHhhccCChHHHHH
Q psy7945 143 MYEGVRDVLSKYRSGKLPKAFKIV-----PKLR--NWEQILYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVD 215 (288)
Q Consensus 143 vY~~vG~~Ls~YrSGklPKafKii-----P~l~--nWeeiL~lTaaaLlkl~e~~y~g~~S~flr~LldKKYaLP~rvid 215 (288)
-|..+-.+|+.|..-..|.+++-| |+|. |=+-+=-++++-|-. +-.|.+..+..|+.+||
T Consensus 427 s~eel~~lL~~~~~~~~~~iI~RIrk~~hpsLa~~NK~Kl~~f~~vLlq~-------------i~~la~~~~~~~~~~ld 493 (840)
T PF04147_consen 427 SHEELLELLDGYSPEDQPTIIQRIRKCYHPSLAEGNKEKLQVFFGVLLQH-------------ILYLASQDSPPPFEVLD 493 (840)
T ss_pred CHHHHHHHHhcCCHHHHhHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHH-------------HHHHhcccCCcCHHHHH
Confidence 356666677777666666665544 4442 444433333322211 12244455599999999
Q ss_pred HHHHHhHhccccCCCCchHHHHHHHHHHHHh
Q psy7945 216 AIVFHFLRFEREDRELPVLWHQSLLTFAQRY 246 (288)
Q Consensus 216 alV~hF~rF~~~~~~LPVlWHQsLL~FvqrY 246 (288)
.|+.|....... .|.-=..|+..+++..
T Consensus 494 ~L~~~L~~Laq~---~p~~~a~~~r~~L~~~ 521 (840)
T PF04147_consen 494 SLIPHLYDLAQK---YPEEAAECFREVLKEM 521 (840)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 999999876553 4444444444444443
No 18
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=26.42 E-value=87 Score=25.41 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcccCChhhHhhHHhHhccCC
Q psy7945 237 QSLLTFAQRYKQDTSAQNRGKPCSIYSGLN 266 (288)
Q Consensus 237 QsLL~FvqrYk~dl~~eqke~L~~Llk~~~ 266 (288)
.-||-+++.|.-.||.+|-+.+..++|.++
T Consensus 18 ~eLlkyskqy~i~it~~QA~~I~~~lr~k~ 47 (85)
T PF11116_consen 18 KELLKYSKQYNISITKKQAEQIANILRGKN 47 (85)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 468999999999999999999999999987
No 19
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=23.43 E-value=33 Score=29.37 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=25.5
Q ss_pred CCchHHHHHHHHHHHHhcccCChhhHhhHHhHhccCCC
Q psy7945 230 ELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSGLNP 267 (288)
Q Consensus 230 ~LPVlWHQsLL~FvqrYk~dl~~eqke~L~~Llk~~~~ 267 (288)
.-|.-|+ .|++||..+|+..+-.+|.+|+..-.|
T Consensus 57 Hdp~~w~----~F~~rY~~EL~~~~~~~l~~L~~~~~~ 90 (117)
T COG3189 57 HDPKKWD----EFRERYRAELNAQDAQALEDLLDIASH 90 (117)
T ss_pred CCHHHHH----HHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 4566777 699999999976665578777766554
No 20
>PRK10878 hypothetical protein; Provisional
Probab=23.26 E-value=77 Score=24.70 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=25.7
Q ss_pred ccCHHhHHHHHHhhcCCCCCCcchHHHHHHHhhhhh
Q psy7945 83 IIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKH 118 (288)
Q Consensus 83 eid~eDe~~l~~Fm~~~~~~~~tLaDiI~eKi~ek~ 118 (288)
=++.+|-.++.-||.+..+....|+.+| ++|+...
T Consensus 30 LL~~~D~dL~~W~~g~~~p~d~~l~~iV-~~Ir~~~ 64 (72)
T PRK10878 30 LLECDDPDLFNWLMNHGKPADAELERMV-RLIQTRN 64 (72)
T ss_pred HHcCCCHHHHHHHhCCCCCCCHHHHHHH-HHHHHhc
Confidence 3556777788888888878788888776 5677643
No 21
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=22.99 E-value=1.2e+02 Score=26.24 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHHHhhcccCCCCCceeeccCCCCHHHHHHHHHHHHHHH
Q psy7945 135 NLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKI 186 (288)
Q Consensus 135 ~l~pkVvevY~~vG~~Ls~YrSGklPKafKiiP~l~nWeeiL~lTaaaLlkl 186 (288)
.+--|+|+.|.+.=..=.+|..+-.|-.+.=.|+|..|-.++-++...+-.+
T Consensus 35 ~lE~KLvK~fSkQL~~K~k~~~~~~~~~l~~yP~l~~WL~vVgl~~~~i~~i 86 (129)
T PF13543_consen 35 TLEGKLVKYFSKQLQCKAKVAERERAAELNSYPSLRQWLRVVGLRPESIQAI 86 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccCchhcccCCcHHHHhhhcCCCHHHHHHH
Confidence 3456888999888777788988878888888899999999998885444333
No 22
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=22.86 E-value=49 Score=29.80 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=19.8
Q ss_pred cCChhhHhhHHhHhccCCCCCCCC
Q psy7945 249 DTSAQNRGKPCSIYSGLNPIQPLP 272 (288)
Q Consensus 249 dl~~eqke~L~~Llk~~~~~~~~p 272 (288)
+||++||..+++|++.+.+..+.+
T Consensus 50 dLTdaQRqQmRdLm~~~r~~~~~~ 73 (166)
T PRK10363 50 SLTEHQRQQMRDLMQQARHEQPPV 73 (166)
T ss_pred CCCHHHHHHHHHHHHHHHhccccc
Confidence 899999999999998877654444
No 23
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=22.20 E-value=96 Score=26.31 Aligned_cols=31 Identities=35% Similarity=0.611 Sum_probs=24.4
Q ss_pred cccCHHhHHHHHHhhcCCCCCC-cchHHHHHH
Q psy7945 82 IIIDPEDEKALSLFMNKHPGPQ-LTLRDILRE 112 (288)
Q Consensus 82 ~eid~eDe~~l~~Fm~~~~~~~-~tLaDiI~e 112 (288)
+++||++.+.+.+||.+.+... .|++|.+..
T Consensus 107 V~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 107 VELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred EEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 6899999999999988755553 788888754
No 24
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=20.48 E-value=3.2e+02 Score=26.11 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=52.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHh-cc--cCCchHHHHHHHH--HhhccCChHHHHHHHHHHhHh-----------ccccCCC
Q psy7945 167 PKLRNWEQILYVTAAALLKIA-EM--EYNGANSIFLRIL--LDKKYALPYRVVDAIVFHFLR-----------FEREDRE 230 (288)
Q Consensus 167 P~l~nWeeiL~lTaaaLlkl~-e~--~y~g~~S~flr~L--ldKKYaLP~rvidalV~hF~r-----------F~~~~~~ 230 (288)
++...|.+++..=.|+|...| .+ --+|++.-.+..| +-+..++-||+.|.+.++|-. ..+.+..
T Consensus 157 ~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~T 236 (319)
T TIGR02748 157 QNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVT 236 (319)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCch
Confidence 445555555544455555443 22 1234444333332 456788999999999999853 2234568
Q ss_pred CchHHHHH---H-HHHHHHhcccCChhhHhhHHhHhcc
Q psy7945 231 LPVLWHQS---L-LTFAQRYKQDTSAQNRGKPCSIYSG 264 (288)
Q Consensus 231 LPVlWHQs---L-L~FvqrYk~dl~~eqke~L~~Llk~ 264 (288)
+|++.+-. . -.+.+.+++. ++++.+.+.++++.
T Consensus 237 lp~l~al~~~~~~~~l~~~~~~~-~~~~~~~~~~~i~~ 273 (319)
T TIGR02748 237 LPVLYAMEDPFLKKRIEQVLEET-TAEEMEPLIEEVKK 273 (319)
T ss_pred HHHHHHhcCcchhHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 99985431 0 0111222222 55566666666654
No 25
>CHL00184 ycf12 Ycf12; Provisional
Probab=20.46 E-value=1e+02 Score=21.06 Aligned_cols=17 Identities=41% Similarity=0.456 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHHh
Q psy7945 171 NWEQILYVTAAALLKIA 187 (288)
Q Consensus 171 nWeeiL~lTaaaLlkl~ 187 (288)
|||=|.++|+.|++-++
T Consensus 2 N~evi~QL~~l~lIv~a 18 (33)
T CHL00184 2 NLEVIAQLTSLALIVLA 18 (33)
T ss_pred chhHHHHHHHHHHHHHc
Confidence 89999999998887665
Done!