Query psy7945
Match_columns 288
No_of_seqs 191 out of 281
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 22:50:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ilr_A Protein FACE, fanconi a 83.0 7.1 0.00024 36.0 9.8 80 185-265 168-247 (264)
2 3rmg_A Octaprenyl-diphosphate 31.9 73 0.0025 29.4 6.0 120 137-265 131-281 (334)
3 3n05_A NH(3)-dependent NAD(+) 31.2 54 0.0019 32.3 5.2 64 210-287 510-581 (590)
4 3nf2_A Putative polyprenyl syn 30.0 78 0.0027 29.5 5.8 121 139-265 143-298 (352)
5 1abv_A Delta subunit of the F1 29.7 56 0.0019 25.4 4.1 73 181-265 58-131 (134)
6 3k3k_A Abscisic acid receptor 26.2 29 0.001 30.6 2.0 28 248-275 23-50 (211)
7 3jrs_A PYL1, putative uncharac 26.0 29 0.001 30.5 2.0 29 248-276 27-55 (208)
8 2h5n_A Hypothetical protein PG 24.6 2.6E+02 0.0089 22.1 8.7 84 161-262 6-91 (133)
9 3lk5_A Geranylgeranyl pyrophos 22.0 2E+02 0.0068 27.1 7.0 122 138-265 174-327 (380)
10 3lmd_A Geranylgeranyl pyrophos 21.6 82 0.0028 29.6 4.3 119 138-265 159-307 (360)
11 3tc1_A Octaprenyl pyrophosphat 20.4 1.9E+02 0.0064 26.5 6.4 120 137-264 120-265 (315)
No 1
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=82.97 E-value=7.1 Score=36.01 Aligned_cols=80 Identities=11% Similarity=0.194 Sum_probs=64.1
Q ss_pred HHhcccCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhcccCChhhHhhHHhHhcc
Q psy7945 185 KIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSG 264 (288)
Q Consensus 185 kl~e~~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk~dl~~eqke~L~~Llk~ 264 (288)
.+-+.+|+-.+...+..++++|-.|.-..++.+|..+..=... -.=-.-+-+-+|+|+..|...+++.|+..|...+..
T Consensus 168 ~iL~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~-~skSlkFakLll~~itky~~~i~~~~~~~L~~~l~~ 246 (264)
T 2ilr_A 168 QILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLA-ATTSMAYAKLMLTVMTKYQANITETQRLGLAMALEP 246 (264)
T ss_dssp HHHHSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC------CCSHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHCS
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHH-hhcccHHHHHHHHHHHHhHHhcCHHHHHHHHHHHHh
Confidence 3446799999999999999999999999999999999742211 111234788899999999999999999989888765
Q ss_pred C
Q psy7945 265 L 265 (288)
Q Consensus 265 ~ 265 (288)
.
T Consensus 247 n 247 (264)
T 2ilr_A 247 N 247 (264)
T ss_dssp S
T ss_pred h
Confidence 3
No 2
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=31.93 E-value=73 Score=29.41 Aligned_cols=120 Identities=10% Similarity=0.073 Sum_probs=69.6
Q ss_pred ChHHHHHHHH------HHHHHhhcccCCCCCceeeccCCCCHHHHHHHHHHHHHHHhc-c--cCCchHHHHHHHH--Hhh
Q psy7945 137 DPKIKQMYEG------VRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAE-M--EYNGANSIFLRIL--LDK 205 (288)
Q Consensus 137 ~pkVvevY~~------vG~~Ls~YrSGklPKafKiiP~l~nWeeiL~lTaaaLlkl~e-~--~y~g~~S~flr~L--ldK 205 (288)
++++++++.. .|+++.-+..+.. -++...|.++...-.|+|+..|- + -..|+..-....| +-.
T Consensus 131 ~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~------~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~ 204 (334)
T 3rmg_A 131 NYEIIRLVSSLGQKLAEGELLQLSNVSNH------SFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGE 204 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4667776643 4777777666542 24555555555544555554431 1 1234333233332 456
Q ss_pred ccCChHHHHHHHHHHhHhcc-----------ccCCCCchHHH---------HHHHHHHHHhcccCChhhHhhHHhHhccC
Q psy7945 206 KYALPYRVVDAIVFHFLRFE-----------REDRELPVLWH---------QSLLTFAQRYKQDTSAQNRGKPCSIYSGL 265 (288)
Q Consensus 206 KYaLP~rvidalV~hF~rF~-----------~~~~~LPVlWH---------QsLL~FvqrYk~dl~~eqke~L~~Llk~~ 265 (288)
..++-||+.|.+.++| .-. +.+..+|++.. +.|.....+ ...++++++.++++++..
T Consensus 205 ~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~--~~~~~~~~~~v~~~i~~~ 281 (334)
T 3rmg_A 205 YIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKE--GTATPDEIVRLIEFTKDN 281 (334)
T ss_dssp HHHHHHHHHHHHHTTS-CC------CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcC--CCCCHHHHHHHHHHHHHc
Confidence 6789999999999999 421 13568999862 223333322 457788888888877653
No 3
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=31.25 E-value=54 Score=32.27 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhcccCChhhHhhHHhHhcc------CCCC--CCCCCccCCCcCC
Q psy7945 210 PYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSG------LNPI--QPLPWKYDGNFRA 281 (288)
Q Consensus 210 P~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk~dl~~eqke~L~~Llk~------~~~~--~~~p~~~~~~~~~ 281 (288)
||.++|.+..+|++......++ ++..++++..+++++++++ +..+ .+++-.+.|.+|.
T Consensus 510 ~Y~~~D~~l~~~~~~~~~~~~i--------------~~~~~~~~~v~~~~~~~~~~~~KR~~~p~~~~v~~~~~~~~~r~ 575 (590)
T 3n05_A 510 DYPVLDAILELYVDRDTGADAI--------------VAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRL 575 (590)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHH--------------HHTTCCHHHHHHHHHHHHHTHHHHHSSCCCCCCSSSSSCTTSCC
T ss_pred CHHHHHHHHHHHHHcCCCHHHH--------------HHcCCCHHHHHHHHHHHHhchhhhccCCCCceecCCCCCCCccC
Confidence 8999999999988743322111 1135778888888888743 3333 3466778899999
Q ss_pred CccccC
Q psy7945 282 PSVEMW 287 (288)
Q Consensus 282 ~~~~~~ 287 (288)
|+.--|
T Consensus 576 p~~~~~ 581 (590)
T 3n05_A 576 PITNRW 581 (590)
T ss_dssp CSSCCC
T ss_pred cccCCC
Confidence 998766
No 4
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=29.97 E-value=78 Score=29.53 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=69.9
Q ss_pred HHHHHHHH------HHHHHhhcccCCCCCceeeccCCCCHHHHHHHHHHHHHHHh-cc--cCCchHHHHHHHH--Hhhcc
Q psy7945 139 KIKQMYEG------VRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIA-EM--EYNGANSIFLRIL--LDKKY 207 (288)
Q Consensus 139 kVvevY~~------vG~~Ls~YrSGklPKafKiiP~l~nWeeiL~lTaaaLlkl~-e~--~y~g~~S~flr~L--ldKKY 207 (288)
++++++.. .|+++.-+-.+.. -++...|.++...-.++|+..| .+ -..|+..-....| +-+..
T Consensus 143 ~~~~~~~~~~~~l~~GQ~~dl~~~~~~------~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~l 216 (352)
T 3nf2_A 143 RATRRLTKASRSLIDGQAQDISYEHRD------RVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHL 216 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCS------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC------CCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 55665533 4677766555542 3455555555554455554443 11 1334443333333 45677
Q ss_pred CChHHHHHHHHHHhHhc-----------cccCCCCchHHHHHH-----HHHHHHhcc--------cCChhhHhhHHhHhc
Q psy7945 208 ALPYRVVDAIVFHFLRF-----------EREDRELPVLWHQSL-----LTFAQRYKQ--------DTSAQNRGKPCSIYS 263 (288)
Q Consensus 208 aLP~rvidalV~hF~rF-----------~~~~~~LPVlWHQsL-----L~FvqrYk~--------dl~~eqke~L~~Llk 263 (288)
++-||+.|.+.++|-.- .+.+..+||+..-.- -.+...|+. .+++++.+.++++++
T Consensus 217 G~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~ 296 (352)
T 3nf2_A 217 GLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIE 296 (352)
T ss_dssp HHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHH
Confidence 89999999999998421 224678999865321 112233332 578888888888886
Q ss_pred cC
Q psy7945 264 GL 265 (288)
Q Consensus 264 ~~ 265 (288)
..
T Consensus 297 ~~ 298 (352)
T 3nf2_A 297 EA 298 (352)
T ss_dssp HT
T ss_pred HC
Confidence 54
No 5
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=29.73 E-value=56 Score=25.43 Aligned_cols=73 Identities=8% Similarity=0.145 Sum_probs=30.1
Q ss_pred HHHHHHhcccCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCC-CchHHHHHHHHHHHHhcccCChhhHhhHH
Q psy7945 181 AALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRE-LPVLWHQSLLTFAQRYKQDTSAQNRGKPC 259 (288)
Q Consensus 181 aaLlkl~e~~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~-LPVlWHQsLL~FvqrYk~dl~~eqke~L~ 259 (288)
..|..+|....+..+.-||++|++++- ...+..++..|....++.+. ..+ .=.....||++|+++|.
T Consensus 58 ~~l~~~~~~~~~~~~~nfl~ll~~~~R---l~~l~~I~~~f~~l~~~~~~~~~a---------~V~SA~~Ls~~q~~~l~ 125 (134)
T 1abv_A 58 ESFIAVCGEQLDENGQNLIRVMAENGR---LNALPDVLEQFIHLRAVSEATAEV---------DVISAAALSEQQLAKIS 125 (134)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHHTTC---GGGHHHHHHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHCCeeEE---------EEEecCCCCHHHHHHHH
Confidence 445567765677778889999999884 23455666666654443221 100 00123468999999999
Q ss_pred hHhccC
Q psy7945 260 SIYSGL 265 (288)
Q Consensus 260 ~Llk~~ 265 (288)
+.+.+.
T Consensus 126 ~~L~~~ 131 (134)
T 1abv_A 126 AAMEKR 131 (134)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 887653
No 6
>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*
Probab=26.19 E-value=29 Score=30.60 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=25.4
Q ss_pred ccCChhhHhhHHhHhccCCCCCCCCCcc
Q psy7945 248 QDTSAQNRGKPCSIYSGLNPIQPLPWKY 275 (288)
Q Consensus 248 ~dl~~eqke~L~~Llk~~~~~~~~p~~~ 275 (288)
+-||+++.++|...++.|..|+|+|-+-
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~h~~~~~~c 50 (211)
T 3k3k_A 23 SELTPEERSELKNSIAEFHTYQLDPGSC 50 (211)
T ss_dssp SSCCHHHHHHHHHHHHHHSCCCCCTTEE
T ss_pred CcCCHHHHHHHHHHHHHHhccCCCCCeE
Confidence 4699999999999999999999999764
No 7
>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}
Probab=26.03 E-value=29 Score=30.46 Aligned_cols=29 Identities=7% Similarity=-0.042 Sum_probs=25.3
Q ss_pred ccCChhhHhhHHhHhccCCCCCCCCCccC
Q psy7945 248 QDTSAQNRGKPCSIYSGLNPIQPLPWKYD 276 (288)
Q Consensus 248 ~dl~~eqke~L~~Llk~~~~~~~~p~~~~ 276 (288)
..||+++.+.|...++.|+.|+|+|-+-.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~h~~~~~~c~ 55 (208)
T 3jrs_A 27 SDLTQDEFTQLSQSIAEFHTYQLGNGRCS 55 (208)
T ss_dssp -CCCHHHHHHHHHHHHHHSCCCCCTTEEE
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCCCeEe
Confidence 56999999999999999999999997643
No 8
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=24.64 E-value=2.6e+02 Score=22.06 Aligned_cols=84 Identities=7% Similarity=0.003 Sum_probs=55.7
Q ss_pred CceeeccCCCCHHHHHHHHHHHHHHHhc--ccCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCCchHHHHH
Q psy7945 161 KAFKIVPKLRNWEQILYVTAAALLKIAE--MEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQS 238 (288)
Q Consensus 161 KafKiiP~l~nWeeiL~lTaaaLlkl~e--~~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQs 238 (288)
|...|.| .|=.+++. ..+.+.++|. -.++..---+++.++.+ |+|+-.-.+.+...|.++.
T Consensus 6 ~~~~~~~--~~~~~l~a-~~aLl~~VA~ADG~v~~~E~~~l~~~l~~-lgl~~~e~~~l~~~~~~~~------------- 68 (133)
T 2h5n_A 6 QSLNIMT--FSGQELTA-IIKMAKSMVMADGKIKPAEIAVMTREFMR-FGILQDQVDLLLKASDSIE------------- 68 (133)
T ss_dssp CCCCCCC--CCHHHHHH-HHHHHHHHHHTTSCCCHHHHHHHHHHHGG-GTCCHHHHHHHHHHHTTSC-------------
T ss_pred ccccCCC--CccHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHhcc-------------
Confidence 4445555 44456666 3444445554 45888888899999999 9999999999999885111
Q ss_pred HHHHHHHhcccCChhhHhhHHhHh
Q psy7945 239 LLTFAQRYKQDTSAQNRGKPCSIY 262 (288)
Q Consensus 239 LL~FvqrYk~dl~~eqke~L~~Ll 262 (288)
.-.+++.++. ++.++|..+++.+
T Consensus 69 ~~~~~~~~~~-~~~e~r~~ll~~L 91 (133)
T 2h5n_A 69 ASQAVALIAR-MDEERKKYVASYL 91 (133)
T ss_dssp HHHHHHHHHT-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHH
Confidence 1222333333 6788888888766
No 9
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=21.98 E-value=2e+02 Score=27.10 Aligned_cols=122 Identities=10% Similarity=0.118 Sum_probs=71.2
Q ss_pred hHHHHHHHH------HHHHHhhcccCCCCCceeeccCCCCHHHHHHHHHHHH-HHH-hcc--cCCchHHHHHHHH--Hhh
Q psy7945 138 PKIKQMYEG------VRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAAL-LKI-AEM--EYNGANSIFLRIL--LDK 205 (288)
Q Consensus 138 pkVvevY~~------vG~~Ls~YrSGklPKafKiiP~l~nWeeiL~lTaaaL-lkl-~e~--~y~g~~S~flr~L--ldK 205 (288)
.++++++.. .|++|.-+..+.. .++...+.++...-.|+| +.. |.+ -..|+..-.+..| +-.
T Consensus 174 ~~~~~~~~~~~~~~~~GQ~lDl~~~~~~------~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~ 247 (380)
T 3lk5_A 174 ARTRDAWRGMRTEVIGGQLLDIYLESHA------NESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGH 247 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT------CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 356666643 2888876655432 234444444444334554 222 222 1234433333333 446
Q ss_pred ccCChHHHHHHHHHHhHhc-----------cccCCCCchHHHHHH---------HHHHHHhcccCChhhHhhHHhHhccC
Q psy7945 206 KYALPYRVVDAIVFHFLRF-----------EREDRELPVLWHQSL---------LTFAQRYKQDTSAQNRGKPCSIYSGL 265 (288)
Q Consensus 206 KYaLP~rvidalV~hF~rF-----------~~~~~~LPVlWHQsL---------L~FvqrYk~dl~~eqke~L~~Llk~~ 265 (288)
..++-||+.|.+.++|-.- ++.+..+||+..-.- -.+...|+...++++.+.++++++..
T Consensus 248 ~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~ 327 (380)
T 3lk5_A 248 DIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRAT 327 (380)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHc
Confidence 6788999999999998531 124678999844322 12445566778888888888888754
No 10
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=21.55 E-value=82 Score=29.61 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=67.0
Q ss_pred hHHHHHHH------HHHHHHhhcccCCCCCceeeccCCCCHHHHHHHHHHHHHHHh-cc--cCCchHHHHHHHH--Hhhc
Q psy7945 138 PKIKQMYE------GVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIA-EM--EYNGANSIFLRIL--LDKK 206 (288)
Q Consensus 138 pkVvevY~------~vG~~Ls~YrSGklPKafKiiP~l~nWeeiL~lTaaaLlkl~-e~--~y~g~~S~flr~L--ldKK 206 (288)
+++++++. -.|+++.-+-.++. +++..|.++...-.++|+.+| .+ -..|+..-.+..| +-..
T Consensus 159 ~~~~~~~~~~~~~~~~GQ~ldl~~~~~~-------~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~ 231 (360)
T 3lmd_A 159 TDTVAHFAETFGELVTGQMRETVGPRDT-------DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAA 231 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTS-------CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCC-------CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555553 24777777665542 455555555555455555443 11 2334433333333 4567
Q ss_pred cCChHHHHHHHHHHhHhc-----------cccCCCCchHHH--------HHHHHHHHHhcccCChhhHhhHHhHhccC
Q psy7945 207 YALPYRVVDAIVFHFLRF-----------EREDRELPVLWH--------QSLLTFAQRYKQDTSAQNRGKPCSIYSGL 265 (288)
Q Consensus 207 YaLP~rvidalV~hF~rF-----------~~~~~~LPVlWH--------QsLL~FvqrYk~dl~~eqke~L~~Llk~~ 265 (288)
.++-||+.|.+.++|-.- .+.+..+|++.. +.|..... +...++++++.++++++..
T Consensus 232 lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~--~~~~~~~~~~~~~~ll~~~ 307 (360)
T 3lmd_A 232 VGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILT--GPLEDDETVNHVLELLSQS 307 (360)
T ss_dssp HHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCS--SCCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHcCCchHHHHHHHHc--CCCCCHHHHHHHHHHHHHC
Confidence 889999999999999532 123568999863 22222222 1345666677776666543
No 11
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=20.43 E-value=1.9e+02 Score=26.51 Aligned_cols=120 Identities=11% Similarity=0.106 Sum_probs=66.5
Q ss_pred ChHHHHHHHH------HHHHHhhcccCCCCCceeeccCCCCHHHHHHHHHHHHHHHh-cc--cCCchHHHHHHHHHhhcc
Q psy7945 137 DPKIKQMYEG------VRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIA-EM--EYNGANSIFLRILLDKKY 207 (288)
Q Consensus 137 ~pkVvevY~~------vG~~Ls~YrSGklPKafKiiP~l~nWeeiL~lTaaaLlkl~-e~--~y~g~~S~flr~LldKKY 207 (288)
++++++++.. .|+++.-+..+.. -|+...|.++...-.++|+.+| .+ -.+|+..--+ .-+-...
T Consensus 120 ~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~------~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l-~~~g~~l 192 (315)
T 3tc1_A 120 GELIAQALSNAVLRLSRGEIEDVFVGECF------NSDKQKYWRILEDKTAHFIEASLKSMAILLNKDAKIY-ADFGLNF 192 (315)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSC------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCHHHH-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCCC------CCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHH-HHHHHHH
Confidence 3667776643 5777776655542 3455555555544445554433 11 1233331111 1245667
Q ss_pred CChHHHHHHHHHHhHhc-----------cccCCCCchHHHHHH------HHHHHHhcccCChhhHhhHHhHhcc
Q psy7945 208 ALPYRVVDAIVFHFLRF-----------EREDRELPVLWHQSL------LTFAQRYKQDTSAQNRGKPCSIYSG 264 (288)
Q Consensus 208 aLP~rvidalV~hF~rF-----------~~~~~~LPVlWHQsL------L~FvqrYk~dl~~eqke~L~~Llk~ 264 (288)
++-||+.|.+.++|-.- .+.+..+|++..-.- -.+...|+.. ++++++.++++++.
T Consensus 193 G~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~-~~~~~~~i~~li~~ 265 (315)
T 3tc1_A 193 GMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLISYFKQD-SHEIIEWTKEKFKQ 265 (315)
T ss_dssp HHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTTSCHHHHHHHHHTTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHhCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 89999999999998532 113567998854211 1233344555 66777777777654
Done!