Query psy7945
Match_columns 288
No_of_seqs 191 out of 281
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 22:50:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7945.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7945hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2abka_ a.96.1.1 (A:) Endonucl 33.3 1.1E+02 0.0078 24.2 12.8 129 89-246 48-186 (211)
2 d1pbya1 a.3.1.7 (A:1-85) Quino 22.7 39 0.0029 23.8 3.8 43 232-276 33-75 (85)
3 d1ayia_ a.28.2.1 (A:) ImmE7 pr 21.5 30 0.0022 25.1 3.0 29 198-226 18-46 (86)
4 d1u6za1 a.211.1.5 (A:313-509) 21.1 41 0.003 26.4 4.0 50 133-188 82-131 (197)
5 d1eaqa_ b.2.5.6 (A:) Acute mye 20.0 15 0.0011 28.4 0.9 16 152-167 28-44 (124)
6 d2oyoa1 a.152.1.3 (A:10-195) U 19.3 1.7E+02 0.013 21.8 8.2 54 202-261 90-146 (186)
7 d2hk6a1 c.92.1.1 (A:2-310) Fer 18.9 11 0.00082 32.3 -0.0 48 214-265 18-73 (309)
8 d1g7sa2 b.43.3.1 (A:460-587) I 17.5 24 0.0018 26.6 1.7 32 239-270 96-127 (128)
9 d1h8ba_ a.39.1.7 (A:) alpha-Ac 15.9 39 0.0029 23.7 2.4 29 248-276 31-59 (73)
10 d1qusa_ d.2.1.6 (A:) 36 kDa so 15.5 47 0.0034 28.9 3.3 63 203-265 105-167 (322)
No 1
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=33.34 E-value=1.1e+02 Score=24.24 Aligned_cols=129 Identities=15% Similarity=0.084 Sum_probs=70.8
Q ss_pred HHHHHHhhcCCCCCCcchHHHHHHHhhhhhhhhhcccccccccccCCCChHHHHHHHHHHHHHhhcccCCCCCceeeccC
Q psy7945 89 EKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPK 168 (288)
Q Consensus 89 e~~l~~Fm~~~~~~~~tLaDiI~eKi~ek~~~~~~~~~~~~~~~~~~l~pkVvevY~~vG~~Ls~YrSGklPKafKiiP~ 168 (288)
.+++++|+... .|..++......+-+.-... .++...-.+-...+...+.....|.+|..+
T Consensus 48 ~~~~~~l~~~~----~t~~~la~a~~~~l~~~i~~----------~G~y~~Ka~~l~~~a~~i~~~~~g~~p~~~----- 108 (211)
T d2abka_ 48 NKATAKLYPVA----NTPAAMLELGVEGVKTYIKT----------IGLYNSKAENIIKTCRILLEQHNGEVPEDR----- 108 (211)
T ss_dssp HHHHHHHTTTC----CSHHHHHHHHHHHHHHHHTT----------STTHHHHHHHHHHHHHHHHHHTTTSCCSCH-----
T ss_pred HHHHHHHHHhc----cChHHHHhhhHhHhHHHHHH----------hhhhhhHHHHHHHHHHHHHHHhcCchhHHH-----
Confidence 44555555432 36666655544444433322 234333334445666666666788888865
Q ss_pred CCCHHHHHHHH------HHHHHHHh-cccCCchHHHHHHHHHhhc---cCChHHHHHHHHHHhHhccccCCCCchHHHHH
Q psy7945 169 LRNWEQILYVT------AAALLKIA-EMEYNGANSIFLRILLDKK---YALPYRVVDAIVFHFLRFEREDRELPVLWHQS 238 (288)
Q Consensus 169 l~nWeeiL~lT------aaaLlkl~-e~~y~g~~S~flr~LldKK---YaLP~rvidalV~hF~rF~~~~~~LPVlWHQs 238 (288)
++++.|. |.|++-.+ ..|.-.--....|++--=. ..=+.++-..+..-+ ....|.-|||.
T Consensus 109 ----~~L~~LpGVG~~TA~~Il~~a~~~p~~~vD~nv~Rv~~R~g~~~~~~~~~~~~~~~~~~------p~~~~~~~~~~ 178 (211)
T d2abka_ 109 ----AALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVV------PAEFKVDCHHW 178 (211)
T ss_dssp ----HHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSCCSSHHHHHHHHHHHS------CGGGTTTHHHH
T ss_pred ----HHHHHHHhhchHHHHHHHHHHhcCccccccHHHHHHHHHhccCccchhhHHHHHHhhcC------ccccHHHHHHH
Confidence 5666665 77776665 4566555666666653211 111333333333222 23456779999
Q ss_pred HHHHHHHh
Q psy7945 239 LLTFAQRY 246 (288)
Q Consensus 239 LL~FvqrY 246 (288)
|..|-+.+
T Consensus 179 l~~~G~~v 186 (211)
T d2abka_ 179 LILHGRYT 186 (211)
T ss_dssp HHHHHHHT
T ss_pred HHHHhhhh
Confidence 99997764
No 2
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=22.73 E-value=39 Score=23.81 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHHHhcccCChhhHhhHHhHhccCCCCCCCCCccC
Q psy7945 232 PVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSGLNPIQPLPWKYD 276 (288)
Q Consensus 232 PVlWHQsLL~FvqrYk~dl~~eqke~L~~Llk~~~~~~~~p~~~~ 276 (288)
+--|...+..-++.|...|+++++..+.+-|-.+. |+.|.+-.
T Consensus 33 ~~~W~~~V~~M~~~~Ga~l~~~e~~~Iv~YLa~~y--G~~p~e~~ 75 (85)
T d1pbya1 33 PEGWDMTVTRMMRNHGVALEPEERAAIVRHLSDTR--GLSLAETE 75 (85)
T ss_dssp HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHS--CCCSGGGT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc--CCCccccc
Confidence 44599999999999999999999999999997766 35555443
No 3
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=21.53 E-value=30 Score=25.13 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=23.2
Q ss_pred HHHHHHhhccCChHHHHHHHHHHhHhccc
Q psy7945 198 FLRILLDKKYALPYRVVDAIVFHFLRFER 226 (288)
Q Consensus 198 flr~LldKKYaLP~rvidalV~hF~rF~~ 226 (288)
||+-+..-.++..-..+|.||.||.+-..
T Consensus 18 fl~~i~~~~~~~~e~~~d~l~~hF~~ite 46 (86)
T d1ayia_ 18 LLKEIEKENVAATDDVLDVLLEHFVKITE 46 (86)
T ss_dssp HHHHHHHHHTSSSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHHc
Confidence 56666666777778899999999998655
No 4
>d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.06 E-value=41 Score=26.43 Aligned_cols=50 Identities=12% Similarity=0.319 Sum_probs=31.3
Q ss_pred cCCCChHHHHHHHHHHHHHhhcccCCCCCceeeccCCCCHHHHHHHHHHHHHHHhc
Q psy7945 133 IDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAE 188 (288)
Q Consensus 133 ~~~l~pkVvevY~~vG~~Ls~YrSGklPKafKiiP~l~nWeeiL~lTaaaLlkl~e 188 (288)
++++.++=+.+- -.|.+|.+||+|+.. ++.+..|..--...-++||+||.
T Consensus 82 l~Gfs~~E~~~i----A~l~~~hrk~~~~~~--~~~~~~~~~~~~~~l~~iLRLA~ 131 (197)
T d1u6za1 82 LPGFNQEQQLMM----ATLVRYHRKAIKLDD--LPRFTLFKKKQFLPLIQLLRLGV 131 (197)
T ss_dssp CTTCCHHHHHHH----HHHHHTSSSCCCCTT--CCCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH----HHHHHHhcCCCCccc--ccccchhhHHHHHHHHHHHHHHH
Confidence 456666554433 346799999999743 44455554444444667888885
No 5
>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.97 E-value=15 Score=28.43 Aligned_cols=16 Identities=56% Similarity=0.949 Sum_probs=14.2
Q ss_pred hhcccCC-CCCceeecc
Q psy7945 152 SKYRSGK-LPKAFKIVP 167 (288)
Q Consensus 152 s~YrSGk-lPKafKiiP 167 (288)
+||||.| ||-+||++-
T Consensus 28 ~HWRsNKtLp~~Fkvv~ 44 (124)
T d1eaqa_ 28 THWRSNKTLPIAFKVVA 44 (124)
T ss_dssp SEEETTCCCSSCCEEEE
T ss_pred chhccCCccCcceEEEE
Confidence 8999998 899999974
No 6
>d2oyoa1 a.152.1.3 (A:10-195) Uncharacterized protein Dgeo_1446 {Deinococcus geothermalis [TaxId: 68909]}
Probab=19.33 E-value=1.7e+02 Score=21.82 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=34.7
Q ss_pred HHhhccCChHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhc---ccCChhhHhhHHhH
Q psy7945 202 LLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYK---QDTSAQNRGKPCSI 261 (288)
Q Consensus 202 LldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk---~dl~~eqke~L~~L 261 (288)
-.-++.+..-..++++...... ..++ --.+.+|.|+...- +.+++++.++|++.
T Consensus 90 ~~a~~~g~~~~~~~~~~~~~~~-----~~~~-~~e~a~l~~a~~lt~~~~~v~~~~~~~l~~~ 146 (186)
T d2oyoa1 90 AALREFLGDPQKADAVAVNWRH-----ADLT-EREQALAAYAEKLTRHPAEVTAADLEPLRAV 146 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHCGGG-----SCCC-HHHHHHHHHHHHHHHCGGGCCGGGGHHHHHT
T ss_pred HHHhhccccchhhhHHHhcccc-----cchH-HHHHHHHHHHHHHHhhhcccCHHHHHHHHHc
Confidence 3345566777777777765432 1122 26788999998874 46777777777653
No 7
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis [TaxId: 1423]}
Probab=18.94 E-value=11 Score=32.29 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHHHHHHhHhccccCCCCchHHHHHHHHHHHHhc--------ccCChhhHhhHHhHhccC
Q psy7945 214 VDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYK--------QDTSAQNRGKPCSIYSGL 265 (288)
Q Consensus 214 idalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk--------~dl~~eqke~L~~Llk~~ 265 (288)
.+++-.|+..|..+.+.+|-+|.. ..++|+ +.+|..|.++|.+.|+..
T Consensus 18 ~~dV~~yL~~~~~dr~~~~~~~~~----~~~~Y~~igg~SPL~~~t~~qa~~L~~~L~~~ 73 (309)
T d2hk6a1 18 EEDIERYYTHIRRGRKPEPEMLQD----LKDRYEAIGGISPLAQITEQQAHNLEQHLNEI 73 (309)
T ss_dssp GGGHHHHHHHHTTTCCCCHHHHHH----HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHH----HHHHHHHhCCCChHHHHHHHHHHHHHHHHhhc
Confidence 356777888888888888888854 368898 578899999999888653
No 8
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=17.49 E-value=24 Score=26.62 Aligned_cols=32 Identities=9% Similarity=0.005 Sum_probs=21.4
Q ss_pred HHHHHHHhcccCChhhHhhHHhHhccCCCCCC
Q psy7945 239 LLTFAQRYKQDTSAQNRGKPCSIYSGLNPIQP 270 (288)
Q Consensus 239 LL~FvqrYk~dl~~eqke~L~~Llk~~~~~~~ 270 (288)
+-.+-+.|+.+|+.++++.|.++.+-|....|
T Consensus 96 i~~lk~~~~~~l~~~e~~ll~el~~ikr~~~p 127 (128)
T d1g7sa2 96 YHILKEQLSGDLTDEELDLMDKIAEIKRKKNP 127 (128)
T ss_dssp HHTTTSCC---CCHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhcccCC
Confidence 33445568999999999999999877665444
No 9
>d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.95 E-value=39 Score=23.73 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=24.3
Q ss_pred ccCChhhHhhHHhHhccCCCCCCCCCccC
Q psy7945 248 QDTSAQNRGKPCSIYSGLNPIQPLPWKYD 276 (288)
Q Consensus 248 ~dl~~eqke~L~~Llk~~~~~~~~p~~~~ 276 (288)
+.|++||-+-++.-|..++.++-.|-.||
T Consensus 31 ~~L~peqaeyc~~~M~~y~~~~~~~~ayD 59 (73)
T d1h8ba_ 31 RELPPDQAQYCIKRMPAYSGPGSVPGALD 59 (73)
T ss_dssp HHSCHHHHHHHHHHSCSCCCSSCCTTCBC
T ss_pred hhcCHHHHHHHHHHCcccCCCCCCCCccc
Confidence 34999999999999998888877777776
No 10
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=15.53 E-value=47 Score=28.91 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=47.2
Q ss_pred HhhccCChHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhcccCChhhHhhHHhHhccC
Q psy7945 203 LDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSGL 265 (288)
Q Consensus 203 ldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk~dl~~eqke~L~~Llk~~ 265 (288)
++|+|+.|-++|=|+.--=-+|.......||+=--+-|.|-.+-+.++=..|-.+++.+++..
T Consensus 105 ~e~~yGV~~~ii~aiwgvET~yG~~~G~~~v~~aLaTLAf~~~rR~~ff~~EL~a~L~i~~~~ 167 (322)
T d1qusa_ 105 AWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDE 167 (322)
T ss_dssp HHHHHCCCHHHHHHHHHHHHTTTTCCCCEEHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHhhhhchhhhcCCCcchhhhhhhhhcccchhhhhhHHHHHHHHHHHhc
Confidence 689999999999999988888999999999985555555543444456555666667777653
Done!