RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7945
(288 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 4e-05
Identities = 47/258 (18%), Positives = 86/258 (33%), Gaps = 60/258 (23%)
Query: 21 SIFLRILLDKKYALPYRVVDA-------IKEQTTKLHTGDSDNDLDADDDDKSTTSD--- 70
S+ L+ L + LP V+ I E + DN + D +T +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 71 ---DPNFSGDYYNEIIIDPED----EKALSLFMNKHPG--PQLTLRDILREKITEKHTEL 121
+P ++ + + P LSL + + + + + EK +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 122 DTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAF----KIVPKLRN-WEQ-I 175
T S+ ++ L K++ Y R ++ Y +PK F I P L + I
Sbjct: 424 STISIP--SIYLE-LKVKLENEYALHRSIVDHYN---IPKTFDSDDLIPPYLDQYFYSHI 477
Query: 176 LYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLW 235
+ + +E+ ++F + LD F FL E++ R W
Sbjct: 478 GH-------HLKNIEHPERMTLFRMVFLD--------------FRFL--EQKIRHDSTAW 514
Query: 236 HQS-----LLTFAQRYKQ 248
+ S L + YK
Sbjct: 515 NASGSILNTLQQLKFYKP 532
Score = 27.1 bits (59), Expect = 7.7
Identities = 23/159 (14%), Positives = 59/159 (37%), Gaps = 32/159 (20%)
Query: 135 NLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEY--- 191
++D + + +D+LS + AF ++ + + ++L E+++
Sbjct: 6 HMDFETGEHQYQYKDILSVFE-----DAFVDNFDCKDVQDMP----KSILSKEEIDHIIM 56
Query: 192 -----NGANSIFLRILLDKKYALPYRVVDAIV---FHFL----RFEREDRELP----VLW 235
+G +F LL K+ + + V+ ++ + FL + E+ + +
Sbjct: 57 SKDAVSGTLRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 236 HQSLLTFAQRYKQDTSAQNRGKPC-SIYSGLNPIQPLPW 273
L Q + + +R +P + L ++P
Sbjct: 116 RDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKN 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 2e-04
Identities = 39/201 (19%), Positives = 63/201 (31%), Gaps = 80/201 (39%)
Query: 100 PGPQLTLRDILREKITEKHTELDTQFSDAASVQI------DNLDPKIKQMYEGVRDVLSK 153
P P L++ ++ +E++ + + ++ V+I NL V+
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-------------VV-- 379
Query: 154 YRSGKLPKAFKIVPKLRNWEQILYVTAAALLKI-AEMEYNGANSIFLRILLDKKYALPYR 212
SG P++ LY L K A + + RI ++
Sbjct: 380 --SG-PPQS-------------LYGLNLTLRKAKAPSGLDQS-----RIPFSER------ 412
Query: 213 VVDAIVFHFLRFEREDRELPVL--WHQSLLTFA-QRYKQDTSAQN---RGKPCSIYSGLN 266
+ F RF LPV +H LL A +D N K I
Sbjct: 413 ---KLKFS-NRF------LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI----- 457
Query: 267 PIQPLPWKY---DG-NFRAPS 283
P+ Y DG + R S
Sbjct: 458 PV------YDTFDGSDLRVLS 472
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 28.6 bits (64), Expect = 2.6
Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 17/104 (16%)
Query: 3 HSAAALLKIAEMEYNGANSIFLRILLDKKY---ALPYRVVDAIKEQTTKLHTGDSDNDLD 59
H + + NGANS F+ D + AL R DAI H
Sbjct: 449 HRDLLAYLVRRLLENGANSSFVAQAADYRVPVPALLQRPADAIVRPQAAAH--------- 499
Query: 60 ADDDDKSTTSDDPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQ 103
F+ + N ++ AL +
Sbjct: 500 -----PRIPLPCDLFAPERRNSRGVEFGARTALDQLLTDVKAET 538
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Length = 98
Score = 25.9 bits (57), Expect = 7.2
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 140 IKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQI 175
++ M + L + F+IV K RN +
Sbjct: 11 LEDMKKYAETFLEPWFKAPNKGTFQIVYKSRNNSHV 46
>1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase,
R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa}
SCOP: e.3.1.1 PDB: 1g68_A
Length = 271
Score = 26.8 bits (59), Expect = 9.1
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 77 DYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKIT 115
+ + + I D S + K G +TL D +T
Sbjct: 68 NPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFATMT 106
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD,
lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP
GUN; 2.81A {Mus musculus} PDB: 3s24_A
Length = 343
Score = 26.9 bits (58), Expect = 9.2
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 10 KIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKE 44
KI E ++ + +F+R +DK + Y A+
Sbjct: 289 KIIECKFENNSWVFMRQRIDKSFPNAYNTAMAVCN 323
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,559,463
Number of extensions: 278737
Number of successful extensions: 638
Number of sequences better than 10.0: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 27
Length of query: 288
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 195
Effective length of database: 4,105,140
Effective search space: 800502300
Effective search space used: 800502300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)