RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7945
         (288 letters)



>d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter
           jejuni [TaxId: 197]}
          Length = 286

 Score = 27.9 bits (61), Expect = 1.2
 Identities = 10/64 (15%), Positives = 29/64 (45%)

Query: 157 GKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDA 216
           G +  +  ++   ++ + + ++     L +AE E+ G + I     L  ++     ++++
Sbjct: 150 GIVIFSNFLIQNHKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIES 209

Query: 217 IVFH 220
           I F 
Sbjct: 210 ICFV 213


>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 168

 Score = 26.5 bits (58), Expect = 2.8
 Identities = 11/67 (16%), Positives = 21/67 (31%)

Query: 23 FLRILLDKKYALPYRVVDAIKEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSGDYYNEI 82
          FL  LL  K  + Y +V   + + + +    S  ++ +D       S       D     
Sbjct: 19 FLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAH 78

Query: 83 IIDPEDE 89
          +      
Sbjct: 79 LKTSPKP 85


>d1ckma1 b.40.4.6 (A:239-327) RNA guanylyltransferase (mRNA
          capping enzyme) {Chlorella virus PBCV-1 [TaxId: 10506]}
          Length = 89

 Score = 25.5 bits (56), Expect = 3.3
 Identities = 5/35 (14%), Positives = 10/35 (28%)

Query: 10 KIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKE 44
           I E  +      +++   DK  A      +    
Sbjct: 40 SIVECGFADGTWKYIQGRSDKNQANDRLTYEKTLL 74



 Score = 24.7 bits (54), Expect = 4.8
 Identities = 5/33 (15%), Positives = 10/33 (30%)

Query: 185 KIAEMEYNGANSIFLRILLDKKYALPYRVVDAI 217
            I E  +      +++   DK  A      +  
Sbjct: 40  SIVECGFADGTWKYIQGRSDKNQANDRLTYEKT 72


>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite
           (Plasmodium falciparum) [TaxId: 5833]}
          Length = 98

 Score = 25.3 bits (55), Expect = 4.2
 Identities = 8/41 (19%), Positives = 17/41 (41%)

Query: 222 LRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIY 262
           LR    ++++     + +L  ++R   +     RG  CS  
Sbjct: 7   LRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTC 47


>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
           rerio) [TaxId: 7955]}
          Length = 346

 Score = 25.7 bits (55), Expect = 7.5
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 2/94 (2%)

Query: 27  LLDKKYALPYRVVDAIKEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSGDYYNEIIIDP 86
               K AL   VVD  ++       G+       ++   S T D            +  P
Sbjct: 239 RQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPP 298

Query: 87  EDEKALSLFMN--KHPGPQLTLRDILREKITEKH 118
            D+   +  ++   H   +  LRD + +   +  
Sbjct: 299 PDDSDCTCDLSNWHHCADKRGLRDPVLQASWDAA 332


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0445    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,114,627
Number of extensions: 53002
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 13
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.5 bits)