BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7947
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C3J5|DOCK2_MOUSE Dedicator of cytokinesis protein 2 OS=Mus musculus GN=Dock2 PE=1
SV=3
Length = 1828
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 12/117 (10%)
Query: 26 PYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMT 82
P+H V E D L + L ++I+S D Q G++V++K GD + + +
Sbjct: 349 PFHPVS--AENDFLHSLLGKVIASKGDSGGQ---GLWVTMKMLVGDIIQIRKDYPHLVDR 403
Query: 83 NTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
T +ARK+GFPEII+PGDVRND+Y+TL+ +F K++ + ++V + VCTE G +L
Sbjct: 404 TTVVARKLGFPEIIMPGDVRNDIYITLLQGDFDKYTKTTQRNVEVIMCVCTEDGKVL 460
>sp|Q92608|DOCK2_HUMAN Dedicator of cytokinesis protein 2 OS=Homo sapiens GN=DOCK2 PE=1
SV=2
Length = 1830
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 12/114 (10%)
Query: 26 PYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMT 82
P+H V E D L + L ++I+S D Q G++V++K GD + + +
Sbjct: 349 PFHPVT--AENDFLHSLLGKVIASKGDSGGQ---GLWVTMKMLVGDIIQIRKDYPHLVDR 403
Query: 83 NTFIARKMGFPEIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQ----VCTEAG 132
T +ARK+GFPEII+PGDVRND+Y+TL+ +F +KT Q V+ VC E G
Sbjct: 404 TTVVARKLGFPEIIMPGDVRNDIYITLLQGDFDKYNKTTQRNVEVIMCVCAEDG 457
>sp|B2RY04|DOCK5_MOUSE Dedicator of cytokinesis protein 5 OS=Mus musculus GN=Dock5 PE=1
SV=2
Length = 1868
Score = 76.3 bits (186), Expect = 8e-14, Method: Composition-based stats.
Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 11/121 (9%)
Query: 24 LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD----NKTESVAV 79
+SP + + E + L + L ++I++ K+++ K G++VSLK GD K S V
Sbjct: 364 MSPLITSHVIGENEPLTSVLNKVIAA-KEVN-HKGQGLWVSLKLLPGDLTQVQKNFSHLV 421
Query: 80 AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
+ T IARKMGFPEIILPGDVRND+YVTL++ EF K + K ++VT+ V E G +L
Sbjct: 422 DRS-TAIARKMGFPEIILPGDVRNDIYVTLIHGEFDKGKKKTPKNVEVTMSVFDEEGNLL 480
Query: 136 K 136
+
Sbjct: 481 E 481
>sp|Q14185|DOCK1_HUMAN Dedicator of cytokinesis protein 1 OS=Homo sapiens GN=DOCK1 PE=1
SV=2
Length = 1865
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 11/114 (9%)
Query: 26 PYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMT 82
P+ V E D L+ + ++I++ K+++ K G++V+LK GD + E +
Sbjct: 350 PFQPVA--GENDFLQTVINKVIAA-KEVN-HKGQGLWVTLKLLPGDIHQIRKEFPHLVDR 405
Query: 83 NTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAG 132
T +ARK GFPEII+PGDVRND+YVTLV +F K++ K ++VTV V E G
Sbjct: 406 TTAVARKTGFPEIIMPGDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDG 459
>sp|Q9H7D0|DOCK5_HUMAN Dedicator of cytokinesis protein 5 OS=Homo sapiens GN=DOCK5 PE=1
SV=3
Length = 1870
Score = 76.3 bits (186), Expect = 1e-13, Method: Composition-based stats.
Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 11/121 (9%)
Query: 24 LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD----NKTESVAV 79
+SP + + E + L + L ++I++ K+++ K G++VSLK GD K S V
Sbjct: 364 MSPLITSHVIGENEPLTSVLNKVIAA-KEVN-HKGQGLWVSLKLLPGDLTQVQKNFSHLV 421
Query: 80 AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
+ T IARKMGFPEIILPGDVRND+YVTL++ EF K + K ++VT+ V E G +L
Sbjct: 422 DRS-TAIARKMGFPEIILPGDVRNDIYVTLIHGEFDKGKKKTPKNVEVTMSVHDEEGKLL 480
Query: 136 K 136
+
Sbjct: 481 E 481
>sp|Q8BUR4|DOCK1_MOUSE Dedicator of cytokinesis protein 1 OS=Mus musculus GN=Dock1 PE=1
SV=3
Length = 1865
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 11/114 (9%)
Query: 26 PYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMT 82
P+ +V E D L+ + ++I++ K+++ K G++V+LK GD + E +
Sbjct: 350 PFQAVAG--ENDFLQTVINKVIAA-KEVN-HKGQGLWVTLKLLPGDIHQIRKEFPHLVDR 405
Query: 83 NTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAG 132
T +ARK GFPEII+PGDVRND+YVTLV +F K++ K ++VTV V E G
Sbjct: 406 TTAVARKTGFPEIIMPGDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDG 459
>sp|Q8CIQ7|DOCK3_MOUSE Dedicator of cytokinesis protein 3 OS=Mus musculus GN=Dock3 PE=1
SV=1
Length = 2027
Score = 67.0 bits (162), Expect = 6e-11, Method: Composition-based stats.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 9/104 (8%)
Query: 40 ENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMTNTFIARKMGFPEII 96
EN +++ SS K + S G+ +SL+ GD + E+ + I RK+GFP++I
Sbjct: 358 ENIIRK--SSTKYSAPSASHGLIISLQLFRGDMEQIRRENPMIFNRGLAITRKLGFPDVI 415
Query: 97 LPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILK 136
+PGD+RNDLY+TL +F KS K I+VT+ V G ILK
Sbjct: 416 MPGDIRNDLYLTLEKGDFERGGKSVQKNIEVTMYVLYADGEILK 459
>sp|Q8IZD9|DOCK3_HUMAN Dedicator of cytokinesis protein 3 OS=Homo sapiens GN=DOCK3 PE=1
SV=1
Length = 2030
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 9/104 (8%)
Query: 40 ENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMTNTFIARKMGFPEII 96
EN +++ SS K + S G+ +SL+ GD + E+ + I RK+GFP++I
Sbjct: 358 ENIIRK--SSAKYSAPSASHGLIISLQLLRGDMEQIRRENPMIFNRGLAITRKLGFPDVI 415
Query: 97 LPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILK 136
+PGD+RNDLY+TL +F KS K I+VT+ V G ILK
Sbjct: 416 MPGDIRNDLYLTLEKGDFERGGKSVQKNIEVTMYVLYADGEILK 459
>sp|Q8N1I0|DOCK4_HUMAN Dedicator of cytokinesis protein 4 OS=Homo sapiens GN=DOCK4 PE=1
SV=3
Length = 1966
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 40 ENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMTNTFIARKMGFPEII 96
EN +K+L + S +AG+ VSL+ GD + E +V I RK+GF II
Sbjct: 338 ENIIKKLNARYNLTGS--NAGLAVSLQLLHGDIEQIRREYSSVFSHGVSITRKLGFSNII 395
Query: 97 LPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILKVNAEFKSSD 145
+PG++RNDLY+T+ EF KS + ++VT+ + +G LK F S +
Sbjct: 396 MPGEMRNDLYITIERGEFEKGGKSVARNVEVTMFIVDSSGQTLKDFISFGSGE 448
>sp|P59764|DOCK4_MOUSE Dedicator of cytokinesis protein 4 OS=Mus musculus GN=Dock4 PE=1
SV=1
Length = 1978
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 40 ENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMTNTFIARKMGFPEII 96
EN +K+L + S +AG+ VSL+ GD + E +V I RK+GF +II
Sbjct: 338 ENIIKKLNARYNLTGS--NAGLAVSLQLLHGDIEQIRREYSSVFSHGVSITRKLGFSDII 395
Query: 97 LPGDVRNDLYVTLVNAEFKSSDKTIQVTVQV 127
+PG++RNDLY+T+ EF+ K++ V+V
Sbjct: 396 MPGEMRNDLYITVERGEFEKGGKSVARNVEV 426
>sp|P94461|PRIA_BACSU Primosomal protein N' OS=Bacillus subtilis (strain 168) GN=priA
PE=3 SV=2
Length = 805
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 38 NLENTLKRLISSLK----DISSQKSAGMYVSLKFHCGDNKTESVAVAMTNTFIARKMGFP 93
+E L +++ S + D+ + G + L G+ K + + + IA+ + FP
Sbjct: 567 RVEEELTKVLPSARVIRMDVDTTSRKGAHEKLLSAFGEGKAD---ILLGTQMIAKGLDFP 623
Query: 94 EIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQVCTEAG-------VILKVNAEFKSSDK 146
+ L G + D TL +F+S++KT Q+ QV AG VI++ + S
Sbjct: 624 NVTLVGVLSAD--TTLHIPDFRSAEKTFQLLTQVSGRAGRHEKPGHVIIQT---YTPSHY 678
Query: 147 TIQVT 151
+IQ+T
Sbjct: 679 SIQLT 683
>sp|B9E9B4|THIG_MACCJ Thiazole synthase OS=Macrococcus caseolyticus (strain JCSC5402)
GN=thiG PE=3 SV=1
Length = 255
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 66 KFHCGDNKTESVAVAMTN--TFIARKMGFPEIILPGDVRN---DLYVTLVN-AEFKSSDK 119
KF GD + E+V + TN TF R+M + LP + + D Y+T N A K++++
Sbjct: 19 KFENGDIQREAVDASETNALTFAVRRMNLYDKDLPNPLESVDLDKYITFPNTAGAKTAEE 78
Query: 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTI 148
+++ ++ AG+ + E DKT+
Sbjct: 79 AVKIA-EIARAAGMCDMIKVEIIGDDKTL 106
>sp|A6M2Y4|MURB_CLOB8 UDP-N-acetylenolpyruvoylglucosamine reductase OS=Clostridium
beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=murB
PE=3 SV=1
Length = 304
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 30 VVKLCEKDNLENTLKRLISS----LKDISSQKSAGMYVSLKFHCGDNKTESVAVAMT 82
V+KLCE + +E ++I+ LKD+S + G +F CG + AV M
Sbjct: 84 VIKLCELNKIECIGNKIIAECGALLKDVSKAATEGSLAGFQFACGIPGSVGGAVFMN 140
>sp|A2VCZ5|MD13L_DANRE Mediator of RNA polymerase II transcription subunit 13-like
OS=Danio rerio GN=zgc:153454 PE=2 SV=1
Length = 2102
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 6 KKKKKKKKKKKKKKNVRPLSPYHSVVKLCEK 36
K K +K +K K+ RPL+P+H LCE+
Sbjct: 453 KHKMAEKLEKGDKQQKRPLTPFHHRSSLCEE 483
>sp|Q6YQW2|RPOC_ONYPE DNA-directed RNA polymerase subunit beta' OS=Onion yellows
phytoplasma (strain OY-M) GN=rpoC PE=3 SV=1
Length = 1353
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 24 LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLK----FHCGDNKTE 75
L+ +V KL E NLE T+K L SL + S QK + L+ FH DNK E
Sbjct: 297 LTGAEAVKKLLENLNLEKTIKVLRKSLSENSKQKRESIIKRLEIIESFHQSDNKPE 352
>sp|Q2NJ16|RPOC_AYWBP DNA-directed RNA polymerase subunit beta' OS=Aster yellows
witches'-broom phytoplasma (strain AYWB) GN=rpoC PE=3
SV=1
Length = 1353
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 24 LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLK----FHCGDNKTE 75
L+ +V KL E NLE T+K L SL + S QK + L+ FH DNK E
Sbjct: 297 LTGAEAVKKLLENLNLEKTIKVLRKSLSENSKQKRESIIKRLEIIESFHQSDNKPE 352
>sp|Q5SWW4|MED13_MOUSE Mediator of RNA polymerase II transcription subunit 13 OS=Mus
musculus GN=Med13 PE=2 SV=1
Length = 2171
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 3 VQKKKKKKKKKKKKKKKNVRPLSPYHSVVKLCEKDNL--ENTLKRLISSLKD 52
V K K +K+ K +K RPL+P+H V + ++ + ++ +RL+ S D
Sbjct: 452 VLPKHKTNEKQDKSEKPQKRPLTPFHHRVSVSDEIGMDTDSASQRLVISAAD 503
>sp|Q91WQ3|SYYC_MOUSE Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2
SV=3
Length = 528
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 33 LCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDNKTESVAVAMTNTFIARKMGF 92
CE N+EN ++S +K + + + G NKT +V + + F A
Sbjct: 249 FCEPGNVENN--GVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTVYLELEKDFAA----- 301
Query: 93 PEIILPGDVRNDLYVTL 109
E++ PGD++N + V L
Sbjct: 302 -EVVHPGDLKNSVEVAL 317
>sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcription subunit 13 OS=Homo
sapiens GN=MED13 PE=1 SV=3
Length = 2174
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 6 KKKKKKKKKKKKKKNVRPLSPYHSVVKLCEKDNL--ENTLKRLISSLKD 52
K K +K++K +K RPL+P+H V + + + ++ +RL+ S D
Sbjct: 455 KHKTNEKQEKSEKPQKRPLTPFHHRVSVSDDVGMDADSASQRLVISAPD 503
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,321,919
Number of Sequences: 539616
Number of extensions: 2145872
Number of successful extensions: 28769
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 27394
Number of HSP's gapped (non-prelim): 938
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)