Query psy7947
Match_columns 173
No_of_seqs 119 out of 150
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 22:52:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1998|consensus 99.9 2.9E-26 6.2E-31 230.6 7.6 132 18-156 179-317 (1548)
2 cd08694 C2_Dock-A C2 domains f 99.8 1.1E-18 2.3E-23 145.7 7.0 60 101-160 1-66 (196)
3 cd08695 C2_Dock-B C2 domains f 99.8 1.2E-18 2.7E-23 144.5 7.1 57 101-157 1-61 (189)
4 cd08679 C2_DOCK180_related C2 99.3 5.4E-12 1.2E-16 101.6 7.2 58 101-158 1-62 (178)
5 PF14429 DOCK-C2: C2 domain in 99.3 3.3E-12 7.2E-17 102.8 4.9 60 97-156 1-66 (184)
6 cd08696 C2_Dock-C C2 domains f 98.8 1.5E-08 3.2E-13 83.7 6.6 57 101-157 1-62 (179)
7 cd08697 C2_Dock-D C2 domains f 98.6 1.2E-07 2.5E-12 78.8 6.3 57 102-158 2-65 (185)
8 KOG2422|consensus 54.9 4.2 9E-05 40.1 0.1 18 4-21 90-107 (665)
9 PF05688 DUF824: Salmonella re 50.7 21 0.00046 23.9 3.0 24 118-141 12-35 (47)
10 TIGR00083 ribF riboflavin kina 45.7 64 0.0014 28.5 6.0 29 82-110 177-210 (288)
11 PF11614 FixG_C: IG-like fold 45.2 43 0.00093 24.8 4.2 45 101-145 18-74 (118)
12 PRK06848 hypothetical protein; 44.1 9.9 0.00021 30.2 0.7 43 119-166 25-67 (139)
13 PF10648 Gmad2: Immunoglobulin 41.3 63 0.0014 23.7 4.5 34 123-156 31-65 (88)
14 PF06375 BLVR: Bovine leukaemi 40.1 9.5 0.00021 31.3 0.0 8 22-29 111-118 (154)
15 smart00634 BID_1 Bacterial Ig- 36.3 35 0.00076 24.3 2.5 21 118-138 17-37 (92)
16 PF01556 CTDII: DnaJ C termina 33.9 30 0.00066 24.3 1.8 49 60-110 16-67 (81)
17 cd03778 MATH_TRAF2 Tumor Necro 31.7 78 0.0017 26.0 4.1 36 105-140 76-115 (164)
18 cd03449 R_hydratase (R)-hydrat 31.1 1.3E+02 0.0027 21.5 4.7 15 120-134 104-118 (128)
19 cd07881 RHD-n_NFAT N-terminal 31.0 1.2E+02 0.0026 25.6 5.0 75 61-135 55-161 (175)
20 PF13115 YtkA: YtkA-like 29.3 92 0.002 21.5 3.6 34 104-139 6-39 (86)
21 PF13860 FlgD_ig: FlgD Ig-like 26.7 91 0.002 21.8 3.3 25 122-147 26-50 (81)
22 PRK08298 cytidine deaminase; V 25.1 33 0.00072 27.3 0.8 39 122-165 24-62 (136)
23 cd03455 SAV4209 SAV4209 is a S 25.0 1.6E+02 0.0035 21.5 4.5 42 89-134 73-114 (123)
24 cd03780 MATH_TRAF5 Tumor Necro 23.4 1.1E+02 0.0024 24.2 3.5 32 104-135 57-91 (148)
25 PRK05578 cytidine deaminase; V 22.8 36 0.00077 26.7 0.6 41 120-165 23-63 (131)
26 PRK12411 cytidine deaminase; P 22.6 36 0.00077 26.8 0.5 41 120-165 23-63 (132)
27 PRK12634 flgD flagellar basal 22.6 1.3E+02 0.0029 25.6 4.0 27 121-148 122-148 (221)
28 PF07887 Calmodulin_bind: Calm 22.4 3.8E+02 0.0083 24.3 7.0 95 57-166 43-156 (299)
29 PRK13344 spxA transcriptional 22.1 21 0.00045 27.8 -0.9 29 75-103 85-120 (132)
30 PRK06655 flgD flagellar basal 21.6 1.3E+02 0.0029 25.7 3.8 26 122-148 127-152 (225)
31 PF02369 Big_1: Bacterial Ig-l 21.2 84 0.0018 23.0 2.3 21 118-138 22-42 (100)
32 PHA02085 hypothetical protein 21.1 1.8E+02 0.0038 22.0 3.9 57 82-153 20-76 (87)
33 TIGR01354 cyt_deam_tetra cytid 21.1 49 0.0011 25.5 1.0 41 120-165 20-60 (127)
34 PF09313 DUF1971: Domain of un 20.1 1.2E+02 0.0026 22.2 2.9 40 101-149 21-62 (82)
No 1
>KOG1998|consensus
Probab=99.93 E-value=2.9e-26 Score=230.55 Aligned_cols=132 Identities=33% Similarity=0.456 Sum_probs=114.9
Q ss_pred hccccceeeeEeeeccccccchHHHHHHHhhccccccccccccEEEEEEeecCCccc---cceeeccccchhhhcCCCCc
Q psy7947 18 KKNVRPLSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDNKT---ESVAVAMTNTFIARKMGFPE 94 (173)
Q Consensus 18 ~~eveh~i~i~~~~~~~E~e~~d~iIrk~i~s~k~~~~~~~~gl~VsLkll~Gdl~q---enP~L~~~~v~itrKlGFpe 94 (173)
+++-+|+++++.+ ..+++++-.++-+.++ ++..+ .++||||++++|+|+..| ++|+||++ .++||||||||
T Consensus 179 ~e~~~~~~~~~~~--e~~~~~l~~~~~~~~~-k~~~~--~~~~l~vs~kll~G~~~q~r~~~p~l~~r-s~itrk~gFp~ 252 (1548)
T KOG1998|consen 179 DEIEQHFILFQEV--ESENDFLPFLISKVIA-KKGLN--AGQGLWVSLKLLPGDIVQIRAERPHLFDR-SAVARKQGFPE 252 (1548)
T ss_pred hhhhhhheecccc--cCcccccchhhhcccc-CcccC--CccceEEEEEEecCchHHHhhhcCchhhh-hHHHhhcCCch
Confidence 6777899998876 4555666555555444 22222 389999999999999999 99999999 99999999999
Q ss_pred cccCCCCCCceeEEeeecee----eccCCceEEEEEEEccCCceeccceEecCCCCCceeEEEEee
Q psy7947 95 IILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCT 156 (173)
Q Consensus 95 vI~Pgd~RNDlYvTL~~GeF----ks~~kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~ 156 (173)
||| ||+||||||||++||| |++++||+|||+|++.+|..+.+||+.|||++.++..++++.
T Consensus 253 vim-gDvRNdlyitL~~gdf~~ggK~t~kNi~vtV~V~ev~G~~l~d~~~~~sG~~~i~~y~s~v~ 317 (1548)
T KOG1998|consen 253 IIM-GDVRNDIYITLIQGDFSKGGKTTFINVEVTVSVLEVDGKQLFDKTESGSGEPYIPEYHSVVL 317 (1548)
T ss_pred hhc-cccccceeeeeeehhhhccccccceeEEEEEEEeecccceehhheeccCCCcccceeeeeee
Confidence 999 9999999999999999 889999999999999999999999999999999999988763
No 2
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=1.1e-18 Score=145.75 Aligned_cols=60 Identities=40% Similarity=0.598 Sum_probs=56.5
Q ss_pred CCCceeEEeeecee----eccCCceEEEEEEEccCCceeccceEecCCCCCceeEEEEe--eeccc
Q psy7947 101 VRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVC--TEAGV 160 (173)
Q Consensus 101 ~RNDlYvTL~~GeF----ks~~kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~--~erg~ 160 (173)
+||||||||++|+| ++++|||||+|+||+++|++|++||+.|||+++++.|+|++ .+++-
T Consensus 1 vRNdLYvtl~~~~f~~~~~s~~rNIeVtv~vr~~~G~~i~~~i~~gsg~~~~se~~S~V~Yh~~~P 66 (196)
T cd08694 1 VRNDLYLTLVQGDFDKGSKTSDKNVEVTVSVCNEDGKIIPGVISLGAGEEPIDEYKSVIYYQVDKP 66 (196)
T ss_pred CCccEEEEeeeeEEcCCCCCCcceEEEEEEEECCCCCCCceeEEcCCCCCcceeEEEEEEeecCCC
Confidence 69999999999999 67799999999999999999999999999999999999999 66653
No 3
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=99.76 E-value=1.2e-18 Score=144.52 Aligned_cols=57 Identities=37% Similarity=0.441 Sum_probs=55.2
Q ss_pred CCCceeEEeeecee----eccCCceEEEEEEEccCCceeccceEecCCCCCceeEEEEeee
Q psy7947 101 VRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTE 157 (173)
Q Consensus 101 ~RNDlYvTL~~GeF----ks~~kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~e 157 (173)
+||||||||++|+| |+++|||||+|+||+++|+++++||++|+|+++++.|+|+++.
T Consensus 1 vRNdlYvtl~~g~f~~~~k~~~rNIeV~v~v~~~~G~~~~~cI~~~~g~~~~se~~S~V~y 61 (189)
T cd08695 1 VRNDLYLTLERGEFEKGGKSTAKNIEVTMVVLDADGQVLKDCISLGSGEPPCSEYRSFVLY 61 (189)
T ss_pred CcccEEEEeeeeEEcCCCCCCcceEEEEEEEEcCCCCCccCCEEcCCCCCccceEEEEEEE
Confidence 69999999999999 5789999999999999999999999999999999999999987
No 4
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=99.30 E-value=5.4e-12 Score=101.60 Aligned_cols=58 Identities=28% Similarity=0.318 Sum_probs=54.9
Q ss_pred CCCceeEEeeeceee---ccCCceEEEEEEEccCCceeccceE-ecCCCCCceeEEEEeeec
Q psy7947 101 VRNDLYVTLVNAEFK---SSDKTIQVTVQVCTEAGVILKVNAE-FKSSDKTIQVTVQVCTEA 158 (173)
Q Consensus 101 ~RNDlYvTL~~GeFk---s~~kNiEVt~~V~~~~G~~Ie~cI~-~gSg~~~vt~w~t~~~er 158 (173)
.||||||++.+|+|. +++|||+|+|+||++||.++++||+ +|+|....++|.|++..+
T Consensus 1 ~rN~LYi~p~~~~~~~~~~~~rNi~v~v~~r~~d~~~~~~~i~~~~~~~~~~s~~~sv~~~~ 62 (178)
T cd08679 1 LRNDLYVYPQSGELSKAKSKGRNIEITVEVRDDDGDIIEPCISAPGSGSELRSEYTSVVYYH 62 (178)
T ss_pred CCccEEEEeeEEEEcCCCCccccEEEEEEEEcCCCCcccccEEEcCCCCccceeEEEEEEcC
Confidence 499999999999993 5699999999999999999999999 999999999999999887
No 5
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=99.28 E-value=3.3e-12 Score=102.78 Aligned_cols=60 Identities=32% Similarity=0.311 Sum_probs=35.5
Q ss_pred cCCCCCCceeEEeeecee----eccCCceEEEEEEEccCCc-eeccceEecCCC-CCceeEEEEee
Q psy7947 97 LPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGV-ILKVNAEFKSSD-KTIQVTVQVCT 156 (173)
Q Consensus 97 ~Pgd~RNDlYvTL~~GeF----ks~~kNiEVt~~V~~~~G~-~Ie~cI~~gSg~-~~vt~w~t~~~ 156 (173)
+|++.||||||+|.+|+| ++++|||+|+|+||+.+|. .+.+||+.+++. +..+.|.|+|.
T Consensus 1 ~~~~~rN~LYv~~~s~~f~k~~k~~~rNi~v~v~lr~~d~~~~~~~~i~~~~~~~~~~~~~~S~v~ 66 (184)
T PF14429_consen 1 PPTDYRNDLYVYPKSGNFSKSKKSSARNIEVTVELRDSDGNIKPLPCIYSRSSGPSFVTSYYSSVY 66 (184)
T ss_dssp ------EEEEEEEEEEE-SSSSSSS---EEEEEEEEETTS--B--S-EE-TTS--S-BS-EE----
T ss_pred CCCceeeeEEEEeCEEEECCCCCCCcccEEEEEEEEeCCCCccccceEECCCCCCCcceEEEEEEE
Confidence 589999999999999999 4569999999999999999 689999999888 89999999886
No 6
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=98.78 E-value=1.5e-08 Score=83.69 Aligned_cols=57 Identities=25% Similarity=0.130 Sum_probs=45.7
Q ss_pred CCCceeEEeeecee---eccCCceEEEEEEEccCCc-eeccceEecCCCC-CceeEEEEeee
Q psy7947 101 VRNDLYVTLVNAEF---KSSDKTIQVTVQVCTEAGV-ILKVNAEFKSSDK-TIQVTVQVCTE 157 (173)
Q Consensus 101 ~RNDlYvTL~~GeF---ks~~kNiEVt~~V~~~~G~-~Ie~cI~~gSg~~-~vt~w~t~~~e 157 (173)
-||||||++.+++| ++++|||+|+|+++++|+. ..-.||+.|+|.+ ..+...|.++=
T Consensus 1 yrN~LYVyp~~~~f~~~~~~~rNI~V~v~l~~~d~~~~~l~~i~~g~~~~~~~~~~~S~V~y 62 (179)
T cd08696 1 YRNLLYVYPQSLNFSNRLGSARNIAVKVQLMSGEDESQALPVIFKGSSPEEFLTEAYTAVTY 62 (179)
T ss_pred CcccEEEeccEEEecCCCCCcCCEEEEEEEEeCCCCCccceEEEeCCCCCccceeEEEEEEE
Confidence 39999999999999 6779999999999996433 2346777888887 77777777764
No 7
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=98.58 E-value=1.2e-07 Score=78.84 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=48.3
Q ss_pred CCceeEEeeecee---e--ccCCceEEEEEEEccCCceec--cceEecCCCCCceeEEEEeeec
Q psy7947 102 RNDLYVTLVNAEF---K--SSDKTIQVTVQVCTEAGVILK--VNAEFKSSDKTIQVTVQVCTEA 158 (173)
Q Consensus 102 RNDlYvTL~~GeF---k--s~~kNiEVt~~V~~~~G~~Ie--~cI~~gSg~~~vt~w~t~~~er 158 (173)
||+|||...++.| | +.+|||+|+|++|++||+..+ +||+.|+|++..+...|.+.--
T Consensus 2 ~N~LYVYP~~l~~~~~k~~~kaRNI~V~V~lrd~D~~~~~~l~~I~~g~g~~~~~~~~s~V~yh 65 (185)
T cd08697 2 KNHLYVYPLHLKYDSQKTFAKARNIAVCIEFRDSDEEDAKPLKCIYYGPGGGFTTSAYAAVLHH 65 (185)
T ss_pred cceEEEcccEEEecccccccccccEEEEEEEEeCCCCcCccceEEecCCCCCcceEEEEEEEEc
Confidence 8999999999999 2 679999999999999987554 5999999998777777776543
No 8
>KOG2422|consensus
Probab=54.89 E-value=4.2 Score=40.12 Aligned_cols=18 Identities=67% Similarity=0.791 Sum_probs=8.0
Q ss_pred hhHHHHHHHHhhhhhccc
Q psy7947 4 QKKKKKKKKKKKKKKKNV 21 (173)
Q Consensus 4 ~~~~~~~~~~~~~~~~ev 21 (173)
+|||||||||+||-..+|
T Consensus 90 ~k~KKK~krkkKk~~~~~ 107 (665)
T KOG2422|consen 90 NKKKKKKKRKKKKSTAEV 107 (665)
T ss_pred cccchhhhhccccccCcc
Confidence 344444444444434443
No 9
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=50.71 E-value=21 Score=23.91 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=20.5
Q ss_pred CCceEEEEEEEccCCceeccceEe
Q psy7947 118 DKTIQVTVQVCTEAGVILKVNAEF 141 (173)
Q Consensus 118 ~kNiEVt~~V~~~~G~~Ie~cI~~ 141 (173)
+-.|.++|.+.|++|+++++.=|.
T Consensus 12 Ge~I~ltVt~kda~G~pv~n~~f~ 35 (47)
T PF05688_consen 12 GETIPLTVTVKDANGNPVPNAPFT 35 (47)
T ss_pred CCeEEEEEEEECCCCCCcCCceEE
Confidence 447999999999999999987654
No 10
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=45.70 E-value=64 Score=28.50 Aligned_cols=29 Identities=31% Similarity=0.668 Sum_probs=19.2
Q ss_pred ccchhhhcCCCCcc-c-cCCC---CCCceeEEee
Q psy7947 82 TNTFIARKMGFPEI-I-LPGD---VRNDLYVTLV 110 (173)
Q Consensus 82 ~~v~itrKlGFpev-I-~Pgd---~RNDlYvTL~ 110 (173)
++-..-|+||||.| | +|.+ +++-+|.+..
T Consensus 177 ~G~~~Gr~lGfPTaNl~~~~~~~~p~~GVYa~~v 210 (288)
T TIGR00083 177 HGQKLGRTLGFPTANIKLKNQVLPLKGGYYVVVV 210 (288)
T ss_pred ecCCCcccccCceEEecCcccccCCCcceEEEEE
Confidence 34455688999975 2 2322 6889997765
No 11
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=45.18 E-value=43 Score=24.78 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=20.4
Q ss_pred CCCceeEEeeecee---------eccCCceEEEEEEEccCCcee--c-cceEecCCC
Q psy7947 101 VRNDLYVTLVNAEF---------KSSDKTIQVTVQVCTEAGVIL--K-VNAEFKSSD 145 (173)
Q Consensus 101 ~RNDlYvTL~~GeF---------ks~~kNiEVt~~V~~~~G~~I--e-~cI~~gSg~ 145 (173)
.|+-+|+.+..|.+ -.+....++++.+...+|..| . +.|.+++|+
T Consensus 18 dr~~ly~~~~dg~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~ 74 (118)
T PF11614_consen 18 DRGPLYRELSDGSIRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGE 74 (118)
T ss_dssp -SS---------SEEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-
T ss_pred cCCCcEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCC
Confidence 47777777777766 345778888899988778777 2 667776655
No 12
>PRK06848 hypothetical protein; Validated
Probab=44.12 E-value=9.9 Score=30.22 Aligned_cols=43 Identities=26% Similarity=0.156 Sum_probs=33.2
Q ss_pred CceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhcc
Q psy7947 119 KTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHD 166 (173)
Q Consensus 119 kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~ 166 (173)
.|..|-..++.+||.+ |.|.|-+..+-=-|+|+||..|.+|+-
T Consensus 25 s~f~VgAa~l~~~G~i-----~~G~NvEnas~~~tiCAEr~Ai~~av~ 67 (139)
T PRK06848 25 DWHHVGAALRTKTGRI-----YAAVHLEAYVGRITVCAEAIAIGKAIS 67 (139)
T ss_pred CCCcEEEEEEeCCCCE-----EEEEEeecCCCCcccCHHHHHHHHHHH
Confidence 4788999999999974 567676665444688999999988753
No 13
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=41.32 E-value=63 Score=23.73 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=26.6
Q ss_pred EEEEEEccCCcee-ccceEecCCCCCceeEEEEee
Q psy7947 123 VTVQVCTEAGVIL-KVNAEFKSSDKTIQVTVQVCT 156 (173)
Q Consensus 123 Vt~~V~~~~G~~I-e~cI~~gSg~~~vt~w~t~~~ 156 (173)
|.+.|+|.+|+++ +....++.|.+....|..++.
T Consensus 31 v~~rv~D~~g~vl~e~~~~a~~g~~~~g~F~~tv~ 65 (88)
T PF10648_consen 31 VNIRVRDGHGEVLAEGFVTATGGAPSWGPFEGTVS 65 (88)
T ss_pred EEEEEEcCCCcEEEEeeEEeccCCCcccceEEEEE
Confidence 4467789999997 777777788888888877663
No 14
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=40.10 E-value=9.5 Score=31.34 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=0.0
Q ss_pred cceeeeEe
Q psy7947 22 RPLSPYHS 29 (173)
Q Consensus 22 eh~i~i~~ 29 (173)
|-..+++.
T Consensus 111 ed~~~~~~ 118 (154)
T PF06375_consen 111 EDIPPVHQ 118 (154)
T ss_dssp --------
T ss_pred ccccccee
Confidence 33344444
No 15
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=36.26 E-value=35 Score=24.31 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=18.0
Q ss_pred CCceEEEEEEEccCCceeccc
Q psy7947 118 DKTIQVTVQVCTEAGVILKVN 138 (173)
Q Consensus 118 ~kNiEVt~~V~~~~G~~Ie~c 138 (173)
.-...|++.|+|++|+++++.
T Consensus 17 ~d~~~i~v~v~D~~Gnpv~~~ 37 (92)
T smart00634 17 SDAITLTATVTDANGNPVAGQ 37 (92)
T ss_pred cccEEEEEEEECCCCCCcCCC
Confidence 357889999999999999973
No 16
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=33.95 E-value=30 Score=24.26 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=27.5
Q ss_pred cEEEEEEeecCCccc-cceeeccc-cchhhhcCCCCccccCCC-CCCceeEEee
Q psy7947 60 GMYVSLKFHCGDNKT-ESVAVAMT-NTFIARKMGFPEIILPGD-VRNDLYVTLV 110 (173)
Q Consensus 60 gl~VsLkll~Gdl~q-enP~L~~~-~v~itrKlGFpevI~Pgd-~RNDlYvTL~ 110 (173)
|-.+++..+.|.--. .-|..... ..-.-+..|||.. .+. .|-||||++.
T Consensus 16 G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~--~~~~~~GdL~v~~~ 67 (81)
T PF01556_consen 16 GGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKP--KGGGKRGDLIVKFE 67 (81)
T ss_dssp -EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEES--SSTTSBEEEEEEEE
T ss_pred CCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcC--CCCCCcCCEEEEEE
Confidence 556777777772222 32332222 2334567899876 454 7999999875
No 17
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=31.70 E-value=78 Score=26.00 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=25.8
Q ss_pred eeEEeeeceeecc---CCceEEEEEEEccCC-ceeccceE
Q psy7947 105 LYVTLVNAEFKSS---DKTIQVTVQVCTEAG-VILKVNAE 140 (173)
Q Consensus 105 lYvTL~~GeFks~---~kNiEVt~~V~~~~G-~~Ie~cI~ 140 (173)
||+.|.+||+-.. .=+.++|+.++|.++ +-+..++.
T Consensus 76 ly~~l~~Ge~D~~L~WPf~~~itl~llDQ~~r~hi~~~~~ 115 (164)
T cd03778 76 LFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFR 115 (164)
T ss_pred EEEEEecCCcCcccCCceeeEEEEEEECCCCCCcceeEEE
Confidence 8999999998332 228899999999864 33444443
No 18
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=31.08 E-value=1.3e+02 Score=21.52 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=7.6
Q ss_pred ceEEEEEEEccCCce
Q psy7947 120 TIQVTVQVCTEAGVI 134 (173)
Q Consensus 120 NiEVt~~V~~~~G~~ 134 (173)
-+.+...+.+++|++
T Consensus 104 ~v~~~~~~~~~~g~~ 118 (128)
T cd03449 104 RVTLETVCTNQNGEV 118 (128)
T ss_pred EEEEEEEEEeCCCCE
Confidence 444555555555544
No 19
>cd07881 RHD-n_NFAT N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes that are mainly involved in cell-cell interaction. Upon de-phosphorylation of the nuclear localization signal, NFAT enters the nucleus and acts as a transcription factor; its export from the nucleus is triggered by phosphorylation via export kinases. NFATs play important roles in mediating the immune response, and are found in T cells, B Cells, NK cells, mast cells, and monocytes. NFATs are also found in various non-hematopoietic cell types, where they play roles in development.
Probab=30.97 E-value=1.2e+02 Score=25.61 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=52.1
Q ss_pred EEEEEEeecCCccc--cceeeccccchhhhcC-----------CCCccccCCCCCCceeEEeeecee-------------
Q psy7947 61 MYVSLKFHCGDNKT--ESVAVAMTNTFIARKM-----------GFPEIILPGDVRNDLYVTLVNAEF------------- 114 (173)
Q Consensus 61 l~VsLkll~Gdl~q--enP~L~~~~v~itrKl-----------GFpevI~Pgd~RNDlYvTL~~GeF------------- 114 (173)
-++.|++|.|..+. --||.|-+-..+|-|. |=+-+=+|=++-|||-++++-+-+
T Consensus 55 kp~~LQvFigt~d~r~~~PH~FYQ~hritGk~v~T~~~E~~i~gT~vlEv~l~P~~nMt~~iDC~GIlKLRN~DiElRkg 134 (175)
T cd07881 55 KPLTLQMFIGTADDRYLRPHAFYQVHRITGKTVATASQEIIISNTKVLEIPLLPENNMRASIDCAGILKLRNSDIELRKG 134 (175)
T ss_pred cceEEEEEEecCCCcccCCccceEEEEEEcCCCcccceeEecCCCeEEEeeccCCCCeEEEEeehhhhhhhccchhhhcc
Confidence 58999999999887 6899886666666666 333333477899999999987665
Q ss_pred --eccCCceEEEEEEEc----cCCcee
Q psy7947 115 --KSSDKTIQVTVQVCT----EAGVIL 135 (173)
Q Consensus 115 --ks~~kNiEVt~~V~~----~~G~~I 135 (173)
-..-||-.|.|..|- .+|..+
T Consensus 135 etd~~rk~Tr~RlvFRv~Ip~~~G~~~ 161 (175)
T cd07881 135 ETDIGRKNTRVRLVFRVHIPQPSGRVL 161 (175)
T ss_pred cCCccccccEEEEEEEEeccCCCCCEE
Confidence 123456666665553 566554
No 20
>PF13115 YtkA: YtkA-like
Probab=29.29 E-value=92 Score=21.47 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=21.5
Q ss_pred ceeEEeeeceeeccCCceEEEEEEEccCCceeccce
Q psy7947 104 DLYVTLVNAEFKSSDKTIQVTVQVCTEAGVILKVNA 139 (173)
Q Consensus 104 DlYvTL~~GeFks~~kNiEVt~~V~~~~G~~Ie~cI 139 (173)
++-|+|..-+--..+.| +++++ .+.+|+.++++-
T Consensus 6 ~~~v~l~~~~~~~~g~~-~i~v~-~~~~g~pv~~a~ 39 (86)
T PF13115_consen 6 GYTVELVSPEPPKVGEN-TITVT-VDQGGKPVTDAD 39 (86)
T ss_pred cEEEEEecCCCCcCCce-EEEEE-ECCCCCCCCCCE
Confidence 45566666532233445 67777 888888888764
No 21
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=26.72 E-value=91 Score=21.85 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=16.6
Q ss_pred EEEEEEEccCCceeccceEecCCCCC
Q psy7947 122 QVTVQVCTEAGVILKVNAEFKSSDKT 147 (173)
Q Consensus 122 EVt~~V~~~~G~~Ie~cI~~gSg~~~ 147 (173)
+|+|.|.|++|++| ..+..++-..+
T Consensus 26 ~v~v~I~d~~G~~V-~t~~~~~~~~G 50 (81)
T PF13860_consen 26 NVTVTIYDSNGQVV-RTISLGSQSAG 50 (81)
T ss_dssp EEEEEEEETTS-EE-EEEEEEECSSE
T ss_pred EEEEEEEcCCCCEE-EEEEcCCcCCc
Confidence 57899999999998 44455444333
No 22
>PRK08298 cytidine deaminase; Validated
Probab=25.08 E-value=33 Score=27.28 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=29.5
Q ss_pred EEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhc
Q psy7947 122 QVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAH 165 (173)
Q Consensus 122 EVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~ 165 (173)
.|-.-++.+||+++ .|.|-+..+.=-|+|+||..|-+|.
T Consensus 24 ~VgAAllt~dG~i~-----tG~NvEnas~~~t~CAEr~Ai~~av 62 (136)
T PRK08298 24 GGAAAMRVEDGTIL-----TSVAPEVINASTELCMETGAICEAH 62 (136)
T ss_pred ceeEEEEeCCCCEE-----EEEeecCCCCCcchhHHHHHHHHHH
Confidence 78888999999864 5556555444468999999988774
No 23
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=24.95 E-value=1.6e+02 Score=21.51 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=20.8
Q ss_pred cCCCCccccCCCCCCceeEEeeeceeeccCCceEEEEEEEccCCce
Q psy7947 89 KMGFPEIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQVCTEAGVI 134 (173)
Q Consensus 89 KlGFpevI~Pgd~RNDlYvTL~~GeFks~~kNiEVt~~V~~~~G~~ 134 (173)
++-|..-++|||. |+++..-.+... .+.+.+.++++|++|+.
T Consensus 73 ~~rf~~pv~~Gdt---l~~~~~v~~~~~-~~~v~~~~~~~nq~G~~ 114 (123)
T cd03455 73 AFRLGAPLYAGDT---LRFGGRVTAKRD-DEVVTVELWARNSEGDH 114 (123)
T ss_pred EEEeeccccCCCE---EEEEEEEEeecc-CcEEEEEEEEEcCCCCE
Confidence 4445555555542 443333222111 11666777777777764
No 24
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=23.42 E-value=1.1e+02 Score=24.22 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=23.7
Q ss_pred ceeEEeeeceeecc---CCceEEEEEEEccCCcee
Q psy7947 104 DLYVTLVNAEFKSS---DKTIQVTVQVCTEAGVIL 135 (173)
Q Consensus 104 DlYvTL~~GeFks~---~kNiEVt~~V~~~~G~~I 135 (173)
.+||.|.+||+-.. .=..++|+.++|.+|...
T Consensus 57 Sv~l~l~~g~~D~~l~wp~~~~~tfsLlDq~~~~~ 91 (148)
T cd03780 57 SLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKN 91 (148)
T ss_pred EEEEEEecCccccccCcceEEEEEEEEECCCCCCC
Confidence 47888998987222 226789999999988754
No 25
>PRK05578 cytidine deaminase; Validated
Probab=22.79 E-value=36 Score=26.75 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=29.1
Q ss_pred ceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhc
Q psy7947 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAH 165 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~ 165 (173)
|..|-..+++++|.+ |.|.|-+..+-=-++|+||..|..|+
T Consensus 23 ~f~Vgaa~~~~~G~i-----~~G~nvEna~~~~~~CAE~~Ai~~av 63 (131)
T PRK05578 23 KFPVGAALLTDDGRI-----YTGCNIENASYGLTNCAERTAIFKAI 63 (131)
T ss_pred CCceEEEEEeCCCCE-----EEEEEeeCccccCCcCHHHHHHHHHH
Confidence 567889999999975 55555554433356888988887664
No 26
>PRK12411 cytidine deaminase; Provisional
Probab=22.60 E-value=36 Score=26.79 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=29.0
Q ss_pred ceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhc
Q psy7947 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAH 165 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~ 165 (173)
+-.|-..++.++|+++ .|.|-+..+-=-|+|+||..|..|+
T Consensus 23 ~~~VgAa~~t~~G~i~-----~G~nvEn~s~~~s~CAE~~Ai~~av 63 (132)
T PRK12411 23 KFQVGAALLTQDGKVY-----RGCNVENASYGLCNCAERTALFKAV 63 (132)
T ss_pred CCceEEEEEeCCCCEE-----EEEEeecCCCCcCcCHHHHHHHHHH
Confidence 5678889999999754 5555544433346799999887764
No 27
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=22.59 E-value=1.3e+02 Score=25.64 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=17.7
Q ss_pred eEEEEEEEccCCceeccceEecCCCCCc
Q psy7947 121 IQVTVQVCTEAGVILKVNAEFKSSDKTI 148 (173)
Q Consensus 121 iEVt~~V~~~~G~~Ie~cI~~gSg~~~v 148 (173)
=.|++.|+|++|++| ..|.+|+-+++.
T Consensus 122 ~~v~i~I~d~~G~~V-~t~~lg~~~aG~ 148 (221)
T PRK12634 122 GFVNFEITDANGAFV-KQISVPASAAGE 148 (221)
T ss_pred CeEEEEEEcCCCCEE-EEEecCCcCCCc
Confidence 356788888888876 345555555444
No 28
>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.
Probab=22.35 E-value=3.8e+02 Score=24.32 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=59.5
Q ss_pred ccccEEEEEEeecCCccc---cc--eeeccccchhhhcCCCCccccCCCCCCceeEEeeecee---------e---ccCC
Q psy7947 57 KSAGMYVSLKFHCGDNKT---ES--VAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF---------K---SSDK 119 (173)
Q Consensus 57 ~~~gl~VsLkll~Gdl~q---en--P~L~~~~v~itrKlGFpevI~Pgd~RNDlYvTL~~GeF---------k---s~~k 119 (173)
.-..+.|-+-+|+||... ++ +.-|++.+... |=|=. .++.| |+||+|..|.= . ...+
T Consensus 43 ~lss~kieIvvLdGdF~~~~~~~wT~eeF~~~iv~~-r~gk~-pLL~G----~~~v~L~~G~a~l~di~FtdnSs~~rsr 116 (299)
T PF07887_consen 43 PLSSAKIEIVVLDGDFNDEDCEDWTEEEFNSHIVKE-REGKR-PLLTG----DLQVTLKNGVATLGDISFTDNSSWIRSR 116 (299)
T ss_pred CCCCcEEEEEEEccccCCCccCCCCHHHHhhcEeec-CCCCC-CCCCc----cEEEEecCCEEEccccEEecCcccccCC
Confidence 445688889999999987 22 23354443322 22321 33455 79999999964 1 1244
Q ss_pred ceEEEEEEEccC--CceeccceEecCCCCCceeEEEEeeeccchhhhcc
Q psy7947 120 TIQVTVQVCTEA--GVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHD 166 (173)
Q Consensus 120 NiEVt~~V~~~~--G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~ 166 (173)
-.-+-+.|+..+ |.+|.. ++|.=-.|...||+..|-|+
T Consensus 117 KFRLgarv~~~~~~~~rI~E---------avse~FvVkd~Rge~~kKh~ 156 (299)
T PF07887_consen 117 KFRLGARVVSGSCDGVRIRE---------AVSEPFVVKDHRGELYKKHY 156 (299)
T ss_pred cEEEEEEEccCCCCCceeEE---------eeecCEEEEecccccccCCC
Confidence 566666666653 556644 44555678899999887764
No 29
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=22.14 E-value=21 Score=27.80 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=21.3
Q ss_pred cceeeccccchhhh---cCCCCc----cccCCCCCC
Q psy7947 75 ESVAVAMTNTFIAR---KMGFPE----IILPGDVRN 103 (173)
Q Consensus 75 enP~L~~~~v~itr---KlGFpe----vI~Pgd~RN 103 (173)
+||.|+.|.+.+.. -+||++ .++|.+.|.
T Consensus 85 ~~P~LikRPIv~~~~~~~iG~~~e~~~~~l~~~~r~ 120 (132)
T PRK13344 85 ENPRILKSPILIDDKRLQVGYKEDDIRAFLPRSIRN 120 (132)
T ss_pred hCccceeCcEEEeCCEEEeCCCHHHHHHHccHHHHH
Confidence 99999988876654 489986 556665553
No 30
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=21.64 E-value=1.3e+02 Score=25.66 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=18.0
Q ss_pred EEEEEEEccCCceeccceEecCCCCCc
Q psy7947 122 QVTVQVCTEAGVILKVNAEFKSSDKTI 148 (173)
Q Consensus 122 EVt~~V~~~~G~~Ie~cI~~gSg~~~v 148 (173)
.|+++|+|++|++| ..|..|+-.++.
T Consensus 127 ~vti~I~D~~G~~V-rt~~lg~~~aG~ 152 (225)
T PRK06655 127 NVTVTITDSAGQVV-RTIDLGAQSAGV 152 (225)
T ss_pred EEEEEEEcCCCCEE-EEEecCCcCCCc
Confidence 58899999999988 445454433443
No 31
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=21.17 E-value=84 Score=22.98 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=15.7
Q ss_pred CCceEEEEEEEccCCceeccc
Q psy7947 118 DKTIQVTVQVCTEAGVILKVN 138 (173)
Q Consensus 118 ~kNiEVt~~V~~~~G~~Ie~c 138 (173)
.-...+++.|.|++|++|++.
T Consensus 22 ~~~~tltatV~D~~gnpv~g~ 42 (100)
T PF02369_consen 22 SDTNTLTATVTDANGNPVPGQ 42 (100)
T ss_dssp SS-EEEEEEEEETTSEB-TS-
T ss_pred cCcEEEEEEEEcCCCCCCCCC
Confidence 446789999999999999976
No 32
>PHA02085 hypothetical protein
Probab=21.10 E-value=1.8e+02 Score=22.01 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=44.8
Q ss_pred ccchhhhcCCCCccccCCCCCCceeEEeeeceeeccCCceEEEEEEEccCCceeccceEecCCCCCceeEEE
Q psy7947 82 TNTFIARKMGFPEIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQ 153 (173)
Q Consensus 82 ~~v~itrKlGFpevI~Pgd~RNDlYvTL~~GeFks~~kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t 153 (173)
-|-.|+..||-.-- |-..|-|.| .=+-++.|+|++|+.+......-.|+..-++|.-
T Consensus 20 ~N~~IAe~mGmdwW--ecE~~ad~y-------------d~~~~i~ilD~~~n~v~g~~~~d~~~~~d~awvf 76 (87)
T PHA02085 20 CNQWIADKMGTDWW--ECEYDADVY-------------DDEASILILDEDVPLTGKYHAADDEDDDDTAWVL 76 (87)
T ss_pred hhHHHHHHhcCCcc--cccCccccc-------------cCCceEEEEcCCCCceeeEEEecCCCCCceeEEE
Confidence 46678888998766 778888888 2345688999999988887777788888888863
No 33
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=21.05 E-value=49 Score=25.46 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=29.5
Q ss_pred ceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhc
Q psy7947 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAH 165 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~ 165 (173)
+..|-..+++.+|+ |+.|.|-+..+-=-|.++|+..|.+|+
T Consensus 20 ~~~vgAa~~~~~G~-----i~~G~n~e~~~~~~s~~AE~~Ai~~a~ 60 (127)
T TIGR01354 20 NFKVGAALLTKDGR-----IFTGVNVENASYPLTICAERSAIGKAI 60 (127)
T ss_pred CCeEEEEEEeCCCC-----EEEEEeecccCCCCCcCHHHHHHHHHH
Confidence 56677888888887 455766665554457788888887775
No 34
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=20.12 E-value=1.2e+02 Score=22.16 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=28.6
Q ss_pred CCCcee--EEeeeceeeccCCceEEEEEEEccCCceeccceEecCCCCCce
Q psy7947 101 VRNDLY--VTLVNAEFKSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQ 149 (173)
Q Consensus 101 ~RNDlY--vTL~~GeFks~~kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt 149 (173)
.+...| |++.+|++ .....+++|..++..++..+|++++.
T Consensus 21 TK~GtWg~l~Vl~G~L---------~f~~~~~~~~~~~~~~~~~~~~~~~i 62 (82)
T PF09313_consen 21 TKAGTWGKLRVLEGEL---------KFYGLDEEGEEPEEEVFIPAGQPPVI 62 (82)
T ss_dssp CSTTEEEEEEEEESEE---------EEEEESSTT-SESEEEEEETTEEEEE
T ss_pred CCCCeEEEEEEEeeEE---------EEEEECCCCCceeEEEEeCCCCCcee
Confidence 345566 77788874 47788888888888888888877764
Done!