Query psy7947
Match_columns 173
No_of_seqs 119 out of 150
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 22:53:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l4c_A Dedicator of cytokinesi 99.9 1.7E-24 5.8E-29 181.8 5.5 69 89-157 13-85 (220)
2 3dmo_A Cytidine deaminase; str 46.3 4.2 0.00014 31.4 -0.0 42 120-166 31-72 (138)
3 3r2n_A Cytidine deaminase; str 44.8 3.5 0.00012 31.7 -0.7 43 120-167 30-72 (138)
4 3mpz_A Cytidine deaminase; ssg 42.3 4 0.00014 32.0 -0.7 43 119-166 44-86 (150)
5 4a4y_A Protein MXIG; protein b 38.7 13 0.00045 28.6 1.7 30 84-113 60-95 (146)
6 3b8f_A Putative blasticidin S 33.2 14 0.00047 28.1 1.0 40 122-166 24-63 (142)
7 2d30_A Cytidine deaminase; pur 32.6 9 0.00031 29.4 -0.1 42 120-166 32-73 (141)
8 1r5t_A Cytidine deaminase; zin 31.4 10 0.00034 28.9 -0.0 42 120-166 31-72 (142)
9 3e8v_A Possible transglutamina 30.0 31 0.0011 24.6 2.4 17 122-138 2-18 (82)
10 3l78_A Regulatory protein SPX; 29.7 16 0.00055 26.3 0.9 28 75-102 85-119 (120)
11 3oj6_A Blasticidin-S deaminase 27.4 19 0.00065 28.3 0.9 40 120-166 50-89 (158)
12 2fr5_A Cytidine deaminase; tet 26.4 13 0.00045 28.6 -0.1 43 119-166 34-76 (146)
13 1iq6_A (R)-hydratase, (R)-spec 24.3 1.3E+02 0.0045 20.5 4.9 14 86-99 42-55 (134)
14 2j0p_A HEMS, hemin transport p 23.3 38 0.0013 29.7 2.2 42 115-156 294-336 (345)
15 2r39_A FIXG-related protein; s 22.2 1.2E+02 0.0042 21.4 4.5 45 101-145 18-73 (118)
16 2z3g_A Blasticidin-S deaminase 21.6 17 0.00057 27.2 -0.4 41 119-166 25-65 (130)
17 3i38_A Putative chaperone DNAJ 20.7 79 0.0027 22.6 3.1 47 60-110 28-75 (109)
18 1kxf_A Sindbis virus capsid pr 20.2 1.6E+02 0.0055 25.1 5.3 89 59-156 128-246 (264)
No 1
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=99.90 E-value=1.7e-24 Score=181.78 Aligned_cols=69 Identities=36% Similarity=0.439 Sum_probs=54.3
Q ss_pred cCCCCccccCCCCCCceeEEeeecee----eccCCceEEEEEEEccCCceeccceEecCCCCCceeEEEEeee
Q psy7947 89 KMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTE 157 (173)
Q Consensus 89 KlGFpevI~Pgd~RNDlYvTL~~GeF----ks~~kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~e 157 (173)
-|-|||||||||+||||||||++|+| ++++|||||+|+||+++|+++++||+.|||+++++.|+|+++.
T Consensus 13 ~~~fpevI~Pgd~RNdLYVtl~~g~F~~~~k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~Y 85 (220)
T 3l4c_A 13 GLVPRGSHMPGDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYY 85 (220)
T ss_dssp -------------CEEEEEEEEEEECCCSSSSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCT
T ss_pred CccccccccCCCCcccEEEEeeEeEECCCCCCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEE
Confidence 46799999999999999999999999 6789999999999999999999999999999999999999976
No 2
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=46.25 E-value=4.2 Score=31.43 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=34.3
Q ss_pred ceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhcc
Q psy7947 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHD 166 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~ 166 (173)
|..|-.-++.+||+ ||.|.|-+..+-=-++|+||.-|.+|.-
T Consensus 31 ~F~VGAAll~~dG~-----iytG~NVEnasy~~t~CAEr~Ai~~Avs 72 (138)
T 3dmo_A 31 NFKVGAALVTNDGK-----VFHGCNVENASYGLCNCAERTALFSALA 72 (138)
T ss_dssp CCCEEEEEEETTSC-----EEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCCC-----EEEEEeecccccccccCHHHHHHHHHHH
Confidence 66788899999997 5788888876655689999999988864
No 3
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=44.76 E-value=3.5 Score=31.74 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=35.2
Q ss_pred ceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhccc
Q psy7947 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHDQ 167 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~~ 167 (173)
+..|-.-++.+||+ |+.|.|-+..+---|+|+||..|.+|.-+
T Consensus 30 ~f~VGAAll~~dG~-----i~~G~NvEnasy~~t~CAEr~Ai~~Av~~ 72 (138)
T 3r2n_A 30 NFPVGVAGFVNDGR-----LITGVNVENASYGLALCAECSMISALYAT 72 (138)
T ss_dssp CCCCEEEEEETTSC-----EEEEECBCCSSGGGCBCHHHHHHHHHHHT
T ss_pred CCcEEEEEEeCCCc-----EEEEEcccccCCCCCcCHHHHHHHHHHHc
Confidence 66788889999997 46888888777677999999999988643
No 4
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=42.31 E-value=4 Score=32.01 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=34.3
Q ss_pred CceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhcc
Q psy7947 119 KTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHD 166 (173)
Q Consensus 119 kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~ 166 (173)
.|..|-.-++.+||+ ||.|.|-+..+-=-|+|+||..|.+|.-
T Consensus 44 S~F~VGAAll~~dG~-----i~tG~NvEnasy~~t~CAEr~Ai~~Avs 86 (150)
T 3mpz_A 44 SGFPVGAAALVDDGR-----TVTGCNVENVSYGLGLCAECAVVCALHS 86 (150)
T ss_dssp TCCCCEEEEEETTSC-----EEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCC-----EEEEEecccccCCccccHHHHHHHHHHH
Confidence 366788899999997 5677787776655689999999998864
No 5
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=38.66 E-value=13 Score=28.55 Aligned_cols=30 Identities=37% Similarity=0.749 Sum_probs=20.9
Q ss_pred chhhhcCC---CCccccC-CCCCCc--eeEEeeece
Q psy7947 84 TFIARKMG---FPEIILP-GDVRND--LYVTLVNAE 113 (173)
Q Consensus 84 v~itrKlG---FpevI~P-gd~RND--lYvTL~~Ge 113 (173)
+.-|...| ||+.|.| +|..+| ||+|+..-.
T Consensus 60 tietlefgndnfpeniipvtdsksdgiiyltiskdn 95 (146)
T 4a4y_A 60 TIETLEFGNDNFPENIIPVTDSKSDGIIYLTISKDN 95 (146)
T ss_dssp GGGGCCC----CCSEEEEETTCSSCEEEEEEECTTC
T ss_pred eEeEEeccCCCCccceeecccCCCCcEEEEEEecCc
Confidence 34444444 8999988 577777 899987654
No 6
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=33.22 E-value=14 Score=28.09 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=33.3
Q ss_pred EEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhcc
Q psy7947 122 QVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHD 166 (173)
Q Consensus 122 EVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~ 166 (173)
.|-.-++.+||+ |+.|.|-+..+---+.|+||.-|.+|.-
T Consensus 24 ~VGAAl~~~dG~-----i~~G~NvEnas~~~~lcAEr~Ai~~a~~ 63 (142)
T 3b8f_A 24 GGAAAIRVEDGT-----IYTSVAPDVINASTELCMETGAILEAHK 63 (142)
T ss_dssp EEEEEEEETTSC-----EEEECCCCCSSGGGCCCTTHHHHHHHHH
T ss_pred CEEEEEEeCCCc-----EEEEECcccccCCcccCHHHHHHHHHHH
Confidence 777888899996 5678898888777899999999988753
No 7
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=32.59 E-value=9 Score=29.40 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=33.7
Q ss_pred ceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhcc
Q psy7947 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHD 166 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~ 166 (173)
|..|-.-++++||. |+.|.|-+..+---|+|+||..|.+|.-
T Consensus 32 ~f~VGAAll~~dG~-----i~~G~NvEnasy~~t~CAEr~Ai~~Avs 73 (141)
T 2d30_A 32 KFQVGAALLTQDGK-----VYRGCNVENASYGLCNCAERTALFKAVS 73 (141)
T ss_dssp CCCEEEEEEETTCC-----EEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCC-----EEEeeccccCCCCcccCHHHHHHHHHHH
Confidence 66788889999995 4678887776666799999999988753
No 8
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=31.36 E-value=10 Score=28.92 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=33.8
Q ss_pred ceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhcc
Q psy7947 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHD 166 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~ 166 (173)
+-.|-.-++++||+ |+.|.|-+..+---|.|+||..|.+|.-
T Consensus 31 ~f~VGAAl~~~dG~-----i~~G~NvEnasy~~t~cAEr~Ai~~a~~ 72 (142)
T 1r5t_A 31 HFRVGCSILTNNDV-----IFTGANVENASYSNCICAERSAMIQVLM 72 (142)
T ss_dssp CCCEEEEEECTTSC-----EEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCCC-----EEEEEeecccCCCCCcCHHHHHHHHHHH
Confidence 66788889999995 5678888877766799999999988763
No 9
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=30.03 E-value=31 Score=24.58 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=14.0
Q ss_pred EEEEEEEccCCceeccc
Q psy7947 122 QVTVQVCTEAGVILKVN 138 (173)
Q Consensus 122 EVt~~V~~~~G~~Ie~c 138 (173)
.+++.|+|++|++++++
T Consensus 2 ~~~v~V~d~~GkPV~gA 18 (82)
T 3e8v_A 2 KGSVLVTDAEGQPVADA 18 (82)
T ss_dssp EEEEEEECTTSCBCTTC
T ss_pred cEEEEEEcCCCCCCCCC
Confidence 46788999999999873
No 10
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=29.67 E-value=16 Score=26.33 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=20.1
Q ss_pred cceeeccccchhhh---cCCCCc----cccCCCCC
Q psy7947 75 ESVAVAMTNTFIAR---KMGFPE----IILPGDVR 102 (173)
Q Consensus 75 enP~L~~~~v~itr---KlGFpe----vI~Pgd~R 102 (173)
+||.|+.|.+.++. -+||++ .++|.+.|
T Consensus 85 ~~p~LikRPiv~~~~~~~vG~~~e~~~~~l~~~~r 119 (120)
T 3l78_A 85 KNPSLLRRPIIMDNKRMQIGFNEDEIRAFLPRDYR 119 (120)
T ss_dssp HCGGGBCSCEEECSSCEEESCCTTGGGGGSCCC--
T ss_pred hCccceeccEEEECCEEEecCCHHHHHHHhhhhhc
Confidence 99999988877765 489986 45676666
No 11
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=27.36 E-value=19 Score=28.32 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=30.0
Q ss_pred ceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhcc
Q psy7947 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHD 166 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~ 166 (173)
+..|-.-++.+||+ ||.|.|-+.-+ -++|+||..|.+|.-
T Consensus 50 ~f~VGAAll~~dG~-----i~tG~NVEn~~--~~lCAEr~Ai~~Avs 89 (158)
T 3oj6_A 50 FYSVASAAISDDGR-----VFSGVNVYHFN--GGPCAELVVLGVAAA 89 (158)
T ss_dssp SSCEEEEEEETTSC-----EEEEECCCCTT--TCCCHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCC-----EEEEEccccCC--ccccHHHHHHHHHHH
Confidence 36788999999998 45666665433 368999999888753
No 12
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=26.37 E-value=13 Score=28.58 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=33.9
Q ss_pred CceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhcc
Q psy7947 119 KTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHD 166 (173)
Q Consensus 119 kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~ 166 (173)
.+..|-.-++++||++ +.|.|-+..+---|.|+||..|.+|.-
T Consensus 34 s~f~VGAal~~~dG~i-----~~G~NvEnas~~~t~cAE~~Ai~~A~~ 76 (146)
T 2fr5_A 34 SRFPVGAALLTGDGRI-----FSGCNIENACYPLGVCAERTAIQKAIS 76 (146)
T ss_dssp TCCCEEEEEEETTSCE-----EEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCcE-----EEEEeccccCCCCCcCHHHHHHHHHHh
Confidence 3667888899899854 468887777666799999999998863
No 13
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=24.34 E-value=1.3e+02 Score=20.46 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=6.8
Q ss_pred hhhcCCCCccccCC
Q psy7947 86 IARKMGFPEIILPG 99 (173)
Q Consensus 86 itrKlGFpevI~Pg 99 (173)
.++..||++.|+||
T Consensus 42 ~A~~~g~~~~i~hG 55 (134)
T 1iq6_A 42 FAATTAFERPIVHG 55 (134)
T ss_dssp HHTTSTTCSCBCCH
T ss_pred HHHhCCCCCceECH
Confidence 33445555555444
No 14
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM, iron, trans ION transport, proteobacteria, iron transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica} SCOP: e.62.1.1 PDB: 2j0r_A*
Probab=23.34 E-value=38 Score=29.66 Aligned_cols=42 Identities=5% Similarity=-0.008 Sum_probs=31.2
Q ss_pred eccCCceEEEEEEEccCCceeccceEe-cCCCCCceeEEEEee
Q psy7947 115 KSSDKTIQVTVQVCTEAGVILKVNAEF-KSSDKTIQVTVQVCT 156 (173)
Q Consensus 115 ks~~kNiEVt~~V~~~~G~~Ie~cI~~-gSg~~~vt~w~t~~~ 156 (173)
|.+..-.-..+|+.|++|+.|=...-. ..|.+..+.||..+.
T Consensus 294 KPt~dG~vtSlE~fd~~G~~i~q~fg~R~~g~~e~~~Wr~l~~ 336 (345)
T 2j0p_A 294 KPTKDGFVTSLELFAADGTQIAQLYGQRTEGQPEQTQWRDQIA 336 (345)
T ss_dssp ECCTTCCEEEEEEECTTSCEEEEEEECCCTTSCCCHHHHHHHT
T ss_pred cCCCCCeEEEEEeecCCCCEEEEEEccCCCCCCccHHHHHHHH
Confidence 666666778899999999976443322 478888999997654
No 15
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=22.23 E-value=1.2e+02 Score=21.44 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=24.3
Q ss_pred CCCceeEEeeecee---------eccCCceEEEEEEEccCCceec--cceEecCCC
Q psy7947 101 VRNDLYVTLVNAEF---------KSSDKTIQVTVQVCTEAGVILK--VNAEFKSSD 145 (173)
Q Consensus 101 ~RNDlYvTL~~GeF---------ks~~kNiEVt~~V~~~~G~~Ie--~cI~~gSg~ 145 (173)
.||-||..+..|.+ -.+..-.++++.|-.-+|-.+. .-|.+++|+
T Consensus 18 dR~~Ly~~~~dG~I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~ 73 (118)
T 2r39_A 18 DRNQLFRVNSAGEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGE 73 (118)
T ss_dssp CSSCCCCC--CCSEEEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTC
T ss_pred cCCceEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCC
Confidence 57788888877766 2334456666777665553221 234554444
No 16
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=21.62 E-value=17 Score=27.21 Aligned_cols=41 Identities=20% Similarity=0.087 Sum_probs=30.1
Q ss_pred CceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhcc
Q psy7947 119 KTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHD 166 (173)
Q Consensus 119 kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~ 166 (173)
.|..|-.-++++||++ +.|.|-+. ---|.|+||..|.+|.-
T Consensus 25 s~f~VGAal~~~dG~i-----~~G~NvE~--~~~t~cAE~~Ai~~A~~ 65 (130)
T 2z3g_A 25 EDYSVASAALSSDGRI-----FTGVNVYH--FTGGPCAELVVLGTAAA 65 (130)
T ss_dssp SSSCEEEEEEETTSCE-----EEEECCCC--TTTCCCHHHHHHHHHHH
T ss_pred CCCCEEEEEEecCCeE-----EEEecccc--CCcccCHHHHHHHHHHH
Confidence 4567888889899964 45767662 22389999999988764
No 17
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=20.67 E-value=79 Score=22.62 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=25.1
Q ss_pred cEEEEEEeecCCccccceeecccc-chhhhcCCCCccccCCCCCCceeEEee
Q psy7947 60 GMYVSLKFHCGDNKTESVAVAMTN-TFIARKMGFPEIILPGDVRNDLYVTLV 110 (173)
Q Consensus 60 gl~VsLkll~Gdl~qenP~L~~~~-v~itrKlGFpevI~Pgd~RNDlYvTL~ 110 (173)
|-.+.+..|.|.+.-.-|.-...+ .-..+-.|+|. ++ .|-||||++.
T Consensus 28 G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~---~~-~~GDL~v~~~ 75 (109)
T 3i38_A 28 GAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVS---KT-HTGDLFAVIK 75 (109)
T ss_dssp CEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBC---SS-CBCCEEEEEE
T ss_pred CCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCC---CC-CCcCEEEEEE
Confidence 344555555554322222222122 22234588885 55 7999999874
No 18
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A
Probab=20.18 E-value=1.6e+02 Score=25.14 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=49.8
Q ss_pred ccEEEEEEee-cCCccc--cceeeccccchhhhcCCCCccccCCCCCCcee-----------------EEeeecee----
Q psy7947 59 AGMYVSLKFH-CGDNKT--ESVAVAMTNTFIARKMGFPEIILPGDVRNDLY-----------------VTLVNAEF---- 114 (173)
Q Consensus 59 ~gl~VsLkll-~Gdl~q--enP~L~~~~v~itrKlGFpevI~Pgd~RNDlY-----------------vTL~~GeF---- 114 (173)
+-+.|.=+++ .-..+- +||.|..-....+.+...--+=+|-..|+|-+ |..+.|.|
T Consensus 128 yAc~vggKVmKPlHVkG~IDn~~La~lk~kkss~yDlE~a~~P~~Mrsda~~yT~ekpeg~YnWhhGaVqy~~grftvp~ 207 (264)
T 1kxf_A 128 HALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPR 207 (264)
T ss_dssp EEEEETTEEEEETTCCSEESCTTGGGSCCEEEGGGTEEEEECCTTGGGSCBCBCCCCCSEEEEETTEEEEEETTEEEEET
T ss_pred EEEEEcCeeccccccccccCCHHHhhhhhccccccchhhcccchhhhhhhhhhhhcCCCcccccccceEEeeCCeEEecc
Confidence 3444544555 333443 89999644455555544433333999999964 34445555
Q ss_pred -----eccCCceEEEEEEEccCCceeccceEec-CCCCCceeEEEEee
Q psy7947 115 -----KSSDKTIQVTVQVCTEAGVILKVNAEFK-SSDKTIQVTVQVCT 156 (173)
Q Consensus 115 -----ks~~kNiEVt~~V~~~~G~~Ie~cI~~g-Sg~~~vt~w~t~~~ 156 (173)
.-+++- +.|..|.++ +|.+| +||...|| -||++
T Consensus 208 G~G~~GDSGRp------I~DN~GrVV--aIVLGGaneG~RTa-LSVVt 246 (264)
T 1kxf_A 208 GVGGRGDSGRP------IMDNSGRVV--AIVLGGADEGTRTA-LSVVT 246 (264)
T ss_dssp TSCCTTCTTCE------EECTTSCEE--EEEEEEEEETTEEE-EEEEE
T ss_pred cCCCCCCCCCc------cccCCCcEE--EEEecCCCcCCcee-EEEEE
Confidence 123443 357778775 78886 55555554 44444
Done!