Query psy7947
Match_columns 173
No_of_seqs 119 out of 150
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 22:53:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7947.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7947hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fr5a1 c.97.1.1 (A:11-146) mo 69.8 0.42 3.1E-05 34.7 -0.1 42 120-166 25-66 (136)
2 d2bcgg3 d.16.1.6 (G:302-399) G 59.2 4.1 0.0003 28.5 3.5 44 80-123 14-60 (98)
3 d2z3ga1 c.97.1.1 (A:2-124) Bla 57.1 1.3 9.4E-05 31.7 0.5 42 119-167 24-65 (123)
4 d1d5ta2 d.16.1.6 (A:292-388) G 56.7 4.8 0.00035 28.1 3.5 45 79-123 12-59 (97)
5 d1uwza_ c.97.1.1 (A:) mono-dom 48.5 1.7 0.00012 31.0 -0.1 42 120-166 23-64 (130)
6 d1r5ta_ c.97.1.1 (A:) mono-dom 40.4 2.8 0.0002 30.3 0.0 41 120-165 30-70 (141)
7 d2d30a1 c.97.1.1 (A:1-124) mon 31.5 4.6 0.00033 28.4 -0.1 41 120-165 23-63 (124)
8 d3pccm_ b.3.6.1 (M:) Protocate 30.5 14 0.001 28.8 2.8 47 92-140 51-97 (236)
9 d1zswa1 d.32.1.10 (A:1-144) Hy 25.0 20 0.0014 23.3 2.4 28 124-151 116-143 (144)
10 d1nb9a_ b.43.5.1 (A:) Riboflav 24.8 23 0.0017 25.5 2.9 29 82-110 13-50 (147)
11 d1iq6a_ d.38.1.4 (A:) (R)-spec 23.2 59 0.0043 21.2 4.7 17 83-99 37-53 (132)
12 d1nqja_ b.23.2.1 (A:) Class 1 22.1 40 0.0029 21.3 3.5 38 101-138 20-62 (101)
13 d1cwva1 b.1.14.1 (A:503-596) I 21.1 29 0.0021 22.7 2.6 21 120-140 19-39 (94)
14 d2vzsa2 b.1.4.1 (A:778-899) Ex 20.2 28 0.002 24.4 2.4 64 57-130 22-98 (122)
No 1
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=69.77 E-value=0.42 Score=34.70 Aligned_cols=42 Identities=21% Similarity=0.159 Sum_probs=36.0
Q ss_pred ceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhcc
Q psy7947 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHD 166 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~ 166 (173)
|..|-..++.+||+ ||.|.|-+..+-.-++|+||..|..|+-
T Consensus 25 ~f~VGAa~~~~dG~-----i~~G~NvEnasy~~~iCAEr~Ai~~a~~ 66 (136)
T d2fr5a1 25 RFPVGAALLTGDGR-----IFSGCNIENACYPLGVCAERTAIQKAIS 66 (136)
T ss_dssp CCCEEEEEEETTSC-----EEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCC-----EEEEEeecccccccccchhheeeeeeec
Confidence 67788999999997 5788888888878899999999998863
No 2
>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=59.24 E-value=4.1 Score=28.55 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=28.8
Q ss_pred ccccchhhhcCCCCccccCC---CCCCceeEEeeeceeeccCCceEE
Q psy7947 80 AMTNTFIARKMGFPEIILPG---DVRNDLYVTLVNAEFKSSDKTIQV 123 (173)
Q Consensus 80 ~~~~v~itrKlGFpevI~Pg---d~RNDlYvTL~~GeFks~~kNiEV 123 (173)
+++.++-|....=-.+|+|. ..+|||||...+-.=...+|.--+
T Consensus 14 l~hPipnt~~a~S~QIIiPq~Qv~Rk~DIYv~~~S~~h~V~~kg~yi 60 (98)
T d2bcgg3 14 LNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYL 60 (98)
T ss_dssp ESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGGTSSCTTCEE
T ss_pred ecCCcCCCCCCceEEEEEehHHhCCCcCEEEEEeccccccCCCCcEE
Confidence 44555555555555688886 679999999887765444444443
No 3
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]}
Probab=57.14 E-value=1.3 Score=31.67 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=32.7
Q ss_pred CceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhccc
Q psy7947 119 KTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHDQ 167 (173)
Q Consensus 119 kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~~ 167 (173)
.|..|-..++..||++ |.|.|-+..+- ++|+||..|.+|+-+
T Consensus 24 s~f~VGAa~l~~~G~i-----~~G~NvEN~s~--glCAEr~Ai~~a~~~ 65 (123)
T d2z3ga1 24 EDYSVASAALSSDGRI-----FTGVNVYHFTG--GPCAELVVLGTAAAA 65 (123)
T ss_dssp SSSCEEEEEEETTSCE-----EEEECCCCTTT--CCCHHHHHHHHHHHT
T ss_pred CCCCEEEEEEeCCCCE-----EEEEcccCCCC--ccchhhhHhhhhhhc
Confidence 4788999999999985 55666666544 789999999988643
No 4
>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}
Probab=56.70 E-value=4.8 Score=28.11 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=29.2
Q ss_pred eccccchhhhcCCCCccccCC---CCCCceeEEeeeceeeccCCceEE
Q psy7947 79 VAMTNTFIARKMGFPEIILPG---DVRNDLYVTLVNAEFKSSDKTIQV 123 (173)
Q Consensus 79 L~~~~v~itrKlGFpevI~Pg---d~RNDlYvTL~~GeFks~~kNiEV 123 (173)
++++.++-|....=-.+|+|. ..+|||||.+.+-.=....|.--+
T Consensus 12 Il~hPIpnt~~a~S~QIIiPq~Qv~Rk~DIYv~~~S~~h~V~~kg~yi 59 (97)
T d1d5ta2 12 ILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYI 59 (97)
T ss_dssp EESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGGTSSCTTCEE
T ss_pred EecCCcCCCCCCccEEEEeehHHhccCCCEEEEEeccccccCCCCeEE
Confidence 344555666655555688886 679999999888654444444433
No 5
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=48.50 E-value=1.7 Score=31.03 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=35.7
Q ss_pred ceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhcc
Q psy7947 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHD 166 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~~ 166 (173)
|..|-..++.++|+ ||.|.|-+..+-.-+.|+||..|..|+-
T Consensus 23 ~f~VGAa~~~~~G~-----i~~G~NvEnas~~~~~CAEr~Ai~~a~~ 64 (130)
T d1uwza_ 23 KFQVGAALLTKDGK-----VYRGCNIENAAYSMCNCAEATALFKAVS 64 (130)
T ss_dssp CCCEEEEEEETTSC-----EEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCC-----EEEEeeeccccccccccceehhhHHHHH
Confidence 66788999999997 5788898888888899999999988764
No 6
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.36 E-value=2.8 Score=30.27 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=32.1
Q ss_pred ceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhc
Q psy7947 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAH 165 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~ 165 (173)
|..|-..++.++|+ ||.|.|-+..+-=-|+|+||..|..|.
T Consensus 30 ~f~VGAAl~t~~G~-----I~~G~NvEnas~~~~lCAEr~Ai~~a~ 70 (141)
T d1r5ta_ 30 HFRVGCSILTNNDV-----IFTGANVENASYSNCICAERSAMIQVL 70 (141)
T ss_dssp CCCEEEEEECTTSC-----EEEEECBCCSSGGGCBCHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCC-----EEEEEeecccccccccCHHHHHHHHHH
Confidence 66788999999997 567777666555558999999988774
No 7
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]}
Probab=31.47 E-value=4.6 Score=28.39 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=32.8
Q ss_pred ceEEEEEEEccCCceeccceEecCCCCCceeEEEEeeeccchhhhc
Q psy7947 120 TIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAH 165 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~erg~~~~~~ 165 (173)
|..|-..++.+||+ ||.|.|-+..+-=-++|+||..|..|.
T Consensus 23 ~f~VGAal~~~~G~-----i~~G~NvEn~s~~~~~CAEr~Ai~~a~ 63 (124)
T d2d30a1 23 KFQVGAALLTQDGK-----VYRGCNVENASYGLCNCAERTALFKAV 63 (124)
T ss_dssp CCCEEEEEEETTCC-----EEEEECBCCSSGGGCBCHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCC-----EEEEEeeccccCCcccCHHHHHHHHHH
Confidence 56788999999997 467778777665567899999998774
No 8
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]}
Probab=30.48 E-value=14 Score=28.78 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=33.5
Q ss_pred CCccccCCCCCCceeEEeeeceeeccCCceEEEEEEEccCCceeccceE
Q psy7947 92 FPEIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQVCTEAGVILKVNAE 140 (173)
Q Consensus 92 FpevI~Pgd~RNDlYvTL~~GeFks~~kNiEVt~~V~~~~G~~Ie~cI~ 140 (173)
|+.. +|++.-|||=.....+. ...+.-|.|+-.|+|++|++|++++.
T Consensus 51 ~~~~-~~~~~dnDL~~~~~~~~-~~~Ge~i~v~GrV~D~~g~Pv~~a~V 97 (236)
T d3pccm_ 51 FSHL-GFGAHDHDLLLNFNNGG-LPIGERIIVAGRVVDQYGKPVPNTLV 97 (236)
T ss_dssp CTTS-CCCTTTTBTTTCC---C-CCSSCEEEEEEEEEETTSCBCTTCEE
T ss_pred CCcc-cCccccccceeccccCC-CCCCCEEEEEEEEECCCCCCcCCcEE
Confidence 5644 57888899843333333 34577899999999999999999874
No 9
>d1zswa1 d.32.1.10 (A:1-144) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}
Probab=25.04 E-value=20 Score=23.35 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=17.2
Q ss_pred EEEEEccCCceeccceEecCCCCCceeE
Q psy7947 124 TVQVCTEAGVILKVNAEFKSSDKTIQVT 151 (173)
Q Consensus 124 t~~V~~~~G~~Ie~cI~~gSg~~~vt~w 151 (173)
++.++|.+|..||=+-..+...++-++|
T Consensus 116 ~~yf~DPdG~~iEl~~~~~~~~~~w~~~ 143 (144)
T d1zswa1 116 ALQFEDAEGLRLVLLVSNGEKVEHWETW 143 (144)
T ss_dssp EEEEECTTCCEEEEEECTTCCCTTCCCC
T ss_pred EEEEECCCCCEEEEEEeCCCCCCCCCCC
Confidence 5889999999998333223333343343
No 10
>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.78 E-value=23 Score=25.52 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=21.5
Q ss_pred ccchh-hhcCCCCccc--------cCCCCCCceeEEee
Q psy7947 82 TNTFI-ARKMGFPEII--------LPGDVRNDLYVTLV 110 (173)
Q Consensus 82 ~~v~i-trKlGFpevI--------~Pgd~RNDlYvTL~ 110 (173)
++--+ +|+||||-|= +|.++++-+|++..
T Consensus 13 ~G~~~G~r~LGfPTANl~~~~~~~lp~~~~~GVY~~~v 50 (147)
T d1nb9a_ 13 RGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWA 50 (147)
T ss_dssp CCSSSCGGGGTCCCEECCHHHHHTSCTTSCSEEEEEEE
T ss_pred eCCccCCCccCcCCcCCcCchhhccccccccCceEEEE
Confidence 55566 4889999774 47889999996554
No 11
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas caviae [TaxId: 648]}
Probab=23.23 E-value=59 Score=21.24 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=10.0
Q ss_pred cchhhhcCCCCccccCC
Q psy7947 83 NTFIARKMGFPEIILPG 99 (173)
Q Consensus 83 ~v~itrKlGFpevI~Pg 99 (173)
+...+++.||++.|.||
T Consensus 37 D~~~A~~~g~~~~ia~g 53 (132)
T d1iq6a_ 37 DPAFAATTAFERPIVHG 53 (132)
T ss_dssp CHHHHTTSTTCSCBCCH
T ss_pred cHHHHhhcCCCceeeeh
Confidence 44555666666666553
No 12
>d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}
Probab=22.14 E-value=40 Score=21.26 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=21.7
Q ss_pred CCCcee-EEeeecee----eccCCceEEEEEEEccCCceeccc
Q psy7947 101 VRNDLY-VTLVNAEF----KSSDKTIQVTVQVCTEAGVILKVN 138 (173)
Q Consensus 101 ~RNDlY-vTL~~GeF----ks~~kNiEVt~~V~~~~G~~Ie~c 138 (173)
...|.| ++|..|.- -....+..+.+.+.+++|..+.-+
T Consensus 20 dd~D~y~f~l~~~~~v~i~l~~~~~~d~~l~lyd~~g~~~~~~ 62 (101)
T d1nqja_ 20 DSRDYYSFEVKEEGEVNIELDKKDEFGVTWTLHPESNINDRIT 62 (101)
T ss_dssp CCEEEEEEEESSCEEEEEEEEESSSSEEEEEEEECC----CCE
T ss_pred CcceEEEEECCCCCEEEEEEeCCccCCeEEEEEcCCCCEEEEe
Confidence 345777 78877654 122335567799999999866433
No 13
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=21.08 E-value=29 Score=22.68 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=17.9
Q ss_pred ceEEEEEEEccCCceeccceE
Q psy7947 120 TIQVTVQVCTEAGVILKVNAE 140 (173)
Q Consensus 120 NiEVt~~V~~~~G~~Ie~cI~ 140 (173)
-+.+++.|.|.+|++|++...
T Consensus 19 ~~t~tatv~D~~gnpv~g~~V 39 (94)
T d1cwva1 19 AITVEFTVADFEGKPLAGQEV 39 (94)
T ss_dssp CEEEEEEEECTTSCBCCSCEE
T ss_pred cEEEEEEEEcCCCCCcCCCEE
Confidence 578899999999999997654
No 14
>d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=20.21 E-value=28 Score=24.40 Aligned_cols=64 Identities=23% Similarity=0.275 Sum_probs=35.3
Q ss_pred ccccEEEEEEeecC-Cccc------cc------eeeccccchhhhcCCCCccccCCCCCCceeEEeeeceeeccCCceEE
Q psy7947 57 KSAGMYVSLKFHCG-DNKT------ES------VAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEFKSSDKTIQV 123 (173)
Q Consensus 57 ~~~gl~VsLkll~G-dl~q------en------P~L~~~~v~itrKlGFpevI~Pgd~RNDlYvTL~~GeFks~~kNiEV 123 (173)
....|.++.+.+.+ |=.. +| |.+|.|=..+ .+=| +-|+|-- =+|=|+||+.|| ..+|
T Consensus 22 ~~a~v~~s~~~~~~~dg~~~v~vtl~N~s~~~~pAff~rL~l~-d~~g--~~IlPv~-~sDNY~sL~PGE------~~~v 91 (122)
T d2vzsa2 22 GQSAVGATANSVAGADGTTTTTVTLKNTSGGRLPAFYVDSKVV-DSAG--KPVLPVE-WNDNAVSLWPGE------TTTL 91 (122)
T ss_dssp CCCCEEEEEEEEECTTSEEEEEEEEEECCSSSCCEEEEEEEEE-CTTS--CBCSSCE-ESSCSEEECTTC------EEEE
T ss_pred CCceEEEEEEEEecCCCcEEEEEEEEcCCCCccEEEEEEEEeE-cCCC--CEecceE-eeCCeEEEcCCC------eEEE
Confidence 45567777777643 3111 34 3444332222 2223 3455542 378899999999 5566
Q ss_pred EEEEEcc
Q psy7947 124 TVQVCTE 130 (173)
Q Consensus 124 t~~V~~~ 130 (173)
+++.-.+
T Consensus 92 ~i~~~~~ 98 (122)
T d2vzsa2 92 TAKYRTA 98 (122)
T ss_dssp EEEEEGG
T ss_pred EEEeccc
Confidence 6666544
Done!