RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7947
         (173 letters)



>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 93

 Score = 27.2 bits (60), Expect = 0.38
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 5  KKKKKKKKKKKKKKKNVRPLSPY 27
          + KK+  +KKK      R LS Y
Sbjct: 6  EPKKRTTRKKKDPNAPKRALSAY 28


>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
          binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 90

 Score = 26.1 bits (57), Expect = 1.1
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 5  KKKKKKKKKKKKKKKNVRPLSPY 27
            K  ++  K   +K  RP+S  
Sbjct: 6  SGKPSQEGGKGGSEKPKRPVSAM 28


>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 24.7 bits (54), Expect = 2.8
 Identities = 5/19 (26%), Positives = 6/19 (31%)

Query: 6  KKKKKKKKKKKKKKNVRPL 24
                +K   KKK    L
Sbjct: 2  SSGSSGRKPPPKKKMTGTL 20


>d1ncqc_ b.121.4.1 (C:) Rhinovirus coat proteins {Human rhinovirus B
           14 (HRV-14) [TaxId: 12131]}
          Length = 236

 Score = 25.9 bits (57), Expect = 3.0
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 7/59 (11%)

Query: 93  PEIILPGDVRN-------DLYVTLVNAEFKSSDKTIQVTVQVCTEAGVILKVNAEFKSS 144
           P I +PG V N       D  + + N   K    +  + +    +   +   N      
Sbjct: 32  PRIHIPGKVHNLLEIIQVDTLIPMNNTHTKDEVNSYLIPLNANRQNEQVFGTNLFIGDG 90


>d1l6pa_ b.1.17.1 (A:) Thiol:disulfide interchange protein DsbD,
           N-terminal domain (DsbD-alpha) {Escherichia coli [TaxId:
           562]}
          Length = 121

 Score = 25.3 bits (55), Expect = 3.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 133 VILKVNAEFKSSDKTIQVTVQVCTEAGV 160
           + L V     S+  T+ VT Q C +AG 
Sbjct: 78  LTLPVTINQASAGATLTVTYQGCADAGF 105


>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
          {Cow (Bos taurus) [TaxId: 9913]}
          Length = 336

 Score = 25.6 bits (56), Expect = 3.5
 Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 30 VVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFH 68
          V   C  + + +  K L +++ +    + A   V L  +
Sbjct: 20 VGDRCYDEKMYDAAKLLYNNVSNFG--RLASTLVHLGEY 56


>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
           phosphofructokinase {Lyme disease spirochete (Borrelia
           burgdorferi) [TaxId: 139]}
          Length = 550

 Score = 25.0 bits (54), Expect = 5.8
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 69  CGDNKTESVAVAMTNTFIARKMGFPEIILPGDVRNDLY 106
            G + + + A  +   F         I +P  +  DL 
Sbjct: 170 IGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLR 207


>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1449

 Score = 25.2 bits (54), Expect = 6.7
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 117  SDKTIQVTVQVCTEAGVILKVN-AEF-KSSDKTI-----QVTVQVCTEAGV 160
            + + + + V V T  G +  V    F +S+   +     + TV++  EAG 
Sbjct: 1363 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1413


>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
           (G) domain {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 341

 Score = 24.7 bits (53), Expect = 7.3
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 9/59 (15%)

Query: 2   FVQKKKKKKKKKKKKKKKNVR---------PLSPYHSVVKLCEKDNLENTLKRLISSLK 51
           F  K KK   K    + K +          P+    + +   +KD +   L++L   LK
Sbjct: 248 FNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLK 306


>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC,
           catalytic domain {Bacillus subtilis [TaxId: 1423]}
          Length = 275

 Score = 24.5 bits (52), Expect = 7.8
 Identities = 6/35 (17%), Positives = 15/35 (42%)

Query: 23  PLSPYHSVVKLCEKDNLENTLKRLISSLKDISSQK 57
                H+   +  +D+ EN +K +   +K +  + 
Sbjct: 228 ATRYIHTHAAMLHRDDYENAVKLITEVIKKLDRKT 262


>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella
           flexneri [TaxId: 623]}
          Length = 264

 Score = 24.5 bits (52), Expect = 8.6
 Identities = 2/31 (6%), Positives = 13/31 (41%)

Query: 27  YHSVVKLCEKDNLENTLKRLISSLKDISSQK 57
            H    + +  ++    + L + ++ ++ + 
Sbjct: 226 GHCAASIADCRDILQMEQLLSALIQRLTRET 256


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 578,082
Number of extensions: 24136
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 41
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)