BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy795
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 23 LKCGFKIGGGIDQDYKKSP--QGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFT 80
L GF IGGGIDQD ++P + TD GIYVT V + PA +GL++ DKI+Q NG+D T
Sbjct: 38 LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMT 97
Query: 81 MVTHKKAVDYIKK--HPVLNLLVARKGV 106
MVTH +A + K V+ LLV R+ +
Sbjct: 98 MVTHDQARKRLTKRSEEVVRLLVTRQSL 125
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 23 LKCGFKIGGGIDQDYKKSP--QGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFT 80
L GF IGGGIDQD ++P + TD GIYVT V + PA +GL++ DKI+Q NG+D T
Sbjct: 27 LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMT 86
Query: 81 MVTHKKAVDYIKK--HPVLNLLVARKGV 106
MVTH +A + K V+ LLV R+ +
Sbjct: 87 MVTHDQARKRLTKRSEEVVRLLVTRQSL 114
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 23 LKCGFKIGGGIDQDYKKSP--QGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFT 80
L GF IGGGIDQD ++P + TD GIYVT V + PA +GL++ DKI+Q NG+D T
Sbjct: 27 LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMT 86
Query: 81 MVTHKKAVDYIKK--HPVLNLLVARKGV 106
MVTH +A + K V+ LLV R+ +
Sbjct: 87 MVTHDQARKRLTKRSEEVVRLLVTRQSL 114
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 23 LKCGFKIGGGIDQDYKKSP--QGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFT 80
L GF IGGGIDQD ++P + TD GIYVT V + PA +GL++ DKI+Q NG+D T
Sbjct: 27 LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMT 86
Query: 81 MVTHKKAVDYIKK--HPVLNLLVARKGV 106
MVTH +A + K V+ LLV R+ +
Sbjct: 87 MVTHDQARKRLTKRSEEVVRLLVTRQSL 114
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 23 LKCGFKIGGGIDQDYKKSP--QGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFT 80
L GF IGGGIDQD ++P + TD GIYVT V + PA +GL++ DKI+Q NG+D T
Sbjct: 19 LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMT 78
Query: 81 MVTHKKAVDYIKK--HPVLNLLVARK 104
MVTH +A + K V+ LLV R+
Sbjct: 79 MVTHDQARKRLTKRSEEVVRLLVTRQ 104
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 23 LKCGFKIGGGIDQDYKKSP--QGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFT 80
L GF IGGGIDQD ++P + TD GIYVT V + PA +GL++ DKI+Q NG+D T
Sbjct: 28 LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMT 87
Query: 81 MVTHKKAVDYIKK--HPVLNLLVARK 104
MVTH +A + K V+ LLV R+
Sbjct: 88 MVTHDQARKRLTKRSEEVVRLLVTRQ 113
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 23 LKCGFKIGGGIDQDYKKSP--QGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFT 80
L GF IGGGIDQD ++P + TD GIYVT V + PA +GL++ DKI+Q NG+D T
Sbjct: 17 LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMT 76
Query: 81 MVTHKKAVDYIKK--HPVLNLLVARK 104
MVTH +A + K V+ LLV R+
Sbjct: 77 MVTHDQARKRLTKRSEEVVRLLVTRQ 102
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT 83
+ GF I GG+ + +P D+GI+VT V E PASK L+ DKI+Q NGY F +
Sbjct: 14 ELGFSISGGVGG--RGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIE 70
Query: 84 HKKAVDYIKK-HPVLNLLVARK 104
H +AV +K + L++ R+
Sbjct: 71 HGQAVSLLKTFQNTVELIIVRE 92
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG + + G + GI+V+++ D PA+K G L++HD+I++ NG D + T
Sbjct: 21 LGFNIIGG--RPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRAT 78
Query: 84 HKKAVDYIK--KHPVLNLLVAR 103
H +AV+ K K P++ ++ R
Sbjct: 79 HDQAVEAFKTAKEPIVVQVLRR 100
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT 83
+ GF I GG+ + +P D+GI+VT V E PASK L+ DKI+Q NGY F +
Sbjct: 22 ELGFSISGGVGG--RGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIE 78
Query: 84 HKKAVDYIKK-HPVLNLLVARK 104
H +AV +K + L++ R+
Sbjct: 79 HGQAVSLLKTFQNTVELIIVRE 100
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT 83
+ GF I GG+ + +P D+GI+VT V E PASK L+ DKI+Q NGY F +
Sbjct: 4 ELGFSISGGVGG--RGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIE 60
Query: 84 HKKAVDYIKK-HPVLNLLVARK 104
H +AV +K + L++ R+
Sbjct: 61 HGQAVSLLKTFQNTVELIIVRE 82
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT 83
+ GF I GG+ + +P D+GI+VT V E PASK L+ DKI+Q NGY F +
Sbjct: 3 ELGFSISGGVGG--RGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIE 59
Query: 84 HKKAVDYIKK-HPVLNLLVARK 104
H +AV +K + L++ R+
Sbjct: 60 HGQAVSLLKTFQNTVELIIVRE 81
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 10 AMECLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHD 69
+ME L+ R+ G I GG +P D GI+++ V +E PA+++G+R+ D
Sbjct: 1 SMEELTLTILRQTGGLGISIAGG----KGSTPYKGDDEGIFISRVSEEGPAARAGVRVGD 56
Query: 70 KILQCNGYDFTMVTHKKAVDYIK 92
K+L+ NG H +AV+ ++
Sbjct: 57 KLLEVNGVALQGAEHHEAVEALR 79
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 20 RRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDF 79
R+ G I GG +P D GI+++ V +E PA+++G+R+ DK+L+ NG
Sbjct: 23 RQTGGLGISIAGG----KGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVAL 78
Query: 80 TMVTHKKAVDYIK 92
H +AV+ ++
Sbjct: 79 QGAEHHEAVEALR 91
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP 95
G D GI+V V ++SPA+K GL D+IL+ N DFT + ++AV ++ P
Sbjct: 22 GGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 74
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP 95
G D GI+V V ++SPA+K GL D+IL+ N DFT + ++AV ++ P
Sbjct: 47 GGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 99
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 1 MAFQHQAGTAMECLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPA 60
+ FQ ++ P G GF I GG+ + DN IYVT++ D A
Sbjct: 18 LYFQSMTVVEIKLFKGPKG-----LGFSIAGGVGNQHIPG-----DNSIYVTKIIDGGAA 67
Query: 61 SKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
K G L++ D++L N Y VTH++AV +K
Sbjct: 68 QKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKN 101
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG DQ Y + D+GIYV+ + + A+ G L+ DKIL NG D +
Sbjct: 30 LGFNIVGGTDQQYVSN-----DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL 84
Query: 84 HKKAVDYIKK 93
H+ AVD +
Sbjct: 85 HQDAVDLFRN 94
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG DQ Y + D+GIYV+ + + A+ G L+ DKIL NG D +
Sbjct: 22 LGFNIVGGTDQQYVSN-----DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL 76
Query: 84 HKKAVDYIKK 93
H+ AVD +
Sbjct: 77 HQDAVDLFRN 86
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG DQ Y + D+GIYV+ + + A+ G L+ DKIL NG D +
Sbjct: 20 LGFNIVGGTDQQYVSN-----DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL 74
Query: 84 HKKAVDYIKK 93
H+ AVD +
Sbjct: 75 HQDAVDLFRN 84
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
Length = 194
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP 95
G D GI+V V ++SPA+K GL D+IL+ N DFT + ++AV ++ P
Sbjct: 20 GGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 72
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG D +P D GI++T++ A++ G LR++D IL+ N D + V+H
Sbjct: 23 GFSIAGGTD-----NPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSH 77
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
KAV+ +K+ ++ L V R+
Sbjct: 78 SKAVEALKEAGSIVRLYVRRR 98
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG D +P D+ I++T++ A++ G LR++D IL+ N D VTH
Sbjct: 15 GFSIAGGTD-----NPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTH 69
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
KAV+ +K+ ++ L V R+
Sbjct: 70 SKAVEALKEAGSIVRLYVKRR 90
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG D +P D+ I++T++ A++ G LR++D IL+ N D VTH
Sbjct: 25 GFSIAGGTD-----NPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTH 79
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
KAV+ +K+ ++ L V R+
Sbjct: 80 SKAVEALKEAGSIVRLYVKRR 100
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP 95
G D GI+V V ++SPA+K GL D+IL+ N DFT + ++AV ++ P
Sbjct: 27 GGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 79
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule
Complex With Connexin-45 Peptide
Length = 468
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP 95
G D GI+V V ++SPA+K GL D+IL+ N DFT + ++AV ++ P
Sbjct: 19 GGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 71
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 23 LKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKS-GLRMHDKILQCNGYDFTM 81
+ G I GG K+ G GI++ +V ++SPA K+ L+ DKIL+ +G D
Sbjct: 27 VSLGISIVGG-QTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQN 85
Query: 82 VTHKKAVDYIKK--HPVL 97
+H +AV+ IK +PV+
Sbjct: 86 ASHSEAVEAIKNAGNPVV 103
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz
Binding Motif
Length = 90
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 38 KKSPQGYTDN--------GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
+K PQGY N G Y+ V SPA++SGLR D++++ NG + + H + V
Sbjct: 11 RKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVA 70
Query: 90 YIK 92
IK
Sbjct: 71 SIK 73
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 6 QAGTAMECLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG- 64
+G + CL+ R GF I GG +P D GI+V+ + + A ++G
Sbjct: 5 SSGRHVACLA----RSERGLGFSIAGG----KGSTPYRAGDAGIFVSRIAEGGAAHRAGT 56
Query: 65 LRMHDKILQCNGYDFTMVTHKKAVDYI-KKHPVLNLLVARK 104
L++ D++L NG D T H AV + P + LL+ R+
Sbjct: 57 LQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLERE 97
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
G I GG + S G GI++ V ++SPA K+G L+ D+I++ +G D +
Sbjct: 18 LGISIVGGRGMGSRLS-NGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS 76
Query: 84 HKKAVDYIKK--HPVLNLL 100
H++AV+ I+K +PV+ ++
Sbjct: 77 HEQAVEAIRKAGNPVVFMV 95
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
G I GG + S G GI++ V ++SPA K+G L+ D+I++ +G D +
Sbjct: 38 LGISIVGGRGMGSRLS-NGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS 96
Query: 84 HKKAVDYIKK--HPVLNLL 100
H++AV+ I+K +PV+ ++
Sbjct: 97 HEQAVEAIRKAGNPVVFMV 115
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNL-LVARKG 105
GI+++ V S +++ GL + D+I++ NG DF+ + HK+AV+ +K L + +VA G
Sbjct: 42 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAG 100
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNL-LVARKG 105
GI+++ V S +++ GL + D+I++ NG DF+ + HK+AV+ +K L + +VA G
Sbjct: 28 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAG 86
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK--KHPVLNL 99
GIY+T V S A SGL++ D+IL+ NG F + H +AV +K +H +L +
Sbjct: 47 GIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTV 100
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 17 PDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCN 75
P G + L GF I GG+ + DN IYVT++ + A K G L++ DK+L N
Sbjct: 9 PRGSKGL--GFSIAGGVGNQHWPG-----DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 61
Query: 76 GYDFTMVTHKKAVDYIK 92
VTH++AV +K
Sbjct: 62 NVALEEVTHEEAVTALK 78
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTH 84
GF I GG + GIYV+ V S A K GLR+ D+IL+ N VTH
Sbjct: 23 LGFSIRGGSEHGV----------GIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTH 72
Query: 85 KKAVDYIKKHPVLNLLV 101
+AV +K L L V
Sbjct: 73 AEAVKALKGSKKLVLSV 89
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG+ + DN IYVT++ + A K G L++ DK+L N VT
Sbjct: 21 LGFSIAGGVGNQHWPG-----DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVT 75
Query: 84 HKKAVDYIK 92
H++AV +K
Sbjct: 76 HEEAVTALK 84
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG+ + DN IYVT++ + A K G L++ DK+L N VT
Sbjct: 16 LGFSIAGGVGNQHIPG-----DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVT 70
Query: 84 HKKAVDYIK 92
H++AV +K
Sbjct: 71 HEEAVTALK 79
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVAR 103
+G Y+ EV ++PA GL+ +D I+ NG ++V+ D IK+ LN++V R
Sbjct: 48 SGAYIIEVIPDTPAEAGGLKENDVIISINGQ--SVVSANDVSDVIKRESTLNMVVRR 102
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 17 PDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
P GR GF + GG + GI+V++V + S A ++GL + DKI + NG
Sbjct: 20 PAGR----LGFSVRGGSEHGL----------GIFVSKVEEGSSAERAGLCVGDKITEVNG 65
Query: 77 YDFTMVTHKKAVDYIKKHPVLNLLVARKG 105
T AV + L+++V R G
Sbjct: 66 LSLESTTMGSAVKVLTSSSRLHMMVRRMG 94
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG+ + DN IYVT++ + A K G L++ DK+L N VT
Sbjct: 16 LGFSIAGGVGNQHIPG-----DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVT 70
Query: 84 HKKAVDYIK 92
H++AV +K
Sbjct: 71 HEEAVTALK 79
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG+ + DN IYVT + + A K G L++ DK+L N VT
Sbjct: 16 LGFSIAGGVGNQHIPG-----DNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVT 70
Query: 84 HKKAVDYIK 92
H++AV +K
Sbjct: 71 HEEAVTALK 79
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT 83
+ GF I GG K+ Q GI++++V +S A ++GL+ D++L N DF +
Sbjct: 28 QLGFNIRGG------KASQ----LGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIE 77
Query: 84 HKKAVDYIKKHPVLNLLV 101
H KAV+ +K +++ V
Sbjct: 78 HSKAVEILKTAREISMRV 95
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 47 NGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP 95
N I + EVY+E A++ G L D+IL+ NG D +H++A+ +++ P
Sbjct: 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP 92
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 49 IYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP 95
I + EVY+E A K G L D+IL+ NG D TH +A++ +++ P
Sbjct: 32 IIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP 79
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of Pdz
Domain And Ligand Resonances
Length = 105
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVAR 103
+G Y+ EV ++PA GL+ +D I+ NG ++V+ D IK+ LN++V R
Sbjct: 35 SGAYIIEVIPDTPAEAGGLKENDVIISINGQ--SVVSANDVSDVIKRESTLNMVVRR 89
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG+ + DN IYVT++ + A K G L++ DK+L N VTH
Sbjct: 23 GFSIAGGVGNQHIPG-----DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH 77
Query: 85 KKAVDYIK 92
++AV +K
Sbjct: 78 EEAVTALK 85
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG+ + DN IYVT++ + A K G L++ DK+L N VTH
Sbjct: 13 GFSIAGGVGNQHIPG-----DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH 67
Query: 85 KKAVDYIK 92
++AV +K
Sbjct: 68 EEAVTALK 75
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
With Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
With Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 18 DGRRVLKCGFKIGGGIDQDYKKSPQ-GYTDNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
D R V+ C DQD K + DNGI+V V SPAS GLR D++LQ NG
Sbjct: 4 DPREVILCK-------DQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQING 56
Query: 77 YDFTMVTHKKAVDYIKK 93
+ + KA +K+
Sbjct: 57 ENCAGWSSDKAHKVLKQ 73
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG+ + DN IYVT++ + A K G L++ DK+L N VTH
Sbjct: 17 GFSIAGGVGNQHIPG-----DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTH 71
Query: 85 KKAVDYIK 92
++AV +K
Sbjct: 72 EEAVTALK 79
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG+ + DN IYVT++ + A K G L++ DK+L N VTH
Sbjct: 12 GFSIAGGVGNQHIPG-----DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTH 66
Query: 85 KKAVDYIK 92
++AV +K
Sbjct: 67 EEAVTALK 74
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG+ + DN IYVT++ + A K G L++ DK+L N VT
Sbjct: 24 LGFSIAGGVGNQHIPG-----DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVT 78
Query: 84 HKKAVDYIK 92
H++AV +K
Sbjct: 79 HEEAVTALK 87
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 18 DGRRVLKCGFKIGGGIDQDYKKSPQ-GYTDNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
D R V+ C DQD K + DNGI+V V SPAS GLR D++LQ NG
Sbjct: 4 DPREVILCK-------DQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQING 56
Query: 77 YDFTMVTHKKAVDYIKK 93
+ + KA +K+
Sbjct: 57 ENCAGWSSDKAHKVLKQ 73
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 9 TAMEC--LSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-L 65
T ME L P G GF I GGI + DN IY+T++ + A K G L
Sbjct: 3 TIMEVNLLKGPKG-----LGFSIAGGIGNQHIPG-----DNSIYITKIIEGGAAQKDGRL 52
Query: 66 RMHDKILQCNGYDFTMVTHKKAVDYIK 92
++ D++L N + V H++AV +K
Sbjct: 53 QIGDRLLAVNNTNLQDVRHEEAVASLK 79
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG+ + DN IYVT++ + A K G L++ DKIL N V
Sbjct: 113 LGFSIAGGVGNQHIPG-----DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVM 167
Query: 84 HKKAVDYIKK-HPVLNLLVAR 103
H+ AV +K + V+ L VA+
Sbjct: 168 HEDAVAALKNTYDVVYLKVAK 188
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG+ + DN IYVT++ + A K G L++ DKIL N V
Sbjct: 110 LGFSIAGGVGNQHIPG-----DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVM 164
Query: 84 HKKAVDYIKK-HPVLNLLVAR 103
H+ AV +K + V+ L VA+
Sbjct: 165 HEDAVAALKNTYDVVYLKVAK 185
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 30 GGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAV 88
G G+ +S + + D GI+V + + ASK G LR++D+++ NG +++A+
Sbjct: 19 GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAM 78
Query: 89 DYIK--------KHPVLNLLVARK 104
+ ++ K ++ L+VAR+
Sbjct: 79 ETLRRSMSTEGNKRGMIQLIVARR 102
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG+ + DN IYVT++ + A K G L++ DKIL N V
Sbjct: 120 LGFSIAGGVGNQHIPG-----DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVM 174
Query: 84 HKKAVDYIKK-HPVLNLLVAR 103
H+ AV +K + V+ L VA+
Sbjct: 175 HEDAVAALKNTYDVVYLKVAK 195
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG+ + DN IYVT++ + A K G L++ DKIL N V H
Sbjct: 168 GFSIAGGVGNQHIPG-----DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH 222
Query: 85 KKAVDYIKK-HPVLNLLVAR 103
+ AV +K + V+ L VA+
Sbjct: 223 EDAVAALKNTYDVVYLKVAK 242
Score = 33.9 bits (76), Expect = 0.025, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 18/84 (21%)
Query: 16 PPDGRRVL------KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMH 68
P + RR++ GF I GG D + GI+++ + PA SG LR
Sbjct: 305 PREPRRIVIHRGSTGLGFNIVGGEDGE-----------GIFISFILAGGPADLSGELRKG 353
Query: 69 DKILQCNGYDFTMVTHKKAVDYIK 92
D+IL NG D +H++A +K
Sbjct: 354 DQILSVNGVDLRNASHEQAAIALK 377
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 30 GGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAV 88
G G+ +S + + D GI+V + + ASK G LR++D+++ NG +++A+
Sbjct: 22 GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAM 81
Query: 89 DYIK--------KHPVLNLLVARK 104
+ ++ K ++ L+VAR+
Sbjct: 82 ETLRRSMSTEGNKRGMIQLIVARR 105
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG+ + DN IYVT++ + A K G L++ DKIL N V
Sbjct: 16 LGFSIAGGVGNQHIPG-----DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVM 70
Query: 84 HKKAVDYIKK-HPVLNLLVAR 103
H+ AV +K + V+ L VA+
Sbjct: 71 HEDAVAALKNTYDVVYLKVAK 91
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVAR 103
+G Y+ EV ++PA GL+ +D I+ NG ++V+ D IK+ LN++V R
Sbjct: 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQ--SVVSANDVSDVIKRESTLNMVVRR 308
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVAR 103
+G Y+ EV ++PA GL+ +D I+ NG ++V+ D IK+ LN++V R
Sbjct: 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQ--SVVSANDVSDVIKRESTLNMVVRR 308
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 50 YVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK---KHPVLNLL 100
+V+ V A ++G+R D+IL+ NG + THK+ VD I+ K +L +L
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 17 PDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCN 75
PDG GF I GG SP G D IYV V+ + AS+ G L+ D+I+ N
Sbjct: 35 PDG-----LGFSIVGGYG-----SPHG--DLPIYVKTVFAKGAASEDGRLKRGDQIIAVN 82
Query: 76 GYDFTMVTHKKAVDYIKK 93
G VTH++AV +K+
Sbjct: 83 GQSLEGVTHEEAVAILKR 100
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 49 IYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVARKGVT 107
+YV + ++ PA +SG +R+ D+IL+ NG + H +A++ IK L ++G T
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGET 110
Query: 108 ST 109
S
Sbjct: 111 SV 112
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 50 YVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK---KHPVLNLL 100
+V+ V A ++G+R D+IL+ NG + THK+ VD I+ K +L +L
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 50 YVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK---KHPVLNLL 100
+V+ V A ++G+R D+IL+ NG + THK+ VD I+ K +L +L
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG D + GI+V+ + PA SG LR D+IL NG + T
Sbjct: 28 LGFNIVGGEDGE-----------GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT 76
Query: 84 HKKAVDYIKK 93
H++A +K+
Sbjct: 77 HEQAAAALKR 86
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG ++YK +YV + ++ PA ++G +R+ D+I++ NG +TH
Sbjct: 25 GFSIRGG--REYKMD--------LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTH 74
Query: 85 KKAVDYIKKHPVLNLLVARKGVTS 108
+A++ IK L+ ++G S
Sbjct: 75 ARAIELIKSGGRRVRLLLKRGTGS 98
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG D + GI+V+ + PA SG LR D+IL NG + T
Sbjct: 25 LGFNIVGGEDGE-----------GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT 73
Query: 84 HKKAVDYIKK 93
H++A +K+
Sbjct: 74 HEQAAAALKR 83
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 13 CLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKI 71
C+ G R+ G I GG + + +P+ TD GI++++V A + G LR+ ++
Sbjct: 14 CIQKAPGERL---GISIRGGA-RGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRL 69
Query: 72 LQCNGYDFTMVTHKKAVDYIK 92
L+ N +TH +AV ++
Sbjct: 70 LEVNQQSLLGLTHGEAVQLLR 90
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 38 KKSPQGYTDN--------GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
KK P GY N G ++ V +SPA SGLR D+I++ NG H V
Sbjct: 11 KKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVS 70
Query: 90 YIK 92
I+
Sbjct: 71 AIR 73
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 38 KKSPQGYTDN--------GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
KK P GY N G ++ V +SPA SGLR D+I++ NG H V
Sbjct: 16 KKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVS 75
Query: 90 YIK 92
I+
Sbjct: 76 AIR 78
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 38 KKSPQGYTDN--------GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
KK P GY N G ++ V +SPA SGLR D+I++ NG H V
Sbjct: 16 KKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVS 75
Query: 90 YIK 92
I+
Sbjct: 76 AIR 78
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMH--DKILQCNGYDFTMV 82
G + GG++ + GIYV V + A G R+H D++L NG
Sbjct: 18 LGISVTGGVNTSVRHG-------GIYVKAVIPQGAAESDG-RIHKGDRVLAVNGVSLEGA 69
Query: 83 THKKAVDYIKKHPVLNLLVARKGVTST 109
THK+AV+ ++ + L+ KG + T
Sbjct: 70 THKQAVETLRNTGQVVHLLLEKGQSPT 96
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMH--DKILQCNGYDFTMV 82
G + GG++ + GIYV V + A G R+H D++L NG
Sbjct: 18 LGISVTGGVNTSVRHG-------GIYVKAVIPQGAAESDG-RIHKGDRVLAVNGVSLEGA 69
Query: 83 THKKAVDYIKKHPVLNLLVARKGVTST 109
THK+AV+ ++ + L+ KG + T
Sbjct: 70 THKQAVETLRNTGQVVHLLLEKGQSPT 96
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 38 KKSPQGYTDN--------GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
KK P GY N G ++ V +SPA SGLR D+I++ NG H V
Sbjct: 16 KKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVS 75
Query: 90 YIK 92
I+
Sbjct: 76 AIR 78
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 36 DYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
+ K SP T GI++ + +SPA G L++ D+IL NG D T + +D IK+
Sbjct: 27 EVKDSPNTKT-TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE 84
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 16 PPDGRRVL------KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMH 68
P + RR++ GF I GG D + GI+++ + PA SG LR
Sbjct: 12 PREPRRIVIHRGSTGLGFNIIGGEDGE-----------GIFISFILAGGPADLSGELRKG 60
Query: 69 DKILQCNGYDFTMVTHKKAVDYIKK 93
D+IL NG D +H++A +K
Sbjct: 61 DQILSVNGVDLRNASHEQAAIALKN 85
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 16 PPDGRRVL------KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMH 68
P + RR++ GF I GG D + GI+++ + PA SG LR
Sbjct: 12 PREPRRIVIHRGSTGLGFNIVGGEDGE-----------GIFISFILAGGPADLSGELRKG 60
Query: 69 DKILQCNGYDFTMVTHKKAVDYIKK 93
D+IL NG D +H++A +K
Sbjct: 61 DQILSVNGVDLRNASHEQAAIALKN 85
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 38 KKSPQGYTDN--------GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
+K P GY + G Y+ V SPA K+GL D++++ NG + TH++ V
Sbjct: 10 EKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVS 69
Query: 90 YIK 92
I+
Sbjct: 70 RIR 72
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 50 YVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
+V V++ SPA +GL D I NG + + H++ VD IK
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIK 82
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 38 KKSPQGYTDN--------GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
+K P GY + G Y+ V SPA K+GL D++++ NG + TH++ V
Sbjct: 10 EKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVS 69
Query: 90 YIK 92
I+
Sbjct: 70 RIR 72
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 50 YVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
+V V++ SPA +GL D I NG + + H++ VD IK
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIK 82
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 38 KKSPQGYTDN--------GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
+K P GY + G Y+ V SPA K+GL D++++ NG + TH++ V
Sbjct: 10 EKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVS 69
Query: 90 YIK 92
I+
Sbjct: 70 RIR 72
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 38 KKSPQGYTDN--------GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
+K P GY + G Y+ V SPA K+GL D++++ NG + TH++ V
Sbjct: 9 EKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVS 68
Query: 90 YIK 92
I+
Sbjct: 69 RIR 71
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASK-SGLRMHDKILQCNGYDFTMVT 83
GF I GG +Q+ SP IY++ V A + GL+ D++L NG
Sbjct: 18 LGFNIMGGKEQN---SP-------IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67
Query: 84 HKKAVDYIKKHPVLNLLVARKGVTS 108
H+KAV+ +K LV R G +S
Sbjct: 68 HEKAVELLKAAQGSVKLVVRSGPSS 92
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 48 GIYVTEVYDESPASKSGLRMH--DKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVARKG 105
GIYV V + A G R+H D++L NG THK+AV+ ++ + L+ KG
Sbjct: 43 GIYVKAVIPQGAAESDG-RIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 101
Query: 106 VTST 109
+ T
Sbjct: 102 QSPT 105
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 46 DNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVAR 103
D GIY++E+ S A+K G +R D+I+Q NG + A+ +++ +LL+AR
Sbjct: 47 DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIAR 105
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 43 GYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
G GI+++ + PA SG LR D+IL NG D +H++A +K
Sbjct: 31 GEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 82
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMH--DKILQCNGYDFTMV 82
G + GG++ + GIYV + + A G R+H D++L NG
Sbjct: 25 LGISVTGGVNTSVRH-------GGIYVKAIIPKGAAESDG-RIHKGDRVLAVNGVSLEGA 76
Query: 83 THKKAVDYIKKHPVLNLLVARKG 105
THK+AV+ ++ + L+ KG
Sbjct: 77 THKQAVETLRNTGQVVHLLLEKG 99
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMH--DKILQCNGYDFTMV 82
G + GG++ + GIYV + + A G R+H D++L NG
Sbjct: 17 LGISVTGGVNTSVRH-------GGIYVKAIIPKGAAESDG-RIHKGDRVLAVNGVSLEGA 68
Query: 83 THKKAVDYIKKHPVLNLLVARKG 105
THK+AV+ ++ + L+ KG
Sbjct: 69 THKQAVETLRNTGQVVHLLLEKG 91
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 43 GYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
G GI+++ + PA SG LR D+IL NG D +H++A +K
Sbjct: 26 GEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 77
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
DN ++V V ++ A ++G++ D+I++ NG T+VTH ++ +K
Sbjct: 27 DNPVFVQSVKEDGAAMRAGVQTGDRIIKVNG---TLVTHSNHLEVVK 70
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 48 GIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIK 92
G+Y+ + SPA+ G L + D+IL+ NG + + +AVD I+
Sbjct: 37 GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIR 82
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
GF I GG D + GI+V+ + PA SG L+ D+IL NG D +
Sbjct: 16 LGFNIVGGEDGE-----------GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGAS 64
Query: 84 HKKAVDYIK 92
H++A +K
Sbjct: 65 HEQAAAALK 73
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 49 IYVTEVYDESPASKS-GLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
I +++++ A +S LR+ D IL NG D TH +AV +K+
Sbjct: 31 ILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKR 76
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 50 YVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
Y+ V + A ++GLRM D +++ NG + V H++ V+ I++
Sbjct: 68 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ 111
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 34/59 (57%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVARKGV 106
G++++ + A GL++ D+I++ NGY + TH++ ++ I+ +++ V G+
Sbjct: 111 GLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKTVSIKVRHIGL 169
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp
(Grp1) In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp
(Grp1) In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 50 YVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
+V V++ SPA +GL D I NG + + H++ VD IK
Sbjct: 40 FVCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIK 82
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 50 YVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
Y+ V + A ++GLRM D +++ NG + V H++ V+ I++
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ 91
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
G ++ V SPA + LR D++++ NG + TH + V IK
Sbjct: 25 RGQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIK 70
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 50 YVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
Y+ V + A ++GLRM D +++ NG + V H++ V+ I++
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ 91
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK--HPVLNLLVARK 104
G+Y+T++ + A ++G+ D +++ NG + +H++ V+ +KK V+ LLV ++
Sbjct: 33 GVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKE 91
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 48 GIYVTEVYDESPASKSGLRMH--DKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVARKG 105
GIYV + + A G R+H D++L NG THK+AV+ ++ + L+ KG
Sbjct: 38 GIYVKAIIPKGAAESDG-RIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 96
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 30 GGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAV 88
G G+ KS + TD GI++ + A K G LRM+D+++ NG ++ +A+
Sbjct: 38 GLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAM 97
Query: 89 DYIKK 93
+ +++
Sbjct: 98 ETLRR 102
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G +GGG D D + V + + PA + G L + D +L NG +TH
Sbjct: 25 GLTLGGGRDV--------AGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTH 76
Query: 85 KKAVDYIKK-HPVLNLLVAR 103
+AV+ I+ P L+L++ R
Sbjct: 77 AQAVERIRAGGPQLHLVIRR 96
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 51 VTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
V V D PAS++GLR D I NG + H + V+ I K
Sbjct: 40 VWHVEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVVELILK 82
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 49 IYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLV 101
+YV V + ASK GL+ D+IL+ N + D++ + P L LLV
Sbjct: 46 LYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ-PSLGLLV 97
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKA 87
GIYV++V S A ++GL D++L+ NG + T ++A
Sbjct: 43 GIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQA 82
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
G ++ EV PA +GL D I++ NG + ++K VD I+
Sbjct: 32 GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQ 76
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 49 IYVTEVYDESPASK-SGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
I ++E++ PA + GL + D IL NG + HK+AV + +
Sbjct: 30 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 75
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
G ++ EV PA +GL D I++ NG + ++K VD I+
Sbjct: 28 GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQ 72
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 49 IYVTEVYDESPASK-SGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
I ++E++ PA + GL + D IL NG + HK+AV + +
Sbjct: 37 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 82
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
Length = 91
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
G ++ EV PA +GL D I++ NG + ++K VD I+
Sbjct: 28 GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQ 72
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
G G + ++ SPA +GL+ +D ++ NG + H V+ I+K
Sbjct: 25 GPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK 75
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Query: 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMH--DKILQCNGYDFTM 81
+ GF + GG DQ K P + V+ V +PA R++ D+++ NG D
Sbjct: 17 RFGFNVKGGYDQ---KMP-------VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 66
Query: 82 VTHKKAVDYIK----KHP-VLNLLVARKGVTST 109
TH + V +IK +H L LLV V ST
Sbjct: 67 HTHDQVVLFIKASCERHSGELMLLVRPNAVEST 99
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIY--VTEVYDESPASKSGLRMHDKILQCNGYDFTMVT 83
GF+I Q Y+ Q + ++ + ++ ++SPA +GL+ D + NG T
Sbjct: 30 GFEI-----QSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFT 84
Query: 84 HKKAVDYIK 92
+K+ VD I+
Sbjct: 85 YKQVVDLIR 93
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
Length = 89
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
G G + ++ SPA +GL+ +D ++ NG + H V+ I+K
Sbjct: 22 GPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK 72
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 49 IYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLV 101
+YV V + ASK GL+ D+IL+ N + D++ + P L LLV
Sbjct: 37 LYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ-PSLGLLV 88
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 49 IYVTEVYDESPASK-SGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
I ++E++ PA + GL + D IL NG + HK+AV + +
Sbjct: 55 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 100
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 49 IYVTEVYDESPASKS-GLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
I +++++ A ++ L + D IL NG D + TH +AV +KK
Sbjct: 105 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 150
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 51 VTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
V V D SPA ++GLR D I NG + H V+ + K
Sbjct: 38 VWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLK 80
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
G G + ++ SPA +GL+ +D ++ NG + H V+ I+K
Sbjct: 26 GPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK 76
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 49 IYVTEVYDESPASKS-GLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
I +++++ A ++ L + D IL NG D + TH +AV +KK
Sbjct: 32 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 77
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl
Receptor Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl
Receptor Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
+G + + + SPA K+GL D++L+ NG H + V+ ++K
Sbjct: 26 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK 72
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNG 76
+GIYV EV SP+ + G++ D I++ NG
Sbjct: 35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNG 64
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
+G + + + SPA K+GL D++L+ NG H + V+ ++K
Sbjct: 27 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK 73
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus
Pdz Domain-Containing Protein 1
Length = 114
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
+G + + + SPA K+GL D++L+ NG H + V+ ++K
Sbjct: 38 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK 84
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In
Complex With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 49 IYVTEVYDESPASKS-GLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
I +++++ A ++ L + D IL NG D + TH +AV +KK
Sbjct: 28 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 73
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 49 IYVTEVYDESPASKS-GLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
I +++++ A ++ L + D IL NG D + TH +AV +KK
Sbjct: 28 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 73
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 43 GYTDNG---IYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK-HPVLN 98
G+T +G ++ V SPA GLR D+IL N + +H+ V I K VL+
Sbjct: 16 GFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLH 75
Query: 99 LLVA 102
+++A
Sbjct: 76 MVIA 79
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Membrane
Associated Guanylate Kinase, C677s And C709s Double
Mutant
Length = 88
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 40 SPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP---V 96
SP G G V ++ D SP S+ GL+ D I++ N + +TH + VD + + P
Sbjct: 23 SPGG---GGQRVKQIVD-SPRSR-GLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSE 77
Query: 97 LNLLVARK 104
+ LLV R+
Sbjct: 78 VTLLVQRQ 85
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 48 GIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKH-PVLNLLVARKG 105
G+++ ++ + A++ G L +D++L NG+D T + A I+ +NL +AR G
Sbjct: 30 GVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPG 89
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMH--DKILQCNGYDFTM 81
+ GF + GG DQ K P + V+ V +PA R++ D+++ NG D
Sbjct: 30 RFGFNVKGGYDQ---KMP-------VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 79
Query: 82 VTHKKAVDYIK 92
TH + V +IK
Sbjct: 80 HTHDQVVLFIK 90
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMH--DKILQCNGYDFTM 81
+ GF + GG DQ K P + V+ V +PA R++ D+++ NG D
Sbjct: 28 RFGFNVKGGYDQ---KMP-------VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 77
Query: 82 VTHKKAVDYIK 92
TH + V +IK
Sbjct: 78 HTHDQVVLFIK 88
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 43 GYTDNG---IYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK--HPVL 97
G+T +G + V V A K+G++ D+I++ NG T +H + V IK + L
Sbjct: 22 GFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVAL 81
Query: 98 NLL 100
LL
Sbjct: 82 TLL 84
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 43 GYTDN--GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTH-KKAVDYIKKHPVLNL 99
GY ++ G V++V SPA +GL+ D I Q N T T K + ++ + +
Sbjct: 276 GYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKI 335
Query: 100 LVAR 103
+V R
Sbjct: 336 IVER 339
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 43 GYTDN--GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTH-KKAVDYIKKHPVLNL 99
GY ++ G V++V SPA +GL+ D I Q N T T K + ++ + +
Sbjct: 276 GYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKI 335
Query: 100 LVAR 103
+V R
Sbjct: 336 IVER 339
>pdb|3GYX|A Chain A, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|C Chain C, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|E Chain E, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|G Chain G, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|I Chain I, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|K Chain K, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
Length = 662
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 12 ECLSPPD-GRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDK 70
E +SP + R++KC + GGG+ Y S + D G ++ E+ +E + +H+
Sbjct: 531 EYISPKNFMMRLIKCTDEYGGGVGTYYNTS-KALLDTGFWLMEMLEEDSLKLAARDLHE- 588
Query: 71 ILQC 74
+L+C
Sbjct: 589 LLRC 592
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 43 GYTDN--GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTH-KKAVDYIKKHPVLNL 99
GY ++ G V++V SPA +GL+ D I Q N T T K + ++ + +
Sbjct: 276 GYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKI 335
Query: 100 LVAR 103
+V R
Sbjct: 336 IVER 339
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 43 GYTDN--GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTH-KKAVDYIKKHPVLNL 99
GY ++ G V++V SPA +GL+ D I Q N T T K + ++ + +
Sbjct: 276 GYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKI 335
Query: 100 LVAR 103
+V R
Sbjct: 336 IVER 339
>pdb|1M5Z|A Chain A, The Pdz7 Of Glutamate Receptor Interacting Protein Binds
To Its Target Via A Novel Hydrophobic Surface Area
Length = 91
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMHDKILQCN 75
G + G+YV + P GL+ +D++LQ N
Sbjct: 28 GLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVN 60
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 49 IYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
I+V +V + PA ++GL D+I++ NG T+ + + I+
Sbjct: 63 IFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQ 106
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G I GG D + +S + I +++V PA L+ +D++ NG V H
Sbjct: 25 GIAISGGRDNPHFQS----GETSIVISDVLKGGPAEGQ-LQENDRVAMVNGVSMDNVEHA 79
Query: 86 KAVDYIKK 93
AV ++K
Sbjct: 80 FAVQQLRK 87
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G I GG D + +S + I +++V PA L+ +D++ NG V H
Sbjct: 22 GIAISGGRDNPHFQS----GETSIVISDVLKGGPAEGQ-LQENDRVAMVNGVSMDNVEHA 76
Query: 86 KAVDYIKK 93
AV ++K
Sbjct: 77 FAVQQLRK 84
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G I GG D + +S + I +++V PA L+ +D++ NG V H
Sbjct: 22 GIAISGGRDNPHFQS----GETSIVISDVLKGGPAEGQ-LQENDRVAMVNGVSMDNVEHA 76
Query: 86 KAVDYIKK 93
AV ++K
Sbjct: 77 FAVQQLRK 84
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G I GG D + +S + I +++V PA L+ +D++ NG V H
Sbjct: 22 GIAISGGRDNPHFQS----GETSIVISDVLKGGPAEGQ-LQENDRVAMVNGVSMDNVEHA 76
Query: 86 KAVDYIKK 93
AV ++K
Sbjct: 77 FAVQQLRK 84
>pdb|2EAQ|A Chain A, Crystal Structure Of Pdz Domain Of Kiaa0858 (Lim),
Ms0793 From Homo Sapiens
Length = 90
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
GI+V V SPA S L++ D+I+ N F+ K+ + + K
Sbjct: 29 GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAK 74
>pdb|4EDJ|A Chain A, Crystal Structure Of The Grasp55 Grasp Domain With A
Phosphomimetic Mutation (S189d)
pdb|4EDJ|B Chain B, Crystal Structure Of The Grasp55 Grasp Domain With A
Phosphomimetic Mutation (S189d)
Length = 209
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMH-DKILQCNGYDFTMVTHKKAVDYIKKH 94
G +N +V EV SPA+ +GLR H D I+ G D M + I+ H
Sbjct: 108 GANENVWHVLEVESNSPAALAGLRPHSDYII---GADTVMNESEDLFSLIETH 157
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 51 VTEVYDESPASK-SGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
+ + D SPA + + L++ D+IL NG + H V IK
Sbjct: 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK 89
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 29 IGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
+G ++ + K+ + G +V++V S A+K+G++ D I NG
Sbjct: 268 MGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 29 IGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
+G ++ + K+ + G +V++V S A+K+G++ D I NG
Sbjct: 268 MGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 29 IGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
+G ++ + K+ + G +V++V S A+K+G++ D I NG
Sbjct: 268 MGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 29 IGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
+G ++ + K+ + G +V++V S A+K+G++ D I NG
Sbjct: 268 MGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 29 IGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
+G ++ + K+ + G +V++V S A+K+G++ D I NG
Sbjct: 268 MGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 30 GGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
G ++ + K+ + G +V++V S A+K+G++ D I NG
Sbjct: 269 GTELNSELAKAXKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 30 GGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
G ++ + K+ + G +V++V S A+K+G++ D I NG
Sbjct: 269 GTELNSELAKAXKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 30 GGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
G ++ + K+ + G +V++V S A+K+G++ D I NG
Sbjct: 269 GTELNSELAKAXKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G + GG D + ++ + I +++V PA L+ +D+++ NG V H
Sbjct: 29 GIAVSGGRDNPHFEN----GETSIVISDVLPGGPADGL-LQENDRVVMVNGTPMEDVLHS 83
Query: 86 KAVDYIKKHPVLNLLVARK 104
AV ++K + +V ++
Sbjct: 84 FAVQQLRKSGKIAAIVVKR 102
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMV 82
G I GG+ SP G D I++ ++ A+++ LR+ D+I+ G +
Sbjct: 37 SLGISIAGGVG-----SPLG--DVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGM 89
Query: 83 THKKAVDYIKK 93
TH +AV+ +K
Sbjct: 90 THTQAVNLLKN 100
>pdb|4FGM|A Chain A, Crystal Structure Of The Aminopeptidase N Family Protein
Q5qty1 From Idiomarina Loihiensis. Northeast Structural
Genomics Consortium Target Ilr60
Length = 597
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 37 YKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKIL 72
YK SPQG + V VY + A +GL DKI+
Sbjct: 491 YKASPQG-----LDVLNVYHDESAYHAGLSAGDKII 521
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 51 VTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
V V + SPA ++GL+ D I NG + H + ++ + K
Sbjct: 37 VWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLK 79
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCN 75
GI + EV SPA+++GL+ D I+ N
Sbjct: 364 GIKIDEVVKGSPAAQAGLQKDDVIIGVN 391
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
Length = 111
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 48 GIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
G+Y+ +V+D +PA+ G + D+I NG T + I++
Sbjct: 32 GLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQE 78
>pdb|3COL|A Chain A, Crystal Structure Of Putative Transcription Regulator From
Lactobacillus Plantarum
pdb|3COL|B Chain B, Crystal Structure Of Putative Transcription Regulator From
Lactobacillus Plantarum
Length = 196
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 49 IYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVA 102
+YV +VYD S A+ L + +I NG T+ A D + V NLL A
Sbjct: 91 LYVQQVYDYSLANPDSLTIIQQIKALNGQGXTI----SAADADPNNIVANLLTA 140
>pdb|3DWK|A Chain A, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|B Chain B, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|C Chain C, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|D Chain D, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
Length = 625
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 21 RVLKCGFKIGGGIDQDYKKSPQGYTDNGIY 50
VL+ G KI +D+D +K+ Q DNG +
Sbjct: 256 NVLQSGIKIYTNMDKDVQKTLQNDVDNGSF 285
>pdb|3RLE|A Chain A, Crystal Structure Of Grasp55 Grasp Domain (residues 7-208)
Length = 209
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMH 68
G +N +V EV SPA+ +GLR H
Sbjct: 108 GANENVWHVLEVESNSPAALAGLRPH 133
>pdb|3M8U|A Chain A, Crystal Structure Of Glutathione-Binding Protein A (Gbpa)
From Haemophilus Parasuis Sh0165 In Complex With
Glutathione Disulfide (Gssg)
Length = 522
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 35 QDYKKSPQGYTDNGIYVTEVYDESPAS 61
QDYK+SP GYT +Y T++ D+ A+
Sbjct: 490 QDYKQSPFGYT--YLYGTKLADKLAAA 514
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,565,950
Number of Sequences: 62578
Number of extensions: 145788
Number of successful extensions: 477
Number of sequences better than 100.0: 184
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 199
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)