Query psy795
Match_columns 109
No_of_seqs 117 out of 1570
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 22:56:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3553|consensus 99.9 3.9E-24 8.4E-29 123.8 4.5 107 1-107 2-119 (124)
2 PF00595 PDZ: PDZ domain (Also 99.6 6.4E-15 1.4E-19 83.8 9.0 73 21-102 8-81 (81)
3 KOG3550|consensus 99.5 4.3E-14 9.3E-19 88.0 7.6 76 17-102 95-172 (207)
4 PF13180 PDZ_2: PDZ domain; PD 99.5 1.1E-12 2.4E-17 74.8 9.5 72 24-108 2-76 (82)
5 KOG3209|consensus 99.4 1.2E-12 2.5E-17 97.7 7.8 85 11-105 897-982 (984)
6 smart00228 PDZ Domain present 99.4 1.4E-11 3.1E-16 69.9 10.0 73 23-105 12-85 (85)
7 cd00992 PDZ_signaling PDZ doma 99.4 2.4E-11 5.3E-16 68.7 10.1 70 22-101 11-81 (82)
8 cd00136 PDZ PDZ domain, also c 99.4 1.9E-11 4.1E-16 67.4 9.0 66 24-101 2-69 (70)
9 cd00988 PDZ_CTP_protease PDZ d 99.3 3.7E-11 8.1E-16 68.6 9.7 72 22-106 1-75 (85)
10 cd00991 PDZ_archaeal_metallopr 99.2 6E-10 1.3E-14 63.1 8.8 61 46-108 9-72 (79)
11 KOG3549|consensus 99.2 1.1E-10 2.4E-15 81.5 6.6 80 13-103 57-138 (505)
12 KOG3209|consensus 99.2 2.2E-10 4.8E-15 85.8 8.6 86 11-104 343-432 (984)
13 cd00990 PDZ_glycyl_aminopeptid 99.1 2.5E-09 5.5E-14 60.3 9.2 59 47-107 12-70 (80)
14 KOG3551|consensus 99.1 1.5E-10 3.3E-15 81.6 4.2 74 19-102 92-167 (506)
15 cd00987 PDZ_serine_protease PD 99.1 2.1E-09 4.7E-14 61.7 8.4 60 46-107 23-85 (90)
16 cd00989 PDZ_metalloprotease PD 99.1 3.8E-09 8.2E-14 59.3 9.0 59 47-107 12-72 (79)
17 PLN00049 carboxyl-terminal pro 99.0 5.9E-09 1.3E-13 74.8 10.9 82 19-107 81-164 (389)
18 TIGR00225 prc C-terminal pepti 98.9 1.1E-08 2.4E-13 72.1 9.6 74 20-106 48-123 (334)
19 COG0793 Prc Periplasmic protea 98.9 5.3E-09 1.2E-13 75.4 7.9 81 13-105 90-172 (406)
20 cd00986 PDZ_LON_protease PDZ d 98.9 1.5E-08 3.3E-13 57.1 8.2 60 46-108 7-69 (79)
21 KOG1892|consensus 98.9 4.3E-09 9.4E-14 81.2 7.0 90 8-105 929-1020(1629)
22 KOG3580|consensus 98.9 7.3E-09 1.6E-13 76.9 7.2 80 21-107 18-100 (1027)
23 KOG3571|consensus 98.9 8.1E-09 1.7E-13 75.0 7.1 85 11-104 250-339 (626)
24 TIGR02037 degP_htrA_DO peripla 98.8 2.9E-08 6.2E-13 72.0 8.0 61 46-108 256-319 (428)
25 TIGR01713 typeII_sec_gspC gene 98.8 8.3E-08 1.8E-12 65.5 9.3 63 46-108 190-253 (259)
26 PRK10139 serine endoprotease; 98.8 6.6E-08 1.4E-12 70.8 8.8 82 24-108 268-352 (455)
27 KOG3580|consensus 98.7 1.7E-08 3.6E-13 75.1 5.3 70 22-103 416-488 (1027)
28 PRK11186 carboxy-terminal prot 98.7 6.9E-08 1.5E-12 73.3 8.0 78 14-104 235-320 (667)
29 KOG3606|consensus 98.7 5.9E-08 1.3E-12 66.0 6.9 81 20-102 168-251 (358)
30 TIGR02037 degP_htrA_DO peripla 98.7 1.5E-07 3.2E-12 68.4 8.7 59 47-107 362-423 (428)
31 PRK10942 serine endoprotease; 98.7 1.5E-07 3.2E-12 69.3 8.7 61 46-108 310-373 (473)
32 TIGR00054 RIP metalloprotease 98.7 1.2E-07 2.6E-12 68.7 7.9 59 47-107 203-263 (420)
33 PRK10139 serine endoprotease; 98.7 1.6E-07 3.5E-12 68.7 8.5 59 47-107 390-449 (455)
34 KOG3542|consensus 98.7 7.8E-08 1.7E-12 72.5 6.7 82 12-103 537-618 (1283)
35 KOG3552|consensus 98.7 4.9E-08 1.1E-12 75.3 5.7 66 23-104 65-132 (1298)
36 TIGR02038 protease_degS peripl 98.6 1.8E-07 3.9E-12 66.4 7.8 61 46-108 277-340 (351)
37 PRK10898 serine endoprotease; 98.6 2.3E-07 5E-12 65.9 8.3 63 46-108 278-341 (353)
38 PRK10942 serine endoprotease; 98.6 2.8E-07 6.1E-12 67.8 8.5 59 47-107 408-467 (473)
39 PRK10779 zinc metallopeptidase 98.6 1.5E-07 3.2E-12 68.8 6.4 59 49-107 128-187 (449)
40 PRK10779 zinc metallopeptidase 98.6 3.9E-07 8.6E-12 66.6 8.0 58 48-107 222-281 (449)
41 KOG3651|consensus 98.5 1.2E-06 2.7E-11 60.6 7.7 79 13-102 7-87 (429)
42 TIGR03279 cyano_FeS_chp putati 98.2 4.2E-06 9E-11 60.7 6.1 54 51-107 2-56 (433)
43 TIGR02860 spore_IV_B stage IV 98.2 1.1E-05 2.3E-10 58.2 7.9 60 46-107 104-173 (402)
44 TIGR00054 RIP metalloprotease 98.2 4.3E-06 9.4E-11 60.8 5.9 57 47-105 128-185 (420)
45 PF04495 GRASP55_65: GRASP55/6 98.2 5.7E-05 1.2E-09 47.1 10.0 85 10-103 10-100 (138)
46 KOG3129|consensus 98.1 1.5E-05 3.2E-10 52.5 6.4 60 48-107 140-202 (231)
47 COG0265 DegQ Trypsin-like seri 98.0 3.8E-05 8.2E-10 54.4 8.2 63 46-108 269-332 (347)
48 COG3975 Predicted protease wit 97.9 2.5E-05 5.5E-10 57.6 5.8 30 48-77 463-492 (558)
49 KOG3605|consensus 97.9 1.2E-05 2.7E-10 60.4 3.4 72 11-99 737-809 (829)
50 PRK09681 putative type II secr 97.8 6.2E-05 1.3E-09 51.9 5.8 56 53-108 210-269 (276)
51 PF14685 Tricorn_PDZ: Tricorn 97.7 0.00033 7E-09 40.4 6.7 56 48-105 13-80 (88)
52 KOG0609|consensus 97.6 0.00029 6.3E-09 52.2 7.3 69 22-102 133-203 (542)
53 KOG0606|consensus 97.6 0.00018 3.8E-09 57.2 5.8 81 18-101 632-713 (1205)
54 KOG3605|consensus 97.6 7.7E-05 1.7E-09 56.4 3.4 74 20-102 654-732 (829)
55 KOG1320|consensus 97.5 0.00044 9.5E-09 50.9 6.5 59 46-106 397-458 (473)
56 COG3031 PulC Type II secretory 97.3 0.0007 1.5E-08 45.7 4.9 55 54-108 214-269 (275)
57 KOG1738|consensus 97.2 0.00079 1.7E-08 50.7 5.4 73 20-104 210-284 (638)
58 KOG3938|consensus 97.2 0.001 2.3E-08 45.6 5.0 85 3-102 120-208 (334)
59 COG3480 SdrC Predicted secrete 97.1 0.0023 4.9E-08 44.9 6.5 55 46-104 129-187 (342)
60 KOG1421|consensus 96.9 0.0053 1.1E-07 47.2 6.9 60 46-108 301-363 (955)
61 KOG3532|consensus 96.3 0.018 4E-07 44.4 6.7 54 48-103 399-453 (1051)
62 PF12812 PDZ_1: PDZ-like domai 95.0 0.1 2.2E-06 29.3 4.9 34 49-82 32-65 (78)
63 COG0750 Predicted membrane-ass 94.2 0.41 8.9E-06 34.2 7.6 54 50-103 132-188 (375)
64 KOG3834|consensus 92.7 0.36 7.8E-06 35.5 5.2 57 46-103 14-72 (462)
65 KOG4371|consensus 92.4 0.28 6E-06 39.8 4.6 80 13-105 1148-1228(1332)
66 KOG4371|consensus 90.5 0.3 6.4E-06 39.7 3.1 74 20-104 1254-1329(1332)
67 PF11874 DUF3394: Domain of un 90.5 0.74 1.6E-05 30.2 4.5 27 48-74 123-149 (183)
68 KOG4407|consensus 90.5 0.14 3.1E-06 42.4 1.4 53 49-101 145-198 (1973)
69 KOG4407|consensus 88.1 0.26 5.5E-06 41.0 1.3 79 16-95 50-143 (1973)
70 KOG2921|consensus 87.9 0.83 1.8E-05 33.5 3.6 39 44-82 217-256 (484)
71 KOG1421|consensus 86.6 3 6.4E-05 33.0 6.0 46 46-94 861-906 (955)
72 KOG3834|consensus 84.5 8 0.00017 28.8 7.1 51 50-103 112-166 (462)
73 KOG0792|consensus 77.2 0.95 2E-05 36.9 0.5 69 22-95 715-798 (1144)
74 COG5233 GRH1 Peripheral Golgi 38.5 24 0.00053 25.5 1.8 30 50-79 66-95 (417)
75 COG1625 Fe-S oxidoreductase, r 36.9 28 0.00062 25.8 2.0 33 50-82 4-37 (414)
76 PF14250 AbrB-like: AbrB-like 36.3 78 0.0017 17.5 4.1 28 45-72 26-60 (71)
77 COG1430 Uncharacterized conser 33.2 1.1E+02 0.0023 18.9 3.8 33 40-73 87-119 (126)
78 PRK03760 hypothetical protein; 31.9 43 0.00093 20.2 1.9 23 49-72 91-113 (117)
79 COG4100 Cystathionine beta-lya 30.6 37 0.00081 24.6 1.7 32 49-80 84-119 (416)
80 PRK04199 rpl10e 50S ribosomal 30.4 77 0.0017 20.7 3.0 48 58-105 118-168 (172)
81 PF01887 SAM_adeno_trans: S-ad 27.3 1E+02 0.0022 21.4 3.3 27 46-72 231-257 (258)
82 TIGR00739 yajC preprotein tran 25.6 60 0.0013 18.4 1.7 15 63-77 36-50 (84)
83 PF07497 Rho_RNA_bind: Rho ter 24.4 98 0.0021 17.4 2.4 24 46-73 28-51 (78)
84 PRK05585 yajC preprotein trans 23.4 63 0.0014 19.2 1.6 15 63-77 51-65 (106)
85 PRK05886 yajC preprotein trans 23.0 67 0.0015 19.3 1.6 15 63-77 37-51 (109)
86 PRK06531 yajC preprotein trans 22.4 63 0.0014 19.5 1.5 15 63-77 35-49 (113)
87 PF07591 PT-HINT: Pretoxin HIN 22.4 57 0.0012 19.9 1.3 15 65-79 77-91 (130)
88 KOG1703|consensus 20.2 29 0.00063 26.1 -0.4 57 47-103 21-78 (479)
No 1
>KOG3553|consensus
Probab=99.90 E-value=3.9e-24 Score=123.77 Aligned_cols=107 Identities=61% Similarity=0.935 Sum_probs=97.8
Q ss_pred CCcccCCCCceEEeeec-----------CCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCC
Q psy795 1 MAFQHQAGTAMECLSPP-----------DGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHD 69 (109)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-----------~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD 69 (109)
|||+|.|+.+++|+++. .+++..-+||.+-|+.+|+++++|+...+.|+||..|.+||||+.+||+.+|
T Consensus 2 ~a~~h~pG~aveclsi~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihD 81 (124)
T KOG3553|consen 2 MAMSHIPGQAVECLSIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHD 81 (124)
T ss_pred cccccCCCCceEEEEEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecc
Confidence 79999999999999988 3456678999999999999999999999999999999999999999999999
Q ss_pred EEEEECCEEeccccHHHHHHHhcCCCeEEEEEEeCCEe
Q psy795 70 KILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVARKGVT 107 (109)
Q Consensus 70 ~i~~vn~~~i~~~~~~~~~~~l~~~~~v~l~v~r~~~~ 107 (109)
.|+.+||-++.-++|+.++..+++.+.+.++|.|.+.+
T Consensus 82 KIlQvNG~DfTMvTHd~Avk~i~k~~vl~mLVaR~~l~ 119 (124)
T KOG3553|consen 82 KILQVNGWDFTMVTHDQAVKRITKEEVLRMLVARQSLQ 119 (124)
T ss_pred eEEEecCceeEEEEhHHHHHHhhHhHHHHHHHHhhccc
Confidence 99999999999999999999999877777777776543
No 2
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.62 E-value=6.4e-15 Score=83.83 Aligned_cols=73 Identities=33% Similarity=0.595 Sum_probs=65.7
Q ss_pred CcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC-eEEE
Q psy795 21 RVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNL 99 (109)
Q Consensus 21 ~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v~l 99 (109)
...+|||.+.++.+.. ..+++|..+.++|+|+++||++||+|++||+.++.++++.++...++.+. .+.|
T Consensus 8 ~~~~lG~~l~~~~~~~---------~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L 78 (81)
T PF00595_consen 8 GNGPLGFTLRGGSDND---------EKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTL 78 (81)
T ss_dssp TTSBSSEEEEEESTSS---------SEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEE
T ss_pred CCCCcCEEEEecCCCC---------cCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEE
Confidence 5679999999988830 35899999999999999999999999999999999999999999999998 8888
Q ss_pred EEE
Q psy795 100 LVA 102 (109)
Q Consensus 100 ~v~ 102 (109)
+|+
T Consensus 79 ~V~ 81 (81)
T PF00595_consen 79 TVQ 81 (81)
T ss_dssp EEE
T ss_pred EEC
Confidence 774
No 3
>KOG3550|consensus
Probab=99.54 E-value=4.3e-14 Score=88.04 Aligned_cols=76 Identities=28% Similarity=0.446 Sum_probs=68.7
Q ss_pred cCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHhcCCC
Q psy795 17 PDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP 95 (109)
Q Consensus 17 ~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~ 95 (109)
++.+...||||.+.|++.+ ..+|||+.++||+.|++.| |+.||+++++||.++.+..|+.++.+++...
T Consensus 95 elpktdeglgfnvmggkeq----------nspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~ 164 (207)
T KOG3550|consen 95 ELPKTDEGLGFNVMGGKEQ----------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV 164 (207)
T ss_pred ecCccccccceeeccCccc----------CCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhc
Confidence 3555667999999999997 7789999999999999998 9999999999999999999999999999887
Q ss_pred -eEEEEEE
Q psy795 96 -VLNLLVA 102 (109)
Q Consensus 96 -~v~l~v~ 102 (109)
.+.|.++
T Consensus 165 gsvklvvr 172 (207)
T KOG3550|consen 165 GSVKLVVR 172 (207)
T ss_pred CcEEEEEe
Confidence 8877764
No 4
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.47 E-value=1.1e-12 Score=74.76 Aligned_cols=72 Identities=31% Similarity=0.387 Sum_probs=55.7
Q ss_pred eecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCC--C-eEEEE
Q psy795 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH--P-VLNLL 100 (109)
Q Consensus 24 ~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~--~-~v~l~ 100 (109)
+||+.+....+ ..|++|..|.++|||+++||++||.|++||+.++.+. .+....+... + .+.++
T Consensus 2 ~lGv~~~~~~~-----------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~ 68 (82)
T PF13180_consen 2 GLGVTVQNLSD-----------TGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLT 68 (82)
T ss_dssp E-SEEEEECSC-----------SSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEE
T ss_pred EECeEEEEccC-----------CCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEE
Confidence 57777766555 4579999999999999999999999999999999655 4444554322 2 99999
Q ss_pred EEeCCEec
Q psy795 101 VARKGVTS 108 (109)
Q Consensus 101 v~r~~~~~ 108 (109)
+.|+++..
T Consensus 69 v~R~g~~~ 76 (82)
T PF13180_consen 69 VLRDGEEL 76 (82)
T ss_dssp EEETTEEE
T ss_pred EEECCEEE
Confidence 99998764
No 5
>KOG3209|consensus
Probab=99.40 E-value=1.2e-12 Score=97.66 Aligned_cols=85 Identities=28% Similarity=0.462 Sum_probs=72.6
Q ss_pred eEEeeecCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHH
Q psy795 11 MECLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVD 89 (109)
Q Consensus 11 ~~~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~ 89 (109)
..++.+++.++..||||+++|+... .-++||..+.+.+||.+.| +++||+|++|||....+++|..+++
T Consensus 897 ~~~~~VelErG~kGFGFSiRGGrey----------nM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIe 966 (984)
T KOG3209|consen 897 GDLYTVELERGAKGFGFSIRGGREY----------NMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIE 966 (984)
T ss_pred CCeeEEEeeccccccceEeeccccc----------ccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHH
Confidence 3455667778889999999999763 5678999999999999999 9999999999999999999999999
Q ss_pred HhcCCCeEEEEEEeCC
Q psy795 90 YIKKHPVLNLLVARKG 105 (109)
Q Consensus 90 ~l~~~~~v~l~v~r~~ 105 (109)
++++.+...+++.|++
T Consensus 967 lIk~gg~~vll~Lr~g 982 (984)
T KOG3209|consen 967 LIKQGGRRVLLLLRRG 982 (984)
T ss_pred HHHhCCeEEEEEeccC
Confidence 9999884444555554
No 6
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.38 E-value=1.4e-11 Score=69.90 Aligned_cols=73 Identities=41% Similarity=0.596 Sum_probs=61.6
Q ss_pred ceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC-eEEEEE
Q psy795 23 LKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLLV 101 (109)
Q Consensus 23 ~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v~l~v 101 (109)
..|||.+...... ..+++|..+.++++|+++||++||+|++||+.++.++.+.+....+.... .+.+.+
T Consensus 12 ~~~G~~~~~~~~~----------~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i 81 (85)
T smart00228 12 GGLGFSLVGGKDE----------GGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTV 81 (85)
T ss_pred CcccEEEECCCCC----------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 6889988765441 25799999999999999999999999999999999888888777777766 888888
Q ss_pred EeCC
Q psy795 102 ARKG 105 (109)
Q Consensus 102 ~r~~ 105 (109)
.|.+
T Consensus 82 ~r~~ 85 (85)
T smart00228 82 LRGG 85 (85)
T ss_pred EeCC
Confidence 8753
No 7
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.36 E-value=2.4e-11 Score=68.75 Aligned_cols=70 Identities=37% Similarity=0.606 Sum_probs=59.8
Q ss_pred cceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC-eEEEE
Q psy795 22 VLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLL 100 (109)
Q Consensus 22 ~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v~l~ 100 (109)
..+|||.+.+.... ..+++|..+.+++||+++||++||+|++||+.++..+++.++...++... .+.+.
T Consensus 11 ~~~~G~~~~~~~~~----------~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~ 80 (82)
T cd00992 11 GGGLGFSLRGGKDS----------GGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT 80 (82)
T ss_pred CCCcCEEEeCcccC----------CCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence 46899999876542 35799999999999999999999999999999999888999999988766 66665
Q ss_pred E
Q psy795 101 V 101 (109)
Q Consensus 101 v 101 (109)
+
T Consensus 81 v 81 (82)
T cd00992 81 V 81 (82)
T ss_pred E
Confidence 4
No 8
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.35 E-value=1.9e-11 Score=67.36 Aligned_cols=66 Identities=36% Similarity=0.554 Sum_probs=56.0
Q ss_pred eecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC--eEEEEE
Q psy795 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP--VLNLLV 101 (109)
Q Consensus 24 ~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~--~v~l~v 101 (109)
++||.+.+... .+++|..+.+++||+.+||++||+|++||+.++.++++.++...++... .+.|.+
T Consensus 2 ~~G~~~~~~~~------------~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE------------GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC------------CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 57888876554 3589999999999999999999999999999999998888888888764 666654
No 9
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.33 E-value=3.7e-11 Score=68.57 Aligned_cols=72 Identities=24% Similarity=0.382 Sum_probs=58.7
Q ss_pred cceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCC-C-eEEE
Q psy795 22 VLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH-P-VLNL 99 (109)
Q Consensus 22 ~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~-~-~v~l 99 (109)
+.++|+.+... ..+++|..+.+++||+++||++||+|++||+.++.++++.+....+... + .+.+
T Consensus 1 ~~~lG~~~~~~-------------~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l 67 (85)
T cd00988 1 FGGIGLELKYD-------------DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRL 67 (85)
T ss_pred CeEEEEEEEEc-------------CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEE
Confidence 35788887542 2458999999999999999999999999999999988777777777654 3 7888
Q ss_pred EEEeC-CE
Q psy795 100 LVARK-GV 106 (109)
Q Consensus 100 ~v~r~-~~ 106 (109)
.+.|. +.
T Consensus 68 ~v~r~~~~ 75 (85)
T cd00988 68 TLKRGDGE 75 (85)
T ss_pred EEEcCCCC
Confidence 88887 54
No 10
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.16 E-value=6e-10 Score=63.06 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=50.5
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCC--C-eEEEEEEeCCEec
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH--P-VLNLLVARKGVTS 108 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~--~-~v~l~v~r~~~~~ 108 (109)
..|++|..|.++|||+++||++||+|++||+.++.++ .+....+... + .+.+.+.|+++..
T Consensus 9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g~~~ 72 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPSTTKL 72 (79)
T ss_pred CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECCEEE
Confidence 5689999999999999999999999999999999865 4555555543 3 8889999988653
No 11
>KOG3549|consensus
Probab=99.16 E-value=1.1e-10 Score=81.52 Aligned_cols=80 Identities=25% Similarity=0.429 Sum_probs=70.2
Q ss_pred EeeecCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHh
Q psy795 13 CLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYI 91 (109)
Q Consensus 13 ~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l 91 (109)
.+.|++.. -+|||++|+||..- ..+++|+.+.+.-+|+..| |.+||-|++|||+.+..+.|+++++.+
T Consensus 57 tVtirRQ~-vGGlGLSIKGGaEH----------n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iL 125 (505)
T KOG3549|consen 57 TVTIRRQK-VGGLGLSIKGGAEH----------NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNIL 125 (505)
T ss_pred eEEEEeee-cCcceeeecccccc----------CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHH
Confidence 34444444 47999999999874 6789999999999999999 999999999999999999999999999
Q ss_pred cCCC-eEEEEEEe
Q psy795 92 KKHP-VLNLLVAR 103 (109)
Q Consensus 92 ~~~~-~v~l~v~r 103 (109)
++.+ .|+++|..
T Consensus 126 RNAGdeVtlTV~~ 138 (505)
T KOG3549|consen 126 RNAGDEVTLTVKH 138 (505)
T ss_pred HhcCCEEEEEeHh
Confidence 9999 88888853
No 12
>KOG3209|consensus
Probab=99.16 E-value=2.2e-10 Score=85.80 Aligned_cols=86 Identities=29% Similarity=0.368 Sum_probs=75.8
Q ss_pred eEEeeecCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHH
Q psy795 11 MECLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVD 89 (109)
Q Consensus 11 ~~~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~ 89 (109)
-+.++..+.+++.||||++.|+.+ ..++..+-|.+|.+++||++.| |..||.|+.||+..+.+.+|.++++
T Consensus 343 G~~ist~LvKg~~GFGfTliGGdd--------~~gDefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~ 414 (984)
T KOG3209|consen 343 GELISTKLVKGYMGFGFTLIGGDD--------VRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVK 414 (984)
T ss_pred CeEEEEEEeecccccceEEecCCc--------CCCCceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHH
Confidence 345677788899999999999885 2236678899999999999999 9999999999999999999999999
Q ss_pred HhcCCC---eEEEEEEeC
Q psy795 90 YIKKHP---VLNLLVARK 104 (109)
Q Consensus 90 ~l~~~~---~v~l~v~r~ 104 (109)
.+...+ .|.|.++|.
T Consensus 415 ~fqaiPvg~~V~L~lcRg 432 (984)
T KOG3209|consen 415 RFQAIPVGQSVDLVLCRG 432 (984)
T ss_pred HhhccccCCeeeEEEecC
Confidence 999884 899999985
No 13
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.09 E-value=2.5e-09 Score=60.26 Aligned_cols=59 Identities=27% Similarity=0.316 Sum_probs=47.1
Q ss_pred CCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCCeEEEEEEeCCEe
Q psy795 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVARKGVT 107 (109)
Q Consensus 47 ~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~~v~l~v~r~~~~ 107 (109)
.+++|..|.++|+|+.+||++||+|++||+.++.++ .+....+.....+.+.+.|.+..
T Consensus 12 ~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~--~~~l~~~~~~~~v~l~v~r~g~~ 70 (80)
T cd00990 12 GLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDAL--QDRLKEYQAGDPVELTVFRDDRL 70 (80)
T ss_pred CcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHH--HHHHHhcCCCCEEEEEEEECCEE
Confidence 458999999999999999999999999999999763 44444443323788888888764
No 14
>KOG3551|consensus
Probab=99.07 E-value=1.5e-10 Score=81.60 Aligned_cols=74 Identities=28% Similarity=0.412 Sum_probs=66.0
Q ss_pred CCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHhcCCC-e
Q psy795 19 GRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-V 96 (109)
Q Consensus 19 ~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~ 96 (109)
+...+|||++|+|+.++ .-+|+|+++.+|-+|++.+ |..||.|++|||.++.+.+|+++++.++..+ .
T Consensus 92 K~d~gGLGISIKGGreN----------kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGke 161 (506)
T KOG3551|consen 92 KQDAGGLGISIKGGREN----------KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKE 161 (506)
T ss_pred EecCCcceEEeecCccc----------CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCce
Confidence 34468999999999985 6779999999999999999 9999999999999999999999999999988 6
Q ss_pred EEEEEE
Q psy795 97 LNLLVA 102 (109)
Q Consensus 97 v~l~v~ 102 (109)
|.+.|.
T Consensus 162 V~levK 167 (506)
T KOG3551|consen 162 VLLEVK 167 (506)
T ss_pred eeeeee
Confidence 655553
No 15
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.06 E-value=2.1e-09 Score=61.68 Aligned_cols=60 Identities=32% Similarity=0.395 Sum_probs=48.4
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCC--C-eEEEEEEeCCEe
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH--P-VLNLLVARKGVT 107 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~--~-~v~l~v~r~~~~ 107 (109)
..|++|..+.+++||+++||++||.|++||+.++.++. +....+... + .+.+.+.|+++.
T Consensus 23 ~~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~--~~~~~l~~~~~~~~i~l~v~r~g~~ 85 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVA--DLRRALAELKPGDKVTLTVLRGGKE 85 (90)
T ss_pred CCEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECCEE
Confidence 45899999999999999999999999999999998663 333344332 4 788888898865
No 16
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.06 E-value=3.8e-09 Score=59.33 Aligned_cols=59 Identities=36% Similarity=0.462 Sum_probs=47.7
Q ss_pred CCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCC-C-eEEEEEEeCCEe
Q psy795 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH-P-VLNLLVARKGVT 107 (109)
Q Consensus 47 ~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~-~-~v~l~v~r~~~~ 107 (109)
.+++|..+.++++|+++||++||.|++||+.++.++ .+....+... . .+.+.+.|++..
T Consensus 12 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~~~ 72 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNGET 72 (79)
T ss_pred cCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECCEE
Confidence 447899999999999999999999999999999865 4444555443 3 788888887754
No 17
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=99.02 E-value=5.9e-09 Score=74.83 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=62.0
Q ss_pred CCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCC-C-e
Q psy795 19 GRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH-P-V 96 (109)
Q Consensus 19 ~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~-~-~ 96 (109)
.....|+|+.+.-.... .....+++|..|.++|||+++||++||+|++|||.++.+++..++...+... + .
T Consensus 81 ~~~~~GiG~~~~~~~~~-------~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~ 153 (389)
T PLN00049 81 KGAVTGVGLEVGYPTGS-------DGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSS 153 (389)
T ss_pred cCCceEEEEEEEEccCC-------CCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCE
Confidence 34467888887542220 0012368999999999999999999999999999999888777777766543 3 8
Q ss_pred EEEEEEeCCEe
Q psy795 97 LNLLVARKGVT 107 (109)
Q Consensus 97 v~l~v~r~~~~ 107 (109)
+.+++.|.+..
T Consensus 154 v~ltv~r~g~~ 164 (389)
T PLN00049 154 VELTLRRGPET 164 (389)
T ss_pred EEEEEEECCEE
Confidence 88898887754
No 18
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.94 E-value=1.1e-08 Score=72.08 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=58.9
Q ss_pred CCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCC-C-eE
Q psy795 20 RRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH-P-VL 97 (109)
Q Consensus 20 ~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~-~-~v 97 (109)
....++|+.+... ..+++|..|.++|||+++||++||+|++||+.++..++..+....+... + .+
T Consensus 48 ~~~~~lG~~~~~~-------------~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v 114 (334)
T TIGR00225 48 GSLEGIGIQVGMD-------------DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKV 114 (334)
T ss_pred CceEEEEEEEEEE-------------CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEE
Confidence 3456788877532 2358999999999999999999999999999999988766766666543 3 88
Q ss_pred EEEEEeCCE
Q psy795 98 NLLVARKGV 106 (109)
Q Consensus 98 ~l~v~r~~~ 106 (109)
.+++.|.++
T Consensus 115 ~l~v~R~g~ 123 (334)
T TIGR00225 115 SLEILRAGK 123 (334)
T ss_pred EEEEEeCCC
Confidence 899988764
No 19
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.93 E-value=5.3e-09 Score=75.41 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=68.1
Q ss_pred EeeecCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhc
Q psy795 13 CLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92 (109)
Q Consensus 13 ~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~ 92 (109)
.+...+..++.|+|..+.-... .++.|.++.+++||+++||++||.|+.|||.++.+++..+++..++
T Consensus 90 ~~~~~~~~~~~GiG~~i~~~~~------------~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~ir 157 (406)
T COG0793 90 EFRTDTSGEFGGIGIELQMEDI------------GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIR 157 (406)
T ss_pred HhhhhccccccceeEEEEEecC------------CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhC
Confidence 3445566678899988865431 3579999999999999999999999999999999998888898888
Q ss_pred CCC--eEEEEEEeCC
Q psy795 93 KHP--VLNLLVARKG 105 (109)
Q Consensus 93 ~~~--~v~l~v~r~~ 105 (109)
... .|.|++.|.+
T Consensus 158 G~~Gt~V~L~i~r~~ 172 (406)
T COG0793 158 GKPGTKVTLTILRAG 172 (406)
T ss_pred CCCCCeEEEEEEEcC
Confidence 876 8999999963
No 20
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.93 E-value=1.5e-08 Score=57.11 Aligned_cols=60 Identities=30% Similarity=0.508 Sum_probs=47.4
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcC--CC-eEEEEEEeCCEec
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK--HP-VLNLLVARKGVTS 108 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~--~~-~v~l~v~r~~~~~ 108 (109)
..|++|..|.++|||+. +|++||.|++||+.++.++ .+....+.. .+ .+.+.+.|.+...
T Consensus 7 ~~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~~~v~l~v~r~g~~~ 69 (79)
T cd00986 7 YHGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEA--EELIDYIQSKKEGDTVKLKVKREEKEL 69 (79)
T ss_pred ecCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence 35789999999999986 7999999999999999865 445555543 23 8889999987643
No 21
>KOG1892|consensus
Probab=98.91 E-value=4.3e-09 Score=81.23 Aligned_cols=90 Identities=23% Similarity=0.382 Sum_probs=74.5
Q ss_pred CCceEEeeecCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHH
Q psy795 8 GTAMECLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKK 86 (109)
Q Consensus 8 ~~~~~~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~ 86 (109)
..+.+-+.+++.+. +|+|++|+-...- +-...||||.+|.+|++|+-.| |..||++++|||..+.+++-+.
T Consensus 929 ~~~pei~~vtL~Kn-nGmGLSIVAAkGa-------Gq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQEr 1000 (1629)
T KOG1892|consen 929 RKEPEIITVTLKKN-NGMGLSIVAAKGA-------GQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQER 1000 (1629)
T ss_pred hcCCceEEEEEecc-CCceEEEEeeccC-------CccccceEEEEeccCCccccccccccCceeeeecCcccccccHHH
Confidence 34566667777776 8999998754331 1236899999999999999999 9999999999999999999999
Q ss_pred HHHHhcCCC-eEEEEEEeCC
Q psy795 87 AVDYIKKHP-VLNLLVARKG 105 (109)
Q Consensus 87 ~~~~l~~~~-~v~l~v~r~~ 105 (109)
+..++...+ .|.|-|.+.|
T Consensus 1001 AA~lmtrtg~vV~leVaKqg 1020 (1629)
T KOG1892|consen 1001 AARLMTRTGNVVHLEVAKQG 1020 (1629)
T ss_pred HHHHHhccCCeEEEehhhhh
Confidence 999998888 8888887654
No 22
>KOG3580|consensus
Probab=98.88 E-value=7.3e-09 Score=76.92 Aligned_cols=80 Identities=29% Similarity=0.431 Sum_probs=69.9
Q ss_pred CcceecEEEecccCCCCCCCCCCC-CCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHhcCCC-eE
Q psy795 21 RVLKCGFKIGGGIDQDYKKSPQGY-TDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VL 97 (109)
Q Consensus 21 ~~~~lG~~i~g~~~~~~~~~~~~~-~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v 97 (109)
+..|||+.|.|+.+ +|+.. ++.-|+|+.|.||+|| .| |+.+|.|+.|||.++.+..|.-+++.|+.++ ..
T Consensus 18 p~rGFGIAiSGGRD-----nPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A 90 (1027)
T KOG3580|consen 18 PKRGFGIAISGGRD-----NPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVA 90 (1027)
T ss_pred CCCcceeEeecCCC-----CCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHHHHhhccce
Confidence 34789999999999 57774 6777999999999999 46 9999999999999999999999999999999 77
Q ss_pred EEEEEeCCEe
Q psy795 98 NLLVARKGVT 107 (109)
Q Consensus 98 ~l~v~r~~~~ 107 (109)
.++|.|..+.
T Consensus 91 ~ItvkRprkv 100 (1027)
T KOG3580|consen 91 AITVKRPRKV 100 (1027)
T ss_pred eEEeccccee
Confidence 8888886543
No 23
>KOG3571|consensus
Probab=98.88 E-value=8.1e-09 Score=75.05 Aligned_cols=85 Identities=25% Similarity=0.331 Sum_probs=69.6
Q ss_pred eEEeeecCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHH
Q psy795 11 MECLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVD 89 (109)
Q Consensus 11 ~~~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~ 89 (109)
+-++.+.+.. .+.||++++|... ..++.||||..|.++++.+..| |.+||.|++||.+++.+++..++++
T Consensus 250 IITV~LnMe~-vnfLGiSivgqsn--------~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVr 320 (626)
T KOG3571|consen 250 IITVTLNMET-VNFLGISIVGQSN--------ARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVR 320 (626)
T ss_pred EEEEEecccc-cccceeEeecccC--------cCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHH
Confidence 3344444555 5789999999655 3358899999999999999999 9999999999999999999999999
Q ss_pred HhcCCC----eEEEEEEeC
Q psy795 90 YIKKHP----VLNLLVARK 104 (109)
Q Consensus 90 ~l~~~~----~v~l~v~r~ 104 (109)
.|+..- .+.|+|..-
T Consensus 321 vLREaV~~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 321 VLREAVSRPGPIKLTVAKC 339 (626)
T ss_pred HHHHHhccCCCeEEEEeec
Confidence 887653 677877653
No 24
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.80 E-value=2.9e-08 Score=72.04 Aligned_cols=61 Identities=31% Similarity=0.401 Sum_probs=48.9
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcC--CC-eEEEEEEeCCEec
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK--HP-VLNLLVARKGVTS 108 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~--~~-~v~l~v~r~~~~~ 108 (109)
..|++|..|.++|||+++||++||+|++||+.++.++. +....+.. .+ .+.+++.|+++..
T Consensus 256 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~--~~~~~l~~~~~g~~v~l~v~R~g~~~ 319 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFA--DLRRAIGTLKPGKKVTLGILRKGKEK 319 (428)
T ss_pred CCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 46899999999999999999999999999999998653 33333322 23 8899999988653
No 25
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.78 E-value=8.3e-08 Score=65.55 Aligned_cols=63 Identities=27% Similarity=0.290 Sum_probs=50.5
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccH-HHHHHHhcCCCeEEEEEEeCCEec
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTH-KKAVDYIKKHPVLNLLVARKGVTS 108 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~-~~~~~~l~~~~~v~l~v~r~~~~~ 108 (109)
..|+.|..+.++++++++||++||.|++|||.++.++.. .+.+..++....+.+.+.|+|...
T Consensus 190 ~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G~~~ 253 (259)
T TIGR01713 190 LEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDGQRE 253 (259)
T ss_pred eeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECCEEE
Confidence 468999999999999999999999999999999987632 233443433348899999998754
No 26
>PRK10139 serine endoprotease; Provisional
Probab=98.76 E-value=6.6e-08 Score=70.76 Aligned_cols=82 Identities=22% Similarity=0.184 Sum_probs=57.9
Q ss_pred eecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcC--CC-eEEEE
Q psy795 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK--HP-VLNLL 100 (109)
Q Consensus 24 ~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~--~~-~v~l~ 100 (109)
.||+.+....+...+.... ....|++|..|.++|||+++||++||+|++||+.++.++ .+....+.. .+ .+.+.
T Consensus 268 ~LGv~~~~l~~~~~~~lgl-~~~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~ 344 (455)
T PRK10139 268 LLGIKGTEMSADIAKAFNL-DVQRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLG 344 (455)
T ss_pred ceeEEEEECCHHHHHhcCC-CCCCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEE
Confidence 4566665543321111111 125689999999999999999999999999999999876 444444443 23 88999
Q ss_pred EEeCCEec
Q psy795 101 VARKGVTS 108 (109)
Q Consensus 101 v~r~~~~~ 108 (109)
+.|+++..
T Consensus 345 V~R~G~~~ 352 (455)
T PRK10139 345 LLRNGKPL 352 (455)
T ss_pred EEECCEEE
Confidence 99988653
No 27
>KOG3580|consensus
Probab=98.75 E-value=1.7e-08 Score=75.06 Aligned_cols=70 Identities=33% Similarity=0.564 Sum_probs=61.0
Q ss_pred cceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC---eEE
Q psy795 22 VLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP---VLN 98 (109)
Q Consensus 22 ~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~---~v~ 98 (109)
...+|+.+.|+.+ -||||..|..++||+..||+.||+|+.||.+++.++..++++..|..-+ .+.
T Consensus 416 GdSvGLRLAGGND------------VGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevt 483 (1027)
T KOG3580|consen 416 GDSVGLRLAGGND------------VGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVT 483 (1027)
T ss_pred CCeeeeEeccCCc------------eeEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEe
Confidence 4688999999988 5899999999999999999999999999999999999999988877654 666
Q ss_pred EEEEe
Q psy795 99 LLVAR 103 (109)
Q Consensus 99 l~v~r 103 (109)
++.++
T Consensus 484 ilaQ~ 488 (1027)
T KOG3580|consen 484 ILAQS 488 (1027)
T ss_pred ehhhh
Confidence 65443
No 28
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.72 E-value=6.9e-08 Score=73.29 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=59.9
Q ss_pred eeecCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhc-CCCCCCEEEEEC--CE---EeccccHHHH
Q psy795 14 LSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKS-GLRMHDKILQCN--GY---DFTMVTHKKA 87 (109)
Q Consensus 14 ~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~-Gl~~gD~i~~vn--~~---~i~~~~~~~~ 87 (109)
+.........|+|..+... ..+++|..|.+||||+++ ||++||.|++|| +. ++.++...++
T Consensus 235 f~~~~~~~~~GIGa~l~~~-------------~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~v 301 (667)
T PRK11186 235 FNTEMNLSLEGIGAVLQMD-------------DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDV 301 (667)
T ss_pred hhhccCCceeEEEEEEEEe-------------CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHH
Confidence 3444455567888887542 234799999999999998 799999999999 43 4557777888
Q ss_pred HHHhcCCC--eEEEEEEeC
Q psy795 88 VDYIKKHP--VLNLLVARK 104 (109)
Q Consensus 88 ~~~l~~~~--~v~l~v~r~ 104 (109)
+.+++... .|.|++.|.
T Consensus 302 v~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 302 VALIKGPKGSKVRLEILPA 320 (667)
T ss_pred HHHhcCCCCCEEEEEEEeC
Confidence 88888655 899999874
No 29
>KOG3606|consensus
Probab=98.72 E-value=5.9e-08 Score=65.96 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=65.6
Q ss_pred CCcceecEEEecccCCCCCCCCCCC-CCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHhcCCC-e
Q psy795 20 RRVLKCGFKIGGGIDQDYKKSPQGY-TDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-V 96 (109)
Q Consensus 20 ~~~~~lG~~i~g~~~~~~~~~~~~~-~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~ 96 (109)
.....|||.|+++.. .+-.|+.. .-.||||+...||+.|...| |-++|++++|||+.+.+.+.+++...+-... .
T Consensus 168 G~ekPLGFYIRDG~S--VRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshN 245 (358)
T KOG3606|consen 168 GSEKPLGFYIRDGTS--VRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHN 245 (358)
T ss_pred CCCCCceEEEecCce--EEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccc
Confidence 334689999998854 12234442 46799999999999999999 9999999999999999999999888877666 7
Q ss_pred EEEEEE
Q psy795 97 LNLLVA 102 (109)
Q Consensus 97 v~l~v~ 102 (109)
+.++|.
T Consensus 246 LIiTVk 251 (358)
T KOG3606|consen 246 LIITVK 251 (358)
T ss_pred eEEEec
Confidence 777775
No 30
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.69 E-value=1.5e-07 Score=68.37 Aligned_cols=59 Identities=32% Similarity=0.464 Sum_probs=49.5
Q ss_pred CCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCC--C-eEEEEEEeCCEe
Q psy795 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH--P-VLNLLVARKGVT 107 (109)
Q Consensus 47 ~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~--~-~v~l~v~r~~~~ 107 (109)
.|++|..|.++|+|+++||++||.|++||+.++.++ .+..+.+... + .+.+.+.|+++.
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~--~d~~~~l~~~~~g~~v~l~v~R~g~~ 423 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSV--AELRKVLDRAKKGGRVALLILRGGAT 423 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 689999999999999999999999999999999865 4445555432 3 889999999865
No 31
>PRK10942 serine endoprotease; Provisional
Probab=98.69 E-value=1.5e-07 Score=69.26 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=49.0
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcC--CC-eEEEEEEeCCEec
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK--HP-VLNLLVARKGVTS 108 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~--~~-~v~l~v~r~~~~~ 108 (109)
..|++|..|.++|||+++||+.||+|+++|+.++.++ .+....+.. .+ .+.+.+.|+++..
T Consensus 310 ~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~~~ 373 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKPV 373 (473)
T ss_pred CCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCeEE
Confidence 4689999999999999999999999999999999876 333333332 23 8889999988653
No 32
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.67 E-value=1.2e-07 Score=68.74 Aligned_cols=59 Identities=31% Similarity=0.420 Sum_probs=49.4
Q ss_pred CCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC--eEEEEEEeCCEe
Q psy795 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP--VLNLLVARKGVT 107 (109)
Q Consensus 47 ~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~--~v~l~v~r~~~~ 107 (109)
.++.|..|.++|||+++||++||+|++||+.++.++ ++....+.... .+.+.+.|+++.
T Consensus 203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVERNGET 263 (420)
T ss_pred cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEECCEE
Confidence 468999999999999999999999999999999865 55556665433 788999998865
No 33
>PRK10139 serine endoprotease; Provisional
Probab=98.67 E-value=1.6e-07 Score=68.72 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=50.3
Q ss_pred CCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC-eEEEEEEeCCEe
Q psy795 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLLVARKGVT 107 (109)
Q Consensus 47 ~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v~l~v~r~~~~ 107 (109)
.|++|..|.++|||+++||++||.|++||+.++.++ ++....+.... .+.+.+.|++..
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~v~l~v~R~g~~ 449 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRGNES 449 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECCEE
Confidence 589999999999999999999999999999999866 45556665545 888999998864
No 34
>KOG3542|consensus
Probab=98.66 E-value=7.8e-08 Score=72.54 Aligned_cols=82 Identities=30% Similarity=0.488 Sum_probs=69.1
Q ss_pred EEeeecCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHh
Q psy795 12 ECLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYI 91 (109)
Q Consensus 12 ~~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l 91 (109)
+.+.++.......+=|.+.||... ..||||..|.||+.|++.||+.||+|++||+.+..+.+...+...+
T Consensus 537 RqviLtk~sre~pl~f~L~GGsEk----------GfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiL 606 (1283)
T KOG3542|consen 537 RQVILTKASREDPLMFRLVGGSEK----------GFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEIL 606 (1283)
T ss_pred eeEEEecccccCCceeEeccCccc----------cceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHh
Confidence 334444434456788999998875 7889999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEEe
Q psy795 92 KKHPVLNLLVAR 103 (109)
Q Consensus 92 ~~~~~v~l~v~r 103 (109)
++...+.|+|..
T Consensus 607 rnnthLtltvKt 618 (1283)
T KOG3542|consen 607 RNNTHLTLTVKT 618 (1283)
T ss_pred cCCceEEEEEec
Confidence 988777777754
No 35
>KOG3552|consensus
Probab=98.66 E-value=4.9e-08 Score=75.28 Aligned_cols=66 Identities=26% Similarity=0.399 Sum_probs=57.8
Q ss_pred ceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHhcCCC-eEEEE
Q psy795 23 LKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLL 100 (109)
Q Consensus 23 ~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v~l~ 100 (109)
..|||.++-+.+ ++|..|.+|+|+ -| |++||+|++||+.++++..++.++++++.+. .|.|+
T Consensus 65 ~~lGFgfvagrP--------------viVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~lt 128 (1298)
T KOG3552|consen 65 ASLGFGFVAGRP--------------VIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLT 128 (1298)
T ss_pred ccccceeecCCc--------------eEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceE
Confidence 456665555555 899999999999 56 9999999999999999999999999999999 99999
Q ss_pred EEeC
Q psy795 101 VARK 104 (109)
Q Consensus 101 v~r~ 104 (109)
|.+.
T Consensus 129 V~qP 132 (1298)
T KOG3552|consen 129 VCQP 132 (1298)
T ss_pred Eecc
Confidence 9885
No 36
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.64 E-value=1.8e-07 Score=66.45 Aligned_cols=61 Identities=28% Similarity=0.400 Sum_probs=49.3
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcC--CC-eEEEEEEeCCEec
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK--HP-VLNLLVARKGVTS 108 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~--~~-~v~l~v~r~~~~~ 108 (109)
..|++|..|.+++||+++||++||.|++||+.++.++ .+....+.. .+ .+.+.+.|+++..
T Consensus 277 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~g~~~ 340 (351)
T TIGR02038 277 LRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLRQGKQL 340 (351)
T ss_pred cccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 3689999999999999999999999999999999865 333344432 23 8899999988653
No 37
>PRK10898 serine endoprotease; Provisional
Probab=98.64 E-value=2.3e-07 Score=65.93 Aligned_cols=63 Identities=27% Similarity=0.368 Sum_probs=49.0
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEEEECCEEecccc-HHHHHHHhcCCCeEEEEEEeCCEec
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT-HKKAVDYIKKHPVLNLLVARKGVTS 108 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~-~~~~~~~l~~~~~v~l~v~r~~~~~ 108 (109)
..|++|..|.++|||+++||++||+|++||+.++.++. ..+.+........+.+.+.|.++..
T Consensus 278 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 341 (353)
T PRK10898 278 LQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQL 341 (353)
T ss_pred CCeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 47999999999999999999999999999999997652 2233332222228899999988653
No 38
>PRK10942 serine endoprotease; Provisional
Probab=98.62 E-value=2.8e-07 Score=67.79 Aligned_cols=59 Identities=25% Similarity=0.404 Sum_probs=50.7
Q ss_pred CCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC-eEEEEEEeCCEe
Q psy795 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLLVARKGVT 107 (109)
Q Consensus 47 ~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v~l~v~r~~~~ 107 (109)
.|++|..|.++|+|+++||++||.|++||+.++.++ .+....+...+ .+.+++.|++..
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R~g~~ 467 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQRGDSS 467 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECCEE
Confidence 579999999999999999999999999999999876 55556666655 888999998864
No 39
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.59 E-value=1.5e-07 Score=68.81 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=45.8
Q ss_pred EEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC-eEEEEEEeCCEe
Q psy795 49 IYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLLVARKGVT 107 (109)
Q Consensus 49 i~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v~l~v~r~~~~ 107 (109)
.+|..|.++|||+++||++||+|+++||.++.++..-...-.....+ .+.+++.|+++.
T Consensus 128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~ 187 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSD 187 (449)
T ss_pred ccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCcc
Confidence 36899999999999999999999999999998774332222222233 789999998753
No 40
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.56 E-value=3.9e-07 Score=66.60 Aligned_cols=58 Identities=29% Similarity=0.423 Sum_probs=47.5
Q ss_pred CEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCC-C-eEEEEEEeCCEe
Q psy795 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH-P-VLNLLVARKGVT 107 (109)
Q Consensus 48 gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~-~-~v~l~v~r~~~~ 107 (109)
+++|..|.++|||+++||++||+|+++|+.++.++ .+....+... + .+.+.+.|+++.
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~ 281 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQGSP 281 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEECCEE
Confidence 47899999999999999999999999999999865 4444444443 3 788999998864
No 41
>KOG3651|consensus
Probab=98.46 E-value=1.2e-06 Score=60.56 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=62.6
Q ss_pred EeeecCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHh
Q psy795 13 CLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYI 91 (109)
Q Consensus 13 ~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l 91 (109)
.+.++... .+-+|+++.||.+. =.=+||.+|..++||++.| ++.||+|++|||+.+.+.+..++.+.+
T Consensus 7 ~v~ltKD~-~nliGISIGGGapy----------CPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmI 75 (429)
T KOG3651|consen 7 TVELTKDE-KNLIGISIGGGAPY----------CPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMI 75 (429)
T ss_pred cEEEeecc-ccceeEEecCCCCc----------CCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHH
Confidence 34444333 46789999998873 1125899999999999999 999999999999999998888888887
Q ss_pred cCCC-eEEEEEE
Q psy795 92 KKHP-VLNLLVA 102 (109)
Q Consensus 92 ~~~~-~v~l~v~ 102 (109)
.... .|.++..
T Consensus 76 Q~~~~eV~IhyN 87 (429)
T KOG3651|consen 76 QVSLNEVKIHYN 87 (429)
T ss_pred HHhccceEEEeh
Confidence 7766 7766653
No 42
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.21 E-value=4.2e-06 Score=60.72 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=41.1
Q ss_pred EEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCCeEEEEEE-eCCEe
Q psy795 51 VTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVA-RKGVT 107 (109)
Q Consensus 51 V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~~v~l~v~-r~~~~ 107 (109)
|..|.|+|+|+++||++||+|++|||.++.+| .+....+.. ..+.+.+. |.|+.
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw--~D~~~~l~~-e~l~L~V~~rdGe~ 56 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDL--IDYQFLCAD-EELELEVLDANGES 56 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHhcC-CcEEEEEEcCCCeE
Confidence 56789999999999999999999999999876 344444432 36677775 55543
No 43
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=98.20 E-value=1.1e-05 Score=58.22 Aligned_cols=60 Identities=27% Similarity=0.453 Sum_probs=45.2
Q ss_pred CCCEEEEEEC--------CCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCC-C-eEEEEEEeCCEe
Q psy795 46 DNGIYVTEVY--------DESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH-P-VLNLLVARKGVT 107 (109)
Q Consensus 46 ~~gi~V~~v~--------~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~-~-~v~l~v~r~~~~ 107 (109)
..|++|.... .++||+.+||++||.|++||+.++..+ .++.+.+... + .+.+.+.|+++.
T Consensus 104 t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~Ge~ 173 (402)
T TIGR02860 104 TKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERGGKI 173 (402)
T ss_pred cCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEECCEE
Confidence 4566665542 358999999999999999999999866 4455555543 3 888999998764
No 44
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.19 E-value=4.3e-06 Score=60.76 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=42.9
Q ss_pred CCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCC-CeEEEEEEeCC
Q psy795 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH-PVLNLLVARKG 105 (109)
Q Consensus 47 ~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~-~~v~l~v~r~~ 105 (109)
.+.+|..|.++|||+++||++||.|+++|+.++.++ .+..+.+... ..+.+.+.|.+
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~g 185 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAER 185 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEec
Confidence 567899999999999999999999999999999766 3333333332 35556666643
No 45
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.18 E-value=5.7e-05 Score=47.10 Aligned_cols=85 Identities=21% Similarity=0.196 Sum_probs=50.0
Q ss_pred ceEEeeecCCC---CcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCC-CCEEEEECCEEeccccHH
Q psy795 10 AMECLSPPDGR---RVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRM-HDKILQCNGYDFTMVTHK 85 (109)
Q Consensus 10 ~~~~~~~~~~~---~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~-gD~i~~vn~~~i~~~~~~ 85 (109)
..+.+.+..++ +..-||+++.-.... .....+..|..|.|+|||+.+||.+ .|.|+.+++..+.+. +
T Consensus 10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~-------~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~--~ 80 (138)
T PF04495_consen 10 TTREVSIVPSKKWGGQGLLGISVRFESFE-------GAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDE--D 80 (138)
T ss_dssp SEEEEEE---SSSSSSSSS-EEEEEEE-T-------TGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--ST--C
T ss_pred eEEEEEEccCcccCCCCCCcEEEEEeccc-------ccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCH--H
Confidence 34555555432 245678887654431 1235678899999999999999998 699999999777654 3
Q ss_pred HHHHHhcCCC--eEEEEEEe
Q psy795 86 KAVDYIKKHP--VLNLLVAR 103 (109)
Q Consensus 86 ~~~~~l~~~~--~v~l~v~r 103 (109)
+..+.+.... .+.|.|.+
T Consensus 81 ~l~~~v~~~~~~~l~L~Vyn 100 (138)
T PF04495_consen 81 DLFELVEANENKPLQLYVYN 100 (138)
T ss_dssp HHHHHHHHTTTS-EEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEEE
Confidence 3344444443 77787765
No 46
>KOG3129|consensus
Probab=98.10 E-value=1.5e-05 Score=52.53 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=43.4
Q ss_pred CEEEEEECCCChhhhcCCCCCCEEEEECCEEecccc-HHHHHHHhcCC-C-eEEEEEEeCCEe
Q psy795 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT-HKKAVDYIKKH-P-VLNLLVARKGVT 107 (109)
Q Consensus 48 gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~-~~~~~~~l~~~-~-~v~l~v~r~~~~ 107 (109)
-++|.+|.|+|||+.+||+.||.|+.+..+.-.+.. ....-...... . .+.++|.|.+..
T Consensus 140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~ 202 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK 202 (231)
T ss_pred eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence 368999999999999999999999999877654432 33322223333 2 778888887643
No 47
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3.8e-05 Score=54.42 Aligned_cols=63 Identities=27% Similarity=0.315 Sum_probs=48.7
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHH-HHHHHhcCCCeEEEEEEeCCEec
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK-KAVDYIKKHPVLNLLVARKGVTS 108 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~-~~~~~l~~~~~v~l~v~r~~~~~ 108 (109)
..|++|..+.+++||+++|++.||.|+++|+.++.+.... ..+........+.+.+.|.++..
T Consensus 269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~ 332 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGKER 332 (347)
T ss_pred CCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCEEE
Confidence 5679999999999999999999999999999999765322 22222221228899999987654
No 48
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.94 E-value=2.5e-05 Score=57.59 Aligned_cols=30 Identities=40% Similarity=0.490 Sum_probs=28.6
Q ss_pred CEEEEEECCCChhhhcCCCCCCEEEEECCE
Q psy795 48 GIYVTEVYDESPASKSGLRMHDKILQCNGY 77 (109)
Q Consensus 48 gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~ 77 (109)
+.+|..|.++|||+++||.+||.|++|||.
T Consensus 463 ~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~ 492 (558)
T COG3975 463 HEKITFVFPGGPAYKAGLSPGDKIVAINGI 492 (558)
T ss_pred eeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence 468999999999999999999999999998
No 49
>KOG3605|consensus
Probab=97.88 E-value=1.2e-05 Score=60.44 Aligned_cols=72 Identities=17% Similarity=0.336 Sum_probs=58.1
Q ss_pred eEEeeecCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHH
Q psy795 11 MECLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDY 90 (109)
Q Consensus 11 ~~~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~ 90 (109)
+.++.|.+..-..-|||++.. | +|.++..|+.|.+-|+++|++|++|||..+-...|+..+++
T Consensus 737 V~~V~I~RPd~kyQLGFSVQN----------------G-iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~l 799 (829)
T KOG3605|consen 737 VTTVLIRRPDLRYQLGFSVQN----------------G-IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQL 799 (829)
T ss_pred ceEEEeecccchhhccceeeC----------------c-EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHH
Confidence 455666666656779999843 2 47788999999999999999999999999999999999999
Q ss_pred hcCCC-eEEE
Q psy795 91 IKKHP-VLNL 99 (109)
Q Consensus 91 l~~~~-~v~l 99 (109)
|...- .|.|
T Consensus 800 Ls~aVGEIhM 809 (829)
T KOG3605|consen 800 LSNAVGEIHM 809 (829)
T ss_pred HHHhhhhhhh
Confidence 88764 4443
No 50
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.82 E-value=6.2e-05 Score=51.87 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=43.2
Q ss_pred EECCCC---hhhhcCCCCCCEEEEECCEEeccccH-HHHHHHhcCCCeEEEEEEeCCEec
Q psy795 53 EVYDES---PASKSGLRMHDKILQCNGYDFTMVTH-KKAVDYIKKHPVLNLLVARKGVTS 108 (109)
Q Consensus 53 ~v~~gs---~a~~~Gl~~gD~i~~vn~~~i~~~~~-~~~~~~l~~~~~v~l~v~r~~~~~ 108 (109)
.+.|+. --..+||++||.+++|||.++.+... .++++.++....+.++|.|+|...
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdGq~~ 269 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARH 269 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECCEEE
Confidence 345554 34568999999999999999976543 256666777679999999999764
No 51
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.70 E-value=0.00033 Score=40.45 Aligned_cols=56 Identities=29% Similarity=0.410 Sum_probs=35.1
Q ss_pred CEEEEEECCC--------ChhhhcC--CCCCCEEEEECCEEeccccHHHHHHHhcCCC--eEEEEEEeCC
Q psy795 48 GIYVTEVYDE--------SPASKSG--LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP--VLNLLVARKG 105 (109)
Q Consensus 48 gi~V~~v~~g--------s~a~~~G--l~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~--~v~l~v~r~~ 105 (109)
+..|..+.++ ||-...| +++||.|++|||.++.... ....+|.+.. .+.|++.+.+
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-ST
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCC
Confidence 4578888776 6777777 6799999999999996542 2334444443 8899998865
No 52
>KOG0609|consensus
Probab=97.64 E-value=0.00029 Score=52.17 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=58.6
Q ss_pred cceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHhcCCC-eEEE
Q psy795 22 VLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNL 99 (109)
Q Consensus 22 ~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v~l 99 (109)
...+|.+++..... .++|..+..|+.+.+.| |+.||+|.++||+.+.+..-.++...++... .+++
T Consensus 133 ~eplG~Tik~~e~~------------~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itf 200 (542)
T KOG0609|consen 133 GEPLGATIRVEEDT------------KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITF 200 (542)
T ss_pred CCccceEEEeccCC------------ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEE
Confidence 35678877765541 37999999999999999 9999999999999999998899999998887 8877
Q ss_pred EEE
Q psy795 100 LVA 102 (109)
Q Consensus 100 ~v~ 102 (109)
.+.
T Consensus 201 kii 203 (542)
T KOG0609|consen 201 KII 203 (542)
T ss_pred EEc
Confidence 764
No 53
>KOG0606|consensus
Probab=97.59 E-value=0.00018 Score=57.21 Aligned_cols=81 Identities=21% Similarity=0.141 Sum_probs=58.9
Q ss_pred CCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC-e
Q psy795 18 DGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-V 96 (109)
Q Consensus 18 ~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~ 96 (109)
......+|||++...+.. .+ -.....--..|..|.+++||..+|++.+|.|+.+||..+.+..|.++++++.+.+ .
T Consensus 632 i~~~~~~yGft~~airVy--~G-d~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~ 708 (1205)
T KOG0606|consen 632 IHFSGKKYGFTLRAIRVY--MG-DKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNK 708 (1205)
T ss_pred eeccccccCceeeeEEEe--cC-CcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCe
Confidence 344456888877654331 00 0000111246899999999999999999999999999999999999999988776 6
Q ss_pred EEEEE
Q psy795 97 LNLLV 101 (109)
Q Consensus 97 v~l~v 101 (109)
+.+.+
T Consensus 709 v~~~t 713 (1205)
T KOG0606|consen 709 VTLRT 713 (1205)
T ss_pred eEEEe
Confidence 55544
No 54
>KOG3605|consensus
Probab=97.56 E-value=7.7e-05 Score=56.36 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=53.2
Q ss_pred CCcceecEEEe-cccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHhcCCC--
Q psy795 20 RRVLKCGFKIG-GGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-- 95 (109)
Q Consensus 20 ~~~~~lG~~i~-g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-- 95 (109)
+....||.-|+ .++..+ -.=++|.+...++||+++| |..||+|++|||..+-++........+++.+
T Consensus 654 ~kGEiLGVViVESGWGSm---------LPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQ 724 (829)
T KOG3605|consen 654 HKGEILGVVIVESGWGSI---------LPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 724 (829)
T ss_pred ccCceeeEEEEecCcccc---------chHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccccc
Confidence 33467887654 333321 1125788899999999999 9999999999999998887776666666554
Q ss_pred -eEEEEEE
Q psy795 96 -VLNLLVA 102 (109)
Q Consensus 96 -~v~l~v~ 102 (109)
.|.|.|.
T Consensus 725 T~VkltiV 732 (829)
T KOG3605|consen 725 TAVKLNIV 732 (829)
T ss_pred ceEEEEEe
Confidence 5555543
No 55
>KOG1320|consensus
Probab=97.49 E-value=0.00044 Score=50.91 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=48.0
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC---eEEEEEEeCCE
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP---VLNLLVARKGV 106 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~---~v~l~v~r~~~ 106 (109)
.+++++++|.+++++...++.+||+|.+||+.++.+. .++...+..+. .+.+..+|..+
T Consensus 397 ~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~~e 458 (473)
T KOG1320|consen 397 VQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRSAE 458 (473)
T ss_pred eeEEEEEEeccCCCcccccccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecCcc
Confidence 4689999999999999999999999999999999987 45566666665 66666665544
No 56
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=97.27 E-value=0.0007 Score=45.71 Aligned_cols=55 Identities=29% Similarity=0.318 Sum_probs=40.2
Q ss_pred ECCCChhhhcCCCCCCEEEEECCEEecccc-HHHHHHHhcCCCeEEEEEEeCCEec
Q psy795 54 VYDESPASKSGLRMHDKILQCNGYDFTMVT-HKKAVDYIKKHPVLNLLVARKGVTS 108 (109)
Q Consensus 54 v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~-~~~~~~~l~~~~~v~l~v~r~~~~~ 108 (109)
..+++.-+..||+.||..+++|+.++.+-. -..+.+.+.....+.+++.|+|..+
T Consensus 214 gkd~slF~~sglq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R~G~rh 269 (275)
T COG3031 214 GKDGSLFYKSGLQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIRRGKRH 269 (275)
T ss_pred CCCcchhhhhcCCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEecCccc
Confidence 344466777899999999999999986532 2244555555558899999998653
No 57
>KOG1738|consensus
Probab=97.24 E-value=0.00079 Score=50.74 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=61.3
Q ss_pred CCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHhcCCC-eE
Q psy795 20 RRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VL 97 (109)
Q Consensus 20 ~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v 97 (109)
+...|+|+.|...-+ ..++|+.+.+++||.... |..||++++||+.-+.+|.+.-.+..+.... -|
T Consensus 210 kp~eglg~~I~Ssyd------------g~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi 277 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSYD------------GPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGI 277 (638)
T ss_pred CcccCCceEEeeecC------------CceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccc
Confidence 556789998866544 347899999999999999 9999999999999999999999999999888 66
Q ss_pred EEEEEeC
Q psy795 98 NLLVARK 104 (109)
Q Consensus 98 ~l~v~r~ 104 (109)
.+++..+
T Consensus 278 ~l~lkKr 284 (638)
T KOG1738|consen 278 ELTLKKR 284 (638)
T ss_pred eeeeecc
Confidence 6666543
No 58
>KOG3938|consensus
Probab=97.17 E-value=0.001 Score=45.56 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=62.3
Q ss_pred cccCCCCceEEeeecCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEecc
Q psy795 3 FQHQAGTAMECLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTM 81 (109)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~ 81 (109)
|-|.-+.+.| +++. +....||++|.++.. .=.||..+.++|.-.+.- +++||.|-+|||.++-+
T Consensus 120 FAHvkGq~kE-v~v~--KsedalGlTITDNG~------------GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG 184 (334)
T KOG3938|consen 120 FAHVKGQAKE-VEVV--KSEDALGLTITDNGA------------GYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVG 184 (334)
T ss_pred hhhhcCccee-EEEE--ecccccceEEeeCCc------------ceeeeEeecCCchhhhhhheeHHhHHHhhcCccccc
Confidence 4455444332 3333 233588999876543 125999999999999887 99999999999999999
Q ss_pred ccHHHHHHHhcCCC---eEEEEEE
Q psy795 82 VTHKKAVDYIKKHP---VLNLLVA 102 (109)
Q Consensus 82 ~~~~~~~~~l~~~~---~v~l~v~ 102 (109)
+-|.++...|+.-. ..+|.+.
T Consensus 185 ~RHYeVArmLKel~rge~ftlrLi 208 (334)
T KOG3938|consen 185 KRHYEVARMLKELPRGETFTLRLI 208 (334)
T ss_pred hhHHHHHHHHHhcccCCeeEEEee
Confidence 99999988888765 4555443
No 59
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.0023 Score=44.91 Aligned_cols=55 Identities=31% Similarity=0.535 Sum_probs=44.6
Q ss_pred CCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHhcCCC---eEEEEEEeC
Q psy795 46 DNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP---VLNLLVARK 104 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~---~v~l~v~r~ 104 (109)
-.|+|+..+..++++ .| |..||.|++|||.++... .+....++... .|++...|.
T Consensus 129 y~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s~--~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 129 YAGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTSS--DELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred EeeEEEEEccCCcch--hceeccCCeEEeeCCeecCCH--HHHHHHHhccCCCCeEEEEEEec
Confidence 567999999999998 46 999999999999999764 55566655554 899999873
No 60
>KOG1421|consensus
Probab=96.87 E-value=0.0053 Score=47.23 Aligned_cols=60 Identities=25% Similarity=0.304 Sum_probs=46.4
Q ss_pred CCC-EEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC--eEEEEEEeCCEec
Q psy795 46 DNG-IYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP--VLNLLVARKGVTS 108 (109)
Q Consensus 46 ~~g-i~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~--~v~l~v~r~~~~~ 108 (109)
+.| ++|..|.++||+++. |.+||.+++||+.-+.+. ..+.+.+-..- .+.|++.|+|.+.
T Consensus 301 ~tgmLvV~~vL~~gpa~k~-Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rggqel 363 (955)
T KOG1421|consen 301 RTGMLVVETVLPEGPAEKK-LEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGGQEL 363 (955)
T ss_pred cceeEEEEEeccCCchhhc-cCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCCEEE
Confidence 344 478889999999887 999999999998777654 45555554443 8999999998753
No 61
>KOG3532|consensus
Probab=96.33 E-value=0.018 Score=44.43 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=42.1
Q ss_pred CEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC-eEEEEEEe
Q psy795 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLLVAR 103 (109)
Q Consensus 48 gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v~l~v~r 103 (109)
-+.|..|.++++|.++.+.+||.+++||+.++... .++...++.-. .+...+.|
T Consensus 399 ~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s~--~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 399 AVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRSE--RQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred EEEEEEecCCChhhHhcCCCcceEEEecCccchhH--HHHHHHHHhcccceEEEEee
Confidence 46799999999999999999999999999999754 56666655544 55444444
No 62
>PF12812 PDZ_1: PDZ-like domain
Probab=95.00 E-value=0.1 Score=29.35 Aligned_cols=34 Identities=21% Similarity=0.008 Sum_probs=28.4
Q ss_pred EEEEEECCCChhhhcCCCCCCEEEEECCEEeccc
Q psy795 49 IYVTEVYDESPASKSGLRMHDKILQCNGYDFTMV 82 (109)
Q Consensus 49 i~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~ 82 (109)
.++.....++++...++..|-.|.+||+.++.++
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~L 65 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDL 65 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcCCcCH
Confidence 4555667888888777999999999999999876
No 63
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=94.16 E-value=0.41 Score=34.18 Aligned_cols=54 Identities=30% Similarity=0.342 Sum_probs=39.3
Q ss_pred EEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCCe---EEEEEEe
Q psy795 50 YVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPV---LNLLVAR 103 (109)
Q Consensus 50 ~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~~---v~l~v~r 103 (109)
.+..+...+++..+++++||.++++|+.++..++.-........... +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHHHHHHHHHhccCCcccceEEEEEe
Confidence 34478999999999999999999999999987743332222222223 6777777
No 64
>KOG3834|consensus
Probab=92.65 E-value=0.36 Score=35.50 Aligned_cols=57 Identities=28% Similarity=0.379 Sum_probs=42.6
Q ss_pred CCCEEEEEECCCChhhhcCCCC-CCEEEEECCEEeccccHHHHHHHhcCCC-eEEEEEEe
Q psy795 46 DNGIYVTEVYDESPASKSGLRM-HDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLLVAR 103 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~-gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v~l~v~r 103 (109)
..|..|.+|..+|+++++||.+ -|.|++||+..+... .+....+++... .|.+++..
T Consensus 14 teg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~sekVkltv~n 72 (462)
T KOG3834|consen 14 TEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANSEKVKLTVYN 72 (462)
T ss_pred ceeEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcccceEEEEEe
Confidence 5667899999999999999554 899999999988643 234445555554 77777654
No 65
>KOG4371|consensus
Probab=92.37 E-value=0.28 Score=39.85 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=56.3
Q ss_pred EeeecCCCCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhc
Q psy795 13 CLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92 (109)
Q Consensus 13 ~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~ 92 (109)
.+.....++...||..+.....+ +.++...-.+....-.|+.||.+..+|++.+...-+..++..++
T Consensus 1148 ~i~~~~~r~~~~l~~~~a~~~~~-------------~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~ 1214 (1332)
T KOG4371|consen 1148 VIDVELDRNEGSLGVQIASLSGR-------------VCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLR 1214 (1332)
T ss_pred cccccCCCCCCCCCceeccCccc-------------eehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHh
Confidence 34455666667788777655442 34444333322222239999999999999999888999988888
Q ss_pred CCC-eEEEEEEeCC
Q psy795 93 KHP-VLNLLVARKG 105 (109)
Q Consensus 93 ~~~-~v~l~v~r~~ 105 (109)
..+ .|.|-|.|..
T Consensus 1215 ~~~~~~~~~~~r~~ 1228 (1332)
T KOG4371|consen 1215 GGGDRVVLGVQRPP 1228 (1332)
T ss_pred ccCceEEEEeecCC
Confidence 888 8999998864
No 66
>KOG4371|consensus
Probab=90.51 E-value=0.3 Score=39.70 Aligned_cols=74 Identities=20% Similarity=0.389 Sum_probs=54.4
Q ss_pred CCcceecEEEecccCCCCCCCCCCCCCCCEEEEEECCCChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHhcCCC-eE
Q psy795 20 RRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VL 97 (109)
Q Consensus 20 ~~~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~~gs~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v 97 (109)
++-.++|+.+..... ..|+++..+...+.|...| ++.||.+...++.++...+-......++-.. .+
T Consensus 1254 ~p~~~~~~~~~~~~~-----------s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~ 1322 (1332)
T KOG4371|consen 1254 KPMATLGLSLAKRTM-----------SDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPV 1322 (1332)
T ss_pred cccccccccccccCc-----------CCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCch
Confidence 445677887766666 6789999999988888888 9999999999999997765544444444333 55
Q ss_pred EEEEEeC
Q psy795 98 NLLVARK 104 (109)
Q Consensus 98 ~l~v~r~ 104 (109)
.+++.|.
T Consensus 1323 ~~~~~~~ 1329 (1332)
T KOG4371|consen 1323 QITVTRE 1329 (1332)
T ss_pred hheehhh
Confidence 6666554
No 67
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=90.49 E-value=0.74 Score=30.16 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.8
Q ss_pred CEEEEEECCCChhhhcCCCCCCEEEEE
Q psy795 48 GIYVTEVYDESPASKSGLRMHDKILQC 74 (109)
Q Consensus 48 gi~V~~v~~gs~a~~~Gl~~gD~i~~v 74 (109)
.+.|..|..||+|.++|+..+.+|.++
T Consensus 123 ~~~Vd~v~fgS~A~~~g~d~d~~I~~v 149 (183)
T PF11874_consen 123 KVIVDEVEFGSPAEKAGIDFDWEITEV 149 (183)
T ss_pred EEEEEecCCCCHHHHcCCCCCcEEEEE
Confidence 379999999999999999999999876
No 68
>KOG4407|consensus
Probab=90.48 E-value=0.14 Score=42.42 Aligned_cols=53 Identities=32% Similarity=0.496 Sum_probs=46.1
Q ss_pred EEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC-eEEEEE
Q psy795 49 IYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLLV 101 (109)
Q Consensus 49 i~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v~l~v 101 (109)
+||..|.+.+|+..+.|+.||.++.+|..++.++.....+..++... .+.+.|
T Consensus 145 ~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~ 198 (1973)
T KOG4407|consen 145 IFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHV 198 (1973)
T ss_pred hhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCcee
Confidence 56888999999999999999999999999999998888888888877 555554
No 69
>KOG4407|consensus
Probab=88.10 E-value=0.26 Score=41.04 Aligned_cols=79 Identities=15% Similarity=0.010 Sum_probs=49.0
Q ss_pred ecCCCCcceecEEEecccCCCC---------CCCCCC------CCCCCEEEEEECCCChhhhcCCCCCCEEEEECCEEec
Q psy795 16 PPDGRRVLKCGFKIGGGIDQDY---------KKSPQG------YTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFT 80 (109)
Q Consensus 16 ~~~~~~~~~lG~~i~g~~~~~~---------~~~~~~------~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~ 80 (109)
+.+.++..||||+++.....++ .++..+ ....-+++.++..++++..+|+..+|.|+.|+|....
T Consensus 50 V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG~~s~~~v~~itG~e~~ 129 (1973)
T KOG4407|consen 50 VIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSGSSSSVGVAGITGLEPT 129 (1973)
T ss_pred EEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccCcccccceeeecccccC
Confidence 4467888999999986543110 000000 0112234566778889999999999999999999876
Q ss_pred cccHHHHHHHhcCCC
Q psy795 81 MVTHKKAVDYIKKHP 95 (109)
Q Consensus 81 ~~~~~~~~~~l~~~~ 95 (109)
.-+ ....-.++...
T Consensus 130 ~~T-S~~~~~vk~~e 143 (1973)
T KOG4407|consen 130 SPT-SLPPYQVKAME 143 (1973)
T ss_pred CCc-cccHHHHhhhh
Confidence 554 23333344443
No 70
>KOG2921|consensus
Probab=87.85 E-value=0.83 Score=33.47 Aligned_cols=39 Identities=33% Similarity=0.379 Sum_probs=32.6
Q ss_pred CCCCCEEEEEECCCChhhhc-CCCCCCEEEEECCEEeccc
Q psy795 44 YTDNGIYVTEVYDESPASKS-GLRMHDKILQCNGYDFTMV 82 (109)
Q Consensus 44 ~~~~gi~V~~v~~gs~a~~~-Gl~~gD~i~~vn~~~i~~~ 82 (109)
....|+.|..|...||..-- ||.+||.|.++|+.++...
T Consensus 217 a~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v 256 (484)
T KOG2921|consen 217 AHGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV 256 (484)
T ss_pred hcCceEEEEeccccCCCcCcccCCccceEEecCCcccCCH
Confidence 34678899999999888654 6999999999999999654
No 71
>KOG1421|consensus
Probab=86.63 E-value=3 Score=32.95 Aligned_cols=46 Identities=28% Similarity=0.284 Sum_probs=37.2
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCC
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH 94 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~ 94 (109)
..|+|+.....||||.. +|+....|+.|||..+.+. ++-+..++..
T Consensus 861 p~gvyvt~rg~gspalq-~l~aa~fitavng~~t~~l--ddf~~~~~~i 906 (955)
T KOG1421|consen 861 PEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTNTL--DDFYHMLLEI 906 (955)
T ss_pred CCceEEeecccCChhHh-hcchheeEEEecccccCcH--HHHHHHHhhC
Confidence 47899999999999998 8999999999999998765 3444444443
No 72
>KOG3834|consensus
Probab=84.54 E-value=8 Score=28.77 Aligned_cols=51 Identities=29% Similarity=0.347 Sum_probs=34.3
Q ss_pred EEEEECCCChhhhcCCC-CCCEEEEE-CCEEeccccHHHHHHHhcCCC--eEEEEEEe
Q psy795 50 YVTEVYDESPASKSGLR-MHDKILQC-NGYDFTMVTHKKAVDYIKKHP--VLNLLVAR 103 (109)
Q Consensus 50 ~V~~v~~gs~a~~~Gl~-~gD~i~~v-n~~~i~~~~~~~~~~~l~~~~--~v~l~v~r 103 (109)
-|.+|.+.+||+++||+ ..|-|+.+ +.+- . +.++...++.... .+.|.|..
T Consensus 112 Hvl~V~p~SPaalAgl~~~~DYivG~~~~~~-~--~~eDl~~lIeshe~kpLklyVYN 166 (462)
T KOG3834|consen 112 HVLSVEPNSPAALAGLRPYTDYIVGIWDAVM-H--EEEDLFTLIESHEGKPLKLYVYN 166 (462)
T ss_pred eeeecCCCCHHHhcccccccceEecchhhhc-c--chHHHHHHHHhccCCCcceeEee
Confidence 47889999999999977 78998876 4322 2 2345555554443 66666654
No 73
>KOG0792|consensus
Probab=77.18 E-value=0.95 Score=36.92 Aligned_cols=69 Identities=28% Similarity=0.396 Sum_probs=50.4
Q ss_pred cceecEEEecccCCCCCCCCCCCCCCCEEEEEEC-------------CCChhhhcC--CCCCCEEEEECCEEeccccHHH
Q psy795 22 VLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVY-------------DESPASKSG--LRMHDKILQCNGYDFTMVTHKK 86 (109)
Q Consensus 22 ~~~lG~~i~g~~~~~~~~~~~~~~~~gi~V~~v~-------------~gs~a~~~G--l~~gD~i~~vn~~~i~~~~~~~ 86 (109)
.+.+||.+.|+.++.- ....-++.++.+. |+++++... +..+|+++.+||.++....+..
T Consensus 715 ~g~~g~~~~g~~dq~~-----~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~ 789 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQ-----NLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQ 789 (1144)
T ss_pred Cccccccccchhhhhh-----ccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccc
Confidence 4678999999888521 1112234455555 888887765 8899999999999998888888
Q ss_pred HHHHhcCCC
Q psy795 87 AVDYIKKHP 95 (109)
Q Consensus 87 ~~~~l~~~~ 95 (109)
.+..++...
T Consensus 790 ~vs~irs~r 798 (1144)
T KOG0792|consen 790 VVSLIRSPR 798 (1144)
T ss_pred hHHHHhhhh
Confidence 888776553
No 74
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=38.53 E-value=24 Score=25.47 Aligned_cols=30 Identities=40% Similarity=0.434 Sum_probs=26.0
Q ss_pred EEEEECCCChhhhcCCCCCCEEEEECCEEe
Q psy795 50 YVTEVYDESPASKSGLRMHDKILQCNGYDF 79 (109)
Q Consensus 50 ~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i 79 (109)
-+..|.+.+++.++|.-.||-|+.+|+-++
T Consensus 66 ~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~ 95 (417)
T COG5233 66 EVLRVNPESPAEKAGMVVGDYILGINEDPL 95 (417)
T ss_pred hheeccccChhHhhccccceeEEeecCCcH
Confidence 356678889999999999999999998665
No 75
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=36.89 E-value=28 Score=25.82 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=27.7
Q ss_pred EEEEECCCChhhhcCCCCCCEEEEEC-CEEeccc
Q psy795 50 YVTEVYDESPASKSGLRMHDKILQCN-GYDFTMV 82 (109)
Q Consensus 50 ~V~~v~~gs~a~~~Gl~~gD~i~~vn-~~~i~~~ 82 (109)
.|+.+.+.+.++..|+..+|-+..|| +....++
T Consensus 4 ~i~~v~~~~~~d~~Gfe~~~~l~~Vn~~~~~~~c 37 (414)
T COG1625 4 KISKVGGISGADCDGFEEGDYLLKVNPGFGCKDC 37 (414)
T ss_pred ceeeccCCCcccccCccccceeeecCCCCCCCcC
Confidence 57788899999999999999999999 6555544
No 76
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=36.25 E-value=78 Score=17.45 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=18.8
Q ss_pred CCCCEEEEEECCCC-------hhhhcCCCCCCEEE
Q psy795 45 TDNGIYVTEVYDES-------PASKSGLRMHDKIL 72 (109)
Q Consensus 45 ~~~gi~V~~v~~gs-------~a~~~Gl~~gD~i~ 72 (109)
+++.-|..+|..++ ...+.+|+|||++.
T Consensus 26 GR~~syr~~Vq~NGnLLIG~AYT~~m~L~PGdEFe 60 (71)
T PF14250_consen 26 GRKASYRVSVQGNGNLLIGSAYTKQMGLKPGDEFE 60 (71)
T ss_pred CcCceEEEEEecCCCEEEcHHHHHHhCCCCCCEEE
Confidence 35555777766654 34556899999983
No 77
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=33.23 E-value=1.1e+02 Score=18.91 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=20.5
Q ss_pred CCCCCCCCCEEEEEECCCChhhhcCCCCCCEEEE
Q psy795 40 SPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQ 73 (109)
Q Consensus 40 ~~~~~~~~gi~V~~v~~gs~a~~~Gl~~gD~i~~ 73 (109)
.+.+.....-+|.++.. +.+++.++++||++-.
T Consensus 87 ~~~~~~~~~~yvLEl~~-G~~~~~~i~vGd~v~~ 119 (126)
T COG1430 87 YPCKSYGPVRYVLELPA-GWAARLGIKVGDRVEF 119 (126)
T ss_pred CCCCCCCCccEEEEecC-CchhhcCCccCCEEEe
Confidence 34343333347777644 4566678999999854
No 78
>PRK03760 hypothetical protein; Provisional
Probab=31.95 E-value=43 Score=20.22 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=17.6
Q ss_pred EEEEEECCCChhhhcCCCCCCEEE
Q psy795 49 IYVTEVYDESPASKSGLRMHDKIL 72 (109)
Q Consensus 49 i~V~~v~~gs~a~~~Gl~~gD~i~ 72 (109)
.+|.++ +.+.+++.|+.+||.|.
T Consensus 91 ~~VLEl-~aG~~~~~gi~~Gd~v~ 113 (117)
T PRK03760 91 RYIIEG-PVGKIRVLKVEVGDEIE 113 (117)
T ss_pred eEEEEe-CCChHHHcCCCCCCEEE
Confidence 467776 55667778999999984
No 79
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=30.61 E-value=37 Score=24.55 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=21.7
Q ss_pred EEEEEECCCC---hhhhcC-CCCCCEEEEECCEEec
Q psy795 49 IYVTEVYDES---PASKSG-LRMHDKILQCNGYDFT 80 (109)
Q Consensus 49 i~V~~v~~gs---~a~~~G-l~~gD~i~~vn~~~i~ 80 (109)
++--++..|. .++..| |++||+++.|-|.+-.
T Consensus 84 ~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYD 119 (416)
T COG4100 84 LVRPQIISGTHAIACALFGILRPGDELLYITGSPYD 119 (416)
T ss_pred eeeeeeecchhHHHHHHHhccCCCCeEEEecCCcch
Confidence 3444445554 455668 9999999999886543
No 80
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=30.38 E-value=77 Score=20.68 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=24.8
Q ss_pred ChhhhcC-CCCCCEEEEECCEEeccccHHHHHHHhcCC-C-eEEEEEEeCC
Q psy795 58 SPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKH-P-VLNLLVARKG 105 (109)
Q Consensus 58 s~a~~~G-l~~gD~i~~vn~~~i~~~~~~~~~~~l~~~-~-~v~l~v~r~~ 105 (109)
.|..-+- +++|+.|+++.+.........++....... + .+.+.+.+..
T Consensus 118 ~p~~wva~Vk~G~ilfei~~~~~~~~~akeAlr~a~~KLP~k~kiv~~~~~ 168 (172)
T PRK04199 118 KPVGTAARVEKGQKIFTVRVNPEHLEAAKEALRRAAMKLPTPCRIVVEKGK 168 (172)
T ss_pred CccEEEEEECcCCEEEEEEecCCCHHHHHHHHHHhhccCCCcEEEEEeccc
Confidence 3443333 789999999976544321223333333322 2 5555555443
No 81
>PF01887 SAM_adeno_trans: S-adenosyl-l-methionine hydroxide adenosyltransferase; InterPro: IPR002747 The S-adenosyl-L-methionine (SAM) hydroxide adenosyltransferase family groups several fluorinase and chlorinase enzymes whose common feature is that they mediate nucleophilic reactions of their respective halide ions to the C-5' carbon of SAM []. These enzymes utilise a rigorously conserved amino acid side chain triad (Asp-Arg-His) which may have a role in activating water to hydroxide ion. Structural studies indicate that the protein is a homotrimer, with each monomer being composed of N- and C-terminal domains [, ]. The N-terminal domain has a central seven-stranded beta-sheet, which combines parallel and antiparallel strands sandwiched between alpha helices. The C-terminal domain forms a beta-barrel with a greek-key topology. SAM is bound at the interface between the C-terminal domain of one monomer and the N-terminal domain of the neighbouring monomer, with a total of three molecules bound by the trimer.; PDB: 2CW5_C 1WU8_C 2WR8_A 2Q6O_B 2Q6L_A 2Q6K_A 2Q6I_A 2V7T_B 2C4U_F 1RQP_C ....
Probab=27.31 E-value=1e+02 Score=21.37 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=18.9
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEE
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKIL 72 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~ 72 (109)
..|.+=-.+..|++|...|++.||.|.
T Consensus 231 S~G~LEiAvn~G~Aa~~lgl~~Gd~V~ 257 (258)
T PF01887_consen 231 SSGYLEIAVNQGSAAELLGLKPGDRVR 257 (258)
T ss_dssp TTSEEEEEETTB-HHHHHT--TTSEEE
T ss_pred CCCCEEEEEeCcCHHHHcCCCCCCEEE
Confidence 455666678889999999999999873
No 82
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=25.58 E-value=60 Score=18.36 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=13.0
Q ss_pred cCCCCCCEEEEECCE
Q psy795 63 SGLRMHDKILQCNGY 77 (109)
Q Consensus 63 ~Gl~~gD~i~~vn~~ 77 (109)
+.|++||+++...|.
T Consensus 36 ~~L~~Gd~VvT~gGi 50 (84)
T TIGR00739 36 ESLKKGDKVLTIGGI 50 (84)
T ss_pred HhCCCCCEEEECCCe
Confidence 459999999998886
No 83
>PF07497 Rho_RNA_bind: Rho termination factor, RNA-binding domain; InterPro: IPR011113 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers [].; GO: 0003723 RNA binding, 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=24.45 E-value=98 Score=17.37 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=14.7
Q ss_pred CCCEEEEEECCCChhhhcCCCCCCEEEE
Q psy795 46 DNGIYVTEVYDESPASKSGLRMHDKILQ 73 (109)
Q Consensus 46 ~~gi~V~~v~~gs~a~~~Gl~~gD~i~~ 73 (109)
..-+||+. +-..+.+|+.||.|..
T Consensus 28 ~~DvYVs~----~qIrrf~LR~GD~V~G 51 (78)
T PF07497_consen 28 PDDVYVSP----SQIRRFGLRTGDLVEG 51 (78)
T ss_dssp TTSEEE-C----CCCCCTT--TTEEEEE
T ss_pred CCCEEECH----HHHHHcCCCCCCEEEE
Confidence 34478754 5566788999999974
No 84
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=23.43 E-value=63 Score=19.17 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=13.1
Q ss_pred cCCCCCCEEEEECCE
Q psy795 63 SGLRMHDKILQCNGY 77 (109)
Q Consensus 63 ~Gl~~gD~i~~vn~~ 77 (109)
..|++||+|+.+.|+
T Consensus 51 ~~Lk~Gd~VvT~gGi 65 (106)
T PRK05585 51 SSLAKGDEVVTNGGI 65 (106)
T ss_pred HhcCCCCEEEECCCe
Confidence 459999999998886
No 85
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=22.97 E-value=67 Score=19.26 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=13.1
Q ss_pred cCCCCCCEEEEECCE
Q psy795 63 SGLRMHDKILQCNGY 77 (109)
Q Consensus 63 ~Gl~~gD~i~~vn~~ 77 (109)
+.|++||+++...|.
T Consensus 37 ~~Lk~GD~VvT~gGi 51 (109)
T PRK05886 37 ESLQPGDRVHTTSGL 51 (109)
T ss_pred HhcCCCCEEEECCCe
Confidence 459999999998886
No 86
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=22.42 E-value=63 Score=19.50 Aligned_cols=15 Identities=13% Similarity=0.437 Sum_probs=12.9
Q ss_pred cCCCCCCEEEEECCE
Q psy795 63 SGLRMHDKILQCNGY 77 (109)
Q Consensus 63 ~Gl~~gD~i~~vn~~ 77 (109)
+.|++||.|+.+.|+
T Consensus 35 ~sLk~GD~VvT~GGi 49 (113)
T PRK06531 35 NAIQKGDEVVTIGGL 49 (113)
T ss_pred HhcCCCCEEEECCCc
Confidence 459999999998886
No 87
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=22.40 E-value=57 Score=19.90 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=10.1
Q ss_pred CCCCCEEEEECCEEe
Q psy795 65 LRMHDKILQCNGYDF 79 (109)
Q Consensus 65 l~~gD~i~~vn~~~i 79 (109)
|++||+|+..+|...
T Consensus 77 L~~GD~L~~~~G~~~ 91 (130)
T PF07591_consen 77 LKVGDRLLTADGSWV 91 (130)
T ss_dssp --TTSEEEEE-SSEE
T ss_pred CCCCCEEEcCCCCEE
Confidence 999999999988643
No 88
>KOG1703|consensus
Probab=20.16 E-value=29 Score=26.10 Aligned_cols=57 Identities=25% Similarity=0.242 Sum_probs=43.7
Q ss_pred CCEEEEEECCCChhhhcCCCCCCEEEEECCEEeccccHHHHHHHhcCCC-eEEEEEEe
Q psy795 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLLVAR 103 (109)
Q Consensus 47 ~gi~V~~v~~gs~a~~~Gl~~gD~i~~vn~~~i~~~~~~~~~~~l~~~~-~v~l~v~r 103 (109)
..+.+..+.+++.++.+.+..+|.+..+++..-..+.+.+......... ...+.+.|
T Consensus 21 ~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 78 (479)
T KOG1703|consen 21 QPLRILRVTPGGKAADAELDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSR 78 (479)
T ss_pred cccceeccCCCCccccccccccccccccccccccccccccccCccccccccccccccc
Confidence 3478899999999999999999999999998777776766655555554 55555554
Done!