RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy795
(109 letters)
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 92.0 bits (228), Expect = 2e-25
Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 26 GFKIGGGIDQDYKKSP--QGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT 83
GF IGGGIDQD ++P + TD GIYVT V + PA +GL++ DKI+Q NG+D TMVT
Sbjct: 41 GFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVT 100
Query: 84 HKKAVDYIKKH--PVLNLLVARKGVTST 109
H +A + K V+ LLV R+ +
Sbjct: 101 HDQARKRLTKRSEEVVRLLVTRQSLQKA 128
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 83.5 bits (207), Expect = 1e-22
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF + GG + GI+V++V + S A ++GL + DKI + NG T
Sbjct: 25 GFSVRGGSEHGL----------GIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMG 74
Query: 86 KAVDYIKKHPVLNLLVARKG 105
AV + L+++V R G
Sbjct: 75 SAVKVLTSSSRLHMMVRRMG 94
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 81.7 bits (202), Expect = 5e-22
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT 83
+ GF I GG+ +P D+GI+VT V E PASK L+ DKI+Q NGY F +
Sbjct: 22 ELGFSISGGVGGR--GNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIE 78
Query: 84 HKKAVDYIKK-HPVLNLLVARK 104
H +AV +K + L++ R+
Sbjct: 79 HGQAVSLLKTFQNTVELIIVRE 100
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 81.2 bits (201), Expect = 1e-21
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G I GG +P D GI+++ V +E PA+++G+R+ DK+L+ NG H
Sbjct: 29 GISIAGGKGS----TPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHH 84
Query: 86 KAVDYIKKHP-VLNLLVARK 104
+AV+ ++ + + V R+
Sbjct: 85 EAVEALRGAGTAVQMRVWRE 104
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 80.9 bits (200), Expect = 1e-21
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 24 KCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT 83
+ GF I GG+ +P D+GI+VT V E PASK L+ DKI+Q NGY F +
Sbjct: 14 ELGFSISGGVGGR--GNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIE 70
Query: 84 HKKAVDYIKK-HPVLNLLVARK 104
H +AV +K + L++ R+
Sbjct: 71 HGQAVSLLKTFQNTVELIIVRE 92
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 79.6 bits (197), Expect = 3e-21
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G I GG P D GI+++ V +E PA+++G+R+ DK+L+ NG H
Sbjct: 17 GISIAGGKGST----PYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHH 72
Query: 86 KAVDYIKKHP-VLNLLVARKGVTS 108
+AV+ ++ + + V R+ TS
Sbjct: 73 EAVEALRGAGTAVQMRVWRERETS 96
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 77.1 bits (190), Expect = 5e-20
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G I G Q GI+++ V S +++ GL + D+I++ NG DF+ + HK
Sbjct: 30 GCSISSGPIQKP----------GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHK 79
Query: 86 KAVDYIKKHPVLNLLV 101
+AV+ +K L + +
Sbjct: 80 EAVNVLKSSRSLTISI 95
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 76.6 bits (189), Expect = 6e-20
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF I GG + GIYV+ V S A K GLR+ D+IL+ N VTH
Sbjct: 24 GFSIRGGSEHG----------VGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHA 73
Query: 86 KAVDYIKKHPVLNLLVARKG 105
+AV +K L L V G
Sbjct: 74 EAVKALKGSKKLVLSVYSAG 93
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 77.2 bits (190), Expect = 6e-20
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 15/82 (18%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G ++ GG D GI+V V ++SPA+K GL D+IL+ N DFT + +
Sbjct: 42 GLRLAGG------------NDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIRE 89
Query: 86 KAVDYIKKHP---VLNLLVARK 104
+AV ++ P + +L +K
Sbjct: 90 EAVLFLLDLPKGEEVTILAQKK 111
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 75.5 bits (186), Expect = 2e-19
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG + + G + GI+V+++ D PA+K G L++HD+I++ NG D + TH
Sbjct: 22 GFNIIGG--RPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATH 79
Query: 85 KKAVDYIKK-HPVLNLLVARKG 105
+AV+ K + + V R+
Sbjct: 80 DQAVEAFKTAKEPIVVQVLRRT 101
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 75.5 bits (186), Expect = 2e-19
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF I GG GI++++V +S A ++GL+ D++L N DF + H
Sbjct: 30 GFNIRGGKASQL----------GIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHS 79
Query: 86 KAVDYIKKHPVLNLLVAR 103
KAV+ +K +++ V
Sbjct: 80 KAVEILKTAREISMRVRF 97
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 76.0 bits (187), Expect = 2e-19
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G I GG + GIY+T V S A SGL++ D+IL+ NG F + H
Sbjct: 35 GLTIRGGAEYGL----------GIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHD 84
Query: 86 KAVDYIKKHPVLNLLVARKG 105
+AV +K L L V G
Sbjct: 85 EAVRLLKSSRHLILTVKDVG 104
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 76.1 bits (187), Expect = 7e-19
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G + GG++ G++++ + A GL++ D+I++ NGY + TH+
Sbjct: 99 GLSVRGGLEFG----------CGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHE 148
Query: 86 KAVDYIKKHPVLNLLVARKGVT 107
+ ++ I+ +++ V G+
Sbjct: 149 EVINLIRTEKTVSIKVRHIGLI 170
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 73.5 bits (181), Expect = 1e-18
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GGID +P D GI++T++ A+ G L ++D +L+ N D + V H
Sbjct: 18 GFSIAGGID-----NPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVH 72
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
+AV+ +K+ PV+ L+V R+
Sbjct: 73 SRAVEALKEAGPVVRLVVRRR 93
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 73.6 bits (181), Expect = 1e-18
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG+ + DN IYVT++ D A K G L++ D++L N Y VTH
Sbjct: 38 GFSIAGGVG-----NQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTH 92
Query: 85 KKAVDYIKKHP-VLNLLVARKG 105
++AV +K V+ L V +
Sbjct: 93 EEAVAILKNTSEVVYLKVGKPT 114
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 72.7 bits (179), Expect = 2e-18
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG D D+GIYV+ + + A+ G L+ DKIL NG D + H
Sbjct: 21 GFNIVGGTD-----QQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 75
Query: 85 KKAVDYIKKHP-VLNLLVARK 104
+ AVD + ++L V +
Sbjct: 76 QDAVDLFRNAGYAVSLRVQHR 96
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 72.0 bits (177), Expect = 5e-18
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG+ + DN IYVT++ + A K G L++ DK+L N VTH
Sbjct: 17 GFSIAGGVG-----NQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTH 71
Query: 85 KKAVDYIKKHP-VLNLLVARKG 105
++AV +K + L VA+
Sbjct: 72 EEAVTALKNTSDFVYLKVAKPT 93
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 72.0 bits (177), Expect = 5e-18
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG +P D GI+V+ + + A ++G L++ D++L NG D T H
Sbjct: 21 GFSIAGGKGS----TPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH 76
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
AV + P + LL+ R+
Sbjct: 77 DHAVSLLTAASPTIALLLERE 97
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 72.1 bits (177), Expect = 5e-18
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG D D+GIYV+ + + A+ G L+ DKIL NG D + H
Sbjct: 31 GFNIVGGTD-----QQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 85
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
+ AVD + ++L V +
Sbjct: 86 QDAVDLFRNAGYAVSLRVQHR 106
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 71.2 bits (175), Expect = 7e-18
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GGI + DN IY+T++ + A K G L++ D++L N + V H
Sbjct: 17 GFSIAGGIG-----NQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRH 71
Query: 85 KKAVDYIKKHP-VLNLLVARKG 105
++AV +K ++ L VA+ G
Sbjct: 72 EEAVASLKNTSDMVYLKVAKPG 93
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 70.8 bits (174), Expect = 1e-17
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I G D GIYV + S A+ G + +DKIL+ + + +
Sbjct: 28 GISISGMRD-----QSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQ 82
Query: 85 KKAVDYIKKHP-VLNLLVARK 104
V+ ++ + LL+ R+
Sbjct: 83 SDVVEVLRNAGNPVRLLLIRR 103
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 71.0 bits (174), Expect = 1e-17
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G I G GIYV++V S A ++GL D++L+ NG + T +
Sbjct: 33 GISIVSG------------EKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQ 80
Query: 86 KAVDYIKK-HPVLNLLVARK 104
+A I + + +L
Sbjct: 81 QARLIIGQQCDTITILAQYN 100
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 70.5 bits (173), Expect = 2e-17
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I GG +P+ TD GI++++V A + G LR+ ++L+ N +TH
Sbjct: 24 GISIRGGARGH-AGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTH 82
Query: 85 KKAVDYIKKHP-VLNLLVARK 104
+AV ++ L +LV
Sbjct: 83 GEAVQLLRSVGDTLTVLVCDG 103
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 69.7 bits (171), Expect = 2e-17
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF + G+ + G+YV + P GL+ +D++LQ N
Sbjct: 22 GFSVADGLL-----------EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCC 70
Query: 86 KAVDYIKKHP-VLNLLVAR 103
V I + L+L+++R
Sbjct: 71 LVVPLIAESGNKLDLVISR 89
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 70.0 bits (172), Expect = 2e-17
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I G I + +GI+V + S G +++ D+I+ +G + T+
Sbjct: 18 GITIAGYIGD------KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTN 71
Query: 85 KKAVDYIKKH-PVLNLLVARKGVTS 108
++AV+ ++ + L + R+G TS
Sbjct: 72 QQAVEVLRHTGQTVLLTLMRRGETS 96
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 69.7 bits (171), Expect = 4e-17
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDN--GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT 83
GF + G + + + +V+ V A ++G+R D+IL+ NG + T
Sbjct: 20 GFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGAT 79
Query: 84 HKKAVDYIKK-HPVLNLLVARK 104
HK+ VD I+ L L V
Sbjct: 80 HKQVVDLIRAGEKELILTVLSV 101
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 69.8 bits (171), Expect = 6e-17
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G +I G + + +GIYV V S A +G ++++DKI+ +G + +
Sbjct: 30 GIRIVGYVG-----TSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFAN 84
Query: 85 KKAVDYIKKH-PVLNLLVARKGVTST 109
V+ ++ V++L + R+ +S+
Sbjct: 85 HDVVEVLRNAGQVVHLTLVRRKTSSS 110
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 68.5 bits (168), Expect = 7e-17
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF++ GG D + + ++ + D A+++ +R+ D +L +G + +TH
Sbjct: 16 GFRLQGGKDFNM----------PLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHL 65
Query: 86 KAVDYIKK-HPVLNLLVARKG 105
+A + IK LN+ + R+
Sbjct: 66 EAQNKIKGCTGSLNMTLQRES 86
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 68.6 bits (168), Expect = 1e-16
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G I GG D + +S + I +++V PA L+ +D++ NG V H
Sbjct: 22 GIAISGGRDNPHFQS----GETSIVISDVLKGGPAEG-QLQENDRVAMVNGVSMDNVEHA 76
Query: 86 KAVDYIKKH-PVLNLLVARK 104
AV ++K + + RK
Sbjct: 77 FAVQQLRKSGKNAKITIRRK 96
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 69.6 bits (170), Expect = 2e-16
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVT 83
G I G + G GI+V V + A + G ++++D +++ +G VT
Sbjct: 93 LGISIIGMGA----GADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 148
Query: 84 HKKAVDYIKKHP-VLNLLVARK 104
A ++ + ++ R+
Sbjct: 149 QSFAASVLRNTKGRVRFMIGRE 170
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 68.3 bits (167), Expect = 2e-16
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I GG + G GI++ +V ++SPA K+ L+ DKIL+ +G D +H
Sbjct: 30 GISIVGGQTVIKRL-KNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASH 88
Query: 85 KKAVDYIKK-HPVLNLLVARK 104
+AV+ IK + +V
Sbjct: 89 SEAVEAIKNAGNPVVFIVQSL 109
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 67.8 bits (166), Expect = 2e-16
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G + D+ + GIYV V + A G + D++L NG TH
Sbjct: 23 GISVTVLFDKGGVNTSVR--HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATH 80
Query: 85 KKAVDYIKKH-PVLNLLVAR 103
K+AV+ ++ V++LL+ +
Sbjct: 81 KQAVETLRNTGQVVHLLLEK 100
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 66.9 bits (164), Expect = 2e-16
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF++ GG D + + ++ + A+++G+ + D +L +G + +TH
Sbjct: 16 GFRLQGGKDFNV----------PLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHI 65
Query: 86 KAVDYIKK-HPVLNLLVAR 103
+A + I+ L+L ++R
Sbjct: 66 EAQNKIRACGERLSLGLSR 84
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 66.9 bits (164), Expect = 2e-16
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF+I GG D I VT+V + A + LR D I+ NG + H
Sbjct: 15 GFRITGGRDFHT----------PIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHA 64
Query: 86 KAVDYIKK-HPVLNLLVAR 103
+A I++ L L + R
Sbjct: 65 EAQSKIRQSPSPLRLQLDR 83
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 67.0 bits (164), Expect = 3e-16
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I GG + G GI++ V ++SPA K+G L+ D+I++ +G D +H
Sbjct: 19 GISIVGGRGMGSR-LSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASH 77
Query: 85 KKAVDYIKKHP-VLNLLVARK 104
++AV+ I+K + +V
Sbjct: 78 EQAVEAIRKAGNPVVFMVQSI 98
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 66.7 bits (163), Expect = 4e-16
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 16/83 (19%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF I I GI+V V SPA S L++ D+I+ N F+ K
Sbjct: 20 GFTIKWDIP-------------GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSK 66
Query: 86 KAVDYIKKH---PVLNLLVARKG 105
+ + + K L + V R G
Sbjct: 67 EWEEAMAKAQETGHLVMDVRRYG 89
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 67.0 bits (164), Expect = 4e-16
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I G + G GI+V V + A + G ++++D+I++ +G VT
Sbjct: 23 GISIIGMGV----GADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 78
Query: 85 KKAVDYIKKH-PVLNLLVARKGVTS 108
A ++ + ++ R+ +
Sbjct: 79 NFAATVLRNTKGNVRFVIGREKPSG 103
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 66.6 bits (163), Expect = 6e-16
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I G + G GI+V V + A + G ++++D +++ +G VT
Sbjct: 18 GISIIGMGA----GADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ 73
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
A ++ + ++ R+
Sbjct: 74 SFAASVLRNTKGRVRFMIGRE 94
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 66.1 bits (162), Expect = 6e-16
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF++ GG D + ++ V+ S A+ + L D I NG ++TH
Sbjct: 21 GFRLVGGRDFSA----------PLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHL 70
Query: 86 KAVDYIKK-HPVLNLLVARKG 105
+A + IK H L L V+
Sbjct: 71 EAQNRIKGCHDHLTLSVSSGP 91
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 66.1 bits (162), Expect = 8e-16
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G + GG++ GIYV V + A G + D++L NG TH
Sbjct: 19 GISVTGGVNT-------SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATH 71
Query: 85 KKAVDYIKKH-PVLNLLVAR 103
K+AV+ ++ V++LL+ +
Sbjct: 72 KQAVETLRNTGQVVHLLLEK 91
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 65.7 bits (161), Expect = 8e-16
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG D K + +T V PA + G ++ D++L +G TH
Sbjct: 17 GFVIRGGAHDDRNK------SRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTH 70
Query: 85 KKAVDYIKKHP-VLNLLVAR 103
+A+ +K+ LL+
Sbjct: 71 AEAMSILKQCGQEAALLIEY 90
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 66.3 bits (162), Expect = 1e-15
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I GG + G GI++ V ++SPA K+G L+ D+I++ +G D +H
Sbjct: 39 GISIVGGRGMGSR-LSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASH 97
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
++AV+ I+K + +V
Sbjct: 98 EQAVEAIRKAGNPVVFMVQSI 118
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 65.5 bits (160), Expect = 1e-15
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF++ GGID + + +T + S A+ + L D IL +G+ +TH
Sbjct: 18 GFRLSGGIDFNQ----------PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 67
Query: 86 KAVDYIKK-HPVLNLLVARKGVTS 108
A D IK L L + R
Sbjct: 68 DAQDRIKAASYQLCLKIDRAETRL 91
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 65.9 bits (161), Expect = 1e-15
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G + GG D + ++ + I +++V PA L+ +D+++ NG V H
Sbjct: 29 GIAVSGGRDNPHFEN----GETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHS 83
Query: 86 KAVDYIKKH-PVLNLLVARK 104
AV ++K + ++V R
Sbjct: 84 FAVQQLRKSGKIAAIVVKRP 103
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 67.9 bits (166), Expect = 1e-15
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG D +P D I++T++ A++ G LR++D IL N D VTH
Sbjct: 19 GFSIAGGTD-----NPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 73
Query: 85 KKAVDYIKKH-PVLNLLVAR 103
AV+ +K+ ++ L V R
Sbjct: 74 SAAVEALKEAGSIVRLYVMR 93
Score = 62.8 bits (153), Expect = 1e-13
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG+ + DN IYVT++ + A K G L++ DKIL N V H
Sbjct: 114 GFSIAGGVG-----NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH 168
Query: 85 KKAVDYIKK-HPVLNLLVARKGVTST 109
+ AV +K + V+ L VA+ T
Sbjct: 169 EDAVAALKNTYDVVYLKVAKPSNAET 194
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 65.0 bits (159), Expect = 1e-15
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF+I GG D I VT+V + A + LR D I+ NG + H
Sbjct: 19 GFRISGGRDFHT----------PIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHA 68
Query: 86 KAVDYIKK-HPVLNLLVARKGVTS 108
+A I++ L L + R S
Sbjct: 69 EAQSKIRQSASPLRLQLDRSSGPS 92
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 65.0 bits (159), Expect = 2e-15
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF++ GG D + + ++ + S A++S L D ++ +G + +TH
Sbjct: 14 GFRLQGGKDFNM----------PLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHL 63
Query: 86 KAVDYIKK-HPVLNLLVARKG 105
+A + IK L+L + +
Sbjct: 64 EAQNKIKSASYNLSLTLQKSK 84
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 65.6 bits (160), Expect = 2e-15
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G +I GG + P + G Y+ ++ A ++G L ++L+ NG T T+
Sbjct: 33 GIRIVGGKE-----IPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTY 87
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
++ I + + V
Sbjct: 88 EEVQSIISQQSGEAEICVRLD 108
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 65.1 bits (159), Expect = 2e-15
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF++ GG D + + ++ + D AS++ +R+ D +L +G +TH
Sbjct: 18 GFRLQGGKDFNM----------PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHL 67
Query: 86 KAVDYIKK-HPVLNLLVARKG 105
+A + IK LN+ + R
Sbjct: 68 EAQNKIKACTGSLNMTLQRAS 88
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 64.7 bits (158), Expect = 2e-15
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF++ GG D + + ++ V S A+ + L + D I +G + + +TH
Sbjct: 16 GFRLVGGKDFEQ----------PLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHL 65
Query: 86 KAVDYIKK-HPVLNLLVAR 103
+A + IK L L VAR
Sbjct: 66 EAQNRIKGCTDNLTLTVAR 84
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 64.6 bits (158), Expect = 2e-15
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I GG D I + EVY+E A K G L D+IL+ NG D TH
Sbjct: 18 GLSIVGGSDTLLG---------AIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATH 68
Query: 85 KKAVDYIKKHP-VLNLLVAR 103
+A++ +++ P + L + R
Sbjct: 69 DEAINVLRQTPQRVRLTLYR 88
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 65.6 bits (160), Expect = 3e-15
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF + GG S G D + + ++ + + +S ++ D+ILQ G +T
Sbjct: 43 GFSLEGGKG-----SLHG--DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTR 95
Query: 85 KKAVDYIKKHP--VLNLLVARKGVTS 108
+A + IK P + +++ RK + S
Sbjct: 96 FEAWNIIKALPDGPVTIVIRRKSLQS 121
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 64.7 bits (158), Expect = 3e-15
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G + G+ G+Y+ + SPA+ G L + D+IL+ NG + +
Sbjct: 22 GMGLIDGMHT-------HLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGY 74
Query: 85 KKAVDYIKKH-PVLNLLVARKGVTS 108
+AVD I+ + LVA+ V +
Sbjct: 75 LRAVDLIRHGGKKMRFLVAKSDVET 99
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 65.1 bits (159), Expect = 3e-15
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I + G IYV + A + G L+ D++++ NG D +
Sbjct: 44 GFSITSRDV-----TIGG--SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQ 96
Query: 85 KKAVDYIKKHP---VLNLLVARK 104
++ V ++ ++LLV R+
Sbjct: 97 EEVVSLLRSTKMEGTVSLLVFRQ 119
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 65.1 bits (159), Expect = 3e-15
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG SP G D IYV V+ + AS+ G L+ D+I+ NG VTH
Sbjct: 39 GFSIVGGYG-----SPHG--DLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTH 91
Query: 85 KKAVDYIKK-HPVLNLLVARKGVTS 108
++AV +K+ + L+V TS
Sbjct: 92 EEAVAILKRTKGTVTLMVLSSDETS 116
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 64.3 bits (157), Expect = 4e-15
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I G GIYV V A G L D++L +G ++
Sbjct: 24 GLSIVAAKGA-------GQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQ 76
Query: 85 KKAVDYIKKH-PVLNLLVARKG 105
++A + + + V+ L VA++G
Sbjct: 77 ERAAELMTRTSSVVTLEVAKQG 98
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 64.7 bits (158), Expect = 4e-15
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I GG D N I + EVY+E A++ G L D+IL+ NG D +H
Sbjct: 31 GLSIVGGKD---------TPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSH 81
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
++A+ +++ + L+V R
Sbjct: 82 EEAITALRQTPQKVRLVVYRD 102
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 63.9 bits (156), Expect = 5e-15
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I G +D GI++ + +SPA G L++ D+IL NG D T
Sbjct: 20 GICIVRGEVKD----SPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTE 75
Query: 85 KKAVDYIKKHP-VLNLLVAR 103
+ +D IK+ + L +
Sbjct: 76 QAVIDLIKEADFKIELEIQT 95
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 63.9 bits (156), Expect = 6e-15
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG + +YV + ++ PA ++G +R+ D+I++ NG +TH
Sbjct: 25 GFSIRGGRE----------YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTH 74
Query: 85 KKAVDYIKKHP-VLNLLVAR 103
+A++ IK + LL+ R
Sbjct: 75 ARAIELIKSGGRRVRLLLKR 94
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 63.9 bits (156), Expect = 8e-15
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF + GG + + +YV + ++ PA +SG +R+ D+IL+ NG + H
Sbjct: 38 GFSLRGGRE----------YNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKH 87
Query: 85 KKAVDYIKKHP-VLNLLVARK 104
+A++ IK + L + R
Sbjct: 88 SRAIELIKNGGRRVRLFLKRG 108
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 63.1 bits (154), Expect = 9e-15
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G K+ D + G+++ ++ + A++ G L +D++L NG+D T
Sbjct: 19 GIKLVRRTD-----------EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTP 67
Query: 85 KKAVDYIKK-HPVLNLLVAR 103
+ A I+ +NL +AR
Sbjct: 68 ELAAQIIQASGERVNLTIAR 87
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 63.5 bits (155), Expect = 9e-15
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I + G IYV + A + G L+ D++++ NG D +
Sbjct: 25 GFSITSRDV-----TIGG--SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQ 77
Query: 85 KKAVDYIKK---HPVLNLLVARK 104
++ V ++ ++LLV R+
Sbjct: 78 EEVVSLLRSTKMEGTVSLLVFRQ 100
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 62.7 bits (153), Expect = 1e-14
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I GG + I +++++ A ++ L + D IL NG D + TH
Sbjct: 19 GISIKGGRENKM----------PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH 68
Query: 85 KKAVDYIKK-HPVLNLLVAR 103
+AV +KK + L V
Sbjct: 69 DEAVQALKKTGKEVVLEVKY 88
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 65.3 bits (158), Expect = 1e-14
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF I GG+ + +P D+GI+VT V E PASK L+ DKI+Q NGY F + H
Sbjct: 5 GFSISGGVGG--RGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHG 61
Query: 86 KAVDYIKKHPVLNLLVARKGVTST 109
+AV +K L+ + V +
Sbjct: 62 QAVSLLKTFQNTVELIIVREVGNG 85
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 63.3 bits (154), Expect = 2e-14
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G K+ GG K + G ++T+V S A G LR D++L+ NG T
Sbjct: 51 GLKVVGG-----KMTESG--RLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATF 103
Query: 85 KKAVDYIKK---HPVLNLLVARKGVTS 108
++ + I + P + L+V+R G +S
Sbjct: 104 EEVYNIILESKPEPQVELVVSRSGPSS 130
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 62.7 bits (153), Expect = 2e-14
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G +GGG D D + V + + PA + G L + D +L NG +TH
Sbjct: 25 GLTLGGGRD--------VAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTH 76
Query: 85 KKAVDYIKK-HPVLNLLVAR 103
+AV+ I+ P L+L++ R
Sbjct: 77 AQAVERIRAGGPQLHLVIRR 96
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 62.3 bits (152), Expect = 2e-14
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG +Q+ + IY++ V A + G L+ D++L NG H
Sbjct: 19 GFNIMGGKEQN----------SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQH 68
Query: 85 KKAVDYIKK-HPVLNLLVARK 104
+KAV+ +K + L+V
Sbjct: 69 EKAVELLKAAQGSVKLVVRSG 89
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 62.9 bits (153), Expect = 3e-14
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G + G G TD GI++ + A K G LRM+D+++ NG ++
Sbjct: 40 GVSLKGNKS-----RETG-TDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSN 93
Query: 85 KKAVDYIKK--------HPVLNLLVARKGVTST 109
+A++ +++ ++ L++ R+ S+
Sbjct: 94 HEAMETLRRSMSMEGNIRGMIQLVILRRSGPSS 126
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 62.4 bits (152), Expect = 3e-14
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG D GI+++ + PA SG LR D+IL NG D +H
Sbjct: 28 GFNIVGGED-----------GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH 76
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
++A +K + ++ K
Sbjct: 77 EQAAIALKNAGQTVTIIAQYK 97
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 62.1 bits (151), Expect = 4e-14
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 20/109 (18%)
Query: 8 GTAMECLSPPDGRRVLKC--------GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESP 59
G++ L DG V GF + GG D + I V V+
Sbjct: 4 GSSGATLKQLDGIHVTILHKEEGAGLGFSLAGGAD---------LENKVITVHRVFPNGL 54
Query: 60 ASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIK--KHPVLNLLVARKG 105
AS+ G ++ +++L NG TH A+ ++ + P ++V RK
Sbjct: 55 ASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL 103
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 61.1 bits (149), Expect = 5e-14
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 38 KKSPQGY--------TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
+K PQGY + G Y+ V SPA++SGLR D++++ NG + + H + V
Sbjct: 11 RKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVA 70
Query: 90 YIKKHP-VLNLLVARK 104
IK LLV
Sbjct: 71 SIKAREDEARLLVVGP 86
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 62.0 bits (151), Expect = 5e-14
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTM-VT 83
GF + G + + GI+V E+ + S A + G L+ D+IL NG +T
Sbjct: 35 GFSVVGLRSE-------NRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTIT 87
Query: 84 HKKAVDYIKK-HPVLNLLVAR 103
H++A+ ++K + L++AR
Sbjct: 88 HQQAISILQKAKDTVQLVIAR 108
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 61.6 bits (150), Expect = 5e-14
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG D GI+V+ + PA SG LR D+IL NG + TH
Sbjct: 29 GFNIVGGED-----------GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATH 77
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
++A +K+ + ++ +
Sbjct: 78 EQAAAALKRAGQSVTIVAQYR 98
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 61.7 bits (150), Expect = 6e-14
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
+ GG+D SP G + V+ VY+ A + G + D+I+ NG T T
Sbjct: 31 DLALEGGVD-----SPVG----KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTL 81
Query: 85 KKAVDYIKKHP-----VLNLLVARK 104
+A ++K ++L+VA
Sbjct: 82 AEAEAALQKAWNQGGDWIDLVVAVC 106
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 62.1 bits (151), Expect = 6e-14
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G + G D+ + I+V + E PA+ G +R+ D++L+ N +H
Sbjct: 39 GLSLAGNKDR---------SRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSH 89
Query: 85 KKAVDYIKKHP-VLNLLVARK 104
+ A IK P + L+ R
Sbjct: 90 QNASAIIKTAPSKVKLVFIRN 110
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 61.3 bits (149), Expect = 9e-14
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTM-VT 83
GF + G I+V +V S A + L+ +D+IL N ++
Sbjct: 40 GFSVVALRS-----QNLG--KVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNIS 92
Query: 84 HKKAVDYIKKHP-VLNLLVAR 103
H++A+ +++ L L+VAR
Sbjct: 93 HQQAIALLQQTTGSLRLIVAR 113
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 61.2 bits (149), Expect = 1e-13
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I GG+ SP G D I++ ++ A+++ LR+ D+I+ G +TH
Sbjct: 39 GISIAGGVG-----SPLG--DVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTH 91
Query: 85 KKAVDYIKKHP-VLNLLVARKGVTS 108
+AV+ +K + + V G S
Sbjct: 92 TQAVNLLKNASGSIEMQVVAGGDVS 116
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 60.8 bits (148), Expect = 1e-13
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG +G+ V + A + G L+ D IL+ G + +T
Sbjct: 29 GFGIVGG------------KTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTS 76
Query: 85 KKAVDYIKK-HPVLNLLVARK 104
++ ++ + +LVAR
Sbjct: 77 EQVAQVLRNCGNSVRMLVARD 97
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 60.4 bits (147), Expect = 1e-13
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 38 KKSPQGY-----TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
+K G+ D + V V A K+G++ D+I++ NG T +H + V IK
Sbjct: 15 QKDQHGFGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK 74
Query: 93 KHPVLNLLVARKG 105
+ L +
Sbjct: 75 SGAYVALTLLGSS 87
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 61.0 bits (148), Expect = 1e-13
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I G GI+++ + A +G L ++D++L+ NG + + +
Sbjct: 45 GFYIRDGSSVRVTPHGLEK-VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSL 103
Query: 85 KKAVDYIKK 93
+ D +
Sbjct: 104 DQVTDMMIA 112
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 60.1 bits (146), Expect = 2e-13
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I GG + I ++E++ PA + G L + D IL NG + H
Sbjct: 24 GISITGGKEHGV----------PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKH 73
Query: 85 KKAVDYIKKH-PVLNLLVARKG 105
K+AV + + + V
Sbjct: 74 KEAVTILSQQRGEIEFEVVYVA 95
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 60.1 bits (146), Expect = 2e-13
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I D P T + I + + + A +SG L D+++ N Y +
Sbjct: 29 GFSILDYQD------PLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSL 82
Query: 85 KKAVDYIKKHP--VLNLLVAR 103
+AV+ +K P +++L +
Sbjct: 83 AEAVEILKAVPPGLVHLGICS 103
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 60.7 bits (147), Expect = 2e-13
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 38 KKSPQGY--------TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
KK P GY + G ++ V +SPA SGLR D+I++ NG H V
Sbjct: 16 KKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVS 75
Query: 90 YIKKHP-VLNLLVARK 104
I+ LLV +
Sbjct: 76 AIRAGGDETKLLVVDR 91
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 59.6 bits (145), Expect = 3e-13
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG GI+++ + PA SG LR D+IL NG D +H
Sbjct: 25 GFNIVGGEX-----------GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH 73
Query: 85 KKAVDYIKKH-PVLNLLVARK 104
++A +K + ++ K
Sbjct: 74 EQAAIALKNAGQTVTIIAQYK 94
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 60.3 bits (146), Expect = 3e-13
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G + D + D GIY++E+ S A+K G +R D+I+Q NG +
Sbjct: 35 GLTVCYRTDDED--------DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREE 86
Query: 85 KKAVDYIKKHPVLNLLVAR 103
A+ +++ +LL+AR
Sbjct: 87 AVALLTSEENKNFSLLIAR 105
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 60.1 bits (146), Expect = 3e-13
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G + GG D IYV V S+ G ++ D +L +G + T V+
Sbjct: 39 GMTVAGGASHREW-------DLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSR 91
Query: 85 KKAVDYIKKHP-VLNLLVAR 103
+AV +K+ + L
Sbjct: 92 SEAVALLKRTSSSIVLKALE 111
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 62.1 bits (150), Expect = 3e-13
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 38 KKSPQGY--------TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
KK P GY + G ++ V +SPA SGLR D+I++ NG H V
Sbjct: 16 KKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVS 75
Query: 90 YIKKHP-VLNLLVARK 104
I+ LLV +
Sbjct: 76 AIRAGGDETKLLVVDR 91
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 58.8 bits (143), Expect = 4e-13
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 38 KKSPQGY-----TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
+ GY ++ V SPA GLR D+IL N + +H+ V I
Sbjct: 9 ARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIG 68
Query: 93 K-HPVLNLLVAR 103
K VL++++A
Sbjct: 69 KCSGVLHMVIAE 80
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 58.8 bits (143), Expect = 4e-13
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 38 KKSPQGY--------TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
+K P GY G Y+ V SPA K+GL D++++ NG + TH++ V
Sbjct: 10 EKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVS 69
Query: 90 YIKKHP-VLNLLVARK 104
I+ + LLV
Sbjct: 70 RIRAALNAVRLLVVDP 85
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 58.9 bits (143), Expect = 5e-13
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF+I GG + I + V A + G L D+++ +G TH
Sbjct: 23 GFRILGGDEPG----------QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72
Query: 85 KKAVDYIKKHP---VLNLLVARK 104
+ +D + +NL V RK
Sbjct: 73 RYVIDLMHHAARNGQVNLTVRRK 95
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 59.0 bits (143), Expect = 5e-13
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 38 KKSPQGY--------TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
K Y G+Y+T++ + A ++G+ D +++ NG + +H++ V+
Sbjct: 15 VKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVE 74
Query: 90 YIKKHP-VLNLLVARK 104
+KK + L+ K
Sbjct: 75 KVKKSGSRVMFLLVDK 90
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 58.2 bits (141), Expect = 8e-13
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF+I + + +V V++ SPA +GL D I NG + + H+
Sbjct: 19 GFEIQTYGLHH---REEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHR 75
Query: 86 KAVDYIKKHP-VLNLLVAR 103
+ VD IK VL L
Sbjct: 76 EIVDIIKASGNVLRLETLY 94
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 59.2 bits (143), Expect = 8e-13
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDN--GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT 83
GF + G Q + Y+ V + A ++GLRM D +++ NG + V
Sbjct: 42 GFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVG 101
Query: 84 HKKAVDYIKK-HPVLNLLVAR 103
H++ V+ I++ L + V
Sbjct: 102 HRQVVNMIRQGGNTLMVKVVM 122
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 58.6 bits (142), Expect = 8e-13
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G KI GGI+++ +Y+ EV K G L+ D+++ N V+
Sbjct: 28 GLKILGGINRNE--------GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSF 79
Query: 85 KKAVDYIKK-----HPVLNLLVARKG 105
++A I + + R G
Sbjct: 80 EEAKSIITRAKLRSESPWEIAFIRSG 105
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 58.0 bits (141), Expect = 9e-13
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF+I GG + IY+ + A G LR D+++ +G +H
Sbjct: 16 GFRILGGNE----------PGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSH 65
Query: 85 KKAVDYIKKHP---VLNLLVARK 104
+ V +++ +NL V +
Sbjct: 66 QLVVQLMQQAAKQGHVNLTVRQT 88
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 58.1 bits (141), Expect = 9e-13
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF + K G G ++ EV PA K+G++ D+++ G + H+
Sbjct: 17 GFLLREE------KGLDG--RPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHE 68
Query: 86 KAVDYIKKHP-VLNLLVARK 104
+ V I+ ++L V
Sbjct: 69 ETVSRIQGQGSCVSLTVVDP 88
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 58.6 bits (142), Expect = 1e-12
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 14/82 (17%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG + D + V V + PA++ G + D I+ N TH
Sbjct: 33 GFTIIGGDE----------PDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTH 82
Query: 85 KKAVDYIKKHP---VLNLLVAR 103
V + P +NL++ R
Sbjct: 83 ADVVKLFQSVPIGQSVNLVLCR 104
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 57.7 bits (140), Expect = 1e-12
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 38 KKSPQGY--------TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
KK P GY + G ++ V +SPA SGLR D+I++ NG H V
Sbjct: 16 KKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVS 75
Query: 90 YIKKHP-VLNLLVARK 104
I+ LLV +
Sbjct: 76 AIRAGGDETKLLVVDR 91
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 59.7 bits (145), Expect = 2e-12
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG D K + +T V PA + G ++ D++L +G TH
Sbjct: 120 GFVIRGGAHDDRNK------SRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTH 173
Query: 85 KKAVDYIKK-HPVLNLLVAR 103
+A+ +K+ LL+
Sbjct: 174 AEAMSILKQCGQEATLLIEY 193
Score = 57.1 bits (138), Expect = 2e-11
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G + GGID+D V+ + A++S L + D I NG + H
Sbjct: 22 GLTVSGGIDKD----------GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRH 71
Query: 85 KKAVDYIKKHP-VLNLLVARK 104
+ + +K + L V +
Sbjct: 72 DEIISLLKNVGERVVLEVEYE 92
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 57.4 bits (139), Expect = 2e-12
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 48 GIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLLVARKG 105
I+V E+ +S A++ G ++ D +L+ NG ++ A I++ L ++V R
Sbjct: 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE 83
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 57.5 bits (139), Expect = 2e-12
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I GG + I ++E++ PA + G L + D IL NG + H
Sbjct: 42 GISITGGKEHG----------VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKH 91
Query: 85 KKAVDYIKKH-PVLNLLV 101
K+AV + + + V
Sbjct: 92 KEAVTILSQQRGEIEFEV 109
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 57.4 bits (139), Expect = 2e-12
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I G ++ D GIY+ + + G + D +LQ N +F +++
Sbjct: 20 GISIVGQSNER--------GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSN 71
Query: 85 KKAVDYIK----KHPVLNLLVARKG 105
AV ++ K + L VA+ G
Sbjct: 72 DDAVRVLRDIVHKPGPIVLTVAKSG 96
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 57.1 bits (138), Expect = 2e-12
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF+I Q+ ++ + ++ ++SPA +GL+ D + NG T+K
Sbjct: 30 GFEIQSYRPQNQNACS---SEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYK 86
Query: 86 KAVDYIKK-HPVLNLLV 101
+ VD I+ +L +
Sbjct: 87 QVVDLIRSSGNLLTIET 103
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 57.0 bits (138), Expect = 3e-12
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 38 KKSPQGY-----TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
++ G+ D+ + V V PA ++GL+ D +LQ N + I+
Sbjct: 22 RRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIR 81
Query: 93 KHP-VLNLLVARKGVTST 109
P + LLV R S+
Sbjct: 82 SCPSEIILLVWRVSGPSS 99
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 57.4 bits (139), Expect = 3e-12
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I +++ S + + D SPA + L++ D+IL NG + H
Sbjct: 25 GFVIISSLNRPESGST---ITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPH 81
Query: 85 KKAVDYIKKHP-VLNLLVARKGVTST 109
V IK + L + + ++
Sbjct: 82 ADIVKLIKDAGLSVTLRIIPQEELNS 107
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 57.0 bits (138), Expect = 3e-12
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF + GG++ + V+++ D A+ S +R D+++ NG +
Sbjct: 24 GFTLKGGLEHCE----------PLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SR 72
Query: 85 KKAVDYIKK-HPVLNLLVARKG 105
++A+ IK +L L+V R+
Sbjct: 73 QEALILIKGSFRILKLIVRRRN 94
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 56.6 bits (137), Expect = 3e-12
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 38 KKSPQGY--------TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
KK GY G + ++ SPA +GL+ +D ++ NG + H V+
Sbjct: 13 KKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVE 72
Query: 90 YIKKHP-VLNLLVARKGVTS 108
I+K LLV K S
Sbjct: 73 MIRKGGDQTTLLVLDKEAES 92
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 57.5 bits (139), Expect = 4e-12
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF + GG + D + + + + PA+ G + D I+ N TH
Sbjct: 32 GFTVVGGDE----------PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 81
Query: 85 KKAVDYIKKHP---VLNLLVAR 103
+ V + P ++L + R
Sbjct: 82 AQVVKIFQSIPIGASVDLELCR 103
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 59.8 bits (144), Expect = 4e-12
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G ++ GG D GI+V V ++SPA+K GL D+IL+ N DFT + +
Sbjct: 22 GLRLAGG------------NDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIRE 69
Query: 86 KAVDYIKKHPVLNLL 100
+AV ++ P +
Sbjct: 70 EAVLFLLDLPKGEEV 84
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 56.8 bits (137), Expect = 4e-12
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 26 GFKIGGGIDQDYKK--SPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVT 83
GF + G Q + +P Y+ V + A ++GLRM D +++ NG + V
Sbjct: 22 GFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVG 81
Query: 84 HKKAVDYIKKHP-VLNLLVAR 103
H++ V+ I++ L + V
Sbjct: 82 HRQVVNMIRQGGNTLMVKVVM 102
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 56.1 bits (136), Expect = 5e-12
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF + GG + D + + + + PA+ G + D I+ N TH
Sbjct: 14 GFTVVGGDE----------PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63
Query: 85 KKAVDYIKKHP---VLNLLVAR 103
+ V + P ++L + R
Sbjct: 64 AQVVKIFQSIPIGASVDLELCR 85
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 59.9 bits (144), Expect = 5e-12
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG D +P D I++T++ A++ G LR++D IL N D VTH
Sbjct: 73 GFSIAGGTD-----NPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 127
Query: 85 KKAVDYIKKHP-VLNLLVARK 104
AV+ +K+ ++ L V R+
Sbjct: 128 SAAVEALKEAGSIVRLYVMRR 148
Score = 51.4 bits (122), Expect = 4e-09
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF I GG D + GI+++ + PA SG LR D+IL NG D +H
Sbjct: 321 GFNIVGGEDGE-----------GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH 369
Query: 85 KKAVDYIKK-HPVLNLLVARK 104
++A +K + ++ K
Sbjct: 370 EQAAIALKNAGQTVTIIAQYK 390
Score = 39.5 bits (91), Expect = 7e-05
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 11 MECLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHD 69
+++K +G I + DN IYVT++ + A K G L++ D
Sbjct: 149 KPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGD 207
Query: 70 KILQCNGYDFTMVTHKKAVDYIKK 93
KIL N V H+ AV +K
Sbjct: 208 KILAVNSVGLEDVMHEDAVAALKN 231
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 56.1 bits (136), Expect = 5e-12
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 38 KKSPQGY--------TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
K GY G ++ EV PA +GL D I++ NG + ++K VD
Sbjct: 10 AKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVD 69
Query: 90 YIKKHP-VLNLLVARK 104
I+ + LLV K
Sbjct: 70 RIQSSGKNVTLLVCGK 85
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 56.4 bits (136), Expect = 5e-12
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 17/83 (20%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKS--GLRMHDKILQCNGYDFTMVT 83
GF + GG DQ + V+ V +PA L D+++ NG D T
Sbjct: 32 GFNVKGGYDQKM----------PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 81
Query: 84 HKKAVDYIKKHP-----VLNLLV 101
H + V +IK L LLV
Sbjct: 82 HDQVVLFIKASCERHSGELMLLV 104
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 56.1 bits (136), Expect = 5e-12
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 38 KKSPQGY--------TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
KK GY G + ++ SPA +GL+ +D ++ NG + H V+
Sbjct: 12 KKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVE 71
Query: 90 YIKKHP-VLNLLVARK 104
I+K LLV K
Sbjct: 72 MIRKGGDQTTLLVLDK 87
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 56.8 bits (137), Expect = 5e-12
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 17/90 (18%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKS--GLRMHDKILQCNGYDFTMVT 83
GF + GG DQ + V+ V +PA L D+++ NG D T
Sbjct: 30 GFNVKGGYDQKM----------PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 79
Query: 84 HKKAVDYIKK-----HPVLNLLVARKGVTS 108
H + V +IK L LLV V
Sbjct: 80 HDQVVLFIKASCERHSGELMLLVRPNAVYD 109
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 56.3 bits (136), Expect = 6e-12
Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF + V V D SPA ++GLR D I NG + H
Sbjct: 16 GFSLRAIRVYM---GDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHM 72
Query: 86 KAVDYIKKHP-VLNLLVARKGVTST 109
V+ + K ++L T T
Sbjct: 73 DVVELLLKSGNKISLRTTALENTET 97
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 55.7 bits (135), Expect = 6e-12
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I G + D G++V+++ A G L D+IL NG D T
Sbjct: 19 GLSIVGKRN-----------DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQ 67
Query: 85 KKAVDYIKK-HPVLNLLVAR 103
+ +K + L V R
Sbjct: 68 EAVAALLKCSLGTVTLEVGR 87
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 57.9 bits (140), Expect = 8e-12
Identities = 12/80 (15%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I + + + ++++ S A ++G L + DK+L + +
Sbjct: 122 GITISSPSSRKP--------GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSM 173
Query: 85 KKAVDYIKK-HPVLNLLVAR 103
+ AV +++ ++ L + +
Sbjct: 174 EDAVQILQQCEDLVKLKIRK 193
Score = 57.1 bits (138), Expect = 1e-11
Identities = 12/77 (15%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G ++ G + + ++ + +SPA + G L++ D+++ NG T
Sbjct: 21 GIQLQGSVFATE------TLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTF 74
Query: 85 KKAVDYIKKHPVLNLLV 101
++A ++ + + +
Sbjct: 75 EEANQLLRDSSITSKVT 91
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 56.5 bits (136), Expect = 9e-12
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 15 SPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQC 74
PP+ + G + + + I+V +V + PA ++GL D+I++
Sbjct: 31 YPPESAIQFSYKDEENGNRGGKQRNRLEP--MDTIFVKQVKEGGPAFEAGLCTGDRIIKV 88
Query: 75 NGYDFTMVTHKKAVDYIKKHP-VLNLLVARK 104
NG T+ + + I+ L L V K
Sbjct: 89 NGESVIGKTYSQVIALIQNSDTTLELSVMPK 119
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 57.1 bits (138), Expect = 9e-12
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
G ++ DNGI+V V SPAS GLR D++LQ NG + +
Sbjct: 19 GLRLKSI-------------DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD 65
Query: 86 KAVDYIKKHP--VLNLLVARKG 105
KA +K+ + + + +
Sbjct: 66 KAHKVLKQAFGEKITMTIRDRP 87
Score = 38.3 bits (89), Expect = 1e-04
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK-HPVLNLLV 101
G+ +T + +S A+++GL I + NG + + + D + V+ + +
Sbjct: 103 GFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 55.4 bits (134), Expect = 1e-11
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 38 KKSPQGY-----TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
+ G+ D+ + V V PA ++GL+ D +LQ N + I+
Sbjct: 10 PRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIR 69
Query: 93 KHP-VLNLLVAR 103
P + LLV R
Sbjct: 70 SCPSEIILLVWR 81
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 55.0 bits (133), Expect = 1e-11
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 48 GIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLLVAR 103
I+V E+ +S A++ G ++ D +L+ NG ++ A I++ L ++V R
Sbjct: 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR 79
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 55.9 bits (135), Expect = 1e-11
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G IGGG +Y+ +V+D +PA+ G + D+I NG T
Sbjct: 34 GISIGGGAQYC----------PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK 83
Query: 85 KKAVDYIKKH-PVLNLLVAR 103
+ I++ + + +
Sbjct: 84 VEVAKMIQEVKGEVTIHYNK 103
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 55.0 bits (133), Expect = 1e-11
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I G + + I ++ + A ++G + + D+IL N
Sbjct: 19 GITISGTEEPF----------DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPL 68
Query: 85 KKAVDYIKK-HPVLNLLVARK 104
+A+ ++ + L + ++
Sbjct: 69 SEAIHLLQMAGETVTLKIKKQ 89
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 55.5 bits (134), Expect = 2e-11
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G IGGG +Y+ +V+D +PA+ G + D+I NG T
Sbjct: 39 GISIGGGAQYC----------PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK 88
Query: 85 KKAVDYIKKHP-VLNLLVAR 103
+ I++ + + +
Sbjct: 89 VEVAKMIQEVKGEVTIHYNK 108
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 55.2 bits (133), Expect = 2e-11
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 37 YKKSPQGY--------TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAV 88
K+ Q Y +G + + + SPA K+GL D++L+ NG H + V
Sbjct: 20 SKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVV 79
Query: 89 DYIKK-HPVLNLLVARK 104
+ ++K + LLV
Sbjct: 80 ELVRKSGNSVTLLVLDG 96
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 54.6 bits (132), Expect = 2e-11
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 38 KKSPQGY--------TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVD 89
K P G+ G V ++ D GL+ D I++ N + +TH + VD
Sbjct: 10 VKGPMGFGFTIADSPGGGGQRVKQIVD--SPRSRGLKEGDLIVEVNKKNVQALTHNQVVD 67
Query: 90 YIKKHPV---LNLLVARKG 105
+ + P + LLV R+
Sbjct: 68 MLVESPKGSEVTLLVQRQT 86
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 55.2 bits (133), Expect = 2e-11
Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G ++ G + S + ++ + +SPA + G L++ D+++ NG T
Sbjct: 30 GIQLQGSVFATETLS------SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTF 83
Query: 85 KKAVDYIKKHPVLNLLV 101
++A ++ + + +
Sbjct: 84 EEANQLLRDSSITSKVT 100
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 54.2 bits (131), Expect = 2e-11
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 48 GIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLLVAR 103
I+V E+ A+K G L D IL+ NG ++ A I+K L L+V R
Sbjct: 22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLR 79
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 54.8 bits (132), Expect = 3e-11
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 37 YKKSPQGY--------TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAV 88
K+ Q Y +G + + + SPA K+GL D++L+ NG H + V
Sbjct: 8 SKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVV 67
Query: 89 DYIKKH-PVLNLLVARK 104
+ ++K + LLV
Sbjct: 68 ELVRKSGNSVTLLVLDG 84
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 54.9 bits (132), Expect = 3e-11
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF + + + ++++ A +SG ++ D IL N +++
Sbjct: 23 GFLVKERVS-----------KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSY 71
Query: 85 KKAVDYIK--KHPVLNLLVARK 104
A++ ++ +L+ R
Sbjct: 72 DSALEVLRGIASETHVVLILRG 93
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 57.6 bits (138), Expect = 3e-11
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 38 KKSPQGYT-----DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
K G D GI+V V ++SPA+K GL D+IL+ N DFT + ++AV ++
Sbjct: 9 KGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLL 68
Query: 93 KHP 95
P
Sbjct: 69 DLP 71
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 57.1 bits (137), Expect = 3e-11
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I GG + I +++++ A ++ L + D IL NG D + TH
Sbjct: 92 GISIKGGRENKM----------PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH 141
Query: 85 KKAVDYIKK 93
+AV +KK
Sbjct: 142 DEAVQALKK 150
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 54.0 bits (130), Expect = 5e-11
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I GG + + + A G L++ IL+ NG H
Sbjct: 20 GIAIEGGAN---------TRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEH 70
Query: 85 KKAVDYIKK 93
++A I +
Sbjct: 71 REAARIIAE 79
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 53.3 bits (128), Expect = 9e-11
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
GF + + + ++++ A +SG ++ D IL N +++
Sbjct: 16 GFLVKERVS-----------KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSY 64
Query: 85 KKAVDYIK--KHPVLNLLVARK 104
A++ ++ +L+ R
Sbjct: 65 DSALEVLRGIASETHVVLILRG 86
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 53.3 bits (128), Expect = 1e-10
Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 38 KKSPQGY------TDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDY 90
G + ++ + ++ A+ G L+ D ++ + T ++ +
Sbjct: 34 TVGNLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKL 93
Query: 91 IKKHP---VLNLLVAR 103
++ VL + R
Sbjct: 94 LQNITIGTVLQIKAYR 109
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 52.8 bits (127), Expect = 2e-10
Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 6 QAGTAMECLSPPDGRRVLKC--------GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDE 57
+G++ + ++ G +++ G + ++ + I + +
Sbjct: 2 SSGSSGDTVANASGPLMVEIVKTPGSALGISLTTTSLRN---------KSVITIDRIKPA 52
Query: 58 SPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKK-HPVLNLLVAR 103
S +SG L D IL +G + +A + + L +
Sbjct: 53 SVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP 100
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 51.5 bits (124), Expect = 3e-10
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 15/80 (18%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G + + G + ++ L+ D I + NG +
Sbjct: 23 GLSLSPN-------------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF 69
Query: 85 KKAVDYIKK-HPVLNLLVAR 103
+ + K + +++ V R
Sbjct: 70 QVSYALFKGANGKVSMEVTR 89
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 52.0 bits (125), Expect = 3e-10
Identities = 10/80 (12%), Positives = 23/80 (28%), Gaps = 15/80 (18%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G + + G + ++ L+ D I + NG +
Sbjct: 17 GLSLSPN-------------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF 63
Query: 85 KKAVDYIKK-HPVLNLLVAR 103
+ K + +++ V R
Sbjct: 64 QVCYALFKGANGKVSMEVTR 83
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 51.7 bits (124), Expect = 3e-10
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 38 KKSPQGY-----TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
+ + V + AS +G R D I+ D +T + + +K
Sbjct: 30 TAEEGDLGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLK 89
Query: 93 K 93
Sbjct: 90 S 90
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 51.6 bits (123), Expect = 4e-10
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF + + +YV V + ASK GL+ D+IL+ N +
Sbjct: 32 GFSLSSVEEDG---------IRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSS 82
Query: 86 KAVDYIKKHPVLNLLVAR 103
D P L LLV
Sbjct: 83 MLKD-FLSQPSLGLLVRT 99
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 50.5 bits (121), Expect = 7e-10
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF I G V ++ D GL D I++ N + ++H
Sbjct: 24 GFTIADSPT-------------GQRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHT 68
Query: 86 KAVDYIKKHPV---LNLLVARKGVTST 109
+ VD +K P+ +L++ R S+
Sbjct: 69 EVVDILKDCPIGSETSLIIHRGSGPSS 95
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 50.0 bits (120), Expect = 1e-09
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 16/79 (20%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF I + V V A L D+ILQ N ++ +
Sbjct: 24 GFHISE--------------SLPLTVVAVTAGGSAHG-KLFPGDQILQMNNEPAEDLSWE 68
Query: 86 KAVDYIKKHP-VLNLLVAR 103
+AVD +++ L++ V R
Sbjct: 69 RAVDILREAEDSLSITVVR 87
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 50.0 bits (119), Expect = 1e-09
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF + + +YV V + ASK GL+ D+IL+ N +
Sbjct: 23 GFSLSSV---------EEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSS 73
Query: 86 KAVDYIKKHPVLNLLV 101
D P L LLV
Sbjct: 74 MLKD-FLSQPSLGLLV 88
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 49.8 bits (119), Expect = 2e-09
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 38 KKSPQGY-----TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
+ + V + AS +G + D I+ G D +T + + +K
Sbjct: 22 TVEEGDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLK 81
Query: 93 K--HPVLNLLVAR 103
+ + V
Sbjct: 82 SFGGEEVEMKVVS 94
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 51.0 bits (122), Expect = 3e-09
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 38 KKSPQGY------TDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDY 90
KK+ + + G + ++ L+ D I + NG + +
Sbjct: 121 KKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYAL 180
Query: 91 IKK-HPVLNLLVAR 103
K + +++ V R
Sbjct: 181 FKGANGKVSMEVTR 194
Score = 48.0 bits (114), Expect = 4e-08
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 13/83 (15%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDF--TMV 82
G + GG + G +T VY E + L++ D I NG +
Sbjct: 32 GVIVCGGKNNHV--------TTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSM 83
Query: 83 THKKAVDYIKKHP--VLNLLVAR 103
T K + L V R
Sbjct: 84 TTLKVHQLFHTTYEKAVTLTVFR 106
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 47.1 bits (112), Expect = 2e-08
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 38 KKSPQGY----TDN--GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYI 91
K P+G+ D+ G V + D GL+ D I + + +TH + V+ +
Sbjct: 19 IKGPKGFGFAIADSPTGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVL 76
Query: 92 KKHPV---LNLLVARKGVTS 108
K+ PV + LL+ R G S
Sbjct: 77 KQFPVGADVPLLILRGGPPS 96
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 45.1 bits (107), Expect = 1e-07
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 9/69 (13%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G + G + + PA +SG L + D++ NG +
Sbjct: 24 GVALVESGW--------GSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPL 75
Query: 85 KKAVDYIKK 93
+++
Sbjct: 76 AACQAAVRE 84
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 46.9 bits (110), Expect = 1e-07
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 33 IDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIK 92
I + K G++ + + A + G+R+ +I++ NG H+K V +
Sbjct: 301 IKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALS 360
Query: 93 K-HPVLNLLVARKGVT 107
+++ +
Sbjct: 361 NSVGEIHMKTMPAAMF 376
Score = 46.9 bits (110), Expect = 2e-07
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Query: 1 MAFQHQAGTAMECLSPPDGRRVLKCGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPA 60
+ Q + S + + L+ G + +S G + + + + PA
Sbjct: 186 INTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPA 245
Query: 61 SKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP 95
++SG L + D+I+ NG + IK
Sbjct: 246 ARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLK 281
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 43.6 bits (103), Expect = 4e-07
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 43 GYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
G++ + + A + G+R+ +I++ NG H+K V +
Sbjct: 27 GFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN 77
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 45.4 bits (106), Expect = 5e-07
Identities = 16/85 (18%), Positives = 31/85 (36%)
Query: 25 CGFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTH 84
G K + + + G+ V VY + A +GL DKI+ + T +
Sbjct: 474 VGGKASEQPARVNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSV 533
Query: 85 KKAVDYIKKHPVLNLLVARKGVTST 109
K+ ++ + + R+ T
Sbjct: 534 KRILERYIPGDTVTIHAFRRDELMT 558
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 42.3 bits (100), Expect = 2e-06
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 38 KKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAV-DYIKKHPV 96
++ +G+ + +V SPA ++GLR D IL MV + + V + ++
Sbjct: 26 REPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGE---QMVQNAEDVYEAVRTQSQ 82
Query: 97 LNLLVARKGVTST 109
L + + R T T
Sbjct: 83 LAVQIRRGRETLT 95
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 41.5 bits (98), Expect = 2e-06
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 51 VTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKK-HPVLNLLV 101
+T + +S A+++GL I + NG + + + D + V+ + +
Sbjct: 27 ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 43.6 bits (103), Expect = 2e-06
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 6/84 (7%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHK 85
GF D T ++ V SPA ++GL+ I+ NG T
Sbjct: 75 GFDYTLYKVLD------NDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVES 128
Query: 86 KAVDYIKKHPVLNLLVARKGVTST 109
+ + + + + G
Sbjct: 129 ELLQGSTRQLQIGVYKEVVGEDGE 152
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 41.9 bits (99), Expect = 2e-06
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 38 KKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAV-DYIKKHPV 96
+GIYV EV SP+ + G++ D I++ NG + + + +
Sbjct: 26 SNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNG---RPLVDSSELQEAVLTESP 82
Query: 97 LNLLVARKGVTST 109
L L V R
Sbjct: 83 LLLEVRRGNDDLL 95
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 41.3 bits (97), Expect = 3e-06
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 46 DNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKKHP 95
++ + D + + D I NG + H +K+
Sbjct: 27 VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELK 77
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 113
Score = 40.9 bits (96), Expect = 5e-06
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 46 DNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
+ + ++ + A KSG L D++L+ NG + + D +
Sbjct: 47 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSD 95
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 40.3 bits (95), Expect = 6e-06
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPV---LNLLVAR 103
NGIY + V + PA K + + DKI+ +G ++ + +K +DYI + L + R
Sbjct: 1 NGIYASSVVENMPA-KGKIEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIER 57
Query: 104 KGVTST 109
+
Sbjct: 58 EEKEKR 63
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 41.0 bits (96), Expect = 7e-06
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 42 QGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTH-KKAVDYIKKHPVLNLL 100
QG+ +G+ + V SPASK L I NG + +T A+ I V+N+
Sbjct: 20 QGHQPDGVQIDSVVPGSPASK-VLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINIT 78
Query: 101 VARKGVTST 109
+
Sbjct: 79 TDQGTFHLK 87
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 41.9 bits (99), Expect = 9e-06
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 45 TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVLNLLVARK 104
+G Y+ EV ++PA GL+ +D I+ NG + D IK+ LN++V R
Sbjct: 252 VISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV--SANDVSDVIKRESTLNMVVRRG 309
Query: 105 GVTST 109
Sbjct: 310 NEDIM 314
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 39.9 bits (93), Expect = 1e-05
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTH-KKAVDYIKKHPVLNLLVARKGV 106
G V+ D GL+ D + NG D T + + ++L V R G
Sbjct: 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQ 97
Query: 107 TST 109
Sbjct: 98 QHD 100
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 39.3 bits (92), Expect = 2e-05
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 46 DNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
V + + G L + D+IL+ NG + T + + +K+
Sbjct: 35 KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKE 83
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 38.9 bits (91), Expect = 3e-05
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 12/69 (17%)
Query: 26 GFKIGGGIDQDYKKSPQGYTDNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTH 84
G I I V + A +SG + + D++ + NG
Sbjct: 18 GATIKKDEQTG-----------AIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRP 66
Query: 85 KKAVDYIKK 93
++ + + +
Sbjct: 67 EEIIQILAQ 75
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 38.4 bits (90), Expect = 3e-05
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 44 YTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPV---LNLL 100
T +G+YV V D+ PA+ L D I + +G F + ++ +DYI V + +
Sbjct: 4 VTYDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKIN 60
Query: 101 VARKGVTST 109
Sbjct: 61 YKHGDKNEQ 69
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 39.9 bits (94), Expect = 3e-05
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 38 KKSPQGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPVL 97
++ +G+ + +V SPA ++GLR D IL + + + ++ L
Sbjct: 247 REPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQM--VQNAEDVYEAVRTQSQL 304
Query: 98 NLLVARKGVTST 109
+ + R T T
Sbjct: 305 AVQIRRGRETLT 316
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 39.6 bits (93), Expect = 5e-05
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTH-KKAVDYIKKHPVLNLLVARK 104
GI + EV SPA+++GL+ D I+ N + +K + K ++ L + R
Sbjct: 362 GKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLA--AKPAIIALQIVRG 419
Query: 105 G 105
Sbjct: 420 N 420
Score = 34.6 bits (80), Expect = 0.003
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNG 76
G +V+EV S ++K+G++ D I NG
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNG 292
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 39.6 bits (93), Expect = 5e-05
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTH-KKAVDYIKKHPVLNLLVARK 104
D G+ V V +PA++ GL+ D I+ N + +K +D K VL L + R
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLD--SKPSVLALNIQRG 439
Query: 105 G 105
Sbjct: 440 D 440
Score = 34.6 bits (80), Expect = 0.003
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNG 76
G +V++V S A+K+G++ D I NG
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 37.1 bits (86), Expect = 1e-04
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNGYDFT-MVTHKKAVDYIKKHPVLNLLVARKGV 106
G V+ D GL+ D + NG D T + + ++L V R G
Sbjct: 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQ 79
Query: 107 TST 109
Sbjct: 80 QHD 82
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 36.9 bits (86), Expect = 1e-04
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 45 TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHPV---LNLLV 101
G+YV V PA L D+I +G T ++ V Y+++ + +
Sbjct: 3 EAKGVYVMSVLPNMPA-AGRLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTF 59
Query: 102 ARKGVTST 109
R
Sbjct: 60 IRDRKQHE 67
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 38.4 bits (90), Expect = 1e-04
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTH-KKAVDYIKKHPVLNLLVARKG 105
G+ V + S ++G+R D I+ N T V + +K L + V R
Sbjct: 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQ--EKKKELLVQVLRGP 443
Score = 34.2 bits (79), Expect = 0.004
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNG 76
G V++V SPA +GL+ D I Q N
Sbjct: 282 QGALVSQVNPNSPAELAGLKAGDIITQIND 311
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 35.8 bits (83), Expect = 3e-04
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 46 DNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
N V + + G L + D+I + NG T ++ +++
Sbjct: 24 LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLRE 72
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 37.2 bits (87), Expect = 3e-04
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 47 NGIYVTEVYDESPASKSGLRMHDKILQCNG 76
GI V EV + PA+ +G++++D I+ +
Sbjct: 244 QGIVVNEVSPDGPAANAGIQVNDLIISVDN 273
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 35.2 bits (81), Expect = 7e-04
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 51 VTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP--VLNLLVARKGVTS 108
+ V S AS +GL+ D+I+ +G T V ++ +P L L + R+G
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXSLALEIERQGSPL 65
Query: 109 T 109
+
Sbjct: 66 S 66
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 33.6 bits (77), Expect = 0.003
Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 46 DNGIYVTEVYDESPASKSG-LRMHDKILQCNGYDFTMVTHKKAVDYIKK 93
+ + + ++ G L + D I + NG + + ++
Sbjct: 28 GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGS-DPRALQELLRN 75
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 34.5 bits (80), Expect = 0.003
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 48 GIYVTEVYDESPASKSGLRMHDKILQCNG 76
G +V+EV S ++K+G++ D I NG
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNG 292
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 33.7 bits (78), Expect = 0.004
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
+G+ V V PA L +D I + +
Sbjct: 56 TSGVIVRSVQSNMPA-NGHLEKYDVITKVDD 85
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 33.0 bits (75), Expect = 0.005
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 51 VTEVYDESPASKSGLRMHDKILQCNGY---DFTMVTHKKAVDYIKKHPVLNLLVARKGVT 107
V E+ S A+++ + ++ +G D+ V + + + +
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQR 65
Query: 108 ST 109
Sbjct: 66 RD 67
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 33.8 bits (78), Expect = 0.005
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 44 YTDNGIYVTEVYDESPASKSGLRMHDKILQCNG 76
G + EV A+ +G+ + + +
Sbjct: 239 KDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDD 271
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 33.9 bits (77), Expect = 0.005
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 40 SPQGYTDNGIYVTEVYDESPASKSGLR-MHDKILQCNGYDFTMVTHKKAVDYIKKHP--V 96
S G +N +V EV SPA+ +GLR D I+ + M + I+ H
Sbjct: 105 SFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADT---VMNESEDLFSLIETHEAKP 161
Query: 97 LNLLVARKG 105
L L V
Sbjct: 162 LKLYVYNTD 170
Score = 33.5 bits (76), Expect = 0.006
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 32 GIDQDYKKSPQGYTDNGIYVTEVYDESPASKSGLRMH-DKILQCNG 76
G+ G G +V V + SP ++GL D I+ NG
Sbjct: 1 GMGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSING 46
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 32.6 bits (75), Expect = 0.014
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 45 TDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYI---KKHPVLNLLV 101
+ + V PA K+G R D I+ +G ++ D + V +++
Sbjct: 97 SGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQV-EVVL 155
Query: 102 ARKGVTS 108
G S
Sbjct: 156 HAPGAPS 162
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 30.6 bits (68), Expect = 0.046
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 47 NGIYVTEVYDE--SPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKHP-VLNLLVAR 103
+ V EV SP +++ + D+IL+ NG + ++ D IK+ L LL+
Sbjct: 44 TTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEH 103
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 29.5 bits (67), Expect = 0.18
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 47 NGIYVTEVYDESPASKSGLR 66
+G+ V + PA K+GL+
Sbjct: 251 SGVLVLDAPPSGPAGKAGLQ 270
>2jhp_A VP4 core protein; viral protein, viral capping enzyme, virion PR
viral protein; HET: SAH GUN; 2.5A {Bluetongue virus 10}
PDB: 2jh8_A* 2jha_A* 2jhc_A* 2jh9_A*
Length = 644
Score = 25.8 bits (56), Expect = 3.9
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 46 DNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAV 88
+NG Y T+VY SK +R Q G+ F ++ K V
Sbjct: 40 ENGKYATDVYAYGDVSKWTIR------QLRGHGFIFISTHKNV 76
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS
antifolate complex, methyltransfe multifunctional
enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB:
3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A*
3kjs_A*
Length = 521
Score = 25.5 bits (56), Expect = 4.8
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 9 TAMECLSPPDGRRVLKCGFKIGGG-IDQDYKKSPQGYTDNGIYVTEVYDESP 59
A+ L+ P+ ++ + IGGG + + + P + IY T +
Sbjct: 134 QALRLLASPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQAIYRTTIRASES 185
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase,
tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Length = 528
Score = 25.2 bits (55), Expect = 4.9
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 67 MHDKILQC-NGYDFTMVTHKKAVDYIKKH 94
DK + +G+D T V H V +
Sbjct: 347 RADKEREALDGHDGTWVAHPGLVPVAMEV 375
>3bul_A Methionine synthase; transferase, reactivation conformation,
cobalamin, intermodular interactions, amino-acid
biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli}
SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A*
1k7y_A* 1k98_A* 1bmt_A*
Length = 579
Score = 24.7 bits (54), Expect = 7.9
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 71 ILQCNGYDFT----MVTHKKAVDYIKKH 94
+LQCN Y+ MV +K + K+
Sbjct: 121 VLQCNNYEIVDLGVMVPAEKILRTAKEV 148
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 24.6 bits (54), Expect = 8.0
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 42 QGYTDNGIYVTEVYDESPASKSGLRMHDKILQCNGYDFTMVTHKKAVDYIKKH 94
G+ Y T Y P + D N + KA++YI
Sbjct: 164 HGFDHWIAYGTYDYHLKPMYWNTTAPRDSFYYVNQW-GPEYEASKAIEYINGQ 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.411
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,730,200
Number of extensions: 91917
Number of successful extensions: 514
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 202
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)