BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7951
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BUR4|DOCK1_MOUSE Dedicator of cytokinesis protein 1 OS=Mus musculus GN=Dock1 PE=1
SV=3
Length = 1865
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 49 EMSLTEEMTCVLREWLVLWKSLYLSD-RKSFKALEKRMHELIQLRSKILSQTLPVDELKR 107
++ L +E+T LREW +W+ LY+ D R+ F+++ +++LI+ RS+ILS TLP DELK
Sbjct: 85 DLPLIQEVTTTLREWSTIWRQLYVQDNREMFRSVRHMIYDLIEWRSQILSGTLPQDELKE 144
Query: 108 VKHSVTSTMDVGNK 121
+K VT+ +D GN+
Sbjct: 145 LKKKVTAKIDYGNR 158
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 17 QNIRVLFTDLNTRDTDREKVFLVCYVIRIGSTEM--SLTEEMTCVLR 61
N+R +FTDL ++D REK+ VC ++R+G E+ S T ++T LR
Sbjct: 276 HNLRAVFTDLGSKDLKREKISFVCQIVRVGRMELRDSNTRKLTSGLR 322
>sp|Q14185|DOCK1_HUMAN Dedicator of cytokinesis protein 1 OS=Homo sapiens GN=DOCK1 PE=1
SV=2
Length = 1865
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 49 EMSLTEEMTCVLREWLVLWKSLYLSD-RKSFKALEKRMHELIQLRSKILSQTLPVDELKR 107
++ L +E+T LREW +W+ LY+ D R+ F+++ +++LI+ RS+ILS TLP DELK
Sbjct: 85 DLPLIQEVTTTLREWSTIWRQLYVQDNREMFRSVRHMIYDLIEWRSQILSGTLPQDELKE 144
Query: 108 VKHSVTSTMDVGNK 121
+K VT+ +D GN+
Sbjct: 145 LKKKVTAKIDYGNR 158
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 17 QNIRVLFTDLNTRDTDREKVFLVCYVIRIGSTEM--SLTEEMTCVLR 61
N+R +FTDL ++D REK+ VC ++R+G E+ + T ++T LR
Sbjct: 276 HNLRAVFTDLGSKDLKREKISFVCQIVRVGRMELRDNNTRKLTSGLR 322
>sp|Q9H7D0|DOCK5_HUMAN Dedicator of cytokinesis protein 5 OS=Homo sapiens GN=DOCK5 PE=1
SV=3
Length = 1870
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 49 EMSLTEEMTCVLREWLVLWKSLYLSDRKS-FKALEKRMHELIQLRSKILSQTLPVDELKR 107
E+ L +E+T LREW V+W+ LY++++ + F+ L++ + LI+ RS+ILS TLP DEL
Sbjct: 84 ELPLVQELTSTLREWAVIWRKLYVNNKLTLFRQLQQMTYSLIEWRSQILSGTLPKDELAE 143
Query: 108 VKHSVTSTMDVGNK 121
+K VT+ +D GN+
Sbjct: 144 LKKKVTAKIDHGNR 157
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 18 NIRVLFTDLNTRDTDREKVFLVCYVIRIGSTEMSLTEEMTCVLR 61
N++ +FTDL++ D R +V LVC ++R+G E+ ++ TC LR
Sbjct: 276 NLQAVFTDLSSMDLIRPRVSLVCQIVRVGHMELKEGKKHTCGLR 319
>sp|B2RY04|DOCK5_MOUSE Dedicator of cytokinesis protein 5 OS=Mus musculus GN=Dock5 PE=1
SV=2
Length = 1868
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 49 EMSLTEEMTCVLREWLVLWKSLYLSDRKS-FKALEKRMHELIQLRSKILSQTLPVDELKR 107
E+ L +E+T LREW V+W+ LY++++ + F+ L++ + LI+ RS+ILS TLP DEL
Sbjct: 84 ELPLVQELTNTLREWAVIWRKLYVNNKVTLFRQLQQMTYSLIEWRSQILSGTLPKDELAE 143
Query: 108 VKHSVTSTMDVGNK 121
+K VT+ +D GN+
Sbjct: 144 LKKKVTAKIDHGNR 157
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 17 QNIRVLFTDLNTRDTDREKVFLVCYVIRIGSTEMSLTEEMTCVLR 61
N++ +FTDL++ D R ++ LVC ++R+G E+ ++ TC LR
Sbjct: 275 NNLQAVFTDLSSTDLIRPRISLVCQIVRVGRMELKEGKKHTCGLR 319
>sp|Q92608|DOCK2_HUMAN Dedicator of cytokinesis protein 2 OS=Homo sapiens GN=DOCK2 PE=1
SV=2
Length = 1830
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 45 IGSTEMSLTEEMTCVLREWLVLWKSLYLSDRKS-FKALEKRMHELIQLRSKILSQTLPVD 103
I E+ L +E+T L EW +WK LY++ +K F ++ M++L++ RS++LS TLP D
Sbjct: 80 IIPAEIPLAQEVTTTLWEWGSIWKQLYVASKKERFLQVQSMMYDLMEWRSQLLSGTLPKD 139
Query: 104 ELKRVKHSVTSTMDVGNK 121
ELK +K VTS +D GNK
Sbjct: 140 ELKELKQKVTSKIDYGNK 157
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 29/41 (70%)
Query: 18 NIRVLFTDLNTRDTDREKVFLVCYVIRIGSTEMSLTEEMTC 58
N++V+FTDL +D +R+K++L+C ++R+G ++ T C
Sbjct: 275 NLKVVFTDLGNKDLNRDKIYLICQIVRVGKMDLKDTGAKKC 315
>sp|Q8C3J5|DOCK2_MOUSE Dedicator of cytokinesis protein 2 OS=Mus musculus GN=Dock2 PE=1
SV=3
Length = 1828
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 45 IGSTEMSLTEEMTCVLREWLVLWKSLYLSDRKS-FKALEKRMHELIQLRSKILSQTLPVD 103
I E+ L +E+T L EW +WK LY++ +K F ++ M++L++ RS++LS TLP D
Sbjct: 80 IIPAEIPLAQEVTTTLWEWGSIWKQLYVASKKERFLQVQSMMYDLMEWRSQLLSGTLPKD 139
Query: 104 ELKRVKHSVTSTMDVGNK 121
ELK +K VTS +D GNK
Sbjct: 140 ELKELKQKVTSKIDYGNK 157
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 18 NIRVLFTDLNTRDTDREKVFLVCYVIRIGSTEMSLTEEMTC 58
N++V+FTDL +D +R+K+FL+C ++RIG ++ C
Sbjct: 275 NLKVVFTDLGNKDLNRDKIFLICQIVRIGKMDLKDINAKKC 315
>sp|Q8IZD9|DOCK3_HUMAN Dedicator of cytokinesis protein 3 OS=Homo sapiens GN=DOCK3 PE=1
SV=1
Length = 2030
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 49 EMSLTEEMTCVLREWLVLWKSLYLSDRKS-FKALEKRMHELIQLRSKILSQTLPVDELKR 107
E S+ E+T L+EW LWK LY+ + F L M+ELI LR ++LS L D+++
Sbjct: 82 EDSIVTEVTATLQEWASLWKQLYVKHKVDLFYKLRHVMNELIDLRRQLLSGHLTQDQVRE 141
Query: 108 VKHSVTSTMDVGNK 121
VK +T +D GN+
Sbjct: 142 VKRHITVRLDWGNE 155
>sp|P59764|DOCK4_MOUSE Dedicator of cytokinesis protein 4 OS=Mus musculus GN=Dock4 PE=1
SV=1
Length = 1978
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 47 STEMSLTEEMTCVLREWLVLWKSLYLSDRKS-FKALEKRMHELIQLRSKILSQTLPVDEL 105
TE S+ EMT LR+W +WK LY+ + F L M+E++ LR ++L L D +
Sbjct: 80 PTEDSVITEMTSTLRDWGTMWKQLYVRNEGDLFHRLWHIMNEILDLRRQVLVGHLTHDRM 139
Query: 106 KRVKHSVTSTMDVGNK 121
K VK +T+ +D GN+
Sbjct: 140 KDVKRHITARLDWGNE 155
>sp|Q8N1I0|DOCK4_HUMAN Dedicator of cytokinesis protein 4 OS=Homo sapiens GN=DOCK4 PE=1
SV=3
Length = 1966
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 47 STEMSLTEEMTCVLREWLVLWKSLYLSDRKS-FKALEKRMHELIQLRSKILSQTLPVDEL 105
TE S+ EMT LR+W +WK LY+ + F L M+E++ LR ++L L D +
Sbjct: 80 PTEDSVITEMTSTLRDWGTMWKQLYVRNEGDLFHRLWHIMNEILDLRRQVLVGHLTHDRM 139
Query: 106 KRVKHSVTSTMDVGNK 121
K VK +T+ +D GN+
Sbjct: 140 KDVKRHITARLDWGNE 155
>sp|Q8CIQ7|DOCK3_MOUSE Dedicator of cytokinesis protein 3 OS=Mus musculus GN=Dock3 PE=1
SV=1
Length = 2027
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 49 EMSLTEEMTCVLREWLVLWKSLYLSDRKS-FKALEKRMHELIQLRSKILSQTLPVDELKR 107
E S+ E+T L+EW LWK LY+ + F L M+ELI LR ++LS L D+++
Sbjct: 82 EDSIVTEVTTTLQEWASLWKQLYVKHKVDLFYKLRHVMNELIDLRRQLLSGHLTQDQVRE 141
Query: 108 VKHSVTSTMDVGNK 121
VK +T +D GN+
Sbjct: 142 VKRHITVRLDWGNE 155
>sp|P41877|ISW1_CAEEL Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis
elegans GN=isw-1 PE=1 SV=2
Length = 1009
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 6 EALVVQKSTPHQNIRVLF-TDLNTRDTDREKVFLVCYVIRIGSTEMSLTEEMTCVLREWL 64
+A + + P Q +R+ + T+ T+ E FLVC R+G + ++ EE+ +R
Sbjct: 878 DAKIAKYKAPFQQLRISYGTNKGKTYTEEEDRFLVCETHRLGHDKENVFEELRQSVRMAP 937
Query: 65 VLWKSLYLSDRKSFKALEKRMHELIQL 91
+L R + + L++R + LI L
Sbjct: 938 QFRFDWFLKSRTAME-LQRRCNTLITL 963
>sp|P48053|YPD1_CAEEL Uncharacterized protein C05D11.1 OS=Caenorhabditis elegans
GN=C05D11.1 PE=1 SV=2
Length = 995
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 2 KVFTEALVVQKSTPHQNIRVLFTDLNTRDTDREKVFLVCYVIRIGSTEMSLTEEMTCVLR 61
++FT+ +V S HQ + L + RD R+ C V M + C+L
Sbjct: 645 QIFTQGVVFDPSRIHQCAQKLAGE--ARDRKRDG----CTVASTAVASMVYGKNTNCILF 698
Query: 62 EWLVLWKSLYLSDRKSFKALEKRMHELIQLRSKILSQTL 100
+ LVL K + K E + +L Q+RS + S +
Sbjct: 699 DELVLEKLHEKISKDVMKNPEAVLEKLEQVRSALFSNGV 737
>sp|A1SY50|Y2705_PSYIN UPF0229 protein Ping_2705 OS=Psychromonas ingrahamii (strain 37)
GN=Ping_2705 PE=3 SV=1
Length = 424
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 69 SLYLSDRKSFKALEKRMHELIQLRSKILSQTLPVDELK 106
+L LS RK KALEK++H L+ + +L + +++L+
Sbjct: 177 ALTLSKRKKLKALEKQLHLLVA-KEPVLKNQVEIEQLR 213
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,442,886
Number of Sequences: 539616
Number of extensions: 1336531
Number of successful extensions: 3560
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3530
Number of HSP's gapped (non-prelim): 27
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)