Query psy7951
Match_columns 122
No_of_seqs 145 out of 184
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 22:59:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14604 SH3_9: Variant SH3 do 94.0 0.057 1.2E-06 32.4 2.5 21 20-43 29-49 (49)
2 KOG3775|consensus 94.0 0.035 7.7E-07 47.2 2.1 108 4-119 283-396 (482)
3 smart00326 SH3 Src homology 3 88.9 0.49 1.1E-05 27.2 2.6 23 20-44 35-57 (58)
4 KOG4225|consensus 87.8 0.41 9E-06 41.4 2.5 27 21-50 264-290 (489)
5 cd00174 SH3 Src homology 3 dom 87.7 0.52 1.1E-05 26.8 2.2 32 6-43 22-53 (54)
6 PF00018 SH3_1: SH3 domain; I 87.1 0.82 1.8E-05 26.7 2.9 30 5-39 19-48 (48)
7 PF07653 SH3_2: Variant SH3 do 84.0 1.1 2.3E-05 27.0 2.3 21 21-44 34-54 (55)
8 KOG4225|consensus 83.1 0.34 7.3E-06 41.9 -0.2 25 21-46 338-362 (489)
9 KOG1118|consensus 75.6 1.5 3.3E-05 36.6 1.3 28 17-47 336-363 (366)
10 KOG4575|consensus 75.2 2.3 4.9E-05 38.8 2.4 26 20-45 40-65 (874)
11 KOG2199|consensus 71.5 1.6 3.5E-05 37.5 0.6 25 19-46 247-271 (462)
12 KOG2856|consensus 62.6 3.9 8.4E-05 35.1 1.1 27 17-45 445-471 (472)
13 COG2827 Predicted endonuclease 61.9 40 0.00086 23.3 5.9 63 7-75 7-83 (95)
14 COG0255 RpmC Ribosomal protein 60.7 33 0.00072 22.3 5.1 38 76-113 15-53 (69)
15 KOG1843|consensus 59.6 2.7 5.7E-05 36.3 -0.3 25 17-44 448-472 (473)
16 PF10925 DUF2680: Protein of u 56.9 39 0.00085 21.2 4.8 39 80-118 8-51 (59)
17 KOG3655|consensus 54.6 4.8 0.0001 35.2 0.4 26 18-45 458-483 (484)
18 PF08269 Cache_2: Cache domain 52.3 34 0.00074 22.3 4.2 51 70-120 4-55 (95)
19 PF09851 SHOCT: Short C-termin 46.5 47 0.001 17.9 3.9 28 86-113 3-30 (31)
20 KOG4348|consensus 44.5 9.9 0.00021 33.5 0.8 25 19-46 295-319 (627)
21 KOG4226|consensus 41.7 20 0.00044 29.8 2.1 29 9-45 134-162 (379)
22 KOG1029|consensus 41.1 22 0.00049 33.4 2.5 25 17-44 935-959 (1118)
23 PF10768 FliX: Class II flagel 40.8 71 0.0015 23.5 4.7 40 76-115 71-110 (139)
24 KOG1998|consensus 40.4 7.6 0.00016 38.4 -0.6 50 2-52 92-149 (1548)
25 PRK12787 fliX flagellar assemb 39.8 69 0.0015 23.6 4.5 39 76-114 69-107 (138)
26 PF05596 Taeniidae_ag: Taeniid 32.7 1E+02 0.0022 19.8 3.9 20 49-68 25-44 (64)
27 smart00510 TFS2M Domain in the 32.7 52 0.0011 22.5 2.8 29 80-108 53-86 (102)
28 KOG3875|consensus 31.5 26 0.00055 29.5 1.2 39 11-51 298-336 (362)
29 PRK14087 dnaA chromosomal repl 31.2 40 0.00087 28.8 2.4 43 77-119 224-267 (450)
30 KOG2070|consensus 29.9 73 0.0016 28.6 3.8 96 19-120 49-167 (661)
31 PTZ00097 60S ribosomal protein 27.7 70 0.0015 24.5 2.9 48 65-112 116-164 (175)
32 PF15041 DUF4531: Domain of un 27.2 77 0.0017 24.2 3.0 42 20-75 39-80 (184)
33 PF07500 TFIIS_M: Transcriptio 26.7 37 0.00079 23.3 1.2 31 78-108 53-88 (115)
34 KOG2528|consensus 26.7 37 0.00081 29.8 1.4 28 17-46 33-60 (490)
35 smart00583 SPK domain in SET a 24.4 45 0.00097 23.4 1.3 34 89-122 64-100 (114)
36 KOG3523|consensus 24.2 17 0.00037 33.0 -1.1 25 20-45 641-665 (695)
37 PF14805 THDPS_N_2: Tetrahydro 23.4 1.9E+02 0.004 18.7 4.0 40 80-120 2-41 (70)
38 cd01417 Ribosomal_L19e_E Ribos 23.3 82 0.0018 23.9 2.6 43 65-107 115-158 (164)
39 PTZ00436 60S ribosomal protein 23.2 87 0.0019 26.3 2.9 32 65-96 118-150 (357)
40 KOG2546|consensus 23.1 41 0.0009 29.4 1.1 30 8-45 449-478 (483)
41 KOG2314|consensus 23.1 2.8E+02 0.0062 25.3 6.2 38 54-97 604-641 (698)
42 smart00743 Agenet Tudor-like d 21.8 1.3E+02 0.0028 17.8 2.9 25 4-32 5-29 (61)
43 PF05120 GvpG: Gas vesicle pro 21.6 2.5E+02 0.0055 18.6 5.9 43 76-118 25-67 (79)
44 PF09373 PMBR: Pseudomurein-bi 20.5 1E+02 0.0022 16.7 2.0 22 97-118 2-23 (33)
No 1
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=93.97 E-value=0.057 Score=32.38 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=17.4
Q ss_pred ceEEEeccCCCCCcccceeeeEEE
Q psy7951 20 RVLFTDLNTRDTDREKVFLVCYVI 43 (122)
Q Consensus 20 ~~wy~g~~~~~~~~~gIFp~~~V~ 43 (122)
.+|++|-. ..+.|.||++||.
T Consensus 29 ~~W~~g~~---~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 29 DGWWYGRN---TGRTGLFPANYVE 49 (49)
T ss_dssp TSEEEEEE---TTEEEEEEGGGEE
T ss_pred CCEEEEEE---CCEEEEECHHhCC
Confidence 37999974 5689999999984
No 2
>KOG3775|consensus
Probab=93.96 E-value=0.035 Score=47.20 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=71.3
Q ss_pred cceeeEEeecCCCCCcceEEEeccCCCCCcccceeeeEEEEe-eccccccchhhhHHHHHHHHHH-HHHHhhhh----hh
Q psy7951 4 FTEALVVQKSTPHQNIRVLFTDLNTRDTDREKVFLVCYVIRI-GSTEMSLTEEMTCVLREWLVLW-KSLYLSDR----KS 77 (122)
Q Consensus 4 i~e~~~v~~~~~~~~~~~wy~g~~~~~~~~~gIFp~~~V~~v-~~~e~plV~Eit~~LREW~~~~-~~l~~~~~----~~ 77 (122)
|...++|.-.-+ .-||+|+..+. .+.||||++|++-| .+.+++++.-.+.. |-... -+++.+-+ +-
T Consensus 283 IgDav~Ve~ead----D~W~~G~NlRT-G~~GIFPA~ya~evd~~eed~lg~l~~~~---~~erf~l~~LgSVEv~~HKG 354 (482)
T KOG3775|consen 283 IGDAVLVEAEAD----DFWFEGFNLRT-GERGIFPAFYAHEVDGPEEDLLGSLRSPC---WVERFDLQFLGSVEVPCHKG 354 (482)
T ss_pred cCCeeEeeeccc----chhhccccccc-cccccccceeEEecCCchhhhhhccCCcc---chhheeeeeeeeeEeecccC
Confidence 455666644443 26999999974 56799999999986 44455555444443 22222 12221111 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhhcccc
Q psy7951 78 FKALEKRMHELIQLRSKILSQTLPVDELKRVKHSVTSTMDVG 119 (122)
Q Consensus 78 f~~l~~~m~~L~~~R~qllsgtl~~de~~~lk~~v~~~id~G 119 (122)
=..|-+.|+.+.-.|+.-..+.-|+-.+.++-.+-+..++.|
T Consensus 355 ngVlcqAm~KI~t~ykns~~~~~p~s~~lEislRgV~~s~k~ 396 (482)
T KOG3775|consen 355 NGVLCQAMQKIATAYKNSVHLRPPASCVLEISLRGVKLSLKG 396 (482)
T ss_pred ccHHHHHHHHHHHHhcCCccccCcchhhhhhhcceeEeecCC
Confidence 235677888888999999999999999988888777777664
No 3
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=88.90 E-value=0.49 Score=27.21 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=18.8
Q ss_pred ceEEEeccCCCCCcccceeeeEEEE
Q psy7951 20 RVLFTDLNTRDTDREKVFLVCYVIR 44 (122)
Q Consensus 20 ~~wy~g~~~~~~~~~gIFp~~~V~~ 44 (122)
.+|+.+-..+ .+.|.||++|+..
T Consensus 35 ~~w~~~~~~~--~~~G~vP~~~v~~ 57 (58)
T smart00326 35 DGWWKGRLGR--GKEGLFPSNYVEE 57 (58)
T ss_pred CCeEEEEeCC--CCEEEEchHHEEE
Confidence 3799987654 7889999999865
No 4
>KOG4225|consensus
Probab=87.78 E-value=0.41 Score=41.39 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=22.0
Q ss_pred eEEEeccCCCCCcccceeeeEEEEeecccc
Q psy7951 21 VLFTDLNTRDTDREKVFLVCYVIRIGSTEM 50 (122)
Q Consensus 21 ~wy~g~~~~~~~~~gIFp~~~V~~v~~~e~ 50 (122)
.||.|--. .+.||||++||.++.+.|.
T Consensus 264 nWyeGEhh---Gr~GifP~sYvE~~~~~e~ 290 (489)
T KOG4225|consen 264 NWYEGEHH---GRVGIFPASYVEILTPREK 290 (489)
T ss_pred ceeeeeec---ceecceechheeecCcccc
Confidence 69999765 4789999999999876443
No 5
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=87.69 E-value=0.52 Score=26.82 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=22.4
Q ss_pred eeeEEeecCCCCCcceEEEeccCCCCCcccceeeeEEE
Q psy7951 6 EALVVQKSTPHQNIRVLFTDLNTRDTDREKVFLVCYVI 43 (122)
Q Consensus 6 e~~~v~~~~~~~~~~~wy~g~~~~~~~~~gIFp~~~V~ 43 (122)
|.+.|.... ..+|+.+....+ +.|.||.+|+.
T Consensus 22 d~v~v~~~~----~~~w~~~~~~~~--~~G~vP~~~v~ 53 (54)
T cd00174 22 DIIEVLEKS----DDGWWEGRLLGG--KRGLFPSNYVE 53 (54)
T ss_pred CEEEEEEcC----CCCeEEEEECCC--CEEEEccccCc
Confidence 455554442 237999987655 88999999975
No 6
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=87.14 E-value=0.82 Score=26.69 Aligned_cols=30 Identities=10% Similarity=0.043 Sum_probs=22.5
Q ss_pred ceeeEEeecCCCCCcceEEEeccCCCCCcccceee
Q psy7951 5 TEALVVQKSTPHQNIRVLFTDLNTRDTDREKVFLV 39 (122)
Q Consensus 5 ~e~~~v~~~~~~~~~~~wy~g~~~~~~~~~gIFp~ 39 (122)
+|.+.|....+. +|+.+....+ .+.|+||+
T Consensus 19 Gd~i~v~~~~~~----~Ww~~~~~~~-~~~G~vP~ 48 (48)
T PF00018_consen 19 GDIIEVLEKSDD----GWWKVRNEST-GKEGWVPS 48 (48)
T ss_dssp TEEEEEEEESSS----SEEEEEETTT-TEEEEEEG
T ss_pred CCEEEEEEecCC----CEEEEEECCC-CcEEEeeC
Confidence 466777554542 8999998865 78999995
No 7
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=83.95 E-value=1.1 Score=26.97 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=17.3
Q ss_pred eEEEeccCCCCCcccceeeeEEEE
Q psy7951 21 VLFTDLNTRDTDREKVFLVCYVIR 44 (122)
Q Consensus 21 ~wy~g~~~~~~~~~gIFp~~~V~~ 44 (122)
+|+.|-. ..+.|.||.+||..
T Consensus 34 ~ww~~~~---~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 34 GWWLGEN---NGRRGWFPSSYVEE 54 (55)
T ss_dssp SEEEEEE---TTEEEEEEGGGEEE
T ss_pred CEEEEEE---CCcEEEEcHHHEEE
Confidence 7999977 36779999999864
No 8
>KOG4225|consensus
Probab=83.09 E-value=0.34 Score=41.91 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.2
Q ss_pred eEEEeccCCCCCcccceeeeEEEEee
Q psy7951 21 VLFTDLNTRDTDREKVFLVCYVIRIG 46 (122)
Q Consensus 21 ~wy~g~~~~~~~~~gIFp~~~V~~v~ 46 (122)
.||.|+.. ..+++||||+|||..+.
T Consensus 338 nw~eG~i~-g~~rqgifP~SyVev~~ 362 (489)
T KOG4225|consen 338 NWYEGKIP-GTNRQGIFPASYVEVIK 362 (489)
T ss_pred ceeecccc-ccccccccchhHhhhhh
Confidence 49999986 46789999999999853
No 9
>KOG1118|consensus
Probab=75.60 E-value=1.5 Score=36.60 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=22.7
Q ss_pred CCcceEEEeccCCCCCcccceeeeEEEEeec
Q psy7951 17 QNIRVLFTDLNTRDTDREKVFLVCYVIRIGS 47 (122)
Q Consensus 17 ~~~~~wy~g~~~~~~~~~gIFp~~~V~~v~~ 47 (122)
+--++||-|-.... .|.||++||.++.|
T Consensus 336 QIdenWyeG~~~g~---sG~FPvnYv~vlvp 363 (366)
T KOG1118|consen 336 QIDENWYEGEKHGE---SGMFPVNYVEVLVP 363 (366)
T ss_pred hcCcchhhheecCc---cCccccceeEEecc
Confidence 55678999987643 79999999999765
No 10
>KOG4575|consensus
Probab=75.18 E-value=2.3 Score=38.77 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=23.5
Q ss_pred ceEEEeccCCCCCcccceeeeEEEEe
Q psy7951 20 RVLFTDLNTRDTDREKVFLVCYVIRI 45 (122)
Q Consensus 20 ~~wy~g~~~~~~~~~gIFp~~~V~~v 45 (122)
.+||+|...+|+...|+||.+|||..
T Consensus 40 dgkwwi~lhrNk~~~g~fpsNFvhcL 65 (874)
T KOG4575|consen 40 DGKWWILLHRNKDEDGLFPSNFVHCL 65 (874)
T ss_pred cceeeeeeeecccccccCcccceeec
Confidence 46999999999999999999999983
No 11
>KOG2199|consensus
Probab=71.50 E-value=1.6 Score=37.50 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=20.6
Q ss_pred cceEEEeccCCCCCcccceeeeEEEEee
Q psy7951 19 IRVLFTDLNTRDTDREKVFLVCYVIRIG 46 (122)
Q Consensus 19 ~~~wy~g~~~~~~~~~gIFp~~~V~~v~ 46 (122)
...|..|...+ ..||||.+||..+.
T Consensus 247 ~~~WWKG~~~~---~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 247 DPNWWKGENHR---GIGLFPSNFVTADL 271 (462)
T ss_pred CcchhccccCC---cccccchhhhhhhh
Confidence 45899998764 57999999999855
No 12
>KOG2856|consensus
Probab=62.60 E-value=3.9 Score=35.08 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=21.4
Q ss_pred CCcceEEEeccCCCCCcccceeeeEEEEe
Q psy7951 17 QNIRVLFTDLNTRDTDREKVFLVCYVIRI 45 (122)
Q Consensus 17 ~~~~~wy~g~~~~~~~~~gIFp~~~V~~v 45 (122)
+--++|.+|... ..+.|+||++||.-+
T Consensus 445 eDeqGWC~Grl~--~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 445 EDEQGWCKGRLD--SGRVGLYPANYVECI 471 (472)
T ss_pred cccccccccccc--CCcccccchhhhhcc
Confidence 556789999875 357899999999643
No 13
>COG2827 Predicted endonuclease containing a URI domain [DNA replication, recombination, and repair]
Probab=61.94 E-value=40 Score=23.32 Aligned_cols=63 Identities=14% Similarity=0.061 Sum_probs=33.9
Q ss_pred eeEEeecCCCCCcceEEEeccCCCCCc------ccc--------eeeeEEEEeeccccccchhhhHHHHHHHHHHHHHHh
Q psy7951 7 ALVVQKSTPHQNIRVLFTDLNTRDTDR------EKV--------FLVCYVIRIGSTEMSLTEEMTCVLREWLVLWKSLYL 72 (122)
Q Consensus 7 ~~~v~~~~~~~~~~~wy~g~~~~~~~~------~gI--------Fp~~~V~~v~~~e~plV~Eit~~LREW~~~~~~l~~ 72 (122)
-|+++|+ +| .+|+|+.. |+.+ .|. -|+.-|.--.-++.+..-..=..++.|.--||.-|.
T Consensus 7 vYil~c~-dg----tlY~GvT~-D~~rR~~~H~~GkgakyT~~~~~~~Lv~~e~~~~~~~A~~~E~~iK~~~R~~K~~LI 80 (95)
T COG2827 7 VYILRCA-DG----TLYTGVTT-DLERRLAEHNSGKGAKYTRRYGPVRLVWYEEFDDKSEALRREKRIKKLTRKQKERLI 80 (95)
T ss_pred EEEEEeC-CC----CEEEEecC-CHHHHHHHHhcccccchhccCCceEEEEEeecCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3788888 55 99999985 4432 111 222222221111111111112248899999988887
Q ss_pred hhh
Q psy7951 73 SDR 75 (122)
Q Consensus 73 ~~~ 75 (122)
+.+
T Consensus 81 e~~ 83 (95)
T COG2827 81 EEA 83 (95)
T ss_pred hcc
Confidence 665
No 14
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=60.74 E-value=33 Score=22.29 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHhh
Q psy7951 76 KSFKALEKRMHELIQLRSKILSQTLP-VDELKRVKHSVT 113 (122)
Q Consensus 76 ~~f~~l~~~m~~L~~~R~qllsgtl~-~de~~~lk~~v~ 113 (122)
++-..+...=.+|+..|.|..+|.++ .-..+++|+.|.
T Consensus 15 eL~~~l~eLK~ELf~LR~q~a~g~l~n~~~ir~vRr~IA 53 (69)
T COG0255 15 ELEEELRELKKELFNLRFQLATGQLENPHRIREVRRDIA 53 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 66677778888999999999999997 567788887765
No 15
>KOG1843|consensus
Probab=59.64 E-value=2.7 Score=36.35 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=20.4
Q ss_pred CCcceEEEeccCCCCCcccceeeeEEEE
Q psy7951 17 QNIRVLFTDLNTRDTDREKVFLVCYVIR 44 (122)
Q Consensus 17 ~~~~~wy~g~~~~~~~~~gIFp~~~V~~ 44 (122)
....+||||+.. -++||||++||-+
T Consensus 448 ~s~~dwwtgr~~---~~egifPanyv~~ 472 (473)
T KOG1843|consen 448 DSANDWWTGRGN---GYEGIFPANYVSL 472 (473)
T ss_pred cchhhHHHhhcc---ccccccccceecc
Confidence 567799999875 3689999999854
No 16
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=56.87 E-value=39 Score=21.15 Aligned_cols=39 Identities=10% Similarity=0.361 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhhhhccc
Q psy7951 80 ALEKRMHELIQLRSKIL-----SQTLPVDELKRVKHSVTSTMDV 118 (122)
Q Consensus 80 ~l~~~m~~L~~~R~qll-----sgtl~~de~~~lk~~v~~~id~ 118 (122)
.+...-..+++.|.+++ .|.||+|+-..++..+-.++..
T Consensus 8 el~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~ 51 (59)
T PF10925_consen 8 ELKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEY 51 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 44555566677777776 6999999999999998777654
No 17
>KOG3655|consensus
Probab=54.58 E-value=4.8 Score=35.17 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=20.6
Q ss_pred CcceEEEeccCCCCCcccceeeeEEEEe
Q psy7951 18 NIRVLFTDLNTRDTDREKVFLVCYVIRI 45 (122)
Q Consensus 18 ~~~~wy~g~~~~~~~~~gIFp~~~V~~v 45 (122)
--++|.+|++. | ...|+||++||-++
T Consensus 458 vdegww~g~~p-d-G~~glfPaNyV~li 483 (484)
T KOG3655|consen 458 VDEGWWTGQGP-D-GEVGLFPANYVELI 483 (484)
T ss_pred cCCccccccCC-C-CCcCcccccccccC
Confidence 34789999994 3 37899999999764
No 18
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=52.32 E-value=34 Score=22.28 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=29.4
Q ss_pred HHhhhh-hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhhccccc
Q psy7951 70 LYLSDR-KSFKALEKRMHELIQLRSKILSQTLPVDELKRVKHSVTSTMDVGN 120 (122)
Q Consensus 70 l~~~~~-~~f~~l~~~m~~L~~~R~qllsgtl~~de~~~lk~~v~~~id~GN 120 (122)
++..++ ..=..+...+.-+-....+...|.+|.+|..++-...++.+.+|+
T Consensus 4 ~~~~~k~~l~~~v~~a~~~i~~~~~~~~~g~ls~eea~~~a~~~l~~~r~~~ 55 (95)
T PF08269_consen 4 LLEERKEQLKNVVESAISLIESYYAQAQAGKLSEEEAQQQAREALRALRYGG 55 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHC-STT-----TTHHHHHHHHHH--SBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccCC
Confidence 444455 444444455555556688888999999999999888888888865
No 19
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=46.53 E-value=47 Score=17.88 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhh
Q psy7951 86 HELIQLRSKILSQTLPVDELKRVKHSVT 113 (122)
Q Consensus 86 ~~L~~~R~qllsgtl~~de~~~lk~~v~ 113 (122)
..|-..+...-+|.+|.+|..+.|.++.
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 3455667778899999999999998874
No 20
>KOG4348|consensus
Probab=44.47 E-value=9.9 Score=33.45 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=20.3
Q ss_pred cceEEEeccCCCCCcccceeeeEEEEee
Q psy7951 19 IRVLFTDLNTRDTDREKVFLVCYVIRIG 46 (122)
Q Consensus 19 ~~~wy~g~~~~~~~~~gIFp~~~V~~v~ 46 (122)
-.+||.|=.. .++|+||-+||.+|.
T Consensus 295 daGWweGELn---Gk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 295 DAGWWEGELN---GKKGVFPDNFVELVQ 319 (627)
T ss_pred ccceeeeeec---CccccCCchhhhhcC
Confidence 4579999775 478999999999963
No 21
>KOG4226|consensus
Probab=41.71 E-value=20 Score=29.79 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=21.7
Q ss_pred EEeecCCCCCcceEEEeccCCCCCcccceeeeEEEEe
Q psy7951 9 VVQKSTPHQNIRVLFTDLNTRDTDREKVFLVCYVIRI 45 (122)
Q Consensus 9 ~v~~~~~~~~~~~wy~g~~~~~~~~~gIFp~~~V~~v 45 (122)
++..+++ +|.||-.. ...|-||.+||.-.
T Consensus 134 vmEKssD-----GWWrG~~n---g~VGWFPSNYv~E~ 162 (379)
T KOG4226|consen 134 VMEKSSD-----GWWRGSYN---GQVGWFPSNYVTEE 162 (379)
T ss_pred EEEeccC-----cceecccC---Ceeccccccceehh
Confidence 3455555 69999883 46799999999873
No 22
>KOG1029|consensus
Probab=41.10 E-value=22 Score=33.39 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=19.5
Q ss_pred CCcceEEEeccCCCCCcccceeeeEEEE
Q psy7951 17 QNIRVLFTDLNTRDTDREKVFLVCYVIR 44 (122)
Q Consensus 17 ~~~~~wy~g~~~~~~~~~gIFp~~~V~~ 44 (122)
+...+|.+|.+. .+.||||++|+++
T Consensus 935 ekdgeww~gt~~---~r~gifPan~y~r 959 (1118)
T KOG1029|consen 935 EKDGEWWTGTCG---DREGIFPANYYVR 959 (1118)
T ss_pred eccCceeccccC---Cccccccccceee
Confidence 334489999886 3789999997776
No 23
>PF10768 FliX: Class II flagellar assembly regulator; InterPro: IPR019704 The FliX protein is possibly a transient component of the flagellum that is required for the assembly process. FliX may contribute to the targeting or assembly of the P- and L-ring protein monomers at the cell pole. The family carries a potential N-terminal signal sequence and at least one transmembrane domain indicating that it might function either in or in association with the cell membrane [].
Probab=40.85 E-value=71 Score=23.51 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhh
Q psy7951 76 KSFKALEKRMHELIQLRSKILSQTLPVDELKRVKHSVTST 115 (122)
Q Consensus 76 ~~f~~l~~~m~~L~~~R~qllsgtl~~de~~~lk~~v~~~ 115 (122)
..-..=..++..|-+.|--||+|++|.+.+..|+..+-.+
T Consensus 71 Rav~Rg~~lLD~Ld~Lk~~LL~G~v~~~~L~~L~~~~~~~ 110 (139)
T PF10768_consen 71 RAVRRGHDLLDVLDELKIGLLSGTVPRGDLERLARAVRER 110 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 3444555677888899999999999999999999888544
No 24
>KOG1998|consensus
Probab=40.45 E-value=7.6 Score=38.38 Aligned_cols=50 Identities=30% Similarity=0.558 Sum_probs=43.8
Q ss_pred cccceeeEEeecCCC--------CCcceEEEeccCCCCCcccceeeeEEEEeecccccc
Q psy7951 2 KVFTEALVVQKSTPH--------QNIRVLFTDLNTRDTDREKVFLVCYVIRIGSTEMSL 52 (122)
Q Consensus 2 ~~i~e~~~v~~~~~~--------~~~~~wy~g~~~~~~~~~gIFp~~~V~~v~~~e~pl 52 (122)
.+++|+|+++++..| ++...-|++++.++.. ..+--.|.|++++.|+..+
T Consensus 92 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~-~~~~~l~~i~~~~~~~~~~ 149 (1548)
T KOG1998|consen 92 TNISENFLVRSGSVGLPDLIERLHNLDPVFTDLGIKDLN-TKIELVCQIVRVGRMESAD 149 (1548)
T ss_pred ccccceeeeeecccCCchHHHHHhhcCcccccchHHhhh-hhhhhhhhhhhhhhhhhhh
Confidence 578999999999999 8899999999999998 7798999999877777654
No 25
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=39.84 E-value=69 Score=23.62 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Q psy7951 76 KSFKALEKRMHELIQLRSKILSQTLPVDELKRVKHSVTS 114 (122)
Q Consensus 76 ~~f~~l~~~m~~L~~~R~qllsgtl~~de~~~lk~~v~~ 114 (122)
..-..=..++..|-+.|--||+|++|.+-+..|+..+-.
T Consensus 69 Rav~Rg~~~LD~Ld~Lk~aLL~G~~~~~~L~~L~~~~~e 107 (138)
T PRK12787 69 RSVRRGETALDVLDELKIGLLSGTLDAATLARLRRAVRE 107 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 445555677888999999999999999999999987764
No 26
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=32.74 E-value=1e+02 Score=19.77 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=15.4
Q ss_pred ccccchhhhHHHHHHHHHHH
Q psy7951 49 EMSLTEEMTCVLREWLVLWK 68 (122)
Q Consensus 49 e~plV~Eit~~LREW~~~~~ 68 (122)
++|+.+.|+....||-.+-.
T Consensus 25 ~DPlGqkIa~l~kdw~~~~~ 44 (64)
T PF05596_consen 25 EDPLGQKIAQLAKDWNEICQ 44 (64)
T ss_pred cCchHHHHHHHHHHHHHHHH
Confidence 67888888888888887743
No 27
>smart00510 TFS2M Domain in the central regions of transcription elongation factor S-II (and elsewhere).
Probab=32.70 E-value=52 Score=22.54 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=21.8
Q ss_pred HHHHHHHHHH-----HHHHHHhcCCCCHHHHHHH
Q psy7951 80 ALEKRMHELI-----QLRSKILSQTLPVDELKRV 108 (122)
Q Consensus 80 ~l~~~m~~L~-----~~R~qllsgtl~~de~~~l 108 (122)
.++..+.-|- ..|+.+|+|.+|.+++..|
T Consensus 53 k~Rsl~fNLkd~kN~~Lr~~vl~G~i~p~~lv~M 86 (102)
T smart00510 53 KYRSLYFNLKDKKNPDLRRKVLNGEITPEKLATM 86 (102)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCCCHHHHhcC
Confidence 4555566555 6899999999998887544
No 28
>KOG3875|consensus
Probab=31.46 E-value=26 Score=29.51 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=26.6
Q ss_pred eecCCCCCcceEEEeccCCCCCcccceeeeEEEEeeccccc
Q psy7951 11 QKSTPHQNIRVLFTDLNTRDTDREKVFLVCYVIRIGSTEMS 51 (122)
Q Consensus 11 ~~~~~~~~~~~wy~g~~~~~~~~~gIFp~~~V~~v~~~e~p 51 (122)
+....|.+|++|-- ..+|-...|++|.+||-++++..++
T Consensus 298 K~dq~~~~~~gW~l--at~dg~~tG~iP~NYvkIi~rq~qs 336 (362)
T KOG3875|consen 298 KEDQQGVRCEGWLL--ATRDGGTTGLIPINYVKIIGRQPQS 336 (362)
T ss_pred ccccCCCCCcceee--eeccCCeeeeeehhhhhhhhcCCCC
Confidence 33444556666653 2347889999999999999874443
No 29
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=31.19 E-value=40 Score=28.83 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHhhhhcccc
Q psy7951 77 SFKALEKRMHELIQLRSK-ILSQTLPVDELKRVKHSVTSTMDVG 119 (122)
Q Consensus 77 ~f~~l~~~m~~L~~~R~q-llsgtl~~de~~~lk~~v~~~id~G 119 (122)
.-+.+.+.++.+++.+.| ++++..|.+++..+..++.+|+.+|
T Consensus 224 ~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G 267 (450)
T PRK14087 224 TNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG 267 (450)
T ss_pred HHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC
Confidence 345677778888877766 5667778888988999999999877
No 30
>KOG2070|consensus
Probab=29.85 E-value=73 Score=28.62 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=49.7
Q ss_pred cceEEEeccCCCCCcccceeeeEEEEeeccccccchhh------------hHHHHHHHHH-HHHHHhhhhhhHHHHHHHH
Q psy7951 19 IRVLFTDLNTRDTDREKVFLVCYVIRIGSTEMSLTEEM------------TCVLREWLVL-WKSLYLSDRKSFKALEKRM 85 (122)
Q Consensus 19 ~~~wy~g~~~~~~~~~gIFp~~~V~~v~~~e~plV~Ei------------t~~LREW~~~-~~~l~~~~~~~f~~l~~~m 85 (122)
-++|.-|-.. .+-|-||++||-.|. .+.|+.... +....++.+. +|.++-+.++--+.++...
T Consensus 49 eGGWWEGTln---g~TGWFPsnYV~eik-~e~pLs~~~~~~~~~~k~~~t~~~~~~Yr~vVLk~~lesEkey~~eLq~lL 124 (661)
T KOG2070|consen 49 EGGWWEGTLN---GRTGWFPSNYVREIK-SEKPLSPKSGTLKSPPKGFDTTAINKSYRNVVLKNILESEKEYSKELQTLL 124 (661)
T ss_pred cCcceecccc---CccCccchHHHHHHh-hcCCCCccccCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3479998764 367999999998865 344443222 2223333333 3666555544444444444
Q ss_pred HHHHHHHHHHhcCCCCHHHH----------HHHHHHhhhhccccc
Q psy7951 86 HELIQLRSKILSQTLPVDEL----------KRVKHSVTSTMDVGN 120 (122)
Q Consensus 86 ~~L~~~R~qllsgtl~~de~----------~~lk~~v~~~id~GN 120 (122)
..++.== =-|..|+++|. ..+++.+...|..+|
T Consensus 125 ~t~L~Pl--q~s~iLs~~ey~~LmgNfeeI~t~~qdL~~qlEec~ 167 (661)
T KOG2070|consen 125 STYLRPL--QTSEILSSAEYSYLMGNFEEICTFQQDLVQQLEECT 167 (661)
T ss_pred HHHHhhh--hhccccchHHHHHHhcchHHhHhHHHHHHHHHHHhh
Confidence 4443211 11333444554 344555555555544
No 31
>PTZ00097 60S ribosomal protein L19; Provisional
Probab=27.66 E-value=70 Score=24.49 Aligned_cols=48 Identities=13% Similarity=0.301 Sum_probs=34.9
Q ss_pred HHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Q psy7951 65 VLWKSLYLSDR-KSFKALEKRMHELIQLRSKILSQTLPVDELKRVKHSV 112 (122)
Q Consensus 65 ~~~~~l~~~~~-~~f~~l~~~m~~L~~~R~qllsgtl~~de~~~lk~~v 112 (122)
..++.||..-+ ..|+.+.+++..+......-+--..-.||....|.+.
T Consensus 116 ~~Yr~lY~kaKGn~Fknk~~L~~~I~~~kae~~r~k~l~~q~~a~r~k~ 164 (175)
T PTZ00097 116 HMYHEFYLKSKGNQFKNKRVLIEAIHKTKNEKVKEKKIQDQLEARRAKA 164 (175)
T ss_pred HHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999 9999999999998887665554444456665555443
No 32
>PF15041 DUF4531: Domain of unknown function (DUF4531)
Probab=27.17 E-value=77 Score=24.21 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=32.3
Q ss_pred ceEEEeccCCCCCcccceeeeEEEEeeccccccchhhhHHHHHHHHHHHHHHhhhh
Q psy7951 20 RVLFTDLNTRDTDREKVFLVCYVIRIGSTEMSLTEEMTCVLREWLVLWKSLYLSDR 75 (122)
Q Consensus 20 ~~wy~g~~~~~~~~~gIFp~~~V~~v~~~e~plV~Eit~~LREW~~~~~~l~~~~~ 75 (122)
+-||+|++.+|... +-..+-..+.+-.||=++-||.-|..|+
T Consensus 39 qlwytGltns~~~~--------------aWY~Lpr~ld~p~reAy~RWhgc~~~re 80 (184)
T PF15041_consen 39 QLWYTGLTNSDPRE--------------AWYTLPRALDSPYREAYTRWHGCYQHRE 80 (184)
T ss_pred cccccccCCCcchh--------------hhhhccccccchHHHHHHHhhhHHHHhh
Confidence 46999999877533 2344556778889999999999998886
No 33
>PF07500 TFIIS_M: Transcription factor S-II (TFIIS), central domain; InterPro: IPR003618 Transcription factor S-II (TFIIS) is a eukaryotic protein which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites. TFIIS shows DNA-binding activity only in the presence of RNA polymerase II []. It is widely distributed being found in mammals, Drosophila, yeast and in the archaebacteria Sulfolobus acidocaldarius []. S-II proteins have a relatively conserved C-terminal region but variable N-terminal region, and some members of this family are expressed in a tissue-specific manner [, ]. TFIIS is a modular factor that comprises an N-terminal domain I, a central domain II, and a C-terminal domain III []. The weakly conserved domain I forms a four-helix bundle and is not required for TFIIS activity. Domain II forms a three-helix bundle, and domain III adopts a zinc-ribbon fold with a thin protruding beta-hairpin. Domain II and the linker between domains II and III are required for Pol II binding, whereas domain III is essential for stimulation of RNA cleavage. TFIIS extends from the polymerase surface via a pore to the internal active site, spanning a distance of 100 Angstroms. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. This domain is found in the central region of transcription elongation factor S-II and in several hypothetical proteins.; GO: 0006351 transcription, DNA-dependent; PDB: 3PO3_S 1ENW_A 3GTM_S 1Y1V_S 3NDQ_A 2DME_A.
Probab=26.67 E-value=37 Score=23.32 Aligned_cols=31 Identities=29% Similarity=0.406 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHH-----HHHHHHhcCCCCHHHHHHH
Q psy7951 78 FKALEKRMHELI-----QLRSKILSQTLPVDELKRV 108 (122)
Q Consensus 78 f~~l~~~m~~L~-----~~R~qllsgtl~~de~~~l 108 (122)
-..++..+.-|- ..|..|++|.++.+++..|
T Consensus 53 ~~k~Rsl~~NLkd~~N~~L~~~il~g~i~p~~lv~m 88 (115)
T PF07500_consen 53 KQKFRSLMFNLKDPKNPDLRRRILSGEISPEELVTM 88 (115)
T ss_dssp HHHHHHHHHHHCSSTTCCHHHHHHHSSSTTCHHHHC
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHcCCCCHHHHhcC
Confidence 445566666666 7899999999999988765
No 34
>KOG2528|consensus
Probab=26.65 E-value=37 Score=29.75 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=22.4
Q ss_pred CCcceEEEeccCCCCCcccceeeeEEEEee
Q psy7951 17 QNIRVLFTDLNTRDTDREKVFLVCYVIRIG 46 (122)
Q Consensus 17 ~~~~~wy~g~~~~~~~~~gIFp~~~V~~v~ 46 (122)
.-.++|..|...+. ..|.||++||.++-
T Consensus 33 ~~~~GwLeg~Nsrg--e~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 33 DVIEGWLEGSNSRG--ERGLFPASYVEVTR 60 (490)
T ss_pred ccccccccCCCccC--ccCCCcccceeeec
Confidence 34678999998754 56899999999954
No 35
>smart00583 SPK domain in SET and PHD domain containing proteins and protein kinases.
Probab=24.40 E-value=45 Score=23.38 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=28.0
Q ss_pred HHHHHHH---hcCCCCHHHHHHHHHHhhhhcccccCC
Q psy7951 89 IQLRSKI---LSQTLPVDELKRVKHSVTSTMDVGNKF 122 (122)
Q Consensus 89 ~~~R~ql---lsgtl~~de~~~lk~~v~~~id~GN~~ 122 (122)
++-|-++ ||+..+.|=+.+|+...+-.+|..|||
T Consensus 64 ~~~kirm~Fals~~V~~~Fl~~l~~~~~V~lD~~~RI 100 (114)
T smart00583 64 IEERIRMMFALSGKVEDDFLERIRTIGTVELDEKRRI 100 (114)
T ss_pred HHHHHHHHHhcCCccCHHHHHHHHhcCEEEecCCCcE
Confidence 3444444 688899999999999999999999886
No 36
>KOG3523|consensus
Probab=24.15 E-value=17 Score=33.02 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=20.5
Q ss_pred ceEEEeccCCCCCcccceeeeEEEEe
Q psy7951 20 RVLFTDLNTRDTDREKVFLVCYVIRI 45 (122)
Q Consensus 20 ~~wy~g~~~~~~~~~gIFp~~~V~~v 45 (122)
.|||.|.-.+|.. .|-||.+||.-|
T Consensus 641 DGWl~GeRl~Dge-~GWFP~~~veeI 665 (695)
T KOG3523|consen 641 DGWLEGERLRDGE-RGWFPSSYVEEI 665 (695)
T ss_pred CccccccccccCc-cCcchHHHHHHh
Confidence 3799999999865 589999997654
No 37
>PF14805 THDPS_N_2: Tetrahydrodipicolinate N-succinyltransferase N-terminal; PDB: 3EG4_A 3TDT_A 2TDT_A 1KGT_A 1TDT_A 1KGQ_A 3BXY_A 3GOS_A 3TK8_A.
Probab=23.45 E-value=1.9e+02 Score=18.73 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhhccccc
Q psy7951 80 ALEKRMHELIQLRSKILSQTLPVDELKRVKHSVTSTMDVGN 120 (122)
Q Consensus 80 ~l~~~m~~L~~~R~qllsgtl~~de~~~lk~~v~~~id~GN 120 (122)
.++..|.+..+.|.++-.. -...++++.-..++..||.|-
T Consensus 2 ~l~~~Ie~aw~~r~~l~~~-~~~~~~~~av~~~i~~Ld~G~ 41 (70)
T PF14805_consen 2 QLQKIIEAAWENRDELTPS-NADPELRDAVEEVIELLDSGE 41 (70)
T ss_dssp HHHHHHHHHHHGGGG-BTT-T--HHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhHhhCCCc-cCCHHHHHHHHHHHHHhcCCC
Confidence 5788899999888777733 344666777777888888773
No 38
>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=23.26 E-value=82 Score=23.90 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=29.8
Q ss_pred HHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy7951 65 VLWKSLYLSDR-KSFKALEKRMHELIQLRSKILSQTLPVDELKR 107 (122)
Q Consensus 65 ~~~~~l~~~~~-~~f~~l~~~m~~L~~~R~qllsgtl~~de~~~ 107 (122)
..++.||..-+ ..|++..+++..+......-+--..-.||...
T Consensus 115 ~~Yr~lY~kaKGn~Fknk~~L~~~I~~~kae~~r~k~l~~q~~a 158 (164)
T cd01417 115 HLYHELYLKAKGNVFKNKRVLMEHIHKAKAEKAREKELADQAEA 158 (164)
T ss_pred HHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999 99999999998888775544333333344433
No 39
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=23.23 E-value=87 Score=26.31 Aligned_cols=32 Identities=13% Similarity=0.414 Sum_probs=25.4
Q ss_pred HHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHh
Q psy7951 65 VLWKSLYLSDR-KSFKALEKRMHELIQLRSKIL 96 (122)
Q Consensus 65 ~~~~~l~~~~~-~~f~~l~~~m~~L~~~R~qll 96 (122)
..+++||..-+ ..|+++.++|.-+......-+
T Consensus 118 h~YR~LYrKAKGn~FKNK~~L~e~I~k~KaE~~ 150 (357)
T PTZ00436 118 HIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKK 150 (357)
T ss_pred HHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHH
Confidence 46788999989 999999999988877654433
No 40
>KOG2546|consensus
Probab=23.15 E-value=41 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=22.1
Q ss_pred eEEeecCCCCCcceEEEeccCCCCCcccceeeeEEEEe
Q psy7951 8 LVVQKSTPHQNIRVLFTDLNTRDTDREKVFLVCYVIRI 45 (122)
Q Consensus 8 ~~v~~~~~~~~~~~wy~g~~~~~~~~~gIFp~~~V~~v 45 (122)
|+++.+.+ +||-|.... .-|+||.+||.-+
T Consensus 449 yv~kkndd-----gw~EgV~~~---VTglFpgnyve~~ 478 (483)
T KOG2546|consen 449 YVLKKNDD-----GWYEGVQDG---VTGLFPGNYVEPL 478 (483)
T ss_pred EEEEecCC-----cchhheecC---cceeccCcccccc
Confidence 44455555 799999863 3799999999764
No 41
>KOG2314|consensus
Probab=23.14 E-value=2.8e+02 Score=25.34 Aligned_cols=38 Identities=11% Similarity=0.271 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Q psy7951 54 EEMTCVLREWLVLWKSLYLSDRKSFKALEKRMHELIQLRSKILS 97 (122)
Q Consensus 54 ~Eit~~LREW~~~~~~l~~~~~~~f~~l~~~m~~L~~~R~qlls 97 (122)
+||-..|++|+...- +.+ =......+.||++.||||++
T Consensus 604 KkIkKnLKky~a~Fe----eqD--~~e~~~AsrElvekrRqlm~ 641 (698)
T KOG2314|consen 604 KKIKKNLKKYSAQFE----EQD--RLEQSRASRELVEKRRQLME 641 (698)
T ss_pred HHHHHHHHHHHHHHh----hhh--hHhhhhhHHHHHHHHHHHHH
Confidence 577888999988751 111 11223456777777777764
No 42
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=21.77 E-value=1.3e+02 Score=17.84 Aligned_cols=25 Identities=8% Similarity=0.011 Sum_probs=17.1
Q ss_pred cceeeEEeecCCCCCcceEEEeccCCCCC
Q psy7951 4 FTEALVVQKSTPHQNIRVLFTDLNTRDTD 32 (122)
Q Consensus 4 i~e~~~v~~~~~~~~~~~wy~g~~~~~~~ 32 (122)
+++.+-+.++.+| +||+|.-.+-..
T Consensus 5 ~G~~Ve~~~~~~~----~W~~a~V~~~~~ 29 (61)
T smart00743 5 KGDRVEVFSKEED----SWWEAVVTKVLG 29 (61)
T ss_pred CCCEEEEEECCCC----EEEEEEEEEECC
Confidence 4567777775554 899998765444
No 43
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=21.59 E-value=2.5e+02 Score=18.56 Aligned_cols=43 Identities=12% Similarity=0.233 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhhccc
Q psy7951 76 KSFKALEKRMHELIQLRSKILSQTLPVDELKRVKHSVTSTMDV 118 (122)
Q Consensus 76 ~~f~~l~~~m~~L~~~R~qllsgtl~~de~~~lk~~v~~~id~ 118 (122)
..+..-...-.+|...-.++-+|-+|.+|...-...+..+|+.
T Consensus 25 ~E~~Dp~~i~~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~ 67 (79)
T PF05120_consen 25 RELYDPAAIRRELAELQEALEAGEISEEEFERREDELLDRLEE 67 (79)
T ss_pred HHHcCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4455666667788888899999999999999988888887764
No 44
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=20.45 E-value=1e+02 Score=16.73 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=16.5
Q ss_pred cCCCCHHHHHHHHHHhhhhccc
Q psy7951 97 SQTLPVDELKRVKHSVTSTMDV 118 (122)
Q Consensus 97 sgtl~~de~~~lk~~v~~~id~ 118 (122)
+|+++.+|+.++-.++.+=++.
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ 23 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYES 23 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHH
Confidence 5788889998888877665443
Done!