RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7951
(122 letters)
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 75.9 bits (186), Expect = 1e-18
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 47 STEMSLTEEMTCVLREWLVLWKSLYLS-DRKSFKALEKRMHELIQLRSKILSQTLPVDEL 105
E+ L +E+T L EW +WK LY++ ++ F ++ M++L++ RS++LS TLP DEL
Sbjct: 89 PAEIPLAQEVTTTLWEWGSIWKQLYVASKKERFLQVQSMMYDLMEWRSQLLSGTLPKDEL 148
Query: 106 KRVKHSVTSTMDVGNK 121
K +K VTS +D GNK
Sbjct: 149 KELKQKVTSKIDYGNK 164
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.003
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 40/132 (30%)
Query: 17 QNIRVLFTDL---NTRD--TDREKVF------LVCYVIRIGSTEMSLTE---------EM 56
+ IR ++ + D EK+F Y R +S T+ E
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 57 TC--VLREWLVLWK-------SL--Y-----LSDRKSFKALEKRMHELIQLRSKILSQTL 100
L+ ++ SL Y L+D S ++L + ++ R + +
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE----VVFYRGMTMQVAV 1797
Query: 101 PVDELKRVKHSV 112
P DEL R + +
Sbjct: 1798 PRDELGRSNYGM 1809
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.19
Identities = 7/45 (15%), Positives = 20/45 (44%), Gaps = 16/45 (35%)
Query: 74 DRKSFKALEKRMHELIQLRSKILS-QTLPVDELKRVKHSVTSTMD 117
++++ K L+ + K+ + + P L ++ +TM+
Sbjct: 18 EKQALKKLQASL--------KLYADDSAPA--L-----AIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.23
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 20 RVLFTDLNTRD---TDREKVFLVCYVIRIGSTEMSLTE-EMTCVLREWL 64
++L T TR TD ++ + M+LT E+ +L ++L
Sbjct: 267 KILLT---TRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYL 311
Score = 27.5 bits (60), Expect = 1.3
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 21/109 (19%)
Query: 3 VFTEALV---VQKSTPHQNIRVLFTDLNTRDTDREKVFLVC-----Y-----VIRIGSTE 49
+ ++ + + LF L ++ + + F+ Y I+ +
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 50 MSLTEEMTCVLREWLVLWKSLYLSDRKSFKALE-KRMHELIQLRSKILS 97
S+ M R+ L+ +D + F R+ ++LR +L
Sbjct: 105 PSMMTRMYIEQRD--RLY-----NDNQVFAKYNVSRLQPYLKLRQALLE 146
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 28.2 bits (64), Expect = 0.60
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 78 FKALEKRMHELIQLRSKILSQTLPVDE 104
+ALEKRMHEL + ++ + + E
Sbjct: 117 VEALEKRMHELAEKNYDVIKKKVSWHE 143
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 28.3 bits (64), Expect = 0.70
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 78 FKALEKRMHELIQLRSKILSQTLPVDE 104
F+ +EK M +++ KI + + DE
Sbjct: 119 FEQIEKTMKQIVNENMKIERKVVSRDE 145
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 78 FKALEKRMHELIQLRSKILSQTLPVDE 104
+ALEKRMHEL + ++ + + E
Sbjct: 117 VEALEKRMHELAEKNYDVIKKKVSWHE 143
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 25.8 bits (57), Expect = 3.7
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 76 KSFKALEKRMHELIQLRSKILSQTLPVDELK 106
+ +K E + + L K+L++T+ V +L
Sbjct: 177 QDYKEGEMTLKSALALAIKVLNKTMDVSKLS 207
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2,
X-RAY, structure, structural genomics, PSI-2; 2.40A
{Bifidobacterium longum NCC2705}
Length = 343
Score = 24.9 bits (55), Expect = 8.4
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 14/59 (23%)
Query: 46 GSTEMSLTEEMTCVLREWLVLWKSLY-----LSDR---------KSFKALEKRMHELIQ 90
GSTE+ + + + S+ +++R + E I
Sbjct: 156 GSTELVIGGDGVSAPTTQVQGAFSMNIGSVRMTERHLTNDPPTQTQIDEAVADVDEHID 214
>1nrj_A Signal recognition particle receptor alpha subunit homolog;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Length = 158
Score = 24.8 bits (53), Expect = 9.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 41 YVIRIGSTEMSLTEEMTCVLREWLVLWKSLYLSD 74
+V+ + L +E L L LW SL+LS+
Sbjct: 87 FVVTFAEQTLELNQETQQTLALVLKLWNSLHLSE 120
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 24.5 bits (54), Expect = 9.8
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 76 KSFKALEKRMHELIQLRSKILSQTLPVDELKRVKHSVTSTMDVGNKF 122
+F ++ ELI+ + +SQ+L + L S+ + + F
Sbjct: 176 DTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSI-AIVGKDTPF 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.133 0.379
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,724,477
Number of extensions: 88405
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 14
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)