RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7951
         (122 letters)



>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC
          {Escherichia coli [TaxId: 562]}
          Length = 121

 Score = 25.2 bits (55), Expect = 1.7
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 3  VFTEALVVQKSTPHQNIRVLFTDLNTRDTDREKVFLVC 40
          + T  L   K      +R+L    N    DRE +F + 
Sbjct: 49 IVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFWMN 86


>d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition
           particle receptor alpha-subunit {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 155

 Score = 25.0 bits (54), Expect = 2.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 41  YVIRIGSTEMSLTEEMTCVLREWLVLWKSLYLSD 74
           +V+      + L +E    L   L LW SL+LS+
Sbjct: 87  FVVTFAEQTLELNQETQQTLALVLKLWNSLHLSE 120


>d2oeqa1 a.281.1.2 (A:3-115) YheA-like protein {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 113

 Score = 23.5 bits (51), Expect = 5.4
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 76  KSFKALEKRMHELIQLRSKILSQTLPVDEL 105
               ALE++M   I    +I  +  P++EL
Sbjct: 82  ARLMALEQQMSITIAEVQQIAMK--PLEEL 109


>d2esha1 a.4.5.61 (A:4-117) Hypothetical protein TM0937 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 114

 Score = 23.3 bits (50), Expect = 8.1
 Identities = 6/37 (16%), Positives = 15/37 (40%)

Query: 51  SLTEEMTCVLREWLVLWKSLYLSDRKSFKALEKRMHE 87
            +T +    LRE L   + +        + +++ + E
Sbjct: 78  RITPQGKLYLREILRSLEDMKRRIETLEERIKRVLQE 114


>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 111

 Score = 23.1 bits (50), Expect = 8.3
 Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 76  KSFKALEKRMHELIQLRSKILSQTLPVDEL 105
             F   ++++   +    KI+ +  PV EL
Sbjct: 83  SEFFTKQQQLAIYLSDIEKIVFE--PVSEL 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 415,382
Number of extensions: 16720
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 7
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)