BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7952
(444 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 305 bits (780), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 168/419 (40%), Positives = 243/419 (57%), Gaps = 41/419 (9%)
Query: 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRI 92
E+ + + LK +FGFDSFK LQ+ A ++ D+FV MPTGA + + A
Sbjct: 13 ERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPA------ 66
Query: 93 PPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENK 152
+ G I+ ++S +D ++T + + L +S Q E K
Sbjct: 67 -----LLAKG--------ITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQ---ERK 110
Query: 153 AILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFR 212
+L +L KP+ K+LY+TPE A + SF L LV + L+Y+VVDEAHCVS+WGHDFR
Sbjct: 111 ELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFR 170
Query: 213 PTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV 272
P Y RLG LR G++ P +ALTATA P V++D+ + L KP +FKT FR+NLFYDV
Sbjct: 171 PDYLRLGALRSRLGHA-PCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDV 229
Query: 273 IFDDLLKDSYAHVKEFIEKCLGK--DNKANNCGIIYCRTREHTTDLADALR-RKVNKH-- 327
F +L+ D Y ++K+F K LG+ D + CGI+YCRTRE LA L R VN
Sbjct: 230 QFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAY 289
Query: 328 -------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380
ER+ VQ +M ++ VI ATISFGMG+D+ NVRFV HW + S+ YYQESGR
Sbjct: 290 HAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGR 349
Query: 381 AGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKN------YLSMLEYCEQ 433
AGRDG S+CR+Y+S + + + ++I+ + + +E+ K + + +++ +CE+
Sbjct: 350 AGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKASDKATIMAFDALVTFCEE 408
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 218 bits (555), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 215/428 (50%), Gaps = 42/428 (9%)
Query: 15 KSSSLTGNQQDRKGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
KS N Q ++ L L+ FG F+ + Q +AI+ ++ D F MPT
Sbjct: 3 KSPLPVQNVQSSDKNVAGKEALVKLLRWHFGHADFRGK-QLEAIQAVV-SGRDCFCLMPT 60
Query: 75 GAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRS 134
G + + A ++ PG + +SP+++ + ++ +
Sbjct: 61 GGGKSICYQIPALAK----PGIVLV-----------VSPLIALM-------ENQVMALKE 98
Query: 135 DLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLA 194
E + S Q I E+L KP ++LLYVTPE T+ F L+ L L
Sbjct: 99 KGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLN 158
Query: 195 YIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNK 254
I +DEAHC+S WGHDFRP+YR+L LR + +P++ALTATA P V++D+I L
Sbjct: 159 LIAIDEAHCISSWGHDFRPSYRQLSTLRDSLAD-VPVLALTATAAPKVQKDVIDSLNLRN 217
Query: 255 PYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTT 314
P V K+S R N+FY+V + DLL ++Y + ++ C N C IIYC R
Sbjct: 218 PL-VLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLKSC------GNICAIIYCLERTTCD 270
Query: 315 DLA----------DALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVH 364
DL+ A +N RS V + ++ + +I AT++FGMGID+++VR V H
Sbjct: 271 DLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCH 330
Query: 365 WGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNY 424
+ +P S+ ++YQESGRAGRD L S +Y+ +K +EY+++ + K + ++
Sbjct: 331 FNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENKKSSSSKKPTSDF 390
Query: 425 LSMLEYCE 432
++ YCE
Sbjct: 391 EQIVTYCE 398
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 210/405 (51%), Gaps = 52/405 (12%)
Query: 44 FGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN 103
FG F+ Q +AI L D F+ MPTG G + + I PG +
Sbjct: 615 FGLHRFRTN-QLEAINACLC-GEDCFILMPTGG----GKSLCYQLPGCISPGVTIV---- 664
Query: 104 VRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLEL----IVSGQTKTENKAILEELR 159
ISP+ ++ IV L L++ + +T E +I +L
Sbjct: 665 -------ISPL-----------RSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLS 706
Query: 160 LVKPRIKLLYVTPERAVTES-FHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRL 218
P IKLLYVTPE+ + +++L LA V+DEAHCVS+WGHDFRP Y+RL
Sbjct: 707 KKDPIIKLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRL 766
Query: 219 GELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLL 278
LRQ S+P++ALTATA P VK+DI++ LK KP ++F S R NL Y+V+
Sbjct: 767 NVLRQ-KFQSVPMMALTATANPRVKKDILNQLKMTKP-QIFTMSFNRDNLKYEVLPKKPK 824
Query: 279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHE 328
+ + V E+I+K + N+ GIIYC +R +AD L+++ +
Sbjct: 825 RVALDCV-EWIKK-----HHPNDSGIIYCLSRHECDTMADTLQKEGLAALAYHAGLADSN 878
Query: 329 RSRVQESFM-RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ 387
R VQ ++ + + VI ATI+FGMGID+ +VR+V+H +P S+ YYQESGRAGRDG
Sbjct: 879 RDYVQHKWINQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGET 938
Query: 388 SYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
S+C +++S H + +I+ + + F N SM+ YCE
Sbjct: 939 SHCLLFYSYHDVTRIRRLIQMEKDGNSHTKQTHFNNLYSMVHYCE 983
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/416 (35%), Positives = 209/416 (50%), Gaps = 45/416 (10%)
Query: 29 GKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARS 88
G +EL LK+ FGF+ F+ QK+ I L+ HD FV MPTGA G + +
Sbjct: 228 GADMNKELYDTLKSKFGFNQFR-HRQKQCILSTLM-GHDTFVLMPTGA----GKSLCYQL 281
Query: 89 RVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTK 148
I PG + +SP+ S D K + + E + +
Sbjct: 282 PAVILPGVTVV-----------VSPLRS----LIEDQKMKM---KELGIGCEALTADLGA 323
Query: 149 TENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEW 207
+ I EL P IKLLYVTPE+ + + + + L R LA V+DEAHCVS+W
Sbjct: 324 PAQEKIYAELGSGNPSIKLLYVTPEKISASGRLNSVFFDLHRRGLLARFVIDEAHCVSQW 383
Query: 208 GHDFRPTYRRLGELRQ-FTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRS 266
GHDFRP Y +L LR+ + +PIIALTATA P + D LK K+F +S R
Sbjct: 384 GHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQN-SKLFISSFVRD 442
Query: 267 NLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDL---------- 316
NL YD L+ + + +EK K GI+YC +R+ +
Sbjct: 443 NLKYD-----LIPKAARSLINVVEKM--KQLYPGKSGIVYCLSRKECETVQMMLTKAGLS 495
Query: 317 ADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQ 376
A+ +N + R VQ S++ + +VI ATI+FGMGID+ +VRFV+H+ +P SI YYQ
Sbjct: 496 AEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQ 555
Query: 377 ESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
E+GRAGRDG+ SYC + +S H L +I+ +T + + N L ++ YCE
Sbjct: 556 ETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEGNTTTGVR-SMHLNNVLQVVAYCE 610
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 208 bits (529), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 206/409 (50%), Gaps = 58/409 (14%)
Query: 43 LFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG 102
+FG F+ LQ +A R + R D FV MPTG G + + + G +
Sbjct: 201 IFGNKVFR-PLQHQACRASMER-KDCFVLMPTGG----GKSLCYQLPATLKAGVTIV--- 251
Query: 103 NVRSRNGWISPILS-------SFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAIL 155
ISP+LS + L+F T + S QT ++ A+L
Sbjct: 252 --------ISPLLSLIQDQIVALNLKFGIPAT-------------FLNSQQTSSQAAAVL 290
Query: 156 EELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPT 214
+ELR P KLLYVTPE+ A + SF L+ L R LA VVDEAHCVS+WGHDFRP
Sbjct: 291 QELRRDNPSCKLLYVTPEKIAGSSSFLETLRCLDRKGLLAGFVVDEAHCVSQWGHDFRPD 350
Query: 215 YRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIF 274
YR LG L+Q +P++ALTATA SV QD++ L+ + V K S R NL Y+VI
Sbjct: 351 YRELGCLKQ-NFPRVPVMALTATATESVCQDVLKSLRIPRA-PVLKMSFDRINLKYEVIV 408
Query: 275 DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------- 323
K+ ++E + +D + GI+YC ++ D+A L K
Sbjct: 409 K--TKEPLKQLQELL-----RDRFKDQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHAG 461
Query: 324 VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 383
V +R VQ + GE+ ++ ATI+FGMGID+ +VRFV+H + ++ +YYQESGRAGR
Sbjct: 462 VPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGR 521
Query: 384 DGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
DGLQ+ C + + + +++ ++ + M +YCE
Sbjct: 522 DGLQAQCICLYQKKDFSRVVCMLRNGQGRNMDRFKSAMAQAKKMQQYCE 570
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 207 bits (528), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 145/405 (35%), Positives = 209/405 (51%), Gaps = 52/405 (12%)
Query: 44 FGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN 103
FG +F+ Q +AI LL D F+ MPTG G + + + PG +
Sbjct: 663 FGLHNFRTN-QLEAINAALL-GEDCFILMPTGG----GKSLCYQLPACVSPGVTVV---- 712
Query: 104 VRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLEL----IVSGQTKTENKAILEELR 159
ISP+ ++ IV L L++ + +T +E I +L
Sbjct: 713 -------ISPL-----------RSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLS 754
Query: 160 LVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRL 218
P IKLLYVTPE+ + L++L LA V+DEAHCVS+WGHDFR Y+R+
Sbjct: 755 KKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRM 814
Query: 219 GELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLL 278
LRQ S+P++ALTATA P V++DI++ LK +P +VF S R NL Y V+
Sbjct: 815 NMLRQ-KFPSVPVMALTATANPRVQKDILTQLKILRP-QVFSMSFNRHNLKYYVLPKKPK 872
Query: 279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHE 328
K ++ + E+I K D+ GIIYC +R +AD L+R ++
Sbjct: 873 KVAFDCL-EWIRKHHPYDS-----GIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSA 926
Query: 329 RSRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ 387
R VQ+ ++ + VI ATI+FGMGID+ +VRFV+H +P S+ YYQESGRAGRDG
Sbjct: 927 RDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEI 986
Query: 388 SYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
S+C ++++ H L+ +I + E F N SM+ YCE
Sbjct: 987 SHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCE 1031
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 147/421 (34%), Positives = 222/421 (52%), Gaps = 67/421 (15%)
Query: 41 KALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFIL 100
K +FG SF+ ++ I + + D+FV MPTG G ++ + + G +
Sbjct: 462 KLVFGNHSFR--PNQREIINATMSGCDVFVLMPTGG----GKSLTYQLPALLCAGITLV- 514
Query: 101 NGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRL 160
ISP++S + + + ++ S + +G E IL+EL
Sbjct: 515 ----------ISPLVSLIQDQIMNLLQTNISAAS-------LSAGMEWAEQLEILQELSS 557
Query: 161 VKPRIKLLYVTPER-AVTESFHYLLQHLVRYNK---LAYIVVDEAHCVSEWGHDFRPTYR 216
K + KLLYVTPE+ A +ES LL+HL N LA V+DEAHCVS+WGHDFRP Y+
Sbjct: 558 EKSKYKLLYVTPEKVAKSES---LLRHLEILNSRSLLARFVIDEAHCVSQWGHDFRPDYQ 614
Query: 217 RLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI--F 274
LG L+Q N IP++ALTATA SVK+D++ L VF+ S R NL+Y V+
Sbjct: 615 GLGVLKQKFPN-IPMLALTATATTSVKEDVVQALGLVNCV-VFRQSFNRPNLWYSVVPKT 672
Query: 275 DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALR----------RKV 324
+ L+D + +FI ++N + CGIIYC +R + +ALR +
Sbjct: 673 NKCLED----IDKFI-----RENHFDECGIIYCLSRMDCEKVTEALRVFGHKAAFYHGSM 723
Query: 325 NKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384
+ +R+ VQ+ + + EIN+I AT++FGMGI++ +VRFV+H +P SI Y+QE GRAGRD
Sbjct: 724 DPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRD 783
Query: 385 GLQSYCRIYHSEHSKKSLEYVIKTD-------------TSTKREQLELKFKNYLSMLEYC 431
G +S C +Y+S ++++I ++ LE +N L M+ YC
Sbjct: 784 GQRSSCVLYYSYTDYIRVKHMISQGGLGQGQMKMGYNCKASSGRMLETNTENLLRMVSYC 843
Query: 432 E 432
E
Sbjct: 844 E 844
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 201 bits (512), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 207/405 (51%), Gaps = 52/405 (12%)
Query: 44 FGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN 103
FG +F+ Q +AI LL D F+ MPTG G + + + PG +
Sbjct: 671 FGLHNFRTN-QLEAINAALL-GEDCFILMPTGG----GKSLCYQLPACVSPGVTIV---- 720
Query: 104 VRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLEL----IVSGQTKTENKAILEELR 159
ISP+ ++ IV L ++ + +T +E I +L
Sbjct: 721 -------ISPL-----------RSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLS 762
Query: 160 LVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRL 218
P IKLLYVTPE+ + L++L LA V+DEAHCVS+WGHDFR Y+R+
Sbjct: 763 KKDPIIKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRM 822
Query: 219 GELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLL 278
LRQ S+P++ALTATA P V++DI++ LK +P +VF S R NL Y V+
Sbjct: 823 NMLRQ-KFPSVPVMALTATANPRVQKDILTQLKILRP-QVFSMSFNRHNLKYYVLPKKPK 880
Query: 279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHE 328
K ++ + E+I K D+ GIIYC +R +AD L+R+ ++
Sbjct: 881 KVAFDCL-EWIRKHHPYDS-----GIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSA 934
Query: 329 RSRVQESFM-RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ 387
R VQ ++ + VI ATI+FGMGID+ +VRFV+H +P S+ YYQESGRAGRDG
Sbjct: 935 RDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEI 994
Query: 388 SYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
S+C ++++ H L+ +I + E N SM+ YCE
Sbjct: 995 SHCVLFYTYHDVTRLKRLIMMEKDGNYHTKETHVNNLYSMVHYCE 1039
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 140/425 (32%), Positives = 212/425 (49%), Gaps = 61/425 (14%)
Query: 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIP 93
++L K +FG SF+ ++ I + + D+FV MPTG G ++ + I
Sbjct: 439 RKLEVNNKKVFGNHSFR--PNQREIINATMSGSDVFVLMPTGG----GKSLTYQLPALIC 492
Query: 94 PGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKA 153
G + ISP++S + + + + S + +G E
Sbjct: 493 GGITLV-----------ISPLVSLIQDQIMNLLQANIPAAS-------LSAGMEWAEQLK 534
Query: 154 ILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNK---LAYIVVDEAHCVSEWGHD 210
I +EL + KLLYVTPE+ LL+HL N LA V+DEAHCVS+WGHD
Sbjct: 535 IFQELNSEHSKYKLLYVTPEKVAKSD--SLLRHLENLNSRGLLARFVIDEAHCVSQWGHD 592
Query: 211 FRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFY 270
FRP Y+ LG L+Q N IP++ALTATA SVK+D++ L VF+ S R NL+Y
Sbjct: 593 FRPDYQSLGILKQKFPN-IPVLALTATATASVKEDVVQALGLVNCV-VFRQSFNRPNLWY 650
Query: 271 DVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR-------- 322
V+ K + +FI K+N + CGIIYC +R +++ L+
Sbjct: 651 SVV--PKTKKCLEDIDKFI-----KENHFDECGIIYCLSRMDCEKVSERLQEFGHKAAFY 703
Query: 323 --KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380
+ +R+ +Q + + EIN+I AT++FGMGI++ +VRFV+H +P SI Y+QE GR
Sbjct: 704 HGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 763
Query: 381 AGRDGLQSYCRIYHSEHSKKSLEYVIKTD-------------TSTKREQLELKFKNYLSM 427
AGRDG +S C +Y+ ++++I ++ LE +N L M
Sbjct: 764 AGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNRVASSGRLLETNTENLLRM 823
Query: 428 LEYCE 432
+ YCE
Sbjct: 824 VRYCE 828
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 170/285 (59%), Gaps = 27/285 (9%)
Query: 144 SGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHC 203
S QT TE + + + +L+ +KLLYV+PE+ +T SF HL+ + K++++ +DEAHC
Sbjct: 110 SSQTFTEQQQV--QNKLMSGTLKLLYVSPEKVMTTSFF----HLISHCKVSFVAIDEAHC 163
Query: 204 VSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST 263
+S+WGHDFRP Y +LG L+ ++ PI+ALTATA+ + +QDI+ L P+ V+ S
Sbjct: 164 ISQWGHDFRPEYTQLGGLKSCFPHA-PIMALTATADHATRQDILRHLNLQSPH-VYIGSF 221
Query: 264 FRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK 323
R N+ Y ++ + + +++ LG+ K+ GIIYC +R +A++LR K
Sbjct: 222 DRPNIRYTLV------EKFKPMEQLCRFVLGQKGKS---GIIYCNSRSKVERIAESLRNK 272
Query: 324 ----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPA 373
+ +R +VQ +F R + V+ ATI+FGMGI++ NVRFVVH+ +P SI +
Sbjct: 273 GVSAQAYHAGLETSQREQVQRAFQRDNVQVVVATIAFGMGINKSNVRFVVHFDLPRSIES 332
Query: 374 YYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLE 418
YYQE+GRAGRD L + +++ L ++ + + Q+E
Sbjct: 333 YYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEKPESPQRQIE 377
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 145/406 (35%), Positives = 204/406 (50%), Gaps = 54/406 (13%)
Query: 44 FGFDSFKCELQKKAIRHILLRTHDIFVSMPTGA----VSLVGSVVSARSRVRIPPGADFI 99
FG SF+ Q +AI LL D F+ MPTG + + VSA V I P I
Sbjct: 393 FGLHSFRTN-QLEAINAALL-GEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLI 450
Query: 100 LNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELR 159
++ + L+ D + +TG D+ T + +L
Sbjct: 451 IDQVQK--------------LKTLDIAATYLTG--DI----------TDADASKTYMQLS 484
Query: 160 LVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRL 218
P IKLLYVTPE+ + L++L LA V+DEAHCVS+WGHDFR Y+RL
Sbjct: 485 KKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRL 544
Query: 219 GELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLL 278
LR+ +S+P++ALTATA P V++DI + L+ KP +VF S R NL YDV+
Sbjct: 545 NMLRK-KFHSVPMMALTATANPRVQKDIQNQLEMLKP-QVFTMSFNRHNLKYDVLPKKPK 602
Query: 279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-----------VNKH 327
K + + E+I+K D+ GIIYC +R H D A+ +K +
Sbjct: 603 KVAMDCL-EWIKKYHPHDS-----GIIYCLSR-HECDTTAAILQKEGLAALAYHAGLTDS 655
Query: 328 ERSRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL 386
R VQ+ ++ E VI ATI+FGMGID+ +VR+V+H +P S+ YY ESGRAGRDG
Sbjct: 656 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGE 715
Query: 387 QSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
S+C +++S L +I + + F N SM+ YCE
Sbjct: 716 MSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTHFNNLYSMVHYCE 761
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 189 bits (479), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 146/421 (34%), Positives = 212/421 (50%), Gaps = 63/421 (14%)
Query: 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIP 93
+E+ LK F F+ + Q +AI L D+F+ MPTG + + A
Sbjct: 505 KEVLGCLKHKFHLKGFR-KNQLEAINGTL-SGKDVFILMPTGGGKSLCYQLPA------- 555
Query: 94 PGADFILNGNVRSRNGWISPILSSF-----YLRFRDDKTSIVTGRSDLYQLELIVSG-QT 147
I G R ISP+LS +LR K +I + L +SG Q
Sbjct: 556 ----VIEGGASRGVTLVISPLLSLMQDQLDHLR----KLNIPS---------LPLSGEQP 598
Query: 148 KTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCVSE 206
E + ++ L +KLLYVTPE A + +L+ L LA IV+DEAHCVS
Sbjct: 599 ADERRQVISFLMAKNVLVKLLYVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSH 658
Query: 207 WGHDFRPTYRRLGELR-QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFR 265
WGHDFRP Y++LG LR ++ G IP +ALTATA VK+DII+ L+ ++ K+S R
Sbjct: 659 WGHDFRPDYKQLGLLRDRYQG--IPFMALTATANEIVKKDIINTLRMENCLEL-KSSFNR 715
Query: 266 SNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-- 323
NLFY++ KD Y + FI + + GIIYC +R +A LR
Sbjct: 716 PNLFYEI---KPKKDLYTELYRFIS-----NGHLHESGIIYCLSRTSCEQVAAKLRNDYG 767
Query: 324 ---------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAY 374
+ K ER R+Q + G +I ATI+FGMG+D+ +VRFV+H P S+ Y
Sbjct: 768 LKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGY 827
Query: 375 YQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT---DTSTKREQLELKFKNYLSMLEYC 431
YQE+GRAGRDG ++C +++S + + +I + D TK Q ++ ++++C
Sbjct: 828 YQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMSGDGDAETKERQRQM----LRQVIQFC 883
Query: 432 E 432
E
Sbjct: 884 E 884
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 188 bits (478), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 212/415 (51%), Gaps = 55/415 (13%)
Query: 40 LKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFI 99
L+ FG+ F+ ++ I +L D V MPTG + + A +
Sbjct: 17 LQETFGYQQFRPG--QEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPA-----------LL 63
Query: 100 LNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELR 159
LNG +SP++S K + +++ + S QT+ + ++ R
Sbjct: 64 LNGLTVV----VSPLISLM-------KDQVDQLQANGVAAACLNSTQTREQQLEVMTGCR 112
Query: 160 LVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLG 219
+I+LLY+ PER + ++F L+HL +N + + VDEAHC+S+WGHDFRP Y LG
Sbjct: 113 --TGQIRLLYIAPERLMLDNF---LEHLAHWNPV-LLAVDEAHCISQWGHDFRPEYAALG 166
Query: 220 ELRQ-FTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF-RSNLFYDVIFDDL 277
+LRQ F ++P +ALTATA+ + +QDI+ +L N P + + S+F R N+ Y +
Sbjct: 167 QLRQRFP--TLPFMALTATADDTTRQDIVRLLGLNDP--LIQISSFDRPNIRY------M 216
Query: 278 LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKH 327
L + + + + + + K+ GIIYC +R D A L+ K + +
Sbjct: 217 LMEKFKPLDQLMRYVQEQRGKS---GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENN 273
Query: 328 ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ 387
R+ VQE F R ++ ++ AT++FGMGI++ NVRFVVH+ +P +I +YYQE+GRAGRDGL
Sbjct: 274 VRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLP 333
Query: 388 SYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCEQGYFLVILVF 442
+ +++ L ++ + + +E N + + LV+L +
Sbjct: 334 AEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNY 388
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 188 bits (478), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 135/408 (33%), Positives = 209/408 (51%), Gaps = 59/408 (14%)
Query: 44 FGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN 103
FG SF+ Q + I LL +D FV MPTG G + + + G +
Sbjct: 733 FGLKSFRPN-QLQVINATLL-GNDCFVLMPTGG----GKSLCYQLPAILTEGVTIV---- 782
Query: 104 VRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTEN-KAILEELRLVK 162
ISP+ S + + + + +S +SG+ K + AI +L
Sbjct: 783 -------ISPLKSLIFDQINKLASLDICAKS--------LSGEQKMADVMAIYRDLESQP 827
Query: 163 PRIKLLYVTPERAVTES-FHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGEL 221
P +KLLYVTPE+ + + F L L N ++ V+DEAHCVS+WGHDFRP Y++LG L
Sbjct: 828 PMVKLLYVTPEKISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVL 887
Query: 222 RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI-------F 274
++ N +P IALTATA P V+ DI++ L K K F +S RSNL Y V+
Sbjct: 888 KKRFPN-VPTIALTATATPRVRLDILAQLNL-KNCKWFLSSFNRSNLRYRVLPKKGVSTL 945
Query: 275 DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADAL----RRKVNKH--- 327
DD+ + + + F GIIYC +R+ + + + R V+ H
Sbjct: 946 DDISRYIRSKPQHF-------------SGIIYCLSRKECDETSKKMCKDGVRAVSYHAGL 992
Query: 328 ---ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384
+R Q+ ++ G++ VI AT++FGMGID+ +VRFV+H+ +P SI YYQE+GRAGRD
Sbjct: 993 TDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRD 1052
Query: 385 GLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
G + C +Y++ ++ ++ +D + + ++ N ++ YCE
Sbjct: 1053 GDVADCILYYNYSDMLRIKKMLDSDKALQYNVKKIHVDNLYRIVGYCE 1100
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 188 bits (477), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 206/389 (52%), Gaps = 51/389 (13%)
Query: 40 LKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFI 99
LK++FG+ SF+ + Q++ I + L D V M TG + +S P F
Sbjct: 20 LKSVFGYQSFR-KGQEEVI-NAALNGQDALVVMATG---------NGKSLCYQIPALCF- 67
Query: 100 LNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELR 159
ISP++S K + +++ + + + S QT + + + +
Sbjct: 68 -----DGLTLVISPLISLM-------KDQVDQLQANGIEADFLNSSQTLEQQQQVQN--K 113
Query: 160 LVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLG 219
L+ ++KLLYV+PE+ +T SF L+ Y+K+ +I +DEAHC+S+WGHDFRP Y +LG
Sbjct: 114 LISGQLKLLYVSPEKVMTNSFF----QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLG 169
Query: 220 ELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLK 279
L+ ++ PI+ALTATA+ + +QDI+ L +K + S R N+ Y L+
Sbjct: 170 GLKASFPDA-PIMALTATADYATQQDILRHLNLKNLHK-YIGSFDRPNIRYT------LE 221
Query: 280 DSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHER 329
+ Y +++ L + K+ GIIYC +R +A++LR K + R
Sbjct: 222 EKYKPMEQLTRFVLAQKGKS---GIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIR 278
Query: 330 SRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSY 389
RVQ+ F R + V+ ATI+FGMGI++ NVRFV H+ +P SI +YYQE+GRAGRD L +
Sbjct: 279 ERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAE 338
Query: 390 CRIYHSEHSKKSLEYVIKTDTSTKREQLE 418
+++ L+ ++ T + Q+E
Sbjct: 339 AVLFYEPADYAWLQKILLEKPETPQRQIE 367
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 208/419 (49%), Gaps = 62/419 (14%)
Query: 35 ELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPP 94
E+ +L +F F+ Q +A+ + L+ D+FV MPTG + + A
Sbjct: 665 EVLYRLHEVFKLPGFRPN-QLEAV-NATLQGKDVFVLMPTGGGKSLCYQLPA-------- 714
Query: 95 GADFILNGNVRSRNGWISPILSSF-----YLRFRDDKTSIVTGRSDLYQ----LELIVSG 145
+ +G ISP++S +L ++ K S+ + R Q L ++G
Sbjct: 715 ---VVKSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFING 771
Query: 146 QTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204
+ L+Y++PE + +E + L KLA IVVDEAHCV
Sbjct: 772 ------------------LLDLVYISPEMISASEQCKRAISRLYADGKLARIVVDEAHCV 813
Query: 205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF 264
S WGHDFRP Y+ L ++ + IP+IALTATA V+ DII L+ +P VF +F
Sbjct: 814 SNWGHDFRPDYKELKFFKREYPD-IPMIALTATASEQVRMDIIHNLELKEP--VFLKQSF 870
Query: 265 -RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK 323
R+NL+Y+V + K++ + + + K N GIIYC +++ + ++R
Sbjct: 871 NRTNLYYEV--NKKTKNTIFEICDAV-----KSRFKNQTGIIYCHSKKSCEQTSAQMQRN 923
Query: 324 ----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPA 373
+ ER VQ+++ EI VI AT++FGMGID+ +VRFV H+ +P ++
Sbjct: 924 GIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEG 983
Query: 374 YYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
YYQE+GRAGRDG SYC Y S ++++ +I+ D + RE E ++ YC+
Sbjct: 984 YYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNLDRENKEKHLNKLQQVMAYCD 1042
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 209/414 (50%), Gaps = 53/414 (12%)
Query: 40 LKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFI 99
L+ FG+ F+ ++AI L D V MPTG + + A +
Sbjct: 17 LQETFGYQQFRP--GQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPA-----------LL 63
Query: 100 LNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELR 159
L+G ++ ++S +D ++ ++ + S Q++ + ++ R
Sbjct: 64 LDG--------LTVVVSPLISLMKDQVDQLL---ANGVAAACLNSTQSREQQLEVMAGCR 112
Query: 160 LVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLG 219
+I+LLY+ PER + ++F L HL +N + + VDEAHC+S+WGHDFRP Y LG
Sbjct: 113 --TGQIRLLYIAPERLMLDNF---LDHLAHWNPV-LLAVDEAHCISQWGHDFRPEYAALG 166
Query: 220 ELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF-RSNLFYDVIFDDLL 278
+LRQ ++P +ALTATA+ + +QDII +L N P + + S+F R N+ Y +L
Sbjct: 167 QLRQ-RFPALPFMALTATADDTTRQDIIRLLGLNDP--LIQISSFDRPNIRY------ML 217
Query: 279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHE 328
+ + + + + + K+ GIIYC +R D A L+ + +
Sbjct: 218 MEKFKPLDQLMRYVQEQRGKS---GIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAI 274
Query: 329 RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQS 388
R VQE F R ++ ++ AT++FGMGI++ NVRFVVH+ +P +I +YYQE+GRAGRDGL +
Sbjct: 275 RVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA 334
Query: 389 YCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCEQGYFLVILVF 442
+++ L ++ + + + +E N + + LV+L +
Sbjct: 335 EAMLFYDPADMAWLRRCLEEKPAGQLQDIERHKLNAMGAFAEAQTCRRLVLLNY 388
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 136/422 (32%), Positives = 211/422 (50%), Gaps = 54/422 (12%)
Query: 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIP 93
QE L FG F+ E Q +R++L D FV M TG G V ++P
Sbjct: 213 QEALNALNEFFGHKGFR-EKQWDVVRNVL-GGKDQFVLMSTG----YGKSVC----YQLP 262
Query: 94 PGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKA 153
+LN S +SP++S D T++V+ D +L+ T+ E
Sbjct: 263 ---SLLLN----SMTVVVSPLIS----LMNDQVTTLVSKGIDAVKLD---GHSTQIEWDQ 308
Query: 154 ILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRP 213
+ + RI+ +Y++PE ++ LL ++ ++ + +DEAHCVS+WGHDFR
Sbjct: 309 VANNMH----RIRFIYMSPEMVTSQKGLELLTSCRKH--ISLLAIDEAHCVSQWGHDFRN 362
Query: 214 TYRRLGELRQFTG-NSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV 272
+YR L E+R + +IP+IALTATA V+ D+I+ L+ KP + TS R NL+ V
Sbjct: 363 SYRHLAEIRNRSDLCNIPMIALTATATVRVRDDVIANLRLRKPL-ITTTSFDRKNLYISV 421
Query: 273 IFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR---------- 322
KD + F++ K IIYC+T++ D+ LRR
Sbjct: 422 HSS---KDMAEDLGLFMKTDEVKGRHFGGPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHA 478
Query: 323 KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAG 382
+ K++R + FMR +I I AT++FGMGID+ +VR V+H+G P++I +YYQE GRAG
Sbjct: 479 GLTKNQREKAHTDFMRDKITTIVATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAG 538
Query: 383 RDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCEQGYFLVILVF 442
RDG S CR++ + ++++ ++ +Q E +N ML E LV+
Sbjct: 539 RDGSPSICRVFWAPKDLNTIKFKLRNS-----QQKEEVVENLTMMLRQLE----LVLTTV 589
Query: 443 PC 444
C
Sbjct: 590 GC 591
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 168 bits (426), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 148/256 (57%), Gaps = 25/256 (9%)
Query: 149 TENKAILEELRLVKPRIKLLYVTPE---RAVTESFHYLLQHLVRYNKLAYIVVDEAHCVS 205
++K +L++++ K R+ +Y+TPE R ++ LLQ L + I +DEAHC+S
Sbjct: 563 AQSKNVLQDVKDGKMRV--IYMTPEFCSRGIS-----LLQDLDNRYGITLIAIDEAHCIS 615
Query: 206 EWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFR 265
EWGHDFR YR LG L++ N +PI+ALTATA PS+++DI L + P +V TS R
Sbjct: 616 EWGHDFRSAYRSLGSLKRMLPN-VPIVALTATASPSIREDITKSLNLHNP-QVTCTSFDR 673
Query: 266 SNLFYDVIFDDLLKDSYAHVKEF-IEKCLGKDNKANNCGIIYCRTREHTTDLADALRR-- 322
NL+ DV + +++F I+K G + I+YC TR+ + + L +
Sbjct: 674 PNLYLDVARK--TTNISIDLRQFLIKKQQGSGWEFEGATIVYCPTRKTSEQVTAELIKLG 731
Query: 323 --------KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAY 374
+ +R V FMR EI+ + AT++FGMGI++ ++R V+H+G P + +Y
Sbjct: 732 IACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGMGINKPDIRKVIHYGAPKEMESY 791
Query: 375 YQESGRAGRDGLQSYC 390
YQE GRAGRDGL S C
Sbjct: 792 YQEIGRAGRDGLPSCC 807
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 168 bits (425), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 150/269 (55%), Gaps = 26/269 (9%)
Query: 141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVD 199
++ S K K + + L + +K+LYVTPE+ + ++ F L+ +L+ I +D
Sbjct: 158 MLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISID 217
Query: 200 EAHCVSEWGHDFRPTYRRLGELR-QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258
EAHC S+WGHDFRP Y+ L L+ QF +P++ALTATA V+ D+I +L K K
Sbjct: 218 EAHCCSQWGHDFRPDYKNLSILKTQFP--KVPMVALTATATQKVQNDLIEMLHIPKCVK- 274
Query: 259 FKTSTFRSNLFYDV----IFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTT 314
F +S R NLFY V L+ D A EFI + N GI+YC +R+
Sbjct: 275 FVSSVNRPNLFYSVREKSAVGKLVVDEIA---EFIRESYSN----NESGIVYCFSRKECE 327
Query: 315 DLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVH 364
+A LR + ++ + R +V + + ++ VI T++FGMGI++ +VRFV+H
Sbjct: 328 QIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIH 387
Query: 365 WGMPSSIPAYYQESGRAGRDGLQSYCRIY 393
+ S+ YYQESGRAGRDGL S C ++
Sbjct: 388 HSLSKSMETYYQESGRAGRDGLPSECILF 416
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 130/392 (33%), Positives = 192/392 (48%), Gaps = 44/392 (11%)
Query: 15 KSSSLTGNQQDRKGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
+ S + ++ DR G S+ E T LK F + F+ LQ+ AI ++ + + +
Sbjct: 77 EDSDVVTDRWDRDGFPWSD-EATKILKEQFHLEKFR-PLQRAAINAVMSKEDAVVILSTG 134
Query: 75 GAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRS 134
G SL ++P + NG +SP++S + I+ RS
Sbjct: 135 GGKSLC---------YQLPA---LLANGLALV----VSPLISLV-------EDQILQLRS 171
Query: 135 DLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKL 193
+ + +K E K + + + + +LLYVTPE+ A ++ L+ + L
Sbjct: 172 LGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTPEKLAKSKKMMNKLEKSLSVGFL 231
Query: 194 AYIVVDEAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKF 252
I +DE HC S+WGHDFR Y L L RQF G +PI+ LTATA +V D+ +L
Sbjct: 232 KLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKG--VPILGLTATATSNVLDDVKDMLGI 289
Query: 253 NKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREH 312
F+ RSNL Y V+ +D E I K + +D A GIIYC +R
Sbjct: 290 QAAL-TFRAGFNRSNLKYKVVQKPGSED---ECTEEIAKTIKRDF-AGQTGIIYCLSRND 344
Query: 313 TTDLADALRRK--VNKH--------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFV 362
+A AL+ KH +RS + ++ G+I VI AT++FGMGID+ NVRFV
Sbjct: 345 CEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGIDKPNVRFV 404
Query: 363 VHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 394
+H +P SI YYQESGRAGRDG + C +Y+
Sbjct: 405 IHHSLPKSIENYYQESGRAGRDGQPATCILYY 436
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 128/371 (34%), Positives = 188/371 (50%), Gaps = 61/371 (16%)
Query: 40 LKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTG-AVSLVGSVVSARSRVRIPPGADF 98
LK FG SFK +Q K I +L D V M TG SL + PP
Sbjct: 504 LKTYFGHSSFK-PVQWKVIHSVLEERRDNVVVMATGYGKSLC---------FQYPP---- 549
Query: 99 ILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLEL-----IVSGQTKTENKA 153
+ G + ISP++S +D+ + QLEL + G +++N
Sbjct: 550 VYTGKI---GIVISPLIS-----LMEDQ---------VLQLELSNVPACLLGSAQSKN-- 590
Query: 154 ILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRP 213
IL +++L K R+ +Y+TPE LLQ L + I VDEAHC+SEWGHDFR
Sbjct: 591 ILGDVKLGKYRV--IYITPE--FCSGNLDLLQQLDSSIGITLIAVDEAHCISEWGHDFRS 646
Query: 214 TYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV- 272
++R LG L+ +P+IAL+ATA S+++DIIS L P ++ T R NL+ +V
Sbjct: 647 SFRMLGSLKTALP-LVPVIALSATASSSIREDIISCLNLKDP-QITCTGFDRPNLYLEVG 704
Query: 273 -IFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR--------- 322
++L+D +K F+ + + IIYC +R+ T + L +
Sbjct: 705 RKTGNILQD----LKPFLVRKASSAWEFEGPTIIYCPSRKMTEQVTAELGKLNLACRTYH 760
Query: 323 -KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRA 381
+ ER V F+R EI + AT++FGMGI++ ++R V+H+G P + +YYQE GRA
Sbjct: 761 AGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADIRKVIHYGAPKEMESYYQEIGRA 820
Query: 382 GRDGLQSYCRI 392
GRDGLQS C +
Sbjct: 821 GRDGLQSSCHL 831
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 156/292 (53%), Gaps = 27/292 (9%)
Query: 151 NKAILEELRLVKP-RIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
N+ I E L +K KL Y+TPER + F +LQ + + + +DEAHC+S+WGH
Sbjct: 94 NQEIYERLNGLKEGAYKLFYITPERLTSIEFIRILQGI----DVPLVAIDEAHCISQWGH 149
Query: 210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269
DFRP+YR + L + + I+ALTATA P V DI L K V+ T R NL
Sbjct: 150 DFRPSYRNIEILFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVY-TGFSRENLT 208
Query: 270 YDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------ 323
+ V+ + KD + + E+++ N + GI+Y TR+ + + L+R
Sbjct: 209 FKVVKGEN-KDRF--IDEYVQ------NNRHEAGIVYTATRKEADRIYERLKRNQVRAGR 259
Query: 324 ----VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESG 379
+ R QE F+ E+ V+ AT +FGMGID+ N+RFV+H +P + +YYQE+G
Sbjct: 260 YHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAG 319
Query: 380 RAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYC 431
RAGRDGL S C + S ++I+ ++++ +L K M++YC
Sbjct: 320 RAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDL--KKLRQMVDYC 369
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 189/374 (50%), Gaps = 53/374 (14%)
Query: 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTG-AVSLVGSVVSARSRV 90
+E+++T LK FG SFK +Q K I +L D M TG SL
Sbjct: 533 NEEQVTC-LKMYFGHSSFK-PVQWKVIHSVLEERRDNVAVMATGYGKSLC---------F 581
Query: 91 RIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTE 150
+ PP + G + ISP++S + K S + G ++E
Sbjct: 582 QYPP----VYVGKI---GLVISPLISLMEDQVLQLKMSNIPA---------CFLGSAQSE 625
Query: 151 NKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHD 210
N +L +++L K RI +YVTPE LLQ L + I VDEAHC+SEWGHD
Sbjct: 626 N--VLTDIKLGKYRI--VYVTPEYC--SGNMGLLQQLEADIGITLIAVDEAHCISEWGHD 679
Query: 211 FRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFY 270
FR ++R+LG L+ +PI+ALTATA S+++DI+ L P ++ T R NL+
Sbjct: 680 FRDSFRKLGSLKTALP-MVPIVALTATASSSIREDIVRCLNLRNP-QITCTGFDRPNLYL 737
Query: 271 DV--IFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR------ 322
+V ++L+D ++ F+ K + IIYC +R+ T + LR+
Sbjct: 738 EVRRKTGNILQD----LQPFLVKT-SSHWEFEGPTIIYCPSRKMTQQVTGELRKLNLSCG 792
Query: 323 ----KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQES 378
++ R + F+R EI + ATI+FGMGI++ ++R V+H+G P + +YYQE
Sbjct: 793 TYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEI 852
Query: 379 GRAGRDGLQSYCRI 392
GRAGRDGLQS C +
Sbjct: 853 GRAGRDGLQSSCHV 866
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 197/392 (50%), Gaps = 51/392 (13%)
Query: 35 ELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPP 94
+L L FGF SFK + Q+ I IL D +PTG +S P
Sbjct: 3 KLQQTLYQFFGFTSFK-KGQQDIIESIL-SGKDTIAMLPTGG---------GKSLCYQLP 51
Query: 95 GADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAI 154
G ++L+G V +SP+LS +D+ + R + + + S + E + +
Sbjct: 52 G--YMLDGMVL----IVSPLLS-----LMEDQVQQLKARGE-KRAAALNSMLNRQERQFV 99
Query: 155 LEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPT 214
LE + R K LY++PE + Y+L+ L + ++ V+DEAHC+SEWGHDFRP
Sbjct: 100 LEHIH----RYKFLYLSPEALQSP---YVLEKL-KSVPISLFVIDEAHCISEWGHDFRPD 151
Query: 215 YRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIF 274
Y +LG+LR+ G+ P++ALTATA QD++++L+ + S R N+ V
Sbjct: 152 YSKLGQLRKKLGHP-PVLALTATATKETLQDVMNLLELQHAVRHL-NSVNRPNIALRV-- 207
Query: 275 DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKH------- 327
++ A E I++ + GI+YC TR+ +LA ++ K +
Sbjct: 208 -----ENAADTAEKIDRVIQLVENLQGPGIVYCPTRKWAKELAGEIKSKTSSRADFYHGG 262
Query: 328 ----ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 383
+R +Q+ F+ +++VI T +FGMG+D+ ++R+V+H+ +P + A+ QE GRAGR
Sbjct: 263 LESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRAGR 322
Query: 384 DGLQSYCRIYHSEHSKKSLEYVIKTDTSTKRE 415
DG S + + + E +I+ ++ T E
Sbjct: 323 DGKPSVSILLRAPGDFELQEQIIQMESVTAEE 354
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 162 bits (410), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 145/262 (55%), Gaps = 25/262 (9%)
Query: 148 KTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCVSE 206
K E K + + + ++LLYVTPE+ A ++ L+ + L I +DE HC S+
Sbjct: 162 KDEAKRVEQAITKGSTELRLLYVTPEKLAKSKRMMNQLEKSLGVGYLKLIAIDEVHCCSQ 221
Query: 207 WGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYK-VFKTSTF 264
WGHDFR Y L L RQF G +PI+ LTATA +V D+ +L P VF+
Sbjct: 222 WGHDFRTDYSFLNVLKRQFKG--VPILGLTATATSNVLDDVKKMLGI--PVAIVFRAGFN 277
Query: 265 RSNLFYDVIFDDLLKDSYAHVKEFIEKCLG--KDNKANNCGIIYCRTREHTTDLADALR- 321
R+NL Y V+ +D E +EK + K + GIIYC +R LA +L+
Sbjct: 278 RANLNYKVLTKPGSED------ECVEKIVRTIKRKFSGKTGIIYCLSRNDCEKLAKSLKA 331
Query: 322 ---RKVNKH------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIP 372
R + H +RS + ++ GEI VI AT++FGMGID+ +VRFV+H +P SI
Sbjct: 332 NGIRAKHYHAYMEPVDRSAAHQKWVSGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIE 391
Query: 373 AYYQESGRAGRDGLQSYCRIYH 394
YYQESGRAGRDGL + C +Y+
Sbjct: 392 NYYQESGRAGRDGLPATCILYY 413
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 182/373 (48%), Gaps = 55/373 (14%)
Query: 40 LKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFI 99
L+ +F F+ LQ + + + R DIF+ MPTG G + + G +
Sbjct: 83 LRDVFKLQKFR-PLQLETVNATMARK-DIFLVMPTGG----GKSLCYQLPALCSDGFTLV 136
Query: 100 LNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQL----ELIVSGQTKTENKAIL 155
I P++S +D+ + L QL ++ S +K K +
Sbjct: 137 -----------ICPLIS-----LMEDQLMV------LQQLGISATMLNSSSSKEHVKCVH 174
Query: 156 EELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPT 214
E+ +KL+YVTPE+ A ++ F L+ +L + VDE HC S+WGHDFRP
Sbjct: 175 TEMMNKNSHLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPD 234
Query: 215 YRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI 273
Y+ LG L RQF +I +I LTATA V +D +L K F S R NL+Y+V
Sbjct: 235 YKALGILKRQFP--NISLIGLTATATNHVLKDAQKILCVEKCL-TFTASFNRPNLYYEV- 290
Query: 274 FDDLLKDSYAHVKEFIEKCLGKDNK--ANNCGIIYCRTREHTTDLADALRR--------- 322
+ + ++FIE N GIIYC +++ + + +L++
Sbjct: 291 -----RQKPSSAEDFIENIANLINGRYKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYH 345
Query: 323 -KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRA 381
+ +R++V + E+ V+ AT++FGMGID+ +VRFV+H M S+ YYQESGRA
Sbjct: 346 ANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRA 405
Query: 382 GRDGLQSYCRIYH 394
GRD ++ C +Y+
Sbjct: 406 GRDDWRADCILYY 418
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 155 bits (391), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 144/268 (53%), Gaps = 23/268 (8%)
Query: 141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVD 199
++ + +K K + E+ +KL+YVTPE+ A ++ F L+ + I VD
Sbjct: 160 MLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVD 219
Query: 200 EAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258
E HC S+WGHDFRP Y+ LG L RQF S+ I LTATA V D +L K +
Sbjct: 220 EVHCCSQWGHDFRPDYKALGILKRQFPNASL--IGLTATATNHVLTDAQKILCIEKCF-T 276
Query: 259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNK--ANNCGIIYCRTREHTTDL 316
F S R NL+Y+V + ++ ++FIE + N GIIYC +++ + +
Sbjct: 277 FTASFNRPNLYYEV------RQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQV 330
Query: 317 ADALRR----------KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWG 366
+LR + +++ V + EI V+ AT++FGMGID+ +VRFV+H
Sbjct: 331 TVSLRNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHS 390
Query: 367 MPSSIPAYYQESGRAGRDGLQSYCRIYH 394
M S+ YYQESGRAGRD +++ C +Y+
Sbjct: 391 MSKSMENYYQESGRAGRDDMKADCILYY 418
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 143/268 (53%), Gaps = 23/268 (8%)
Query: 141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVD 199
++ + +K K + E+ +KL+YVTPE+ A ++ F L+ + I VD
Sbjct: 160 MLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVD 219
Query: 200 EAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258
E HC S+WGHDFRP Y+ LG L RQF S+ I LTATA V D +L K +
Sbjct: 220 EVHCCSQWGHDFRPDYKALGILKRQFPNASL--IGLTATATNHVLTDAQKILCIEKCF-T 276
Query: 259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNK--ANNCGIIYCRTREHTTDL 316
F S R NL+Y+V + ++ ++FIE + N GIIYC +++ + +
Sbjct: 277 FTASFNRPNLYYEV------RQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQV 330
Query: 317 ----------ADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWG 366
A A + +++ V + EI V+ AT++FGMGID+ +VRFV+H
Sbjct: 331 TVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHS 390
Query: 367 MPSSIPAYYQESGRAGRDGLQSYCRIYH 394
M S+ YYQESGRAGRD +++ C +Y+
Sbjct: 391 MSKSMENYYQESGRAGRDDMKADCILYY 418
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 196/410 (47%), Gaps = 60/410 (14%)
Query: 3 EGESKDASSAVGKSSSLTGNQQDRKGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHIL 62
E S +ASS + S + + GKV + L+ +F F+ LQ + I +
Sbjct: 51 EDSSAEASSDLDTSPAAWNKEDFPWFGKVKD-----VLQNVFKLQKFR-PLQLETINVTM 104
Query: 63 LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRF 122
R DIF+ MPTG G + + G + I P++S
Sbjct: 105 AR-KDIFLVMPTGG----GKSLCYQLPALCSDGFTLV-----------ICPLIS-----L 143
Query: 123 RDDKTSIVTGRSDLYQL----ELIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVT 177
+D+ + L QL ++ + +K K + E+ ++KL+YVTPE+ A +
Sbjct: 144 MEDQLMV------LKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKIAKS 197
Query: 178 ESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTA 236
+ F L+ +L VDE HC S+WGHDFRP Y+ LG L RQF S+ + LTA
Sbjct: 198 KMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASL--MGLTA 255
Query: 237 TAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKD 296
TA V +D+ +L K F S R NLFY+V + + ++F E +
Sbjct: 256 TATNHVLKDVQKILCVGKCL-TFTASFNRPNLFYEV------RQKPSSAEDFTEDIVKLI 308
Query: 297 NK--ANNCGIIYCRTREHTTDLADALRR----------KVNKHERSRVQESFMRGEINVI 344
N GIIYC +++ + + +L++ + ++++V + E+ V+
Sbjct: 309 NGRYKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVV 368
Query: 345 TATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 394
AT++FGMGID+ +VRFV+H M S+ YYQESGRAGRD ++ C +Y+
Sbjct: 369 VATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYY 418
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 146/263 (55%), Gaps = 29/263 (11%)
Query: 146 QTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVS 205
+ ENKA + + +++ + K +YV+PE V L+ L + ++ I +DEAHC+S
Sbjct: 100 NSNVENKAQMRK-DIMQFKYKFIYVSPESVV--HLKDLIVKLEDFQGISLIAIDEAHCIS 156
Query: 206 EWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVL--KFNKPYKVFKTST 263
+G DFR YR + ++ N +PI+ALTATA V +DI VL K N+P K S
Sbjct: 157 AYGFDFRTAYREITFFKEILPN-VPILALTATATNIVAKDICKVLQLKTNEP---IKASF 212
Query: 264 FRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALR-R 322
R NL+ +V K+ + I K N IIYC T++ T +AD L
Sbjct: 213 DRPNLYLEVRTKS--KNPANDIVPIINK------YPNQSVIIYCLTKKETQKIADILTVH 264
Query: 323 KV----------NKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIP 372
KV N+H +++ +F+ +I ++ ATI+FGMGI++ +VR V+H+G P +I
Sbjct: 265 KVVCGIYHAGLSNEH-KTKTHTNFINNKIKIVVATIAFGMGINKPDVRVVIHYGAPKNIE 323
Query: 373 AYYQESGRAGRDGLQSYCRIYHS 395
YYQE GRAGRDG +SYC +++
Sbjct: 324 GYYQEIGRAGRDGEKSYCYAFYN 346
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 178/375 (47%), Gaps = 58/375 (15%)
Query: 44 FGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN 103
G +F+ Q++A+ IL + V +PTGA + + A R P +
Sbjct: 476 LGHQAFR-PGQERAVMRILSGISTLLV-LPTGAGKSLCYQLPALLYSRRSPCLTLV---- 529
Query: 104 VRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKP 163
+SP+LS DD+ V+G + I SG T+ + +++L+++R +
Sbjct: 530 -------VSPLLS-----LMDDQ---VSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQ- 573
Query: 164 RIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE-LR 222
+ +L +TPE V L + +A+ +DEAHC+S+W H+FRP Y R+ + LR
Sbjct: 574 -VHVLMLTPEALVGAGG---LPPAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLR 629
Query: 223 QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSY 282
+ G + LTATA D+ L + + + +NL V D +D+
Sbjct: 630 ERMGVHC-FLGLTATATRRTASDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMD---RDTD 685
Query: 283 AHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVN----------------- 325
+ ++ GK + + IIYC RE T +A LR ++
Sbjct: 686 QALLTLLQ---GKRFQNLDSIIIYCNRREDTERIAALLRTCLHAAWVPGSGGRAPKTTAE 742
Query: 326 -------KHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQES 378
ER RVQ +FM+G++ V+ AT++FGMG+DR +VR V+H G+P S +Y Q
Sbjct: 743 AYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAV 802
Query: 379 GRAGRDGLQSYCRIY 393
GRAGRDG ++C ++
Sbjct: 803 GRAGRDGQPAHCHLF 817
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 181/378 (47%), Gaps = 59/378 (15%)
Query: 44 FGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN 103
G+ +F+ Q++AI IL + V +PTGA + + A + P +
Sbjct: 493 LGYRAFR-PGQERAIMRILSGISTLLV-LPTGAGKSLCYQLPALLYAQRSPCLTLV---- 546
Query: 104 VRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKP 163
+SP+LS DD+ S + + + SG TK + +++L+++R +
Sbjct: 547 -------VSPLLS-----LMDDQVSDLP---SCLKAACLHSGMTKKQRESVLKKVRAAQ- 590
Query: 164 RIKLLYVTPERAVTESFHYL--LQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE- 220
+ +L V+PE V L + +A+ +DE HC+S+W H+FRP Y R+ +
Sbjct: 591 -VHVLIVSPEALVGCGARGPGSLPQAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKV 649
Query: 221 LRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKD 280
LR+ G + LTATA S +D+ L +++ ++ +NL V D +D
Sbjct: 650 LREHMGVRC-FLGLTATATRSTARDVAQHLGIAGEFELSGSANIPANLHLSVSMD---RD 705
Query: 281 SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTD------------------------- 315
S + ++ G + + IIYC TRE +
Sbjct: 706 SDQALVTLLQ---GDRFRTLDSVIIYC-TRERIQNGWLALLRTCLSMVGDSRPRGCGPEA 761
Query: 316 LADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY 375
+A+A ++ ER RVQ++FMRG + ++ AT++FGMG+DR +VR V+H G+P S +Y
Sbjct: 762 IAEAYHAGMSSQERRRVQQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYV 821
Query: 376 QESGRAGRDGLQSYCRIY 393
Q GRAGRDG ++C ++
Sbjct: 822 QAIGRAGRDGKPAHCHLF 839
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 191/391 (48%), Gaps = 47/391 (12%)
Query: 30 KVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSR 89
+ S++ LT L ++G+DSF+ + Q +AI+ IL + + V +PTGA G + +
Sbjct: 251 EASDENLTKLLNLVYGYDSFR-DGQLQAIKMILGGSSTMLV-LPTGA----GKSLCYQIP 304
Query: 90 VRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKT 149
I PG + +SP++S + + + I G L+ S Q
Sbjct: 305 AMILPGITLV-----------VSPLVSLMIDQLKHLPSIIKGG--------LLSSSQRPE 345
Query: 150 ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
E L +L+ + IK+L+V+PER + F + + + ++ +VVDEAHCVSEW H
Sbjct: 346 EATETLRKLK--EGIIKVLFVSPERLLNVEFLSMFRMSL---SVSLVVVDEAHCVSEWSH 400
Query: 210 DFRPTYRRLGELRQFTG-NSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNL 268
+FRP+Y RL F+ + I+A+TATA Q ++S L+ + + S R N
Sbjct: 401 NFRPSYMRLKASMLFSELKAECILAMTATATTMTLQAVMSSLEIPS-TNLIQKSQLRDNF 459
Query: 269 FYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----- 323
V +K+ + K I+YC+ + T ++ LR
Sbjct: 460 ELSVSLS-----GANRMKDLLILMESPPYKEIRSIIVYCKFQYETDMISKYLRDNNINAK 514
Query: 324 -----VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQES 378
+ +R R+QESF +I V+ AT++FGMG+D+ +V V+H+ +P S+ Y QE
Sbjct: 515 GYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEI 574
Query: 379 GRAGRDGLQSYCRIYHSEHSKKSLEYVIKTD 409
GRAGRDG SYC +++ + L + +D
Sbjct: 575 GRAGRDGRLSYCHLFYDNDTYLKLRSLAHSD 605
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 125/242 (51%), Gaps = 28/242 (11%)
Query: 171 TPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTG---N 227
+PE ++E LL+ KL I++DEAHC+ +WG FRP YRRLG LR+ G
Sbjct: 116 SPETLLSEPVWNLLRQ--PQVKLQGIMLDEAHCLVQWGDSFRPAYRRLGALRRGLGRDKG 173
Query: 228 SIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYA---H 284
IP+ A TATA+ + I+ L P + F+ S R L V ++ Y
Sbjct: 174 QIPLAAFTATADRQQQNLIVEGLNLRSP-ECFQVSPHRPQLHLKV---KMVLSEYCRRQQ 229
Query: 285 VKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQE 334
++ F+ K L + G+IY RTR +LA L+ + + H+R ++++
Sbjct: 230 LRRFLLKHLQES------GLIYVRTRTMAINLAQWLQERGFDSEAYHGGLGPHQRRQLEQ 283
Query: 335 SFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 394
++ G+I+ + T +FG+GID+ + R+V+H+ P + Y QE GRAGRD + C
Sbjct: 284 KWLTGQISSVVCTNAFGLGIDKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAECLTLV 343
Query: 395 SE 396
SE
Sbjct: 344 SE 345
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 10/124 (8%)
Query: 157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYR 216
E + ++ +++YV PE V LQ L + + +A +DEAHCVS+WGHDFRP YR
Sbjct: 248 EEKAMQGMYQIIYVCPETVVR--LIKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYR 305
Query: 217 RLGELR--------QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNL 268
+L LR +F +PI+ALTATA +V++DI+ L +K K+ TS FR NL
Sbjct: 306 KLSVLRENFCASNLEFLEYDVPIMALTATATVNVQEDILESLHLSKETKIVLTSFFRPNL 365
Query: 269 FYDV 272
+ V
Sbjct: 366 QFSV 369
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 10/100 (10%)
Query: 304 IIYCRTREHTTDLAD----------ALRRKVNKHERSRVQESFMRGEINVITATISFGMG 353
IIY TR+ + ++A A + K +V + F ++ V+ ATI+FGMG
Sbjct: 501 IIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMG 560
Query: 354 IDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 393
ID++NVR ++H+G S+ AYYQE+GRAGRDG + C +Y
Sbjct: 561 IDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY 600
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 173/398 (43%), Gaps = 53/398 (13%)
Query: 30 KVSEQELTAKLKALFGFDS-FKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSAR- 87
+ S Q L +G ++ F+ Q +++ LL ++ +PTG + ++ A
Sbjct: 1351 QTSVQHCCWALSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALI 1410
Query: 88 SRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQT 147
+ R PG + V + P++S R D V + L+V
Sbjct: 1411 EKKRQTPGKVMNMVTLV------LVPMMS-----LRQDMMLRVNEKG------LLVCSGN 1453
Query: 148 KTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEW 207
T K + L P L +T E A+T S + L +LA +V+DEAH +
Sbjct: 1454 WTAFKDVRLTLETQLP--DLFILTYESALTNSGLRFFESLATLGRLARVVIDEAHLLLTS 1511
Query: 208 GHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK-TSTFRS 266
G +R R L +G P+ L+AT + ++++ F + V + TST R
Sbjct: 1512 G-AWRTALSRASRL---SGLYAPLHLLSATFPRQL--EMVARQTFCTNFYVLRETSTARE 1565
Query: 267 NLFYDV-IFDD--LLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRT---------REHTT 314
N+FY + +D+ L D +K K D +A II+CRT R H +
Sbjct: 1566 NIFYFLHPYDNTEFLLDLRTLMKR--TKVFEGDGRA----IIFCRTKKDVEYIHRRLHQS 1619
Query: 315 DL-----ADALRRKVNKHERSRVQESF--MRGEINVITATISFGMGIDRQNVRFVVHWGM 367
DL V+ ER ++F G+ ++ AT +FG+GI+ VR VVH+G+
Sbjct: 1620 DLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGL 1679
Query: 368 PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
P+S Y QE+GRAGRDG + +++ ++ YV
Sbjct: 1680 PASSMDYVQETGRAGRDGKYAIAALFYEKYDSTWSSYV 1717
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 106/399 (26%), Positives = 173/399 (43%), Gaps = 53/399 (13%)
Query: 29 GKVSEQELTAKLKALFGFDS-FKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSAR 87
+ S Q L +G ++ F+ Q +++ LL ++ +PTG + ++ A
Sbjct: 1169 SQTSVQHCCWALSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPAL 1228
Query: 88 -SRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQ 146
+ R PG + V + P++S R D V + L+V
Sbjct: 1229 IEKKRQTPGKVMNMVTLV------LVPMMS-----LRQDMMLRVNEKG------LLVCSG 1271
Query: 147 TKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSE 206
T K + L P L +T E A+T S + L +LA +V+DEAH +
Sbjct: 1272 NWTAFKDVRLTLETQLP--DLFILTYESALTNSGLRFFESLATLGRLARVVIDEAHLLLT 1329
Query: 207 WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK-TSTFR 265
G +R R L +G P+ L+AT + ++++ F + V + TST R
Sbjct: 1330 SGA-WRTALSRASRL---SGLYAPLHLLSATFPRQL--EMVARQTFCTNFYVLRETSTAR 1383
Query: 266 SNLFYDV-IFDD--LLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRT---------REHT 313
N+FY + +D+ L D +K K D +A II+CRT R H
Sbjct: 1384 ENIFYFLHPYDNTEFLLDLRTLMKR--TKVFEGDGRA----IIFCRTKKDVEYIHRRLHQ 1437
Query: 314 TDL-----ADALRRKVNKHERSRVQESF--MRGEINVITATISFGMGIDRQNVRFVVHWG 366
+DL V+ ER ++F G+ ++ AT +FG+GI+ VR VVH+G
Sbjct: 1438 SDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYG 1497
Query: 367 MPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
+P+S Y QE+GRAGRDG + +++ ++ YV
Sbjct: 1498 LPASSMDYVQETGRAGRDGKYAIAALFYEKYDSTWSSYV 1536
>sp|P96130|RECG_TREPA ATP-dependent DNA helicase RecG OS=Treponema pallidum (strain
Nichols) GN=recG PE=3 SV=1
Length = 686
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 123/282 (43%), Gaps = 26/282 (9%)
Query: 143 VSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAH 202
++G K+E +A L E LV I L+ T H L VRY+ L +++DE H
Sbjct: 353 LTGNVKSEGRAYLLE-ALVAGEINLVVGT---------HALFSKSVRYHDLRLVIIDEQH 402
Query: 203 CVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEP-----SVKQDI-ISVLKF---- 252
+G R + G G + II ++AT P SV D+ IS++K
Sbjct: 403 ---RFGVLQRSALIQKGREGNPQGKTPHIIMMSATPIPRTLALSVFGDLDISIIKSMPGG 459
Query: 253 NKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAH-VKEFIEKCLGKDNKANNCGIIYCRTRE 311
KP + ++ Y+ + +++ K A+ + I D K+ C +Y +
Sbjct: 460 RKPVITYIARKTKAEKVYEFVGNEIEKGRQAYFIYPRIHDIGLTDLKSVQCMYMYLKNYF 519
Query: 312 HTTDLADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVR-FVVHWGMPSS 370
+A + K+ + E+ R+ + F G ++++ AT +G+D N V+
Sbjct: 520 ARYAVA-MIHSKMTEEEQQRIMKYFSEGTVHILVATSVVEVGVDVPNANCIVIEHAERFG 578
Query: 371 IPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTST 412
+ A +Q GR GR +QSYC + H + + + +K ST
Sbjct: 579 LSALHQLRGRVGRGDVQSYCFLMHGDEMTECAKRRLKIMGST 620
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 111/263 (42%), Gaps = 26/263 (9%)
Query: 154 ILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG--HDF 211
I +++R + + + TP R + + + + +++ ++V+DEA + + G D
Sbjct: 216 IGQQMRQLDYGVDVAVGTPGRVI----DLMKRGALNLSEVQFVVLDEADQMLQVGFAEDV 271
Query: 212 RPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYD 271
+L E RQ + +AT ++ ++ N P V L
Sbjct: 272 EIILEKLPEKRQS-------MMFSATMPSWIRS--LTKKYLNNPLTVDLVGDSDQKLADG 322
Query: 272 VIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-------- 323
+ ++ DSY I + + K C I++ +T+ L+ AL R
Sbjct: 323 ITTYSIIADSYGRAS-IIGPLVTEHAKGGKC-IVFTQTKRDADRLSYALARSFKCEALHG 380
Query: 324 -VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAG 382
+++ +R R F G N++ AT G+D NV ++H+ +P++ + +GR G
Sbjct: 381 DISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTG 440
Query: 383 RDGLQSYCRIYHSEHSKKSLEYV 405
R G + + +S+ ++++ +
Sbjct: 441 RAGKKGSAILIYSQDQSRAVKII 463
>sp|Q0E2Z7|RH41_ORYSJ DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp.
japonica GN=Os02g0201900 PE=2 SV=2
Length = 536
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 128/310 (41%), Gaps = 69/310 (22%)
Query: 130 VTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR 189
V G+ ++ L+V G + +++ ++ I+L+ TP R + L++H V
Sbjct: 234 VLGKGLPFKTALVVGGD------PLAQQIYRIENGIELIVGTPGRLI----DLLMKHNVD 283
Query: 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRL------GELRQFTG----------NSIPIIA 233
NK+ V+DE C+ E G FR ++ ++ F+ NS+ A
Sbjct: 284 LNKVDVFVLDEVDCLLERG--FRDQVMQIFQALSHPQVMMFSATVNSEVEKMSNSLAKNA 341
Query: 234 L-TATAEPS-----VKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKE 287
+ + PS VKQ +I V K K+F+ T + + +
Sbjct: 342 IHISCGNPSRPNKSVKQVVIWVESKQKKQKIFEIMTSKQHFKPPAVV------------- 388
Query: 288 FIEKCLGKD------NKANNCGIIYCRTREHTTDLADALRRKVNKHERSRVQESFMRGEI 341
F+ +G D A ++ + + ++LRR F+ GE+
Sbjct: 389 FVSSRIGADLLSEAITVATGLKVVSIHGDKTMNERRESLRR-------------FLTGEV 435
Query: 342 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK-- 399
+V+ T G G+D VR V+ + MP+SI Y + GRA R G++ ++ +E +
Sbjct: 436 SVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNEEDRNL 495
Query: 400 -KSLEYVIKT 408
+ L ++KT
Sbjct: 496 FRELVQILKT 505
>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis
thaliana GN=RH3 PE=1 SV=2
Length = 748
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 318 DALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE 377
+AL +++H+R R +F +G+ V+ AT G+D NV V+H+ +P+ +
Sbjct: 378 EALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHR 437
Query: 378 SGRAGRDGLQSYCRIYHSEHSKKSL 402
SGR GR G + + H+ K+++
Sbjct: 438 SGRTGRAGKEGSAILMHTSSQKRTV 462
>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana
GN=RH9 PE=2 SV=1
Length = 610
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 26/265 (9%)
Query: 154 ILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG--HDF 211
I +++R + I + TP R + + + + +++ ++V+DEA + + G D
Sbjct: 228 IGQQMRELNYGIDVAVGTPGRII----DLMKRGALNLSEVQFVVLDEADQMLQVGFAEDV 283
Query: 212 RPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYD 271
++L RQ + +AT ++ ++ N P + L
Sbjct: 284 EIILQKLPAKRQS-------MMFSATMPSWIRS--LTKKYLNNPLTIDLVGDSDQKLADG 334
Query: 272 VIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLA---------DALRR 322
+ + DSY I + + K C I++ +T+ LA +AL
Sbjct: 335 ITMYSIAADSYGRA-SIIGPLVKEHGKGGKC-IVFTQTKRDADRLAFGLAKSYKCEALHG 392
Query: 323 KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAG 382
+++ +R R F G +++ AT G+D NV V+H+ +P++ + +GR G
Sbjct: 393 DISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTG 452
Query: 383 RDGLQSYCRIYHSEHSKKSLEYVIK 407
R G + + H + ++++ + K
Sbjct: 453 RAGKKGSAILIHGQDQTRAVKMIEK 477
>sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168)
GN=dbpA PE=1 SV=2
Length = 479
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 300 NNCGIIYCRTREHTTDLADALRR------KVN----KHERSRVQESFMRGEINVITATIS 349
++C II+CRT+EH L D L K++ + +R V F RGE + AT
Sbjct: 241 DSC-IIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV 299
Query: 350 FGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 385
GID +N+ V+++ +P +Y +GR GR G
Sbjct: 300 AARGIDIENISLVINYDLPLEKESYVHRTGRTGRAG 335
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp.
japonica GN=Os12g0611200 PE=2 SV=1
Length = 628
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 281 SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLA---------DALRRKVNKHERSR 331
S H K + L K++ I++ +T+ L+ AL + + +R R
Sbjct: 323 SEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRER 382
Query: 332 VQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCR 391
+ F G N++ AT G+D NV V+H+ +P+S + SGR GR G +
Sbjct: 383 TLKGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAI 442
Query: 392 IYHSEHSKKSLEYV 405
+ HS +++ V
Sbjct: 443 VMHSYQQSRAIRMV 456
>sp|Q8CSV3|RECG_STAES ATP-dependent DNA helicase RecG OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=recG PE=3 SV=1
Length = 682
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 106/241 (43%), Gaps = 17/241 (7%)
Query: 181 HYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQ---FTGNSIP-IIALTA 236
H L+Q V +N + ++ DE H +G + R R G + T IP +A++
Sbjct: 370 HALIQDDVVFNNVGLVITDEQH---RFGVNQRQILREKGAMTNVLFMTATPIPRTLAISV 426
Query: 237 TAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIF---DDLLKDSYAHVK-EFIEKC 292
E D+ S+ + K K KTS + + V+ ++L K A+V IE
Sbjct: 427 FGE----MDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPLIESS 482
Query: 293 LGKDNKANNCGIIYCRTREHTTDLADALRRKVNKHERSRVQESFMRGEINVITATISFGM 352
++ N + ++ + L K++ ++ +V + F + EI+++ +T +
Sbjct: 483 EHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSKHEIDILVSTTVVEV 542
Query: 353 GIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLE-YVIKTDT 410
G++ N F++ + + +Q GR GR QSYC + S ++ +E I T T
Sbjct: 543 GVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPKTETGIERMTIMTQT 602
Query: 411 S 411
+
Sbjct: 603 T 603
>sp|Q3EBD3|RH41_ARATH DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis thaliana
GN=RH41 PE=2 SV=1
Length = 505
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 121/289 (41%), Gaps = 52/289 (17%)
Query: 132 GRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYN 191
G+ ++ L+V G + +L ++ ++L+ TP R V L +H + +
Sbjct: 210 GKGLPFKTALVVGGDPMSG------QLYRIQQGVELIIGTPGRVV----DLLSKHTIELD 259
Query: 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIP-IIALTATAEPSVKQD----- 245
+ V+DE C+ + G FR ++ F S P ++ +AT V++
Sbjct: 260 NIMTFVLDEVDCMLQRG--FRDQVMQI-----FQALSQPQVLLFSATISREVEKVGGSLA 312
Query: 246 ----IISVLKFNKPYKVFKTSTF-------RSNLFYDVIFDDLLKDSYAHVKE----FIE 290
++S+ NKP K + LF D+L+ S H K ++
Sbjct: 313 KEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLF------DILR-SQNHFKPPAVVYVS 365
Query: 291 KCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKHERSRVQESFMRGEINVITATISF 350
+G D AN ++ T A ++ + ER V SF+ GE+ V+ +T
Sbjct: 366 SRVGADLLANAITVV-------TGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVL 418
Query: 351 GMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399
G G+D VR V+ + MPS+I Y GRA R G + ++ +E +
Sbjct: 419 GRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDR 467
>sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=FAL1 PE=3 SV=1
Length = 398
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 115/261 (44%), Gaps = 35/261 (13%)
Query: 141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDE 200
L V+ T KA+ ++++ V +++ TP R + + ++ +V+DE
Sbjct: 118 LNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRV----LDMIKRQVLNVRNCKILVLDE 173
Query: 201 AHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK--FNKPYKV 258
A + F+ +++ ++ +I ++ ++AT + +DI+ + K + P K+
Sbjct: 174 ADELLGETLGFK---QQIYDIFTKLPPTIQVVVVSAT----MSKDILEITKKFMSDPVKI 226
Query: 259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKE----FIEKCLGKDNKANNCGIIYCRTREHTT 314
+ D I D++K Y V++ F C D+ +I+C TR+
Sbjct: 227 L--------VKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVD 278
Query: 315 DLADALRR----------KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVH 364
L+ L + + + ER +V F G+ V+ +T + GID Q + V++
Sbjct: 279 WLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVIN 338
Query: 365 WGMPSSIPAYYQESGRAGRDG 385
+ +P ++ Y GR+GR G
Sbjct: 339 YDIPDNLENYIHRIGRSGRFG 359
>sp|A4RHF1|DED1_MAGO7 ATP-dependent RNA helicase DED1 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=DED1 PE=3 SV=2
Length = 671
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 101/248 (40%), Gaps = 33/248 (13%)
Query: 154 ILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRP 213
I +LR ++ LL TP R V + + + + Y+V+DEA + + G F P
Sbjct: 314 IGSQLRQIERGCDLLVATPGRLV----DLIERGRISLCNIKYLVLDEADRMLDMG--FEP 367
Query: 214 TYRRLGELRQFTGNSIP------IIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSN 267
RR+ E G +P + +AT ++Q LK V + + N
Sbjct: 368 QIRRIVE-----GEDMPNVQDRQTLMFSATFPGYIQQLARDFLKDYIFLSVGRVGSTSEN 422
Query: 268 LFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKV--- 324
+ V+ D +H+ + + G +I+ T+ + +L+D L+ +
Sbjct: 423 ITQRVMEVKHRDDKISHLLDLLSTHGG------GLTLIFVETKRNADELSDFLQNQNLPA 476
Query: 325 -------NKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE 377
+ ER R E F G ++ AT G+D NV V+++ +P+ I Y
Sbjct: 477 TSIHGDRTQRERERALEMFRTGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHR 536
Query: 378 SGRAGRDG 385
GR GR G
Sbjct: 537 IGRTGRAG 544
>sp|Q5HPW4|RECG_STAEQ ATP-dependent DNA helicase RecG OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=recG PE=3 SV=1
Length = 682
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 104/241 (43%), Gaps = 17/241 (7%)
Query: 181 HYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQ---FTGNSIP-IIALTA 236
H L+Q V +N + ++ DE H +G + R R G + T IP +A++
Sbjct: 370 HALIQDDVVFNNVGLVITDEQH---RFGVNQRQILREKGAMTNVLFMTATPIPRTLAISV 426
Query: 237 TAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIF---DDLLKDSYAHVK-EFIEKC 292
E D+ S+ + K K KTS + + V+ ++L K A+V IE
Sbjct: 427 FGE----MDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPLIESS 482
Query: 293 LGKDNKANNCGIIYCRTREHTTDLADALRRKVNKHERSRVQESFMRGEINVITATISFGM 352
++ N + ++ + L K+ ++ +V + F EI+++ +T +
Sbjct: 483 EHLEDVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVSTTVVEV 542
Query: 353 GIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLE-YVIKTDT 410
G++ N F++ + + +Q GR GR QSYC + S ++ +E I T T
Sbjct: 543 GVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPKTETGIERMTIMTQT 602
Query: 411 S 411
+
Sbjct: 603 T 603
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,350,967
Number of Sequences: 539616
Number of extensions: 6645614
Number of successful extensions: 18303
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 149
Number of HSP's that attempted gapping in prelim test: 17234
Number of HSP's gapped (non-prelim): 1043
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)