Query psy7952
Match_columns 444
No_of_seqs 165 out of 1757
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 23:00:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03137 ATP-dependent DNA hel 100.0 5.1E-54 1.1E-58 440.1 36.4 382 25-440 436-853 (1195)
2 KOG0352|consensus 100.0 7.4E-55 1.6E-59 394.3 24.6 379 32-434 3-405 (641)
3 COG0514 RecQ Superfamily II DN 100.0 5.5E-53 1.2E-57 410.1 31.7 369 35-444 4-392 (590)
4 TIGR00614 recQ_fam ATP-depende 100.0 5.1E-51 1.1E-55 404.9 35.9 336 39-412 2-348 (470)
5 KOG0331|consensus 100.0 7.9E-52 1.7E-56 394.8 25.1 337 33-407 99-458 (519)
6 PRK11057 ATP-dependent DNA hel 100.0 1.5E-50 3.2E-55 411.6 36.1 368 33-444 10-397 (607)
7 TIGR01389 recQ ATP-dependent D 100.0 2.1E-50 4.5E-55 411.9 35.5 354 37-433 2-366 (591)
8 KOG0330|consensus 100.0 2.9E-51 6.2E-56 367.4 20.7 333 33-406 69-416 (476)
9 KOG0328|consensus 100.0 1.6E-49 3.5E-54 341.7 26.4 335 33-407 35-383 (400)
10 PTZ00110 helicase; Provisional 100.0 7.9E-49 1.7E-53 393.7 28.1 338 33-407 138-494 (545)
11 PRK11776 ATP-dependent RNA hel 100.0 1.6E-48 3.4E-53 387.7 28.8 337 33-407 12-359 (460)
12 PRK04837 ATP-dependent RNA hel 100.0 6.2E-49 1.3E-53 386.5 25.5 332 33-405 16-370 (423)
13 PRK10590 ATP-dependent RNA hel 100.0 3E-48 6.5E-53 384.0 28.1 335 33-406 9-361 (456)
14 COG0513 SrmB Superfamily II DN 100.0 2.6E-48 5.6E-53 386.3 27.1 339 32-407 36-391 (513)
15 PLN00206 DEAD-box ATP-dependen 100.0 3.9E-48 8.3E-53 387.7 28.0 337 33-407 129-485 (518)
16 PRK11634 ATP-dependent RNA hel 100.0 5.4E-48 1.2E-52 390.8 28.5 340 32-407 13-362 (629)
17 PRK11192 ATP-dependent RNA hel 100.0 1.2E-47 2.5E-52 379.2 28.1 335 33-406 9-361 (434)
18 PRK04537 ATP-dependent RNA hel 100.0 2.6E-47 5.7E-52 383.9 28.0 333 33-406 17-373 (572)
19 PTZ00424 helicase 45; Provisio 100.0 3.7E-47 8E-52 372.9 28.0 367 1-406 1-383 (401)
20 PRK01297 ATP-dependent RNA hel 100.0 5.6E-47 1.2E-51 377.5 27.7 335 33-405 95-450 (475)
21 KOG0338|consensus 100.0 2E-47 4.4E-52 353.0 19.3 337 33-409 189-545 (691)
22 KOG0333|consensus 100.0 1.3E-45 2.9E-50 342.2 27.4 360 17-407 238-634 (673)
23 TIGR03817 DECH_helic helicase/ 100.0 2.9E-45 6.3E-50 378.0 30.9 332 33-396 22-385 (742)
24 KOG0351|consensus 100.0 5E-45 1.1E-49 374.3 32.4 369 32-434 248-629 (941)
25 KOG0336|consensus 100.0 1.2E-45 2.7E-50 332.7 24.0 337 33-407 228-582 (629)
26 KOG0340|consensus 100.0 2.3E-45 5.1E-50 325.6 22.7 339 33-407 15-371 (442)
27 KOG0342|consensus 100.0 3.8E-45 8.1E-50 337.6 22.6 343 33-411 90-451 (543)
28 KOG0353|consensus 100.0 2.2E-44 4.8E-49 322.1 26.3 386 8-432 53-494 (695)
29 KOG0345|consensus 100.0 1.4E-44 3E-49 331.7 25.4 336 33-405 14-372 (567)
30 KOG0335|consensus 100.0 8.1E-45 1.7E-49 340.9 21.2 345 33-407 82-454 (482)
31 KOG0326|consensus 100.0 8.3E-45 1.8E-49 317.7 19.8 331 45-418 104-449 (459)
32 KOG0348|consensus 100.0 2.4E-43 5.2E-48 327.8 19.9 345 33-409 144-566 (708)
33 KOG0347|consensus 100.0 7E-43 1.5E-47 325.7 23.0 348 23-408 180-581 (731)
34 KOG0343|consensus 100.0 1.2E-42 2.6E-47 324.2 22.2 340 33-413 77-439 (758)
35 KOG0346|consensus 100.0 1.2E-41 2.6E-46 309.7 21.9 339 31-406 25-422 (569)
36 KOG4284|consensus 100.0 1.8E-41 3.8E-46 321.4 23.8 334 33-399 33-381 (980)
37 TIGR00580 mfd transcription-re 100.0 3.3E-40 7.2E-45 343.5 28.9 351 33-434 437-816 (926)
38 KOG0332|consensus 100.0 4.8E-41 1.1E-45 300.0 19.0 346 17-399 82-445 (477)
39 KOG0341|consensus 100.0 4.7E-42 1E-46 307.7 9.9 330 33-398 178-529 (610)
40 PRK10917 ATP-dependent DNA hel 100.0 1.5E-39 3.3E-44 334.4 29.2 352 34-435 248-631 (681)
41 PRK13767 ATP-dependent helicas 100.0 1.4E-39 2.9E-44 342.5 27.9 322 33-393 19-394 (876)
42 KOG0339|consensus 100.0 1.1E-39 2.3E-44 301.6 22.9 336 33-407 231-585 (731)
43 PRK02362 ski2-like helicase; P 100.0 1.1E-39 2.3E-44 340.3 24.0 318 33-397 9-397 (737)
44 TIGR00643 recG ATP-dependent D 100.0 1.4E-38 3.1E-43 325.3 29.0 352 35-435 223-608 (630)
45 KOG0350|consensus 100.0 4.9E-39 1.1E-43 297.1 21.7 340 38-409 150-552 (620)
46 COG1111 MPH1 ERCC4-like helica 100.0 3.3E-38 7.1E-43 294.0 26.3 310 52-400 18-484 (542)
47 KOG0327|consensus 100.0 3.6E-39 7.9E-44 290.3 17.3 332 33-406 34-379 (397)
48 PRK10689 transcription-repair 100.0 1.2E-37 2.7E-42 331.0 30.7 351 33-434 586-965 (1147)
49 COG1201 Lhr Lhr-like helicases 100.0 6.5E-38 1.4E-42 315.8 25.3 323 31-396 7-361 (814)
50 PRK00254 ski2-like helicase; P 100.0 2.9E-38 6.3E-43 328.7 23.4 324 33-405 9-397 (720)
51 KOG0334|consensus 100.0 1.9E-37 4.1E-42 311.0 22.9 336 34-407 374-730 (997)
52 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.2E-36 4.8E-41 306.4 28.2 329 34-395 2-389 (844)
53 KOG0329|consensus 100.0 4.9E-38 1.1E-42 267.2 11.3 322 18-400 35-358 (387)
54 PRK01172 ski2-like helicase; P 100.0 9E-37 1.9E-41 316.3 23.0 356 33-437 9-434 (674)
55 KOG0952|consensus 100.0 5E-36 1.1E-40 298.5 25.9 374 33-439 94-545 (1230)
56 PRK09751 putative ATP-dependen 100.0 1.7E-36 3.8E-41 323.8 22.7 291 70-393 1-381 (1490)
57 KOG0344|consensus 100.0 5.7E-37 1.2E-41 290.0 14.9 343 33-407 144-505 (593)
58 COG1204 Superfamily II helicas 100.0 8.9E-36 1.9E-40 304.4 20.1 319 33-394 17-405 (766)
59 PRK14701 reverse gyrase; Provi 100.0 1.5E-34 3.2E-39 314.4 26.2 337 33-408 65-467 (1638)
60 KOG0337|consensus 100.0 6E-36 1.3E-40 271.3 11.9 336 31-405 28-376 (529)
61 COG1205 Distinct helicase fami 100.0 2E-34 4.4E-39 298.5 24.3 338 31-398 54-423 (851)
62 KOG0354|consensus 100.0 2.9E-34 6.4E-39 282.7 22.3 311 48-397 62-529 (746)
63 PHA02653 RNA helicase NPH-II; 100.0 3.8E-33 8.2E-38 281.5 26.3 320 45-399 160-516 (675)
64 PHA02558 uvsW UvsW helicase; P 100.0 2.8E-33 6.2E-38 279.4 23.9 298 50-395 115-450 (501)
65 COG1200 RecG RecG-like helicas 100.0 7.2E-33 1.6E-37 269.1 24.1 356 34-439 249-637 (677)
66 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-32 2.5E-37 284.5 24.4 303 53-404 6-343 (819)
67 PRK11664 ATP-dependent RNA hel 100.0 6.6E-33 1.4E-37 286.9 22.6 300 55-401 11-343 (812)
68 PRK09401 reverse gyrase; Revie 100.0 2.2E-32 4.9E-37 291.6 24.8 306 34-383 67-430 (1176)
69 TIGR01587 cas3_core CRISPR-ass 100.0 5.8E-33 1.2E-37 268.1 17.8 299 67-398 1-337 (358)
70 TIGR03158 cas3_cyano CRISPR-as 100.0 9.4E-32 2E-36 257.0 23.8 292 53-382 1-357 (357)
71 PRK12898 secA preprotein trans 100.0 1.1E-31 2.3E-36 266.9 22.9 320 37-399 93-588 (656)
72 COG1202 Superfamily II helicas 100.0 1.2E-31 2.6E-36 252.2 20.5 328 33-397 202-553 (830)
73 TIGR00603 rad25 DNA repair hel 100.0 1.3E-31 2.7E-36 269.3 22.0 309 52-400 258-610 (732)
74 PRK13766 Hef nuclease; Provisi 100.0 6E-31 1.3E-35 277.9 28.3 313 51-401 17-483 (773)
75 COG1197 Mfd Transcription-repa 100.0 8.5E-31 1.8E-35 268.2 26.2 314 33-397 580-913 (1139)
76 PRK09200 preprotein translocas 100.0 9E-31 2E-35 265.7 22.5 319 36-399 67-543 (790)
77 KOG0951|consensus 100.0 4.2E-30 9.1E-35 259.5 22.8 368 44-438 305-754 (1674)
78 TIGR00963 secA preprotein tran 100.0 2.4E-30 5.2E-35 258.5 20.9 321 36-399 45-519 (745)
79 COG1061 SSL2 DNA or RNA helica 100.0 9.1E-30 2E-34 249.3 21.0 286 50-383 37-375 (442)
80 TIGR03714 secA2 accessory Sec 100.0 9.5E-30 2.1E-34 255.8 21.0 323 36-399 59-539 (762)
81 TIGR01054 rgy reverse gyrase. 100.0 1.3E-29 2.9E-34 270.8 23.5 296 34-369 65-409 (1171)
82 PRK05580 primosome assembly pr 100.0 2.1E-29 4.6E-34 258.4 23.3 315 50-408 145-560 (679)
83 PRK11131 ATP-dependent RNA hel 100.0 4.6E-28 1E-32 255.3 22.6 294 55-402 80-416 (1294)
84 TIGR00595 priA primosomal prot 100.0 2.4E-27 5.2E-32 234.9 21.5 294 69-406 1-390 (505)
85 PRK09694 helicase Cas3; Provis 100.0 5.5E-27 1.2E-31 242.4 23.5 306 50-386 287-664 (878)
86 PRK04914 ATP-dependent helicas 100.0 7.8E-27 1.7E-31 242.7 23.9 329 51-410 154-619 (956)
87 TIGR01967 DEAH_box_HrpA ATP-de 99.9 6.9E-27 1.5E-31 247.3 20.9 297 56-402 74-409 (1283)
88 COG4098 comFA Superfamily II D 99.9 2E-26 4.3E-31 204.8 19.9 308 45-400 93-419 (441)
89 PRK11448 hsdR type I restricti 99.9 3.8E-27 8.3E-32 250.3 18.4 302 51-385 415-801 (1123)
90 KOG0947|consensus 99.9 2.2E-26 4.7E-31 227.7 21.2 315 43-407 293-735 (1248)
91 COG4581 Superfamily II RNA hel 99.9 8.8E-26 1.9E-30 231.5 21.2 321 43-411 115-553 (1041)
92 KOG0950|consensus 99.9 3.2E-25 7E-30 220.8 18.8 328 44-416 219-630 (1008)
93 KOG0349|consensus 99.9 1.8E-25 3.9E-30 204.0 12.8 277 106-401 287-619 (725)
94 KOG0948|consensus 99.9 2.5E-25 5.5E-30 215.2 13.0 315 51-415 131-558 (1041)
95 PRK12904 preprotein translocas 99.9 3.6E-24 7.8E-29 217.1 20.2 322 36-399 70-575 (830)
96 COG4096 HsdR Type I site-speci 99.9 1.8E-24 3.9E-29 213.4 14.8 305 51-396 167-544 (875)
97 PRK12906 secA preprotein trans 99.9 2.6E-23 5.6E-28 210.1 22.4 325 35-399 68-555 (796)
98 PRK13104 secA preprotein trans 99.9 7.5E-23 1.6E-27 207.8 23.3 324 37-399 72-589 (896)
99 COG1110 Reverse gyrase [DNA re 99.9 1.2E-22 2.6E-27 203.7 19.7 293 33-368 68-416 (1187)
100 cd00268 DEADc DEAD-box helicas 99.9 1.9E-23 4.1E-28 185.3 12.6 188 33-250 7-196 (203)
101 PLN03142 Probable chromatin-re 99.9 1.1E-21 2.4E-26 205.2 21.3 310 49-392 170-592 (1033)
102 COG1198 PriA Primosomal protei 99.9 2.8E-22 6E-27 201.7 14.9 322 51-412 200-618 (730)
103 KOG0949|consensus 99.9 3.9E-22 8.5E-27 198.1 15.4 88 324-412 972-1061(1330)
104 COG1203 CRISPR-associated heli 99.9 1E-21 2.3E-26 203.7 18.9 327 51-400 197-553 (733)
105 PRK12899 secA preprotein trans 99.9 4.5E-21 9.7E-26 194.6 22.1 133 45-206 86-229 (970)
106 PF00270 DEAD: DEAD/DEAH box h 99.9 7.3E-23 1.6E-27 176.1 7.8 162 51-241 1-165 (169)
107 KOG0922|consensus 99.9 1E-20 2.2E-25 182.9 22.8 295 53-400 55-393 (674)
108 PRK13107 preprotein translocas 99.9 5.7E-21 1.2E-25 193.6 21.6 324 37-399 72-593 (908)
109 COG1643 HrpA HrpA-like helicas 99.9 3.4E-21 7.4E-26 196.7 20.2 300 52-400 53-390 (845)
110 TIGR00348 hsdR type I site-spe 99.9 6.4E-21 1.4E-25 195.9 18.7 314 31-383 212-633 (667)
111 TIGR01407 dinG_rel DnaQ family 99.8 3.6E-19 7.8E-24 188.6 25.5 180 229-412 596-830 (850)
112 KOG4150|consensus 99.8 1.7E-19 3.6E-24 170.3 19.2 323 47-398 285-641 (1034)
113 KOG1123|consensus 99.8 1.4E-18 3.1E-23 161.9 21.5 300 51-400 304-656 (776)
114 KOG0926|consensus 99.8 3.4E-19 7.4E-24 174.2 17.8 300 56-400 263-707 (1172)
115 PRK12900 secA preprotein trans 99.8 1.9E-18 4.1E-23 176.2 21.4 102 298-399 596-713 (1025)
116 PRK12326 preprotein translocas 99.8 2.1E-18 4.5E-23 171.2 21.1 317 36-399 67-549 (764)
117 KOG0924|consensus 99.8 2.2E-18 4.9E-23 165.9 20.6 295 52-397 359-697 (1042)
118 KOG0923|consensus 99.8 1.5E-18 3.3E-23 166.6 18.7 296 53-399 269-608 (902)
119 KOG0920|consensus 99.8 2.4E-18 5.3E-23 175.3 17.4 308 49-401 172-548 (924)
120 PRK07246 bifunctional ATP-depe 99.8 1.4E-17 3.1E-22 174.2 23.2 178 229-412 574-799 (820)
121 KOG0385|consensus 99.8 9.9E-18 2.1E-22 163.6 16.5 312 49-393 168-593 (971)
122 PRK13103 secA preprotein trans 99.8 1.5E-16 3.2E-21 161.9 23.7 133 37-205 72-215 (913)
123 COG4889 Predicted helicase [Ge 99.8 4.2E-18 9.1E-23 168.0 11.7 337 18-392 134-583 (1518)
124 KOG0387|consensus 99.7 8.6E-17 1.9E-21 157.9 15.7 316 52-400 208-661 (923)
125 PRK08074 bifunctional ATP-depe 99.7 1.6E-15 3.5E-20 161.6 25.5 180 230-412 674-909 (928)
126 PRK12903 secA preprotein trans 99.7 2.1E-15 4.6E-20 152.1 24.7 318 36-399 67-541 (925)
127 KOG0384|consensus 99.7 3.7E-17 8.1E-22 166.9 11.6 320 47-399 369-813 (1373)
128 TIGR00631 uvrb excinuclease AB 99.7 4.2E-16 9E-21 158.7 18.9 122 281-407 427-563 (655)
129 KOG0925|consensus 99.7 3.3E-15 7.1E-20 139.3 20.7 311 33-398 33-388 (699)
130 TIGR03117 cas_csf4 CRISPR-asso 99.7 2.2E-15 4.8E-20 151.1 20.8 178 230-410 373-629 (636)
131 CHL00122 secA preprotein trans 99.7 1.6E-15 3.4E-20 153.9 17.7 133 36-204 65-208 (870)
132 COG0556 UvrB Helicase subunit 99.7 8.4E-15 1.8E-19 138.4 21.2 156 229-397 387-557 (663)
133 KOG0951|consensus 99.7 6.8E-16 1.5E-20 157.7 14.8 341 51-438 1145-1547(1674)
134 KOG0389|consensus 99.6 2.8E-15 6.1E-20 147.2 15.0 171 52-251 402-575 (941)
135 KOG0390|consensus 99.6 2.3E-14 4.9E-19 144.2 21.5 313 52-393 241-701 (776)
136 cd00079 HELICc Helicase superf 99.6 1.8E-15 4E-20 123.9 11.5 110 280-393 12-131 (131)
137 PRK05298 excinuclease ABC subu 99.6 1.4E-14 3E-19 148.8 20.3 111 282-397 432-557 (652)
138 KOG0953|consensus 99.6 8.5E-15 1.8E-19 138.7 14.5 273 66-412 192-491 (700)
139 smart00487 DEXDc DEAD-like hel 99.6 5E-15 1.1E-19 130.4 12.3 176 44-250 4-182 (201)
140 TIGR00604 rad3 DNA repair heli 99.6 1.6E-13 3.5E-18 143.0 23.3 162 231-397 444-674 (705)
141 PRK12902 secA preprotein trans 99.6 3.7E-13 8E-18 136.6 23.5 133 36-204 74-217 (939)
142 PRK11747 dinG ATP-dependent DN 99.6 4.6E-13 9.9E-18 138.6 24.9 177 231-411 459-689 (697)
143 COG1199 DinG Rad3-related DNA 99.6 3.3E-13 7.2E-18 140.6 21.5 180 230-412 405-633 (654)
144 PRK14873 primosome assembly pr 99.5 6.4E-14 1.4E-18 142.5 14.7 296 69-409 164-550 (665)
145 KOG1000|consensus 99.5 2.4E-14 5.1E-19 133.9 10.3 302 52-394 201-598 (689)
146 PF00271 Helicase_C: Helicase 99.5 1.4E-14 3.1E-19 107.0 6.8 62 324-385 17-78 (78)
147 cd00046 DEXDc DEAD-like helica 99.5 7.6E-14 1.6E-18 115.6 8.0 143 66-238 1-144 (144)
148 PF04851 ResIII: Type III rest 99.5 6.7E-14 1.5E-18 121.8 7.9 154 52-240 6-184 (184)
149 TIGR02562 cas3_yersinia CRISPR 99.5 1.5E-12 3.3E-17 134.2 18.2 82 303-387 759-882 (1110)
150 KOG0392|consensus 99.5 1.3E-12 2.8E-17 134.0 15.6 92 299-390 1339-1445(1549)
151 PRK12901 secA preprotein trans 99.4 1.5E-11 3.2E-16 126.5 20.2 114 281-399 613-743 (1112)
152 KOG0386|consensus 99.4 1.7E-12 3.6E-17 131.0 10.2 315 48-395 394-834 (1157)
153 smart00490 HELICc helicase sup 99.3 3.5E-12 7.6E-17 95.0 7.9 62 324-385 21-82 (82)
154 COG0610 Type I site-specific r 99.3 1E-10 2.2E-15 124.5 20.0 289 66-395 274-651 (962)
155 PF02399 Herpes_ori_bp: Origin 99.2 1.3E-10 2.8E-15 117.2 14.7 288 66-397 50-388 (824)
156 PF07652 Flavi_DEAD: Flaviviru 99.2 1E-11 2.2E-16 99.5 3.8 134 66-242 5-140 (148)
157 KOG0388|consensus 99.2 3E-10 6.5E-15 111.0 13.4 93 297-389 1041-1144(1185)
158 KOG1002|consensus 99.1 5.4E-10 1.2E-14 105.1 12.3 108 299-406 637-759 (791)
159 KOG0391|consensus 99.1 9.4E-10 2E-14 112.6 13.9 169 52-252 618-789 (1958)
160 KOG4439|consensus 99.1 6.1E-10 1.3E-14 108.9 11.5 69 324-392 780-851 (901)
161 PF00176 SNF2_N: SNF2 family N 99.0 2E-10 4.3E-15 108.2 3.6 170 53-251 1-185 (299)
162 COG0653 SecA Preprotein transl 99.0 1.2E-08 2.6E-13 104.0 16.0 138 34-204 67-212 (822)
163 smart00489 DEXDc3 DEAD-like he 98.8 1.2E-08 2.6E-13 94.7 7.1 63 44-118 5-74 (289)
164 smart00488 DEXDc2 DEAD-like he 98.8 1.2E-08 2.6E-13 94.7 7.1 63 44-118 5-74 (289)
165 KOG1015|consensus 98.8 1.3E-07 2.8E-12 95.7 14.2 69 324-392 1198-1270(1567)
166 PF06862 DUF1253: Protein of u 98.8 2.7E-06 6E-11 82.0 22.5 235 163-408 130-426 (442)
167 TIGR00596 rad1 DNA repair prot 98.6 2.1E-06 4.5E-11 89.7 18.0 69 163-240 6-74 (814)
168 COG0553 HepA Superfamily II DN 98.6 5.2E-07 1.1E-11 97.9 12.4 95 299-393 708-816 (866)
169 PF07517 SecA_DEAD: SecA DEAD- 98.5 1.2E-07 2.5E-12 85.9 5.3 133 37-205 67-210 (266)
170 KOG0952|consensus 98.5 2E-08 4.4E-13 102.7 -0.4 227 52-320 930-1173(1230)
171 PF13086 AAA_11: AAA domain; P 98.4 2.5E-07 5.5E-12 83.6 4.7 64 51-130 3-73 (236)
172 PF13307 Helicase_C_2: Helicas 98.4 2.4E-06 5.3E-11 72.7 9.0 99 299-397 8-150 (167)
173 PRK15483 type III restriction- 98.2 7.7E-06 1.7E-10 85.8 10.4 45 340-384 501-545 (986)
174 PF02562 PhoH: PhoH-like prote 98.1 2.5E-06 5.4E-11 74.1 4.5 57 50-117 5-61 (205)
175 KOG0921|consensus 98.1 5.9E-06 1.3E-10 83.7 7.5 98 299-397 642-774 (1282)
176 KOG1016|consensus 98.1 0.00042 9E-09 69.7 19.3 96 299-394 718-844 (1387)
177 PF13872 AAA_34: P-loop contai 98.0 2.2E-05 4.7E-10 71.5 8.0 165 51-242 39-224 (303)
178 KOG1803|consensus 98.0 1.2E-05 2.6E-10 78.7 6.3 63 51-130 187-249 (649)
179 KOG1513|consensus 98.0 0.00031 6.7E-09 70.8 15.8 74 333-406 850-934 (1300)
180 KOG1802|consensus 97.9 2.7E-05 5.9E-10 76.7 7.2 80 45-145 407-487 (935)
181 PRK10875 recD exonuclease V su 97.9 4.4E-05 9.6E-10 77.8 8.6 84 31-130 134-219 (615)
182 TIGR01447 recD exodeoxyribonuc 97.8 4.4E-05 9.6E-10 77.7 6.7 56 52-118 148-206 (586)
183 TIGR00376 DNA helicase, putati 97.7 5E-05 1.1E-09 78.3 6.5 63 51-130 159-221 (637)
184 KOG2340|consensus 97.7 0.0011 2.5E-08 64.0 14.4 108 300-407 552-678 (698)
185 PRK10536 hypothetical protein; 97.7 0.00017 3.6E-09 64.7 8.3 61 45-117 56-116 (262)
186 PF13604 AAA_30: AAA domain; P 97.7 5.9E-05 1.3E-09 66.0 5.3 56 51-118 3-59 (196)
187 COG3587 Restriction endonuclea 97.6 0.00087 1.9E-08 68.4 13.3 47 338-384 481-527 (985)
188 COG1875 NYN ribonuclease and A 97.6 8.6E-05 1.9E-09 68.6 5.4 70 39-118 219-289 (436)
189 TIGR01448 recD_rel helicase, p 97.6 0.00019 4.1E-09 75.3 7.8 67 39-118 315-381 (720)
190 COG3421 Uncharacterized protei 97.4 0.00086 1.9E-08 65.8 9.5 58 327-384 315-384 (812)
191 PF13245 AAA_19: Part of AAA d 97.4 5.5E-05 1.2E-09 54.8 1.1 60 57-130 2-62 (76)
192 KOG1805|consensus 97.3 0.00034 7.3E-09 72.2 6.1 127 52-206 672-810 (1100)
193 smart00492 HELICc3 helicase su 97.3 0.0021 4.5E-08 52.8 9.4 68 329-396 36-137 (141)
194 PRK08181 transposase; Validate 97.3 0.00087 1.9E-08 61.4 7.9 30 52-81 90-122 (269)
195 PF00448 SRP54: SRP54-type pro 97.2 0.00092 2E-08 58.3 7.1 57 190-250 81-137 (196)
196 PRK06526 transposase; Provisio 97.1 0.00052 1.1E-08 62.5 4.7 17 65-81 98-114 (254)
197 PRK12723 flagellar biosynthesi 97.1 0.0034 7.5E-08 60.5 10.2 57 189-249 251-308 (388)
198 PF09848 DUF2075: Uncharacteri 97.0 0.00039 8.4E-09 66.9 2.0 43 66-118 2-44 (352)
199 smart00491 HELICc2 helicase su 97.0 0.0028 6.1E-08 52.1 6.9 67 330-396 34-138 (142)
200 KOG1132|consensus 96.8 0.0014 3E-08 67.3 4.9 45 41-87 15-62 (945)
201 KOG1133|consensus 96.8 0.025 5.5E-07 56.8 13.4 114 280-396 612-779 (821)
202 PF13871 Helicase_C_4: Helicas 96.8 0.0053 1.1E-07 55.9 7.5 57 331-387 52-116 (278)
203 TIGR02768 TraA_Ti Ti-type conj 96.7 0.0027 5.9E-08 67.0 6.2 72 31-118 338-409 (744)
204 PRK12377 putative replication 96.7 0.0038 8.2E-08 56.5 6.3 40 66-118 102-141 (248)
205 KOG0989|consensus 96.7 0.002 4.3E-08 58.5 4.3 41 192-238 129-169 (346)
206 PRK08727 hypothetical protein; 96.7 0.0035 7.6E-08 56.5 5.9 16 66-81 42-57 (233)
207 PF12340 DUF3638: Protein of u 96.7 0.0063 1.4E-07 53.6 7.2 111 49-177 24-143 (229)
208 PRK11889 flhF flagellar biosyn 96.6 0.05 1.1E-06 52.2 13.1 55 192-250 320-374 (436)
209 COG1419 FlhF Flagellar GTP-bin 96.6 0.015 3.3E-07 55.4 9.6 64 184-251 273-336 (407)
210 PRK13889 conjugal transfer rel 96.5 0.0058 1.3E-07 65.7 6.9 74 31-118 328-403 (988)
211 PF13401 AAA_22: AAA domain; P 96.4 0.0057 1.2E-07 49.5 5.3 16 66-81 5-20 (131)
212 PF05970 PIF1: PIF1-like helic 96.4 0.0023 4.9E-08 61.9 3.0 55 51-118 3-63 (364)
213 PF00580 UvrD-helicase: UvrD/R 96.3 0.0014 3.1E-08 61.8 0.8 63 51-130 2-65 (315)
214 PRK06921 hypothetical protein; 96.2 0.013 2.8E-07 53.9 6.8 16 66-81 118-133 (266)
215 KOG2028|consensus 96.2 0.0058 1.3E-07 56.8 4.3 42 38-81 135-178 (554)
216 PRK07952 DNA replication prote 96.2 0.011 2.4E-07 53.3 6.1 30 52-81 79-115 (244)
217 COG1484 DnaC DNA replication p 96.2 0.004 8.6E-08 56.8 3.3 54 52-118 86-145 (254)
218 PRK05642 DNA replication initi 96.2 0.0083 1.8E-07 54.1 5.3 16 66-81 46-61 (234)
219 PRK14974 cell division protein 96.1 0.055 1.2E-06 51.3 10.6 54 191-248 221-274 (336)
220 PF01695 IstB_IS21: IstB-like 96.1 0.0017 3.7E-08 55.8 0.4 41 65-118 47-87 (178)
221 PRK06835 DNA replication prote 96.1 0.018 3.9E-07 54.5 7.2 40 66-118 184-223 (329)
222 PF00308 Bac_DnaA: Bacterial d 96.1 0.016 3.5E-07 51.6 6.5 49 190-242 95-144 (219)
223 PRK05703 flhF flagellar biosyn 96.1 0.18 3.9E-06 49.7 14.2 58 190-251 297-355 (424)
224 KOG1131|consensus 96.0 0.025 5.5E-07 55.0 7.9 96 300-396 530-679 (755)
225 PRK08084 DNA replication initi 96.0 0.036 7.9E-07 50.0 8.7 16 66-81 46-61 (235)
226 cd00009 AAA The AAA+ (ATPases 96.0 0.015 3.3E-07 47.6 5.9 16 66-81 20-35 (151)
227 PRK12323 DNA polymerase III su 96.0 0.014 3E-07 59.4 6.4 41 191-237 123-163 (700)
228 PRK05707 DNA polymerase III su 96.0 0.015 3.3E-07 55.1 6.4 31 52-82 6-39 (328)
229 PRK14722 flhF flagellar biosyn 96.0 0.099 2.1E-06 50.2 11.7 55 189-247 212-266 (374)
230 PRK04296 thymidine kinase; Pro 96.0 0.0064 1.4E-07 52.9 3.4 15 67-81 4-18 (190)
231 PRK00149 dnaA chromosomal repl 96.0 0.016 3.5E-07 57.8 6.7 16 66-81 149-164 (450)
232 PRK12422 chromosomal replicati 95.9 0.014 3.1E-07 57.7 5.9 16 66-81 142-157 (445)
233 PRK14087 dnaA chromosomal repl 95.9 0.015 3.2E-07 57.7 6.0 16 66-81 142-157 (450)
234 KOG0739|consensus 95.9 0.029 6.2E-07 50.9 7.0 57 189-245 222-284 (439)
235 PRK14088 dnaA chromosomal repl 95.8 0.02 4.3E-07 56.8 6.6 16 66-81 131-146 (440)
236 PRK07003 DNA polymerase III su 95.8 0.034 7.3E-07 57.6 8.2 39 191-235 118-156 (830)
237 PF05621 TniB: Bacterial TniB 95.8 0.031 6.7E-07 51.4 7.2 49 186-237 139-188 (302)
238 cd01124 KaiC KaiC is a circadi 95.8 0.012 2.5E-07 51.0 4.4 18 189-206 92-109 (187)
239 TIGR03015 pepcterm_ATPase puta 95.7 0.083 1.8E-06 48.7 10.1 33 49-81 23-59 (269)
240 PRK08116 hypothetical protein; 95.7 0.023 4.9E-07 52.3 6.1 16 66-81 115-130 (268)
241 PRK06893 DNA replication initi 95.7 0.015 3.2E-07 52.3 4.8 49 191-243 90-139 (229)
242 TIGR02881 spore_V_K stage V sp 95.7 0.037 8E-07 50.8 7.5 17 66-82 43-59 (261)
243 PRK09183 transposase/IS protei 95.7 0.041 8.8E-07 50.4 7.7 19 62-81 100-118 (259)
244 KOG1001|consensus 95.7 0.021 4.6E-07 58.9 6.1 69 324-392 573-643 (674)
245 KOG0742|consensus 95.7 0.036 7.9E-07 52.5 7.0 16 66-81 385-400 (630)
246 TIGR00362 DnaA chromosomal rep 95.6 0.018 4E-07 56.6 5.3 16 66-81 137-152 (405)
247 PRK14958 DNA polymerase III su 95.6 0.089 1.9E-06 53.1 10.1 39 191-235 118-156 (509)
248 PRK14949 DNA polymerase III su 95.5 0.058 1.3E-06 57.0 8.8 38 191-234 118-155 (944)
249 PRK00411 cdc6 cell division co 95.5 0.088 1.9E-06 51.6 9.7 16 66-81 56-71 (394)
250 TIGR02928 orc1/cdc6 family rep 95.4 0.067 1.5E-06 51.8 8.6 16 66-81 41-56 (365)
251 PRK09111 DNA polymerase III su 95.4 0.061 1.3E-06 55.2 8.5 40 190-235 130-169 (598)
252 TIGR02760 TraI_TIGR conjugativ 95.3 0.14 3E-06 59.9 11.9 56 51-118 431-487 (1960)
253 COG2256 MGS1 ATPase related to 95.3 0.067 1.4E-06 50.8 7.6 26 56-81 37-64 (436)
254 PRK13826 Dtr system oriT relax 95.3 0.026 5.6E-07 61.3 5.4 56 51-118 383-438 (1102)
255 PRK14960 DNA polymerase III su 95.2 0.083 1.8E-06 54.1 8.6 39 191-235 117-155 (702)
256 PRK14964 DNA polymerase III su 95.2 0.099 2.1E-06 52.1 9.0 39 191-235 115-153 (491)
257 PRK14086 dnaA chromosomal repl 95.2 0.032 7E-07 56.7 5.6 16 66-81 315-330 (617)
258 cd00984 DnaB_C DnaB helicase C 95.2 0.049 1.1E-06 49.3 6.4 18 63-81 12-29 (242)
259 PRK07764 DNA polymerase III su 95.2 0.12 2.6E-06 55.0 10.0 39 191-235 119-157 (824)
260 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.042 9.1E-07 49.2 5.9 16 66-81 39-54 (226)
261 PF13177 DNA_pol3_delta2: DNA 95.2 0.031 6.8E-07 47.2 4.7 43 191-239 101-143 (162)
262 PF05496 RuvB_N: Holliday junc 95.1 0.021 4.6E-07 50.1 3.5 16 66-81 51-66 (233)
263 PF00004 AAA: ATPase family as 95.1 0.2 4.3E-06 40.2 9.2 14 68-81 1-14 (132)
264 COG1474 CDC6 Cdc6-related prot 95.0 0.13 2.8E-06 49.6 8.8 28 181-208 112-139 (366)
265 PTZ00112 origin recognition co 95.0 0.15 3.3E-06 53.7 9.6 15 67-81 782-797 (1164)
266 PRK14956 DNA polymerase III su 95.0 0.07 1.5E-06 52.7 7.0 18 67-84 42-59 (484)
267 cd01120 RecA-like_NTPases RecA 95.0 0.094 2E-06 43.8 7.1 20 186-205 79-98 (165)
268 PRK14952 DNA polymerase III su 94.9 0.22 4.8E-06 50.9 10.7 40 190-235 116-155 (584)
269 COG1222 RPT1 ATP-dependent 26S 94.9 0.037 8E-07 51.6 4.5 17 65-81 185-201 (406)
270 KOG0383|consensus 94.9 0.024 5.2E-07 58.1 3.6 61 293-353 624-696 (696)
271 PLN03025 replication factor C 94.8 0.061 1.3E-06 51.0 6.0 38 192-235 99-136 (319)
272 PRK08769 DNA polymerase III su 94.8 0.033 7.2E-07 52.4 4.1 42 191-238 112-153 (319)
273 PRK14969 DNA polymerase III su 94.8 0.13 2.8E-06 52.2 8.7 39 191-235 118-156 (527)
274 PRK07994 DNA polymerase III su 94.8 0.22 4.8E-06 51.4 10.3 39 191-235 118-156 (647)
275 TIGR03600 phage_DnaB phage rep 94.7 0.081 1.8E-06 52.3 7.0 160 57-237 183-353 (421)
276 cd01122 GP4d_helicase GP4d_hel 94.7 0.13 2.7E-06 47.6 7.9 21 60-81 26-46 (271)
277 PRK00771 signal recognition pa 94.7 0.16 3.6E-06 49.9 8.9 16 66-81 96-111 (437)
278 PRK08691 DNA polymerase III su 94.7 0.16 3.5E-06 52.4 8.9 40 190-235 117-156 (709)
279 PRK12726 flagellar biosynthesi 94.7 0.6 1.3E-05 44.8 12.1 16 66-81 207-222 (407)
280 PRK14959 DNA polymerase III su 94.7 0.1 2.2E-06 53.4 7.4 19 66-84 39-57 (624)
281 PRK05595 replicative DNA helic 94.6 0.15 3.3E-06 50.7 8.6 167 48-237 183-360 (444)
282 PRK06731 flhF flagellar biosyn 94.6 1.2 2.7E-05 40.8 13.7 57 190-250 152-208 (270)
283 PRK14957 DNA polymerase III su 94.5 0.23 5E-06 50.3 9.6 40 190-235 117-156 (546)
284 PRK12727 flagellar biosynthesi 94.5 0.31 6.7E-06 48.8 10.1 55 189-248 425-479 (559)
285 PRK08939 primosomal protein Dn 94.5 0.1 2.2E-06 49.0 6.6 16 66-81 157-172 (306)
286 PRK06645 DNA polymerase III su 94.4 0.13 2.7E-06 51.7 7.5 19 66-84 44-62 (507)
287 PRK06904 replicative DNA helic 94.4 0.16 3.4E-06 50.8 8.0 152 66-235 222-381 (472)
288 PRK06964 DNA polymerase III su 94.3 0.051 1.1E-06 51.6 4.2 33 52-84 4-40 (342)
289 PRK07940 DNA polymerase III su 94.3 0.12 2.6E-06 50.3 6.7 41 191-237 116-156 (394)
290 PRK12402 replication factor C 94.2 0.22 4.7E-06 47.6 8.6 29 54-82 23-53 (337)
291 TIGR01075 uvrD DNA helicase II 94.2 0.027 5.8E-07 59.7 2.4 62 51-130 6-69 (715)
292 PRK08903 DnaA regulatory inact 94.1 0.19 4.1E-06 45.0 7.4 29 53-81 27-58 (227)
293 PRK11773 uvrD DNA-dependent he 94.0 0.028 6E-07 59.6 2.0 62 51-130 11-74 (721)
294 KOG0741|consensus 94.0 0.076 1.7E-06 52.1 4.7 50 28-81 222-272 (744)
295 PRK07133 DNA polymerase III su 93.9 0.14 3.1E-06 53.2 6.8 39 191-235 117-155 (725)
296 TIGR00064 ftsY signal recognit 93.9 0.47 1E-05 43.7 9.7 16 66-81 73-88 (272)
297 PRK14951 DNA polymerase III su 93.9 0.17 3.7E-06 52.0 7.2 39 191-235 123-161 (618)
298 PRK09112 DNA polymerase III su 93.9 0.16 3.5E-06 48.6 6.7 42 191-238 140-181 (351)
299 KOG0701|consensus 93.8 0.037 8E-07 61.6 2.6 84 301-384 293-398 (1606)
300 PRK14965 DNA polymerase III su 93.8 0.18 4E-06 51.8 7.5 40 190-235 117-156 (576)
301 COG3972 Superfamily I DNA and 93.8 0.049 1.1E-06 52.8 2.9 159 28-206 144-309 (660)
302 PRK14962 DNA polymerase III su 93.8 0.15 3.3E-06 50.9 6.5 17 67-83 38-54 (472)
303 PRK08760 replicative DNA helic 93.8 0.17 3.6E-06 50.7 6.8 166 49-235 212-386 (476)
304 KOG1133|consensus 93.7 0.034 7.4E-07 56.0 1.9 44 44-88 10-57 (821)
305 TIGR00631 uvrb excinuclease AB 93.7 0.091 2E-06 54.7 5.1 59 50-130 10-74 (655)
306 PRK05748 replicative DNA helic 93.7 0.2 4.4E-06 49.9 7.4 168 48-237 185-364 (448)
307 PF03796 DnaB_C: DnaB-like hel 93.6 0.08 1.7E-06 48.6 4.0 149 66-237 20-179 (259)
308 KOG0734|consensus 93.6 0.18 4E-06 49.6 6.4 53 191-243 395-452 (752)
309 PRK14963 DNA polymerase III su 93.6 0.2 4.3E-06 50.5 7.0 16 68-83 39-54 (504)
310 TIGR01425 SRP54_euk signal rec 93.5 0.4 8.7E-06 46.9 8.8 15 67-81 102-116 (429)
311 PRK11054 helD DNA helicase IV; 93.5 0.034 7.3E-07 58.1 1.5 77 50-144 197-277 (684)
312 PRK14961 DNA polymerase III su 93.5 0.31 6.7E-06 47.1 8.0 39 191-235 118-156 (363)
313 PF05127 Helicase_RecD: Helica 93.5 0.074 1.6E-06 45.2 3.3 39 69-118 1-39 (177)
314 COG1223 Predicted ATPase (AAA+ 93.4 0.23 4.9E-06 44.5 6.2 17 65-81 151-167 (368)
315 PRK14721 flhF flagellar biosyn 93.4 1.3 2.9E-05 43.3 12.1 58 189-250 266-323 (420)
316 TIGR00678 holB DNA polymerase 93.3 0.54 1.2E-05 40.7 8.6 40 190-235 94-133 (188)
317 PRK07993 DNA polymerase III su 93.3 0.084 1.8E-06 50.2 3.7 42 191-238 107-148 (334)
318 PRK11331 5-methylcytosine-spec 93.3 0.44 9.6E-06 46.7 8.6 28 53-81 183-210 (459)
319 PRK06871 DNA polymerase III su 93.3 0.12 2.5E-06 48.8 4.6 42 191-238 106-147 (325)
320 PRK14723 flhF flagellar biosyn 93.3 2.1 4.5E-05 45.1 13.9 16 66-81 186-201 (767)
321 PRK14954 DNA polymerase III su 93.2 0.4 8.7E-06 49.5 8.7 41 189-235 124-164 (620)
322 KOG0744|consensus 93.2 0.16 3.4E-06 46.9 5.1 30 175-204 233-262 (423)
323 COG0552 FtsY Signal recognitio 93.2 0.43 9.3E-06 44.5 8.0 125 67-245 141-276 (340)
324 PRK09376 rho transcription ter 93.2 0.24 5.2E-06 47.6 6.5 19 62-81 167-185 (416)
325 PRK10919 ATP-dependent DNA hel 93.1 0.034 7.4E-07 58.3 0.9 63 51-130 4-67 (672)
326 PRK08506 replicative DNA helic 93.0 0.27 5.8E-06 49.3 7.0 165 48-236 174-350 (472)
327 PRK06090 DNA polymerase III su 93.0 0.1 2.2E-06 49.1 3.7 42 191-238 107-148 (319)
328 TIGR00767 rho transcription te 93.0 0.49 1.1E-05 45.7 8.2 18 63-81 167-184 (415)
329 PRK05973 replicative DNA helic 92.9 0.2 4.3E-06 45.0 5.3 18 66-83 65-82 (237)
330 PRK14948 DNA polymerase III su 92.9 0.14 3E-06 52.9 4.9 19 66-84 39-57 (620)
331 PRK13341 recombination factor 92.9 0.83 1.8E-05 48.2 10.6 25 57-81 42-68 (725)
332 PRK08699 DNA polymerase III su 92.9 0.36 7.9E-06 45.7 7.3 32 52-83 4-39 (325)
333 KOG0738|consensus 92.9 0.19 4.1E-06 47.6 5.1 24 183-206 295-318 (491)
334 PRK07471 DNA polymerase III su 92.9 0.24 5.2E-06 47.7 6.2 42 191-238 140-181 (365)
335 PRK14955 DNA polymerase III su 92.8 0.21 4.5E-06 49.0 5.8 19 66-84 39-57 (397)
336 PRK13894 conjugal transfer ATP 92.8 0.076 1.6E-06 50.1 2.5 30 52-81 135-164 (319)
337 PRK13709 conjugal transfer nic 92.7 0.11 2.4E-06 59.4 4.1 58 51-118 969-1029(1747)
338 PRK05896 DNA polymerase III su 92.7 0.54 1.2E-05 48.0 8.6 19 66-84 39-57 (605)
339 PRK06067 flagellar accessory p 92.7 0.8 1.7E-05 41.2 9.1 25 57-81 13-41 (234)
340 PRK13833 conjugal transfer pro 92.7 0.11 2.3E-06 49.1 3.3 30 52-81 131-160 (323)
341 PRK13342 recombination factor 92.6 0.31 6.7E-06 48.0 6.7 24 58-81 27-52 (413)
342 PRK14712 conjugal transfer nic 92.5 0.086 1.9E-06 59.4 2.9 59 50-118 836-897 (1623)
343 PRK09165 replicative DNA helic 92.5 0.33 7.1E-06 49.0 6.9 168 48-236 199-391 (497)
344 PRK05636 replicative DNA helic 92.5 0.28 6.1E-06 49.4 6.4 163 49-235 248-422 (505)
345 PRK08840 replicative DNA helic 92.5 0.34 7.3E-06 48.4 6.8 166 48-235 199-376 (464)
346 KOG0991|consensus 92.5 0.16 3.5E-06 44.6 3.9 19 63-81 45-64 (333)
347 PRK08006 replicative DNA helic 92.4 0.38 8.3E-06 48.1 7.1 165 49-235 207-383 (471)
348 PHA03368 DNA packaging termina 92.4 0.84 1.8E-05 46.7 9.4 169 33-250 228-402 (738)
349 TIGR02782 TrbB_P P-type conjug 92.4 0.11 2.3E-06 48.7 2.9 30 52-81 119-148 (299)
350 PRK07004 replicative DNA helic 92.3 0.43 9.3E-06 47.6 7.3 164 49-236 196-372 (460)
351 PRK04195 replication factor C 92.3 0.29 6.2E-06 49.4 6.2 16 66-81 40-55 (482)
352 PRK10416 signal recognition pa 92.3 1.4 2.9E-05 41.7 10.3 58 191-249 195-255 (318)
353 PRK08451 DNA polymerase III su 92.3 0.46 1E-05 48.0 7.4 39 191-235 116-154 (535)
354 TIGR03345 VI_ClpV1 type VI sec 92.2 0.26 5.7E-06 53.0 6.1 28 54-81 192-224 (852)
355 PRK12724 flagellar biosynthesi 92.2 4.5 9.7E-05 39.6 13.7 56 191-250 298-356 (432)
356 PRK06321 replicative DNA helic 92.2 0.41 8.8E-06 47.9 7.0 167 48-237 208-388 (472)
357 TIGR00665 DnaB replicative DNA 92.1 0.39 8.4E-06 47.8 6.8 25 57-81 184-211 (434)
358 cd01126 TraG_VirD4 The TraG/Tr 92.1 0.2 4.3E-06 48.9 4.6 38 67-118 1-38 (384)
359 PF03354 Terminase_1: Phage Te 92.0 0.15 3.4E-06 51.2 3.8 59 52-118 1-67 (477)
360 KOG0298|consensus 92.0 0.073 1.6E-06 57.3 1.5 152 66-242 375-554 (1394)
361 TIGR01074 rep ATP-dependent DN 91.9 0.068 1.5E-06 56.3 1.2 63 51-130 3-66 (664)
362 COG2255 RuvB Holliday junction 91.6 0.15 3.4E-06 46.1 2.9 40 40-81 25-68 (332)
363 PRK03992 proteasome-activating 91.6 0.29 6.4E-06 47.7 5.1 16 66-81 166-181 (389)
364 PF06733 DEAD_2: DEAD_2; Inte 91.6 0.11 2.4E-06 44.5 1.9 43 161-206 116-159 (174)
365 PRK05563 DNA polymerase III su 91.5 0.46 1E-05 48.6 6.7 19 66-84 39-57 (559)
366 PF05876 Terminase_GpA: Phage 91.5 0.56 1.2E-05 48.0 7.2 58 50-118 17-75 (557)
367 PRK06995 flhF flagellar biosyn 91.4 3.4 7.4E-05 41.3 12.3 16 66-81 257-272 (484)
368 PRK13897 type IV secretion sys 91.3 0.27 5.8E-06 50.5 4.6 42 63-118 156-197 (606)
369 PF02534 T4SS-DNA_transf: Type 91.2 0.2 4.2E-06 50.4 3.6 39 66-118 45-83 (469)
370 PRK05298 excinuclease ABC subu 91.1 0.27 5.9E-06 51.4 4.6 61 50-130 13-77 (652)
371 PRK06305 DNA polymerase III su 91.0 1.5 3.3E-05 43.6 9.7 39 191-235 120-158 (451)
372 PRK14950 DNA polymerase III su 91.0 1.1 2.4E-05 46.3 8.9 18 66-83 39-56 (585)
373 PF05673 DUF815: Protein of un 90.9 0.46 9.9E-06 42.5 5.2 117 60-203 45-171 (249)
374 PF05707 Zot: Zonular occluden 90.9 0.3 6.6E-06 42.5 4.1 55 192-247 79-134 (193)
375 TIGR01241 FtsH_fam ATP-depende 90.9 0.27 5.8E-06 49.8 4.2 16 66-81 89-104 (495)
376 PRK10867 signal recognition pa 90.8 1.3 2.8E-05 43.6 8.7 15 67-81 102-116 (433)
377 TIGR01073 pcrA ATP-dependent D 90.8 0.084 1.8E-06 56.1 0.6 63 51-130 6-69 (726)
378 PLN00020 ribulose bisphosphate 90.8 0.12 2.7E-06 48.9 1.6 16 66-81 149-164 (413)
379 PHA03333 putative ATPase subun 90.8 2 4.4E-05 44.3 10.1 44 192-243 294-337 (752)
380 TIGR02785 addA_Gpos recombinat 90.8 0.11 2.5E-06 58.3 1.6 63 51-130 3-65 (1232)
381 COG2804 PulE Type II secretory 90.7 0.21 4.5E-06 49.2 3.1 30 52-81 244-274 (500)
382 CHL00176 ftsH cell division pr 90.7 0.52 1.1E-05 48.9 6.2 16 66-81 217-232 (638)
383 cd01130 VirB11-like_ATPase Typ 90.7 0.25 5.3E-06 42.8 3.3 30 52-81 12-41 (186)
384 KOG1132|consensus 90.7 5.4 0.00012 42.0 13.1 70 300-369 561-656 (945)
385 COG1219 ClpX ATP-dependent pro 90.7 0.1 2.3E-06 47.9 0.9 19 66-84 98-116 (408)
386 PRK10865 protein disaggregatio 90.6 0.36 7.7E-06 52.2 5.1 16 66-81 200-215 (857)
387 PF14617 CMS1: U3-containing 9 90.6 0.21 4.5E-06 45.1 2.8 86 104-203 125-212 (252)
388 PHA02542 41 41 helicase; Provi 90.5 0.8 1.7E-05 45.8 7.1 35 46-82 169-207 (473)
389 TIGR03346 chaperone_ClpB ATP-d 90.5 0.28 6.2E-06 53.0 4.3 16 66-81 195-210 (852)
390 cd01121 Sms Sms (bacterial rad 90.4 0.57 1.2E-05 45.2 5.8 25 57-81 70-98 (372)
391 PF01443 Viral_helicase1: Vira 90.3 0.095 2.1E-06 47.1 0.4 14 68-81 1-14 (234)
392 PF01078 Mg_chelatase: Magnesi 90.2 0.23 4.9E-06 43.3 2.6 29 53-81 10-38 (206)
393 PF12775 AAA_7: P-loop contain 90.1 0.19 4.1E-06 46.4 2.1 26 56-81 24-49 (272)
394 PRK11034 clpA ATP-dependent Cl 90.0 1.2 2.5E-05 47.3 8.2 26 56-81 197-223 (758)
395 KOG2170|consensus 90.0 1.6 3.4E-05 40.1 7.8 57 188-250 174-237 (344)
396 KOG0733|consensus 90.0 0.96 2.1E-05 45.5 7.0 16 66-81 224-239 (802)
397 PRK07773 replicative DNA helic 90.0 0.77 1.7E-05 49.9 7.0 33 48-82 199-234 (886)
398 PRK00440 rfc replication facto 89.9 1.3 2.8E-05 41.8 7.9 16 66-81 39-54 (319)
399 PTZ00454 26S protease regulato 89.9 0.42 9E-06 46.7 4.5 16 66-81 180-195 (398)
400 TIGR01243 CDC48 AAA family ATP 89.9 0.47 1E-05 50.6 5.2 16 66-81 488-503 (733)
401 PRK07399 DNA polymerase III su 89.8 0.82 1.8E-05 43.1 6.3 41 191-238 123-163 (314)
402 PRK13822 conjugal transfer cou 89.8 0.45 9.8E-06 49.3 4.8 41 64-118 223-263 (641)
403 PRK11823 DNA repair protein Ra 89.8 0.83 1.8E-05 45.4 6.6 26 57-82 68-97 (446)
404 PHA02533 17 large terminase pr 89.7 1 2.2E-05 45.8 7.2 57 51-118 61-117 (534)
405 TIGR02639 ClpA ATP-dependent C 89.7 1.2 2.6E-05 47.4 8.1 16 66-81 204-219 (731)
406 cd03115 SRP The signal recogni 89.6 3.2 6.8E-05 35.2 9.3 14 68-81 3-16 (173)
407 PHA02544 44 clamp loader, smal 89.5 1.4 3.1E-05 41.6 7.8 39 192-235 100-138 (316)
408 COG0606 Predicted ATPase with 89.5 0.27 5.8E-06 48.0 2.7 28 54-81 187-214 (490)
409 TIGR02640 gas_vesic_GvpN gas v 89.5 0.24 5.3E-06 45.5 2.4 25 57-82 14-38 (262)
410 TIGR00959 ffh signal recogniti 89.4 2.7 5.9E-05 41.4 9.6 15 67-81 101-115 (428)
411 PRK14953 DNA polymerase III su 89.4 1.4 2.9E-05 44.4 7.7 16 68-83 41-56 (486)
412 PRK08058 DNA polymerase III su 88.9 1.2 2.6E-05 42.4 6.8 42 190-237 108-149 (329)
413 PRK14971 DNA polymerase III su 88.9 2.1 4.4E-05 44.5 8.8 40 190-235 119-158 (614)
414 PRK13850 type IV secretion sys 88.9 0.45 9.7E-06 49.5 4.0 41 64-118 138-178 (670)
415 PRK10689 transcription-repair 88.9 1.9 4.1E-05 48.1 9.0 81 107-204 811-891 (1147)
416 PRK13851 type IV secretion sys 88.8 0.39 8.4E-06 45.8 3.3 28 54-81 151-178 (344)
417 KOG0733|consensus 88.7 0.71 1.5E-05 46.4 5.0 16 66-81 546-561 (802)
418 KOG0732|consensus 88.5 0.62 1.3E-05 50.1 4.7 54 189-242 360-418 (1080)
419 TIGR01243 CDC48 AAA family ATP 88.4 1.1 2.4E-05 47.7 6.7 16 66-81 213-228 (733)
420 TIGR02760 TraI_TIGR conjugativ 88.3 1.2 2.6E-05 52.5 7.4 59 50-118 1020-1081(1960)
421 COG0470 HolB ATPase involved i 88.3 1.2 2.6E-05 42.1 6.4 40 191-236 108-147 (325)
422 PRK13900 type IV secretion sys 88.2 0.44 9.5E-06 45.3 3.2 27 55-81 150-176 (332)
423 PRK13880 conjugal transfer cou 88.2 0.41 8.8E-06 49.8 3.2 41 64-118 174-214 (636)
424 KOG0331|consensus 88.0 0.83 1.8E-05 45.5 5.0 75 104-198 340-415 (519)
425 COG4962 CpaF Flp pilus assembl 88.0 0.64 1.4E-05 43.6 4.0 62 45-120 154-215 (355)
426 COG0305 DnaB Replicative DNA h 87.8 2.2 4.8E-05 41.8 7.7 91 143-235 258-353 (435)
427 COG1221 PspF Transcriptional r 87.8 0.87 1.9E-05 44.0 4.9 17 66-82 102-118 (403)
428 PF06745 KaiC: KaiC; InterPro 87.7 0.24 5.3E-06 44.3 1.1 17 66-82 20-36 (226)
429 COG0464 SpoVK ATPases of the A 87.5 0.99 2.2E-05 45.7 5.5 50 191-240 334-388 (494)
430 KOG0741|consensus 87.5 3.5 7.5E-05 41.0 8.7 61 191-255 597-662 (744)
431 KOG0729|consensus 87.2 2.4 5.2E-05 38.2 6.9 17 65-81 211-227 (435)
432 COG1444 Predicted P-loop ATPas 87.2 0.81 1.8E-05 47.7 4.6 56 53-118 218-274 (758)
433 TIGR03877 thermo_KaiC_1 KaiC d 87.0 0.22 4.8E-06 45.0 0.4 26 57-82 9-38 (237)
434 TIGR00580 mfd transcription-re 86.9 1.6 3.5E-05 47.4 6.9 82 106-204 661-742 (926)
435 TIGR02974 phageshock_pspF psp 86.9 1.6 3.5E-05 41.5 6.2 22 60-81 17-38 (329)
436 smart00382 AAA ATPases associa 86.8 0.31 6.8E-06 39.2 1.2 16 66-81 3-18 (148)
437 TIGR03345 VI_ClpV1 type VI sec 86.5 1.2 2.6E-05 48.1 5.6 14 68-81 599-612 (852)
438 PRK08533 flagellar accessory p 86.5 1.8 3.9E-05 38.8 6.0 16 66-81 25-40 (230)
439 COG2909 MalT ATP-dependent tra 86.5 4.8 0.0001 42.4 9.6 55 181-240 118-172 (894)
440 COG1435 Tdk Thymidine kinase [ 86.4 1 2.2E-05 38.7 4.0 16 66-81 5-20 (201)
441 PRK10590 ATP-dependent RNA hel 86.4 1.6 3.4E-05 43.8 6.1 74 105-198 245-319 (456)
442 PRK06647 DNA polymerase III su 86.3 2.9 6.2E-05 42.9 8.0 18 66-83 39-56 (563)
443 KOG0344|consensus 86.2 3.6 7.7E-05 41.2 8.2 87 99-203 381-467 (593)
444 PRK04537 ATP-dependent RNA hel 86.1 2.3 5E-05 43.8 7.3 76 106-201 258-334 (572)
445 KOG0333|consensus 86.1 1.3 2.7E-05 43.7 5.0 75 103-197 515-590 (673)
446 cd01129 PulE-GspE PulE/GspE Th 86.0 0.82 1.8E-05 42.0 3.6 30 52-81 66-96 (264)
447 PF00437 T2SE: Type II/IV secr 85.8 0.49 1.1E-05 43.6 2.1 30 52-81 114-143 (270)
448 PRK04837 ATP-dependent RNA hel 85.7 2.2 4.7E-05 42.2 6.8 75 106-200 256-331 (423)
449 PRK13876 conjugal transfer cou 85.5 0.6 1.3E-05 48.6 2.7 41 64-118 143-183 (663)
450 PF14532 Sigma54_activ_2: Sigm 85.5 3.1 6.7E-05 33.8 6.5 23 59-81 15-37 (138)
451 cd01125 repA Hexameric Replica 85.4 4.1 8.8E-05 36.7 7.8 20 67-86 3-22 (239)
452 PRK12608 transcription termina 85.2 3.7 8.1E-05 39.4 7.6 28 53-81 119-149 (380)
453 TIGR00708 cobA cob(I)alamin ad 85.2 4.5 9.7E-05 34.4 7.3 50 190-242 95-144 (173)
454 PRK06749 replicative DNA helic 85.2 2.6 5.7E-05 41.6 6.9 33 48-82 168-203 (428)
455 TIGR02880 cbbX_cfxQ probable R 85.0 0.29 6.3E-06 45.5 0.2 17 66-82 59-75 (284)
456 TIGR02397 dnaX_nterm DNA polym 84.9 2.6 5.7E-05 40.5 6.8 17 66-82 37-53 (355)
457 cd00983 recA RecA is a bacter 84.9 0.63 1.4E-05 43.9 2.3 27 57-83 42-73 (325)
458 PF10593 Z1: Z1 domain; Inter 84.8 3.2 6.9E-05 37.4 6.7 105 280-407 94-203 (239)
459 CHL00095 clpC Clp protease ATP 84.8 2.1 4.6E-05 46.2 6.6 104 68-235 542-659 (821)
460 PRK05917 DNA polymerase III su 84.7 2.8 6E-05 38.9 6.4 43 191-239 94-136 (290)
461 TIGR03499 FlhF flagellar biosy 84.7 1 2.3E-05 41.7 3.7 16 66-81 195-210 (282)
462 PHA03372 DNA packaging termina 84.7 6.6 0.00014 40.0 9.3 166 33-247 176-346 (668)
463 KOG0730|consensus 84.6 2.4 5.2E-05 43.2 6.2 27 55-81 457-484 (693)
464 COG0513 SrmB Superfamily II DN 84.5 1.9 4.2E-05 43.7 5.8 72 106-197 274-346 (513)
465 TIGR01547 phage_term_2 phage t 84.5 1.5 3.2E-05 43.0 4.8 41 67-116 3-43 (396)
466 cd01128 rho_factor Transcripti 84.4 2.4 5.1E-05 38.5 5.7 21 60-81 12-32 (249)
467 TIGR02655 circ_KaiC circadian 84.3 0.57 1.2E-05 47.2 1.9 28 56-83 250-281 (484)
468 PRK10436 hypothetical protein; 84.3 0.9 2E-05 45.2 3.3 30 52-81 204-234 (462)
469 TIGR02767 TraG-Ti Ti-type conj 84.3 0.79 1.7E-05 47.4 2.9 41 64-118 210-250 (623)
470 PTZ00110 helicase; Provisional 84.1 2.8 6E-05 43.0 6.8 74 106-199 378-452 (545)
471 COG1197 Mfd Transcription-repa 84.1 3.6 7.9E-05 44.9 7.7 66 299-364 642-722 (1139)
472 TIGR02533 type_II_gspE general 84.0 1.1 2.3E-05 45.2 3.6 30 52-81 228-258 (486)
473 TIGR03819 heli_sec_ATPase heli 83.9 1 2.2E-05 43.0 3.3 30 52-81 165-194 (340)
474 KOG0298|consensus 83.7 2 4.3E-05 46.9 5.6 89 298-388 1219-1315(1394)
475 KOG2228|consensus 83.7 6.7 0.00015 36.8 8.2 16 66-81 50-65 (408)
476 PLN03187 meiotic recombination 83.5 4.1 9E-05 38.9 7.2 56 57-118 114-173 (344)
477 PHA00350 putative assembly pro 83.4 6 0.00013 38.4 8.3 16 68-83 4-19 (399)
478 COG0465 HflB ATP-dependent Zn 83.3 3 6.5E-05 42.5 6.4 52 193-244 243-302 (596)
479 KOG0736|consensus 83.1 1.5 3.3E-05 45.4 4.3 52 192-243 764-824 (953)
480 PRK09354 recA recombinase A; P 82.9 1.1 2.3E-05 42.7 3.0 27 57-83 47-78 (349)
481 PTZ00293 thymidine kinase; Pro 82.9 3 6.5E-05 36.6 5.5 16 66-81 5-20 (211)
482 PF07728 AAA_5: AAA domain (dy 82.9 0.6 1.3E-05 38.0 1.2 15 67-81 1-15 (139)
483 COG0593 DnaA ATPase involved i 82.7 8.2 0.00018 37.6 8.9 125 108-241 88-221 (408)
484 COG4128 Zot Zonula occludens t 82.6 1.6 3.5E-05 39.8 3.7 22 69-94 5-26 (398)
485 TIGR02012 tigrfam_recA protein 82.4 2.6 5.6E-05 39.8 5.3 27 57-83 42-73 (321)
486 COG1132 MdlB ABC-type multidru 82.2 5.1 0.00011 41.4 7.9 51 158-208 448-499 (567)
487 TIGR03880 KaiC_arch_3 KaiC dom 82.0 1.6 3.6E-05 38.9 3.8 17 66-82 17-33 (224)
488 COG2805 PilT Tfp pilus assembl 82.0 0.65 1.4E-05 42.6 1.1 15 67-81 127-141 (353)
489 PRK05986 cob(I)alamin adenolsy 81.9 17 0.00037 31.4 9.7 49 190-241 113-161 (191)
490 COG1134 TagH ABC-type polysacc 81.8 0.85 1.8E-05 40.6 1.7 45 190-238 163-207 (249)
491 TIGR02688 conserved hypothetic 81.8 2.9 6.3E-05 40.8 5.4 52 30-81 169-225 (449)
492 KOG1807|consensus 81.8 1.8 3.9E-05 44.8 4.1 63 52-130 381-447 (1025)
493 PHA02244 ATPase-like protein 81.7 1.5 3.1E-05 42.1 3.4 24 58-81 112-135 (383)
494 PRK13531 regulatory ATPase Rav 81.7 1.6 3.4E-05 43.4 3.7 24 57-81 32-55 (498)
495 TIGR02538 type_IV_pilB type IV 81.7 1.2 2.7E-05 45.7 3.2 30 52-81 302-332 (564)
496 PRK10733 hflB ATP-dependent me 81.6 1.7 3.6E-05 45.6 4.1 16 66-81 186-201 (644)
497 COG0541 Ffh Signal recognition 81.5 7 0.00015 38.0 7.8 57 68-144 103-161 (451)
498 TIGR02788 VirB11 P-type DNA tr 81.2 1.3 2.8E-05 41.7 2.9 26 56-81 135-160 (308)
499 PRK11192 ATP-dependent RNA hel 81.2 2.6 5.7E-05 41.8 5.3 74 105-198 245-319 (434)
500 PRK10917 ATP-dependent DNA hel 81.2 4.5 9.8E-05 42.7 7.2 68 299-366 309-391 (681)
No 1
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.1e-54 Score=440.12 Aligned_cols=382 Identities=36% Similarity=0.594 Sum_probs=314.5
Q ss_pred CCCCCCCC-HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC
Q psy7952 25 DRKGGKVS-EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN 103 (444)
Q Consensus 25 ~~~~~~~~-~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~ 103 (444)
+|....++ ...+...++..||+..|+ ++|.++++.++.| +|+++.+|||+|||++ |++|+ +...+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFR-p~Q~eaI~aiL~G-rDVLVimPTGSGKSLc--------YQLPA----L~~~G 501 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFR-PNQREIINATMSG-YDVFVLMPTGGGKSLT--------YQLPA----LICPG 501 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCC-HHHHHHHHHHHcC-CCEEEEcCCCccHHHH--------HHHHH----HHcCC
Confidence 35544444 567888999999999977 8999999999999 9999999999999999 99999 77777
Q ss_pred ccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCcccccc-HH
Q psy7952 104 VRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTES-FH 181 (444)
Q Consensus 104 ~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~-~~ 181 (444)
.+ |||+|+++|+ .+|+..+ ..+ +.+..+.++....+....+..+....+.++|+|+|||++.... +.
T Consensus 502 iT---LVISPLiSLm-----qDQV~~L~~~G---I~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll 570 (1195)
T PLN03137 502 IT---LVISPLVSLI-----QDQIMNLLQAN---IPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLL 570 (1195)
T ss_pred cE---EEEeCHHHHH-----HHHHHHHHhCC---CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHH
Confidence 77 9999999999 8899988 778 9999999999988888888777655578999999999986421 22
Q ss_pred HHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec
Q psy7952 182 YLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT 261 (444)
Q Consensus 182 ~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~ 261 (444)
..+........+.+|||||||++++||++|++.|..+..+.+.++. .+++++|||+++...+++...+++..+ .++..
T Consensus 571 ~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~-vPilALTATAT~~V~eDI~~~L~l~~~-~vfr~ 648 (1195)
T PLN03137 571 RHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN-IPVLALTATATASVKEDVVQALGLVNC-VVFRQ 648 (1195)
T ss_pred HHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCC-CCeEEEEecCCHHHHHHHHHHcCCCCc-EEeec
Confidence 2233333345689999999999999999999999998877777776 889999999999999999999987766 45666
Q ss_pred CCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHH
Q psy7952 262 STFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSR 331 (444)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~ 331 (444)
+..++++.|.+..... .....+..++. .. ..+.++||||+++++|+.++..|... |++++|..
T Consensus 649 Sf~RpNL~y~Vv~k~k--k~le~L~~~I~----~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~ 721 (1195)
T PLN03137 649 SFNRPNLWYSVVPKTK--KCLEDIDKFIK----EN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAF 721 (1195)
T ss_pred ccCccceEEEEeccch--hHHHHHHHHHH----hc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHH
Confidence 7889999887765421 11222333322 21 13567899999999999999999876 89999999
Q ss_pred HHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhccc
Q psy7952 332 VQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTS 411 (444)
Q Consensus 332 ~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (444)
+++.|..|+++|||||+++++|||+|+|++|||+++|.|++.|+||+||+||+|..|.|++|++..|...++.++.....
T Consensus 722 vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~ 801 (1195)
T PLN03137 722 VQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGV 801 (1195)
T ss_pred HHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864432
Q ss_pred hhH-------------HHHHHHHhhHHHHHHHhhh----------ceeeeec
Q psy7952 412 TKR-------------EQLELKFKNYLSMLEYCEQ----------GYFLVIL 440 (444)
Q Consensus 412 ~~~-------------~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 440 (444)
... ...+....++..|++||+. .||.+..
T Consensus 802 ~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~~ 853 (1195)
T PLN03137 802 EQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKF 853 (1195)
T ss_pred ccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHccccc
Confidence 210 0123457889999999986 4677753
No 2
>KOG0352|consensus
Probab=100.00 E-value=7.4e-55 Score=394.29 Aligned_cols=379 Identities=43% Similarity=0.766 Sum_probs=355.7
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
.+..+.++|++.||+..|.++.|..|+..+..+++||.+++|||+||+++ |++|+ +..+|.+ |++
T Consensus 3 ~Er~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLC--------yQLPa----L~~~gIT---IV~ 67 (641)
T KOG0352|consen 3 MERKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLC--------YQLPA----LVHGGIT---IVI 67 (641)
T ss_pred hHHHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhh--------hhchH----HHhCCeE---EEe
Confidence 46778899999999999999999999999999889999999999999999 99999 9999999 999
Q ss_pred cchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh
Q psy7952 112 SPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY 190 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~ 190 (444)
.|..+|+ .+|+..+ ... +.+..+++.++..++..+.-++........+++.|||+..+..|..+++.+.+.
T Consensus 68 SPLiALI-----kDQiDHL~~LK---Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r 139 (641)
T KOG0352|consen 68 SPLIALI-----KDQIDHLKRLK---VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANR 139 (641)
T ss_pred hHHHHHH-----HHHHHHHHhcC---CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhh
Confidence 9999999 9999999 888 999999999999999999999999899999999999999999999999999999
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceE
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFY 270 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 270 (444)
..+.|+|+||+|+.+.||++|++.|..+..+...++. +++|++|||.++.+.+++...+.+.+|+-++..+..|.|++|
T Consensus 140 ~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~-vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFY 218 (641)
T KOG0352|consen 140 DVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPG-VPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFY 218 (641)
T ss_pred ceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCC-CceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhH
Confidence 9999999999999999999999999999999998887 999999999999999999999999999999999999999999
Q ss_pred EEEEcccchhhHHHHHHHHHHHhccCC-------CCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHH
Q psy7952 271 DVIFDDLLKDSYAHVKEFIEKCLGKDN-------KANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQ 333 (444)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~ 333 (444)
++...+...+.+..+.++....+.... ...++.||||.|++.|++++-.|... +...+|.++.
T Consensus 219 D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQ 298 (641)
T KOG0352|consen 219 DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQ 298 (641)
T ss_pred HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHH
Confidence 999999999999999999888877332 13568999999999999999998777 7889999999
Q ss_pred HHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhccchh
Q psy7952 334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTK 413 (444)
Q Consensus 334 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (444)
+.|.+++..||+||..++.|+|-|++++|||++.|.|+.-|.|-.||+||+|..+||-++++.+|...++.++.+++...
T Consensus 299 e~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~akl 378 (641)
T KOG0352|consen 299 EKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKL 378 (641)
T ss_pred HHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887765
Q ss_pred HH------HHHHHHhhHHHHHHHhhhc
Q psy7952 414 RE------QLELKFKNYLSMLEYCEQG 434 (444)
Q Consensus 414 ~~------~~~~~~~~~~~~~~~~~~~ 434 (444)
.+ ....-+..+.+|+.||++.
T Consensus 379 rek~~ke~~~k~~I~~F~k~~eFCE~~ 405 (641)
T KOG0352|consen 379 REKAKKEMQIKSIITGFAKMLEFCESA 405 (641)
T ss_pred HHhcchhhhHHHHHHHHHHHHHHHHHc
Confidence 54 4555688999999999964
No 3
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.5e-53 Score=410.13 Aligned_cols=369 Identities=38% Similarity=0.660 Sum_probs=327.1
Q ss_pred HHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcch
Q psy7952 35 ELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPI 114 (444)
Q Consensus 35 ~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~ 114 (444)
.+...|++.||+..|| +-|.+++..++++ +++++..|||.|||++ |++|+ +...|.+ |||+|.
T Consensus 4 ~~~~~L~~~fGy~~FR-~gQ~evI~~~l~g-~d~lvvmPTGgGKSlC--------yQiPA----ll~~G~T---LVVSPL 66 (590)
T COG0514 4 EAQQVLKQVFGYASFR-PGQQEIIDALLSG-KDTLVVMPTGGGKSLC--------YQIPA----LLLEGLT---LVVSPL 66 (590)
T ss_pred HHHHHHHHHhCccccC-CCHHHHHHHHHcC-CcEEEEccCCCCcchH--------hhhHH----HhcCCCE---EEECch
Confidence 3447799999999999 7999999999999 9999999999999999 99999 8889999 999999
Q ss_pred hhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCc
Q psy7952 115 LSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKL 193 (444)
Q Consensus 115 ~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~ 193 (444)
.+|. .+|++++ ..| +.+..+++..+..++..+...+. .+..++++.+||++.++.|...+. ...+
T Consensus 67 iSLM-----~DQV~~l~~~G---i~A~~lnS~l~~~e~~~v~~~l~--~g~~klLyisPErl~~~~f~~~L~----~~~i 132 (590)
T COG0514 67 ISLM-----KDQVDQLEAAG---IRAAYLNSTLSREERQQVLNQLK--SGQLKLLYISPERLMSPRFLELLK----RLPI 132 (590)
T ss_pred HHHH-----HHHHHHHHHcC---ceeehhhcccCHHHHHHHHHHHh--cCceeEEEECchhhcChHHHHHHH----hCCC
Confidence 9999 9999999 889 99999999999999998888775 467999999999999876555444 5689
Q ss_pred cEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEE
Q psy7952 194 AYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI 273 (444)
Q Consensus 194 ~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 273 (444)
.+++|||||++++||++||+.|..+..+...+++ ++++++|||.++.+..++.+.+++..+ .++..+..|||+.|.+.
T Consensus 133 ~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~-~p~~AlTATA~~~v~~DI~~~L~l~~~-~~~~~sfdRpNi~~~v~ 210 (590)
T COG0514 133 SLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPN-PPVLALTATATPRVRDDIREQLGLQDA-NIFRGSFDRPNLALKVV 210 (590)
T ss_pred ceEEechHHHHhhcCCccCHhHHHHHHHHhhCCC-CCEEEEeCCCChHHHHHHHHHhcCCCc-ceEEecCCCchhhhhhh
Confidence 9999999999999999999999999999999995 999999999999999999999988776 56778899999999988
Q ss_pred EcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccE
Q psy7952 274 FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINV 343 (444)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~v 343 (444)
.......+.. ++.+. ......++||||.|++.++.+++.|... +..++|..+.++|..++++|
T Consensus 211 ~~~~~~~q~~----fi~~~---~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~i 283 (590)
T COG0514 211 EKGEPSDQLA----FLATV---LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKV 283 (590)
T ss_pred hcccHHHHHH----HHHhh---ccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcE
Confidence 7652222222 33331 1225677999999999999999999988 99999999999999999999
Q ss_pred EEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhccchhHHHHHHHHhh
Q psy7952 344 ITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKN 423 (444)
Q Consensus 344 LvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (444)
+|||.+++.|||-|++++|||+++|.|++.|.|-+|||||+|.+..|++++++.|....+++++...+ ..+.......+
T Consensus 284 iVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~-~~~~~~~~~~k 362 (590)
T COG0514 284 MVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP-DEEQKQIELAK 362 (590)
T ss_pred EEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcc-hHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998776 33455556788
Q ss_pred HHHHHHHhhhc---------eeeeecccCC
Q psy7952 424 YLSMLEYCEQG---------YFLVILVFPC 444 (444)
Q Consensus 424 ~~~~~~~~~~~---------~~~~~~~~~~ 444 (444)
+..|..+|+.. ||.+....||
T Consensus 363 l~~~~~~~e~~~crr~~ll~yfge~~~~~c 392 (590)
T COG0514 363 LRQMIAYCETQTCRRLVLLKYFGEDEPEPC 392 (590)
T ss_pred HHHHHHhcccccchHHHHHHhcCccccccc
Confidence 89999999988 8888765555
No 4
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.1e-51 Score=404.88 Aligned_cols=336 Identities=40% Similarity=0.709 Sum_probs=282.9
Q ss_pred HHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 39 KLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 39 ~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
.|++.||++.|+ ++|.++++.++.| +++++.+|||+|||++ |++|+ +...+.. ||++|+++|+
T Consensus 2 ~l~~~~g~~~~r-~~Q~~ai~~~l~g-~dvlv~apTGsGKTl~--------y~lp~----l~~~~~~---lVi~P~~~L~ 64 (470)
T TIGR00614 2 ILKTVFGLSSFR-PVQLEVINAVLLG-RDCFVVMPTGGGKSLC--------YQLPA----LCSDGIT---LVISPLISLM 64 (470)
T ss_pred hhHhhcCCCCCC-HHHHHHHHHHHcC-CCEEEEcCCCCcHhHH--------HHHHH----HHcCCcE---EEEecHHHHH
Confidence 478889999955 8999999999999 8999999999999999 89998 6666666 9999999999
Q ss_pred cccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEE
Q psy7952 119 YLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIV 197 (444)
Q Consensus 119 ~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iV 197 (444)
.+++..+ ..+ +.+..+.++....+......++. .+.++|+++||+.+.... .+........++++||
T Consensus 65 -----~dq~~~l~~~g---i~~~~l~~~~~~~~~~~i~~~~~--~~~~~il~~TPe~l~~~~--~~~~~l~~~~~i~~iV 132 (470)
T TIGR00614 65 -----EDQVLQLKASG---IPATFLNSSQSKEQQKNVLTDLK--DGKIKLLYVTPEKCSASN--RLLQTLEERKGITLIA 132 (470)
T ss_pred -----HHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECHHHHcCch--hHHHHHHhcCCcCEEE
Confidence 8889888 777 88889999888777766666653 467899999999986432 1222222567899999
Q ss_pred EeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEccc
Q psy7952 198 VDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDL 277 (444)
Q Consensus 198 iDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (444)
|||||++.+||++|++.+..+..+...+++ .+++++|||+++....++.+.+++..+. +...+..++++.+.+.....
T Consensus 133 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~-~~~l~lTAT~~~~~~~di~~~l~l~~~~-~~~~s~~r~nl~~~v~~~~~ 210 (470)
T TIGR00614 133 VDEAHCISQWGHDFRPDYKALGSLKQKFPN-VPIMALTATASPSVREDILRQLNLKNPQ-IFCTSFDRPNLYYEVRRKTP 210 (470)
T ss_pred EeCCcccCccccccHHHHHHHHHHHHHcCC-CceEEEecCCCHHHHHHHHHHcCCCCCc-EEeCCCCCCCcEEEEEeCCc
Confidence 999999999999999999999888887776 8999999999999988999988887774 44556778888777765432
Q ss_pred chhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEc
Q psy7952 278 LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITAT 347 (444)
Q Consensus 278 ~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT 347 (444)
.....+...+.. . ..+.++||||+++++++.++..|.+. +++.+|..+++.|++|+++|||||
T Consensus 211 --~~~~~l~~~l~~---~--~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT 283 (470)
T TIGR00614 211 --KILEDLLRFIRK---E--FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVAT 283 (470)
T ss_pred --cHHHHHHHHHHH---h--cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEe
Confidence 222333333332 1 14667799999999999999999876 899999999999999999999999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhccch
Q psy7952 348 ISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTST 412 (444)
Q Consensus 348 ~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (444)
+++++|||+|++++||++++|.|...|+||+||+||.|.+|.|++++.+.+...++.++......
T Consensus 284 ~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~ 348 (470)
T TIGR00614 284 VAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLMEEPDG 348 (470)
T ss_pred chhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhcCCch
Confidence 99999999999999999999999999999999999999999999999999999999998765443
No 5
>KOG0331|consensus
Probab=100.00 E-value=7.9e-52 Score=394.77 Aligned_cols=337 Identities=22% Similarity=0.303 Sum_probs=276.6
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc------CCccc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN------GNVRS 106 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~------~~~~~ 106 (444)
..+...+++.. ||+. ||++|...|+.++.| +|++..|.||||||++ |++|+ +.++.. .+..|
T Consensus 99 s~~~~~~lk~~-g~~~-PtpIQaq~wp~~l~G-rD~v~iA~TGSGKTLa--------y~lP~-i~~l~~~~~~~~~~~~P 166 (519)
T KOG0331|consen 99 SEELMKALKEQ-GFEK-PTPIQAQGWPIALSG-RDLVGIARTGSGKTLA--------YLLPA-IVHLNNEQGKLSRGDGP 166 (519)
T ss_pred cHHHHHHHHhc-CCCC-CchhhhcccceeccC-CceEEEeccCCcchhh--------hhhHH-HHHHHhccccccCCCCC
Confidence 55667777775 9997 999999999999999 9999999999999999 99999 444443 34568
Q ss_pred eeEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 107 RNGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 107 ~vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
++||++|||+|+ +||.+.+..+ ... ++...++|+.....+...+ ..+.+|+|+||+++. +.+.
T Consensus 167 ~vLVL~PTRELA--~QV~~~~~~~~~~~~---~~~~cvyGG~~~~~Q~~~l------~~gvdiviaTPGRl~----d~le 231 (519)
T KOG0331|consen 167 IVLVLAPTRELA--VQVQAEAREFGKSLR---LRSTCVYGGAPKGPQLRDL------ERGVDVVIATPGRLI----DLLE 231 (519)
T ss_pred eEEEEcCcHHHH--HHHHHHHHHHcCCCC---ccEEEEeCCCCccHHHHHH------hcCCcEEEeCChHHH----HHHH
Confidence 999999999999 6667777777 444 7799999999888665544 568999999999985 6666
Q ss_pred HHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhh-CCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCC
Q psy7952 185 QHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFT-GNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST 263 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~ 263 (444)
....+++++.|+|+||||+|++.| |.+.+.. ++... +...|.++.|||++..+......++. ++..+.....
T Consensus 232 ~g~~~l~~v~ylVLDEADrMldmG--Fe~qI~~---Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~ 304 (519)
T KOG0331|consen 232 EGSLNLSRVTYLVLDEADRMLDMG--FEPQIRK---ILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--NPIQINVGNK 304 (519)
T ss_pred cCCccccceeEEEeccHHhhhccc--cHHHHHH---HHHhcCCCcccEEEEeeeccHHHHHHHHHHhc--CceEEEecch
Confidence 777888999999999999999999 7765554 45566 44457999999999999888888876 5554444432
Q ss_pred ----CCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHH
Q psy7952 264 ----FRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHER 329 (444)
Q Consensus 264 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r 329 (444)
.+.++...+...+ ...+...+..++.... ...++++||||++++.|++++..|+.. .++.+|
T Consensus 305 ~~~~a~~~i~qive~~~-~~~K~~~l~~lL~~~~---~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 305 KELKANHNIRQIVEVCD-ETAKLRKLGKLLEDIS---SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSER 380 (519)
T ss_pred hhhhhhcchhhhhhhcC-HHHHHHHHHHHHHHHh---ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHH
Confidence 2333333333333 4445555555555554 236789999999999999999999885 889999
Q ss_pred HHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 330 SRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 330 ~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
..+++.|++|+..|||||+++++|+|+|+|++||+||+|.+.++|+||+||+||.|+.|.+++|+...+....+++.+
T Consensus 381 ~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~ 458 (519)
T KOG0331|consen 381 DWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIK 458 (519)
T ss_pred HHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988887777754
No 6
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.5e-50 Score=411.63 Aligned_cols=368 Identities=33% Similarity=0.589 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
+....+.+++.||++.|+ ++|+++++.++.| +++++.+|||+|||++ |++|+ +...+.+ ||++
T Consensus 10 ~~~~~~~l~~~fG~~~~r-~~Q~~ai~~il~g-~dvlv~apTGsGKTl~--------y~lpa----l~~~g~t---lVis 72 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFR-PGQQEIIDAVLSG-RDCLVVMPTGGGKSLC--------YQIPA----LVLDGLT---LVVS 72 (607)
T ss_pred hhHHHHHHHHHcCCCCCC-HHHHHHHHHHHcC-CCEEEEcCCCchHHHH--------HHHHH----HHcCCCE---EEEe
Confidence 444567899999999855 8999999999999 9999999999999999 89998 6667766 9999
Q ss_pred chhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhC
Q psy7952 113 PILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYN 191 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~ 191 (444)
|+++|+ .+++..+ ..+ +.+..+++.............+. .+..+++++||+++....|.. .....
T Consensus 73 Pl~sL~-----~dqv~~l~~~g---i~~~~~~s~~~~~~~~~~~~~~~--~g~~~il~~tPe~l~~~~~~~----~l~~~ 138 (607)
T PRK11057 73 PLISLM-----KDQVDQLLANG---VAAACLNSTQTREQQLEVMAGCR--TGQIKLLYIAPERLMMDNFLE----HLAHW 138 (607)
T ss_pred cHHHHH-----HHHHHHHHHcC---CcEEEEcCCCCHHHHHHHHHHHh--CCCCcEEEEChHHhcChHHHH----HHhhC
Confidence 999999 8888888 777 88888888887776666655554 467899999999987533222 23345
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEE
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYD 271 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (444)
++++|||||||++.+||++|++.|..+..+...+++ .+++++|||+++....++...+++.++. +...+..++++.+.
T Consensus 139 ~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~-~~~v~lTAT~~~~~~~di~~~l~l~~~~-~~~~~~~r~nl~~~ 216 (607)
T PRK11057 139 NPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT-LPFMALTATADDTTRQDIVRLLGLNDPL-IQISSFDRPNIRYT 216 (607)
T ss_pred CCCEEEEeCccccccccCcccHHHHHHHHHHHhCCC-CcEEEEecCCChhHHHHHHHHhCCCCeE-EEECCCCCCcceee
Confidence 899999999999999999999999999888887765 8999999999999888888888887774 44456678888776
Q ss_pred EEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCc
Q psy7952 272 VIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEI 341 (444)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~ 341 (444)
+..... ....+...+. .. .+.++||||+|+++|+.++..|.+. +++.+|..+++.|++|+.
T Consensus 217 v~~~~~---~~~~l~~~l~----~~--~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~ 287 (607)
T PRK11057 217 LVEKFK---PLDQLMRYVQ----EQ--RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDL 287 (607)
T ss_pred eeeccc---hHHHHHHHHH----hc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCC
Confidence 654321 2222333322 22 5678999999999999999999876 889999999999999999
Q ss_pred cEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhccchhHHHHHHHH
Q psy7952 342 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKF 421 (444)
Q Consensus 342 ~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (444)
+|||||+++++|||+|++++||++++|.|...|+||+||+||.|.+|.+++++++.+...++.++....... ......
T Consensus 288 ~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~~~--~~~~~~ 365 (607)
T PRK11057 288 QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQ--QQDIER 365 (607)
T ss_pred CEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCcHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998887654433 222334
Q ss_pred hhHHHHHHHhh---------hceeeeecccCC
Q psy7952 422 KNYLSMLEYCE---------QGYFLVILVFPC 444 (444)
Q Consensus 422 ~~~~~~~~~~~---------~~~~~~~~~~~~ 444 (444)
..+..|..||+ -.||.+....||
T Consensus 366 ~~l~~~~~~~~~~~Crr~~~l~yf~e~~~~~c 397 (607)
T PRK11057 366 HKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPC 397 (607)
T ss_pred HHHHHHHHHHhcccCHHHHHHHHhCCCCCCCC
Confidence 56777888877 346666543343
No 7
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.1e-50 Score=411.88 Aligned_cols=354 Identities=35% Similarity=0.616 Sum_probs=298.3
Q ss_pred HHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhh
Q psy7952 37 TAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILS 116 (444)
Q Consensus 37 ~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~ 116 (444)
.+.|++.|||+.|+ ++|.++++.+++| +|+++.+|||+|||++ |++|+ +...+.+ +|++|+++
T Consensus 2 ~~~l~~~fg~~~fr-~~Q~~~i~~il~g-~dvlv~~PTG~GKTl~--------y~lpa----l~~~g~~---lVisPl~s 64 (591)
T TIGR01389 2 QQVLKRTFGYDDFR-PGQEEIISHVLDG-RDVLVVMPTGGGKSLC--------YQVPA----LLLKGLT---VVISPLIS 64 (591)
T ss_pred hHHHHHhcCCCCCC-HHHHHHHHHHHcC-CCEEEEcCCCccHhHH--------HHHHH----HHcCCcE---EEEcCCHH
Confidence 45789999999977 8999999999999 8999999999999999 88998 6667766 99999999
Q ss_pred hhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccE
Q psy7952 117 SFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAY 195 (444)
Q Consensus 117 L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~ 195 (444)
|+ .+|+..+ ..+ +.+..++++....+.......+. .+..+|+++||+++.+..| .......++++
T Consensus 65 L~-----~dq~~~l~~~g---i~~~~~~s~~~~~~~~~~~~~l~--~~~~~il~~tpe~l~~~~~----~~~l~~~~l~~ 130 (591)
T TIGR01389 65 LM-----KDQVDQLRAAG---VAAAYLNSTLSAKEQQDIEKALV--NGELKLLYVAPERLEQDYF----LNMLQRIPIAL 130 (591)
T ss_pred HH-----HHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHh--CCCCCEEEEChhHhcChHH----HHHHhcCCCCE
Confidence 99 8899988 777 88999999998887776666554 4678999999999975433 33345678999
Q ss_pred EEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEc
Q psy7952 196 IVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFD 275 (444)
Q Consensus 196 iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (444)
|||||||++++||++|++.|..+..+...+++ .+++++|||+++....++...+++.++.. +..+..++++.+.+...
T Consensus 131 iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~-~~~~~~r~nl~~~v~~~ 208 (591)
T TIGR01389 131 VAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANE-FITSFDRPNLRFSVVKK 208 (591)
T ss_pred EEEeCCcccccccCccHHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCe-EecCCCCCCcEEEEEeC
Confidence 99999999999999999999999988888877 66999999999999999999988877644 44567788888877654
Q ss_pred ccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEE
Q psy7952 276 DLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVIT 345 (444)
Q Consensus 276 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLv 345 (444)
. .....+.+.+.. . .+.++||||+|++.++.++..|... ++.++|..+++.|.+|+++|||
T Consensus 209 ~---~~~~~l~~~l~~----~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlV 279 (591)
T TIGR01389 209 N---NKQKFLLDYLKK----H--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMV 279 (591)
T ss_pred C---CHHHHHHHHHHh----c--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 3 222333333332 2 3678999999999999999999865 8899999999999999999999
Q ss_pred EcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhccchhHHHHHHHHhhHH
Q psy7952 346 ATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYL 425 (444)
Q Consensus 346 aT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (444)
||+++++|||+|++++||++++|.|...|+|++||+||.|.++.|++++++.+...++.++....+... ........+.
T Consensus 280 aT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~~~-~~~~~~~~l~ 358 (591)
T TIGR01389 280 ATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSEADDD-YKQIEREKLR 358 (591)
T ss_pred EechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhccCCcHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999877554432 2223456677
Q ss_pred HHHHHhhh
Q psy7952 426 SMLEYCEQ 433 (444)
Q Consensus 426 ~~~~~~~~ 433 (444)
+|..||+.
T Consensus 359 ~~~~~~~~ 366 (591)
T TIGR01389 359 AMIAYCET 366 (591)
T ss_pred HHHHHHcc
Confidence 78888774
No 8
>KOG0330|consensus
Probab=100.00 E-value=2.9e-51 Score=367.36 Aligned_cols=333 Identities=19% Similarity=0.233 Sum_probs=274.0
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
...+.++.++. |+.. ||++|.++++.++.| +|++..|.||||||.+ |++|+ ++.++.....++++|++
T Consensus 69 ~~~L~~ac~~l-~~~~-PT~IQ~~aiP~~L~g-~dvIglAeTGSGKT~a--------faLPI-l~~LL~~p~~~~~lVLt 136 (476)
T KOG0330|consen 69 HPELLEACQEL-GWKK-PTKIQSEAIPVALGG-RDVIGLAETGSGKTGA--------FALPI-LQRLLQEPKLFFALVLT 136 (476)
T ss_pred CHHHHHHHHHh-CcCC-CchhhhhhcchhhCC-CcEEEEeccCCCchhh--------hHHHH-HHHHHcCCCCceEEEec
Confidence 56677888875 8887 999999999999999 9999999999999999 99999 88888887778999999
Q ss_pred chhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH-HHHHh
Q psy7952 113 PILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL-QHLVR 189 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~-~~~~~ 189 (444)
|||+|+ +||.++++.+ ..| +.+..+.|+.+.......+ ...++|+|+||++|. +.+. ....+
T Consensus 137 PtRELA--~QI~e~fe~Lg~~ig---lr~~~lvGG~~m~~q~~~L------~kkPhilVaTPGrL~----dhl~~Tkgf~ 201 (476)
T KOG0330|consen 137 PTRELA--QQIAEQFEALGSGIG---LRVAVLVGGMDMMLQANQL------SKKPHILVATPGRLW----DHLENTKGFS 201 (476)
T ss_pred CcHHHH--HHHHHHHHHhccccC---eEEEEEecCchHHHHHHHh------hcCCCEEEeCcHHHH----HHHHhccCcc
Confidence 999999 7778899888 667 9999999999876554443 578999999999984 3333 23344
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCC--CC
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFR--SN 267 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~ 267 (444)
+..++++|+||||++++.. |...++ .++..+|...|.+++|||++..+.+... ..+.++..+...+... +.
T Consensus 202 le~lk~LVlDEADrlLd~d--F~~~ld---~ILk~ip~erqt~LfsATMt~kv~kL~r--asl~~p~~v~~s~ky~tv~~ 274 (476)
T KOG0330|consen 202 LEQLKFLVLDEADRLLDMD--FEEELD---YILKVIPRERQTFLFSATMTKKVRKLQR--ASLDNPVKVAVSSKYQTVDH 274 (476)
T ss_pred HHHhHHHhhchHHhhhhhh--hHHHHH---HHHHhcCccceEEEEEeecchhhHHHHh--hccCCCeEEeccchhcchHH
Confidence 5688999999999999876 665555 4555677889999999999998877543 3456676666554332 22
Q ss_pred ceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHh
Q psy7952 268 LFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFM 337 (444)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~ 337 (444)
+...+.+.. ...+..++..++.+. .+..+||||++..++..++-.|+.. |+++.|...+++|+
T Consensus 275 lkQ~ylfv~-~k~K~~yLV~ll~e~------~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk 347 (476)
T KOG0330|consen 275 LKQTYLFVP-GKDKDTYLVYLLNEL------AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFK 347 (476)
T ss_pred hhhheEecc-ccccchhHHHHHHhh------cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHh
Confidence 222222222 123444566666654 5689999999999999999999887 99999999999999
Q ss_pred cCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHH
Q psy7952 338 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 406 (444)
Q Consensus 338 ~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 406 (444)
+|...||+|||++++|+|+|.+++||+||.|.+..+|+||+||++|.|.+|.++.+++..|.+-++++.
T Consensus 348 ~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE 416 (476)
T KOG0330|consen 348 AGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIE 416 (476)
T ss_pred ccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988877774
No 9
>KOG0328|consensus
Probab=100.00 E-value=1.6e-49 Score=341.65 Aligned_cols=335 Identities=17% Similarity=0.268 Sum_probs=279.9
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
.+++.+++-. +||+. |+.+|++|+++++.| +|++..+..|+|||.+ |.+.. ++.+--+.+...+++++
T Consensus 35 ~edlLrgiY~-yGfek-PS~IQqrAi~~IlkG-rdViaQaqSGTGKTa~--------~si~v-lq~~d~~~r~tQ~lils 102 (400)
T KOG0328|consen 35 KEDLLRGIYA-YGFEK-PSAIQQRAIPQILKG-RDVIAQAQSGTGKTAT--------FSISV-LQSLDISVRETQALILS 102 (400)
T ss_pred hHHHHHHHHH-hccCC-chHHHhhhhhhhhcc-cceEEEecCCCCceEE--------EEeee-eeecccccceeeEEEec
Confidence 5677777766 59998 999999999999999 9999999999999999 77777 44444444545789999
Q ss_pred chhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh
Q psy7952 113 PILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY 190 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~ 190 (444)
||++|+ .|+.+.+..+ .++ +.+....|+.+..+....+ .-+.+++.+||+++. +.+.......
T Consensus 103 PTRELa--~Qi~~vi~alg~~mn---vq~hacigg~n~gedikkl------d~G~hvVsGtPGrv~----dmikr~~L~t 167 (400)
T KOG0328|consen 103 PTRELA--VQIQKVILALGDYMN---VQCHACIGGKNLGEDIKKL------DYGQHVVSGTPGRVL----DMIKRRSLRT 167 (400)
T ss_pred ChHHHH--HHHHHHHHHhccccc---ceEEEEecCCccchhhhhh------cccceEeeCCCchHH----HHHHhccccc
Confidence 999999 5567777777 667 9999999998876544443 357899999999985 7777888888
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec--CCCCCCc
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT--STFRSNL 268 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~ 268 (444)
..+.++|+||++.+++.| |. ..+..+++.+|+++|++++|||++....+....+ +++|+.+... ......+
T Consensus 168 r~vkmlVLDEaDemL~kg--fk---~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kf--mtdpvrilvkrdeltlEgI 240 (400)
T KOG0328|consen 168 RAVKMLVLDEADEMLNKG--FK---EQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKF--MTDPVRILVKRDELTLEGI 240 (400)
T ss_pred cceeEEEeccHHHHHHhh--HH---HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh--cCCceeEEEecCCCchhhh
Confidence 899999999999998877 66 4455666788988999999999999998877665 4666655543 3333445
Q ss_pred eEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhc
Q psy7952 269 FYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMR 338 (444)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~ 338 (444)
...+...+..+.+...++++...+ .-.+.+|||||+..+..+.+.+++. |..++|+.+.+.|++
T Consensus 241 Kqf~v~ve~EewKfdtLcdLYd~L------tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs 314 (400)
T KOG0328|consen 241 KQFFVAVEKEEWKFDTLCDLYDTL------TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS 314 (400)
T ss_pred hhheeeechhhhhHhHHHHHhhhh------ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc
Confidence 555565666666777777766665 4567899999999999999999887 899999999999999
Q ss_pred CCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 339 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 339 g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
|..+||++|++.++|+|+|.+++||+||.|.+.+.|+||+||.||.|+.|.++-|+..++.+.++.+.+
T Consensus 315 g~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq 383 (400)
T KOG0328|consen 315 GKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQ 383 (400)
T ss_pred CCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988877754
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.9e-49 Score=393.66 Aligned_cols=338 Identities=18% Similarity=0.272 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccc----cCCcccee
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFIL----NGNVRSRN 108 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~----~~~~~~~v 108 (444)
++.+.+++++ +||+. ||++|.++++.++.| +|+++++|||+|||++ |++|++.+... ..+..+.+
T Consensus 138 ~~~l~~~l~~-~g~~~-pt~iQ~~aip~~l~G-~dvI~~ApTGSGKTla--------ylLP~l~~i~~~~~~~~~~gp~~ 206 (545)
T PTZ00110 138 PDYILKSLKN-AGFTE-PTPIQVQGWPIALSG-RDMIGIAETGSGKTLA--------FLLPAIVHINAQPLLRYGDGPIV 206 (545)
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhcC-CCEEEEeCCCChHHHH--------HHHHHHHHHHhcccccCCCCcEE
Confidence 4578888887 59998 899999999999999 9999999999999999 77777222211 12334678
Q ss_pred EEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 109 GWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 109 lil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
||++||++|+ .|+.+.+..+ ..+ +++..+.++.........+ ..+++|+|+||++|. +.+...
T Consensus 207 LIL~PTreLa--~Qi~~~~~~~~~~~~---i~~~~~~gg~~~~~q~~~l------~~~~~IlVaTPgrL~----d~l~~~ 271 (545)
T PTZ00110 207 LVLAPTRELA--EQIREQCNKFGASSK---IRNTVAYGGVPKRGQIYAL------RRGVEILIACPGRLI----DFLESN 271 (545)
T ss_pred EEECChHHHH--HHHHHHHHHHhcccC---ccEEEEeCCCCHHHHHHHH------HcCCCEEEECHHHHH----HHHHcC
Confidence 9999999999 4445666665 334 7788888887765443322 357899999999985 444444
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCC---
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST--- 263 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~--- 263 (444)
...+.++++||+||||++.+++ |...+.. ++...+.+.|++++|||++.........++. ..++.+.....
T Consensus 272 ~~~l~~v~~lViDEAd~mld~g--f~~~i~~---il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~-~~~v~i~vg~~~l~ 345 (545)
T PTZ00110 272 VTNLRRVTYLVLDEADRMLDMG--FEPQIRK---IVSQIRPDRQTLMWSATWPKEVQSLARDLCK-EEPVHVNVGSLDLT 345 (545)
T ss_pred CCChhhCcEEEeehHHhhhhcc--hHHHHHH---HHHhCCCCCeEEEEEeCCCHHHHHHHHHHhc-cCCEEEEECCCccc
Confidence 5567789999999999999887 6655544 4445666789999999998876655444432 33444333221
Q ss_pred CCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHH
Q psy7952 264 FRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQ 333 (444)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~ 333 (444)
...++...+.... ...+...+..++... ...+.++||||++++.|+.++..|... +++++|..++
T Consensus 346 ~~~~i~q~~~~~~-~~~k~~~L~~ll~~~----~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il 420 (545)
T PTZ00110 346 ACHNIKQEVFVVE-EHEKRGKLKMLLQRI----MRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVL 420 (545)
T ss_pred cCCCeeEEEEEEe-chhHHHHHHHHHHHh----cccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHH
Confidence 1223333332221 123333344444332 225789999999999999999999865 7899999999
Q ss_pred HHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 334 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
+.|++|+.+|||||+++++|||+|++++||++|+|.+...|+||+||+||.|..|.+++|+++++......+.+
T Consensus 421 ~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 421 NEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred HHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877666644
No 11
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.6e-48 Score=387.71 Aligned_cols=337 Identities=15% Similarity=0.195 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
...+.+++.. +||+. ||++|.++++.+++| +|++++||||+|||++ |.+|+ ++.+.......+++|++
T Consensus 12 ~~~l~~~l~~-~g~~~-~t~iQ~~ai~~~l~g-~dvi~~a~TGsGKT~a--------~~lpi-l~~l~~~~~~~~~lil~ 79 (460)
T PRK11776 12 PPALLANLNE-LGYTE-MTPIQAQSLPAILAG-KDVIAQAKTGSGKTAA--------FGLGL-LQKLDVKRFRVQALVLC 79 (460)
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhcC-CCEEEECCCCCcHHHH--------HHHHH-HHHhhhccCCceEEEEe
Confidence 4577888887 59998 889999999999999 9999999999999999 77777 44444333345789999
Q ss_pred chhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCC
Q psy7952 113 PILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNK 192 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~ 192 (444)
||++|+ .|+.+.++.+......+++..++|+.+.......+ ..+++|+|+||+++. ..+......+.+
T Consensus 80 PtreLa--~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l------~~~~~IvV~Tp~rl~----~~l~~~~~~l~~ 147 (460)
T PRK11776 80 PTRELA--DQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL------EHGAHIIVGTPGRIL----DHLRKGTLDLDA 147 (460)
T ss_pred CCHHHH--HHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh------cCCCCEEEEChHHHH----HHHHcCCccHHH
Confidence 999999 44455555553222238899999998876554333 468899999999985 334444456778
Q ss_pred ccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCC-CCCCceEE
Q psy7952 193 LAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST-FRSNLFYD 271 (444)
Q Consensus 193 ~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~ 271 (444)
+++||+||||++.+++ |... +..++...+...|++++|||+++........++ ..+..+..... ..+.+...
T Consensus 148 l~~lViDEad~~l~~g--~~~~---l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~i~~~ 220 (460)
T PRK11776 148 LNTLVLDEADRMLDMG--FQDA---IDAIIRQAPARRQTLLFSATYPEGIAAISQRFQ--RDPVEVKVESTHDLPAIEQR 220 (460)
T ss_pred CCEEEEECHHHHhCcC--cHHH---HHHHHHhCCcccEEEEEEecCcHHHHHHHHHhc--CCCEEEEECcCCCCCCeeEE
Confidence 9999999999998877 5544 445556677778999999999987766555544 34444433332 22333333
Q ss_pred EEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCc
Q psy7952 272 VIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEI 341 (444)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~ 341 (444)
+..... ..+. +.+..++... ...++||||++++.++.+++.|... +++.+|..+++.|++|+.
T Consensus 221 ~~~~~~-~~k~----~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~ 293 (460)
T PRK11776 221 FYEVSP-DERL----PALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSC 293 (460)
T ss_pred EEEeCc-HHHH----HHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 332221 1222 3333333332 4678999999999999999999876 899999999999999999
Q ss_pred cEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 342 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 342 ~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
++||||+++++|+|+|++++||++|.|.+...|+||+||+||.|..|.+++++.+++...+..+.+
T Consensus 294 ~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 294 SVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred cEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988877666643
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.2e-49 Score=386.45 Aligned_cols=332 Identities=18% Similarity=0.247 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC-------Ccc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG-------NVR 105 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~-------~~~ 105 (444)
+..+.+++.. +||.. ||++|.++++.++.| +|++++||||+|||++ |++|+ ++.+... ...
T Consensus 16 ~~~l~~~l~~-~g~~~-pt~iQ~~aip~il~g-~dvi~~ApTGsGKTla--------~llp~-l~~l~~~~~~~~~~~~~ 83 (423)
T PRK04837 16 HPQVVEALEK-KGFHN-CTPIQALALPLTLAG-RDVAGQAQTGTGKTMA--------FLTAT-FHYLLSHPAPEDRKVNQ 83 (423)
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CcEEEECCCCchHHHH--------HHHHH-HHHHHhcccccccccCC
Confidence 4678888887 69998 889999999999999 9999999999999999 76666 3333211 123
Q ss_pred ceeEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYL 183 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~ 183 (444)
+++||++||++|+ .|+.+++..+ ..+ +++..++|+.........+ ..+++|+|+||+++. ..+
T Consensus 84 ~~~lil~PtreLa--~Qi~~~~~~l~~~~~---~~v~~~~gg~~~~~~~~~l------~~~~~IlV~TP~~l~----~~l 148 (423)
T PRK04837 84 PRALIMAPTRELA--VQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVL------ESGVDILIGTTGRLI----DYA 148 (423)
T ss_pred ceEEEECCcHHHH--HHHHHHHHHHhccCC---ceEEEEECCCCHHHHHHHh------cCCCCEEEECHHHHH----HHH
Confidence 6789999999999 3345555555 345 8888889887765443333 457899999999985 444
Q ss_pred HHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCC--CCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec
Q psy7952 184 LQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGN--SIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT 261 (444)
Q Consensus 184 ~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~ 261 (444)
......+.+++++|+||||++.+++ |...+. .+++..+. ..+.+++|||++..........+ ..+..+...
T Consensus 149 ~~~~~~l~~v~~lViDEad~l~~~~--f~~~i~---~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~--~~p~~i~v~ 221 (423)
T PRK04837 149 KQNHINLGAIQVVVLDEADRMFDLG--FIKDIR---WLFRRMPPANQRLNMLFSATLSYRVRELAFEHM--NNPEYVEVE 221 (423)
T ss_pred HcCCcccccccEEEEecHHHHhhcc--cHHHHH---HHHHhCCCccceeEEEEeccCCHHHHHHHHHHC--CCCEEEEEc
Confidence 4455667899999999999998877 554443 34444543 24578999999987776655554 344433332
Q ss_pred CCC--CCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHH
Q psy7952 262 STF--RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHER 329 (444)
Q Consensus 262 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r 329 (444)
... ...+....... .. ......+..++... ...++||||+++..|+.++..|... +++.+|
T Consensus 222 ~~~~~~~~i~~~~~~~-~~----~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R 294 (423)
T PRK04837 222 PEQKTGHRIKEELFYP-SN----EEKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKR 294 (423)
T ss_pred CCCcCCCceeEEEEeC-CH----HHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHH
Confidence 221 22222222221 11 22233444444333 4678999999999999999999875 788999
Q ss_pred HHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHH
Q psy7952 330 SRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405 (444)
Q Consensus 330 ~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 405 (444)
..+++.|++|+++|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+.+++...+..+
T Consensus 295 ~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i 370 (423)
T PRK04837 295 LRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAI 370 (423)
T ss_pred HHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877666665
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3e-48 Score=383.99 Aligned_cols=335 Identities=19% Similarity=0.266 Sum_probs=253.8
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC------Cccc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG------NVRS 106 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~------~~~~ 106 (444)
..++.+++.+ +||.. ||++|.++++.++++ +|+++++|||+|||++ |++|+ ++.+... ....
T Consensus 9 ~~~l~~~l~~-~g~~~-pt~iQ~~ai~~il~g-~dvlv~apTGsGKTla--------~~lpi-l~~l~~~~~~~~~~~~~ 76 (456)
T PRK10590 9 SPDILRAVAE-QGYRE-PTPIQQQAIPAVLEG-RDLMASAQTGTGKTAG--------FTLPL-LQHLITRQPHAKGRRPV 76 (456)
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCCcHHHH--------HHHHH-HHHhhhcccccccCCCc
Confidence 4568888988 59998 889999999999999 9999999999999999 77776 3333221 1224
Q ss_pred eeEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 107 RNGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 107 ~vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
++||++||++|+ .|+.+.+..+ ..+ +.+..++|+.........+ .+.++|+|+||+++. ....
T Consensus 77 ~aLil~PtreLa--~Qi~~~~~~~~~~~~---~~~~~~~gg~~~~~~~~~l------~~~~~IiV~TP~rL~----~~~~ 141 (456)
T PRK10590 77 RALILTPTRELA--AQIGENVRDYSKYLN---IRSLVVFGGVSINPQMMKL------RGGVDVLVATPGRLL----DLEH 141 (456)
T ss_pred eEEEEeCcHHHH--HHHHHHHHHHhccCC---CEEEEEECCcCHHHHHHHH------cCCCcEEEEChHHHH----HHHH
Confidence 789999999999 3335555555 334 7788888888765543322 468899999999985 3334
Q ss_pred HHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCC
Q psy7952 185 QHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF 264 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (444)
.....+.++++||+||||++.+++ +. ..+..++..++...|++++|||++..........+..+..+.+......
T Consensus 142 ~~~~~l~~v~~lViDEah~ll~~~--~~---~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~ 216 (456)
T PRK10590 142 QNAVKLDQVEILVLDEADRMLDMG--FI---HDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTA 216 (456)
T ss_pred cCCcccccceEEEeecHHHHhccc--cH---HHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccccc
Confidence 444567889999999999998877 44 3344455667777899999999998766655555432222222222222
Q ss_pred CCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHH
Q psy7952 265 RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQE 334 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~ 334 (444)
...+...+..... ....+++..++... ...++||||+++..++.+++.|... +++.+|..+++
T Consensus 217 ~~~i~~~~~~~~~-----~~k~~~l~~l~~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 289 (456)
T PRK10590 217 SEQVTQHVHFVDK-----KRKRELLSQMIGKG--NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALA 289 (456)
T ss_pred ccceeEEEEEcCH-----HHHHHHHHHHHHcC--CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Confidence 3333333333221 12223344444332 4678999999999999999999876 88999999999
Q ss_pred HHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHH
Q psy7952 335 SFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 406 (444)
Q Consensus 335 ~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 406 (444)
.|++|+++|||||+++++|||+|++++||+|++|.+..+|+||+||+||.|..|.+++++...+...++.+.
T Consensus 290 ~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie 361 (456)
T PRK10590 290 DFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIE 361 (456)
T ss_pred HHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988877666654
No 14
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-48 Score=386.26 Aligned_cols=339 Identities=20% Similarity=0.277 Sum_probs=270.9
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc-CCccce-eE
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN-GNVRSR-NG 109 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~-~~~~~~-vl 109 (444)
...++.+++++ .||.. ||++|..+++.++.| +|++..|+||+|||++ |.+|. ++.+.. ...... +|
T Consensus 36 l~~~ll~~l~~-~gf~~-pt~IQ~~~IP~~l~g-~Dvi~~A~TGsGKT~A--------f~lP~-l~~l~~~~~~~~~~aL 103 (513)
T COG0513 36 LSPELLQALKD-LGFEE-PTPIQLAAIPLILAG-RDVLGQAQTGTGKTAA--------FLLPL-LQKILKSVERKYVSAL 103 (513)
T ss_pred CCHHHHHHHHH-cCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCChHHHH--------HHHHH-HHHHhcccccCCCceE
Confidence 46788899998 59998 999999999999999 9999999999999999 99999 555553 121112 79
Q ss_pred EEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh
Q psy7952 110 WISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR 189 (444)
Q Consensus 110 il~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~ 189 (444)
|++||++|+ .|+.+.+..+......+.+..++|+.+...+...+. .+++|+|+||+++. +.+......
T Consensus 104 il~PTRELA--~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~------~~~~ivVaTPGRll----D~i~~~~l~ 171 (513)
T COG0513 104 ILAPTRELA--VQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK------RGVDIVVATPGRLL----DLIKRGKLD 171 (513)
T ss_pred EECCCHHHH--HHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh------cCCCEEEECccHHH----HHHHcCCcc
Confidence 999999999 566777777722211388999999988876664442 36999999999986 555555677
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec--CC--CC
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT--ST--FR 265 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~--~~--~~ 265 (444)
+..+.++|+||||+|++.| |...+.. +....+.+.|.+++|||++.........++. +|..+... .. ..
T Consensus 172 l~~v~~lVlDEADrmLd~G--f~~~i~~---I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~--~p~~i~v~~~~~~~~~ 244 (513)
T COG0513 172 LSGVETLVLDEADRMLDMG--FIDDIEK---ILKALPPDRQTLLFSATMPDDIRELARRYLN--DPVEIEVSVEKLERTL 244 (513)
T ss_pred hhhcCEEEeccHhhhhcCC--CHHHHHH---HHHhCCcccEEEEEecCCCHHHHHHHHHHcc--CCcEEEEccccccccc
Confidence 8899999999999999997 7755555 4456666799999999999987776666654 55444443 22 34
Q ss_pred CCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHH
Q psy7952 266 SNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQES 335 (444)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~ 335 (444)
..+...+....... .....+..++... ...++||||+++..++.++..|... +++++|...++.
T Consensus 245 ~~i~q~~~~v~~~~----~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~ 318 (513)
T COG0513 245 KKIKQFYLEVESEE----EKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEK 318 (513)
T ss_pred cCceEEEEEeCCHH----HHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHH
Confidence 55665555554333 2334444444444 3447999999999999999999887 899999999999
Q ss_pred HhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEeccc-chhhHHHHHh
Q psy7952 336 FMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH-SKKSLEYVIK 407 (444)
Q Consensus 336 f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~ 407 (444)
|++|+.+||||||++++|||+|++++||+||.|.+.+.|+||+||+||.|..|.++.|+.+. +...+..+.+
T Consensus 319 F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~ 391 (513)
T COG0513 319 FKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEK 391 (513)
T ss_pred HHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875 6666655543
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.9e-48 Score=387.69 Aligned_cols=337 Identities=21% Similarity=0.317 Sum_probs=250.1
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc-------CCcc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN-------GNVR 105 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~-------~~~~ 105 (444)
+..+.+.++. .||.. ||++|.++++.++.| +|+++.+|||+|||++ |++|+ +..+.. .+..
T Consensus 129 ~~~l~~~L~~-~g~~~-ptpiQ~~aip~il~g-~dviv~ApTGSGKTla--------yllPi-l~~l~~~~~~~~~~~~~ 196 (518)
T PLN00206 129 PPKLLLNLET-AGYEF-PTPIQMQAIPAALSG-RSLLVSADTGSGKTAS--------FLVPI-ISRCCTIRSGHPSEQRN 196 (518)
T ss_pred CHHHHHHHHH-cCCCC-CCHHHHHHHHHHhcC-CCEEEEecCCCCccHH--------HHHHH-HHHHHhhccccccccCC
Confidence 5667888887 59997 889999999999999 9999999999999999 77776 322211 2244
Q ss_pred ceeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 185 (444)
+++||++||++|+ .|+.++++.+..+. .+++..+.|+........ .+..+++|+|+||+++. ..+..
T Consensus 197 ~~aLIL~PTreLa--~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~------~l~~~~~IiV~TPgrL~----~~l~~ 263 (518)
T PLN00206 197 PLAMVLTPTRELC--VQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLY------RIQQGVELIVGTPGRLI----DLLSK 263 (518)
T ss_pred ceEEEEeCCHHHH--HHHHHHHHHHhCCC-CceEEEEECCcchHHHHH------HhcCCCCEEEECHHHHH----HHHHc
Confidence 6789999999999 44466666662221 267777777766543322 23467899999999985 34444
Q ss_pred HHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCC
Q psy7952 186 HLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFR 265 (444)
Q Consensus 186 ~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (444)
....+.++++||+||||++.+++ |+..+..+ +..+++ .|++++|||+++......... ..++..+.......
T Consensus 264 ~~~~l~~v~~lViDEad~ml~~g--f~~~i~~i---~~~l~~-~q~l~~SATl~~~v~~l~~~~--~~~~~~i~~~~~~~ 335 (518)
T PLN00206 264 HDIELDNVSVLVLDEVDCMLERG--FRDQVMQI---FQALSQ-PQVLLFSATVSPEVEKFASSL--AKDIILISIGNPNR 335 (518)
T ss_pred CCccchheeEEEeecHHHHhhcc--hHHHHHHH---HHhCCC-CcEEEEEeeCCHHHHHHHHHh--CCCCEEEEeCCCCC
Confidence 45567889999999999999887 77655544 334444 899999999998766544433 23444444333333
Q ss_pred CC--ceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----------cCHHHHHHH
Q psy7952 266 SN--LFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-----------VNKHERSRV 332 (444)
Q Consensus 266 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-----------~~~~~r~~~ 332 (444)
++ +........ ...+...+.+.+. .......++||||+++..++.++..|... ++..+|..+
T Consensus 336 ~~~~v~q~~~~~~-~~~k~~~l~~~l~----~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~i 410 (518)
T PLN00206 336 PNKAVKQLAIWVE-TKQKKQKLFDILK----SKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREV 410 (518)
T ss_pred CCcceeEEEEecc-chhHHHHHHHHHH----hhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHH
Confidence 22 222222222 1222223333332 22223468999999999999999998753 789999999
Q ss_pred HHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 333 QESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 333 ~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
++.|++|+.+|||||+++++|||+|++++||++|+|.+..+|+||+||+||.|..|.+++|+.+++...+..+.+
T Consensus 411 l~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~ 485 (518)
T PLN00206 411 MKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVA 485 (518)
T ss_pred HHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888776666643
No 16
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.4e-48 Score=390.82 Aligned_cols=340 Identities=17% Similarity=0.236 Sum_probs=260.7
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
...++.+++.+ +||+. ||++|.++++.++.+ +++++.||||+|||.+ |.+|+ ++.+......+++||+
T Consensus 13 L~~~ll~al~~-~G~~~-ptpiQ~~ai~~ll~g-~dvl~~ApTGsGKT~a--------f~lpl-l~~l~~~~~~~~~LIL 80 (629)
T PRK11634 13 LKAPILEALND-LGYEK-PSPIQAECIPHLLNG-RDVLGMAQTGSGKTAA--------FSLPL-LHNLDPELKAPQILVL 80 (629)
T ss_pred CCHHHHHHHHH-CCCCC-CCHHHHHHHHHHHcC-CCEEEEcCCCCcHHHH--------HHHHH-HHHhhhccCCCeEEEE
Confidence 35678889987 59998 889999999999999 9999999999999999 77777 4444333344678999
Q ss_pred cchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhC
Q psy7952 112 SPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYN 191 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~ 191 (444)
+||++|+ .|+.+.+..+......+.+..++|+.....+...+ ...++|+|+||+++. +.+......+.
T Consensus 81 ~PTreLa--~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l------~~~~~IVVgTPgrl~----d~l~r~~l~l~ 148 (629)
T PRK11634 81 APTRELA--VQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL------RQGPQIVVGTPGRLL----DHLKRGTLDLS 148 (629)
T ss_pred eCcHHHH--HHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh------cCCCCEEEECHHHHH----HHHHcCCcchh
Confidence 9999999 44455566662222238888899987765443322 467899999999985 44555556678
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEE
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYD 271 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (444)
++++||+||||++++++ |.. .+..++...+...|++++|||++.........++.-+..+.+.......+.+...
T Consensus 149 ~l~~lVlDEAd~ml~~g--f~~---di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~ 223 (629)
T PRK11634 149 KLSGLVLDEADEMLRMG--FIE---DVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS 223 (629)
T ss_pred hceEEEeccHHHHhhcc--cHH---HHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEE
Confidence 99999999999998877 543 3445556677778999999999988776665554322222222222334444433
Q ss_pred EEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCc
Q psy7952 272 VIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEI 341 (444)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~ 341 (444)
+..... ..+.. .+..++... ...++||||+++..++.++..|... +++.+|..+++.|++|++
T Consensus 224 ~~~v~~-~~k~~----~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~ 296 (629)
T PRK11634 224 YWTVWG-MRKNE----ALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 (629)
T ss_pred EEEech-hhHHH----HHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCC
Confidence 333221 12222 333333332 4578999999999999999999876 889999999999999999
Q ss_pred cEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 342 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 342 ~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
+|||||+++++|||+|++++||+||.|.+...|+||+||+||.|+.|.+++++.+.+...++.+.+
T Consensus 297 ~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred CEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888777776644
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.2e-47 Score=379.18 Aligned_cols=335 Identities=22% Similarity=0.305 Sum_probs=257.7
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc----CCcccee
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN----GNVRSRN 108 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~----~~~~~~v 108 (444)
...+.+++++ +||.. ||++|.++++.+++| +++++++|||+|||++ |++|+ ++.+.. .+...++
T Consensus 9 ~~~l~~~l~~-~g~~~-p~~iQ~~ai~~~~~g-~d~l~~apTGsGKT~~--------~~lp~-l~~l~~~~~~~~~~~~~ 76 (434)
T PRK11192 9 DESLLEALQD-KGYTR-PTAIQAEAIPPALDG-RDVLGSAPTGTGKTAA--------FLLPA-LQHLLDFPRRKSGPPRI 76 (434)
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCChHHHH--------HHHHH-HHHHhhccccCCCCceE
Confidence 4577888888 59998 889999999999999 9999999999999999 66666 333321 1223578
Q ss_pred EEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 109 GWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 109 lil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
||++||++|+ .|+.+++..+ ..+ +++..++|+.........+ .++++|+|+||++|. +.+...
T Consensus 77 lil~Pt~eLa--~Q~~~~~~~l~~~~~---~~v~~~~gg~~~~~~~~~l------~~~~~IlV~Tp~rl~----~~~~~~ 141 (434)
T PRK11192 77 LILTPTRELA--MQVADQARELAKHTH---LDIATITGGVAYMNHAEVF------SENQDIVVATPGRLL----QYIKEE 141 (434)
T ss_pred EEECCcHHHH--HHHHHHHHHHHccCC---cEEEEEECCCCHHHHHHHh------cCCCCEEEEChHHHH----HHHHcC
Confidence 9999999999 4445566666 345 8899999998877665444 457899999999985 444444
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCC--C
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST--F 264 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~--~ 264 (444)
.....++++||+||||++.+++ |...+..+ ....+...|++++|||++......+...+ +..+..+..... .
T Consensus 142 ~~~~~~v~~lViDEah~~l~~~--~~~~~~~i---~~~~~~~~q~~~~SAT~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 215 (434)
T PRK11192 142 NFDCRAVETLILDEADRMLDMG--FAQDIETI---AAETRWRKQTLLFSATLEGDAVQDFAERL-LNDPVEVEAEPSRRE 215 (434)
T ss_pred CcCcccCCEEEEECHHHHhCCC--cHHHHHHH---HHhCccccEEEEEEeecCHHHHHHHHHHH-ccCCEEEEecCCccc
Confidence 4456789999999999999877 66555444 44455567899999999876555665554 344544433322 2
Q ss_pred CCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHH
Q psy7952 265 RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQE 334 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~ 334 (444)
+..+...+..... .......+..++... ...++||||+++++++.++..|... ++..+|..+++
T Consensus 216 ~~~i~~~~~~~~~----~~~k~~~l~~l~~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~ 289 (434)
T PRK11192 216 RKKIHQWYYRADD----LEHKTALLCHLLKQP--EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIK 289 (434)
T ss_pred ccCceEEEEEeCC----HHHHHHHHHHHHhcC--CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 2333333332222 223344555555432 4679999999999999999999876 88999999999
Q ss_pred HHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHH
Q psy7952 335 SFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 406 (444)
Q Consensus 335 ~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 406 (444)
.|++|+++|||||+++++|+|+|++++||++|+|.|...|+||+||+||.|..|.+++++...+...+..+.
T Consensus 290 ~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 290 RLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred HHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988887766654
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.6e-47 Score=383.85 Aligned_cols=333 Identities=18% Similarity=0.263 Sum_probs=251.3
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC-------Ccc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG-------NVR 105 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~-------~~~ 105 (444)
...+.++|.+ +||+. ||++|.++++.+++| +|+++.+|||+|||++ |++|+ ++.+... ...
T Consensus 17 ~~~l~~~L~~-~g~~~-ptpiQ~~~ip~~l~G-~Dvi~~ApTGSGKTla--------fllpi-l~~l~~~~~~~~~~~~~ 84 (572)
T PRK04537 17 HPALLAGLES-AGFTR-CTPIQALTLPVALPG-GDVAGQAQTGTGKTLA--------FLVAV-MNRLLSRPALADRKPED 84 (572)
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEEcCCCCcHHHH--------HHHHH-HHHHHhcccccccccCC
Confidence 4568888887 59998 889999999999999 9999999999999999 66666 3333221 123
Q ss_pred ceeEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYL 183 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~ 183 (444)
+++||++||++|+ .|+.+.+..+ ..+ +++..++|+.........+ ..+++|+|+||++|. ..+
T Consensus 85 ~raLIl~PTreLa--~Qi~~~~~~l~~~~~---i~v~~l~Gg~~~~~q~~~l------~~~~dIiV~TP~rL~----~~l 149 (572)
T PRK04537 85 PRALILAPTRELA--IQIHKDAVKFGADLG---LRFALVYGGVDYDKQRELL------QQGVDVIIATPGRLI----DYV 149 (572)
T ss_pred ceEEEEeCcHHHH--HHHHHHHHHHhccCC---ceEEEEECCCCHHHHHHHH------hCCCCEEEECHHHHH----HHH
Confidence 6889999999999 3334555555 344 8899999998876655444 357899999999985 322
Q ss_pred HHH-HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCC--CCcEEEEeccCCcchHHHHHHHhcCCCCeEEEe
Q psy7952 184 LQH-LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGN--SIPIIALTATAEPSVKQDIISVLKFNKPYKVFK 260 (444)
Q Consensus 184 ~~~-~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~ 260 (444)
... ...+..+++||+||+|++.+++ |...+. .++..++. ..|++++|||++..........+. .+..+..
T Consensus 150 ~~~~~~~l~~v~~lViDEAh~lld~g--f~~~i~---~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~--~p~~i~v 222 (572)
T PRK04537 150 KQHKVVSLHACEICVLDEADRMFDLG--FIKDIR---FLLRRMPERGTRQTLLFSATLSHRVLELAYEHMN--EPEKLVV 222 (572)
T ss_pred HhccccchhheeeeEecCHHHHhhcc--hHHHHH---HHHHhcccccCceEEEEeCCccHHHHHHHHHHhc--CCcEEEe
Confidence 222 3456788999999999998877 554443 44444543 478999999999887776666554 3333322
Q ss_pred c--CCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHH
Q psy7952 261 T--STFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHE 328 (444)
Q Consensus 261 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~ 328 (444)
. ......+...+.... ...+ ...+..++... .+.++||||++++.++.+++.|... ++..+
T Consensus 223 ~~~~~~~~~i~q~~~~~~-~~~k----~~~L~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~e 295 (572)
T PRK04537 223 ETETITAARVRQRIYFPA-DEEK----QTLLLGLLSRS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKK 295 (572)
T ss_pred ccccccccceeEEEEecC-HHHH----HHHHHHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 2 222222322222221 1222 23333333332 4779999999999999999999876 88999
Q ss_pred HHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHH
Q psy7952 329 RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 406 (444)
Q Consensus 329 r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 406 (444)
|..+++.|++|+.+|||||+++++|||+|++++||+||.|.+...|+||+||+||.|..|.+++|+.+.+...+..+.
T Consensus 296 R~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~ 373 (572)
T PRK04537 296 RESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIE 373 (572)
T ss_pred HHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987776666553
No 19
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.7e-47 Score=372.94 Aligned_cols=367 Identities=17% Similarity=0.254 Sum_probs=257.5
Q ss_pred CCCCCCcccccccCCCCCCCCCcCC----CCCCCCCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCC
Q psy7952 1 MAEGESKDASSAVGKSSSLTGNQQD----RKGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGA 76 (444)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGs 76 (444)
||.+|..+.+.-.......+..... +..-.+ ...+.+++.. +|+.. |+++|.++++.++++ +++++.+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-~~~~~~~l~~-~~~~~-~~~~Q~~ai~~i~~~-~d~ii~apTGs 76 (401)
T PTZ00424 1 MATSEQKNQSEQVASTGTIESNYDEIVDSFDALKL-NEDLLRGIYS-YGFEK-PSAIQQRGIKPILDG-YDTIGQAQSGT 76 (401)
T ss_pred CCchhhccchhhcccccccccccccccCCHhhCCC-CHHHHHHHHH-cCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCC
Confidence 6666666665544444333222211 111122 4556677776 69997 789999999999999 99999999999
Q ss_pred cccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHH
Q psy7952 77 VSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILE 156 (444)
Q Consensus 77 GKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 156 (444)
|||++ |.+|+ +..+.......++||++|+++|+ .|+.+.+..+.. ...+.+....|+.........
T Consensus 77 GKT~~--------~~l~~-l~~~~~~~~~~~~lil~Pt~~L~--~Q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~-- 142 (401)
T PTZ00424 77 GKTAT--------FVIAA-LQLIDYDLNACQALILAPTRELA--QQIQKVVLALGD-YLKVRCHACVGGTVVRDDINK-- 142 (401)
T ss_pred hHHHH--------HHHHH-HHHhcCCCCCceEEEECCCHHHH--HHHHHHHHHHhh-hcCceEEEEECCcCHHHHHHH--
Confidence 99999 66665 33333223345789999999999 222333333311 112666667777654432222
Q ss_pred HHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEec
Q psy7952 157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTA 236 (444)
Q Consensus 157 ~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSA 236 (444)
...+++|+|+||+++. ..+......+.++++||+||+|++.+++ +... +..++...+.+.|++++||
T Consensus 143 ----~~~~~~Ivv~Tp~~l~----~~l~~~~~~l~~i~lvViDEah~~~~~~--~~~~---~~~i~~~~~~~~~~i~~SA 209 (401)
T PTZ00424 143 ----LKAGVHMVVGTPGRVY----DMIDKRHLRVDDLKLFILDEADEMLSRG--FKGQ---IYDVFKKLPPDVQVALFSA 209 (401)
T ss_pred ----HcCCCCEEEECcHHHH----HHHHhCCcccccccEEEEecHHHHHhcc--hHHH---HHHHHhhCCCCcEEEEEEe
Confidence 2456799999999984 4444445567899999999999998766 4433 3344556667799999999
Q ss_pred cCCcchHHHHHHHhcCCCCeEEEecC--CCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHH
Q psy7952 237 TAEPSVKQDIISVLKFNKPYKVFKTS--TFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTT 314 (444)
Q Consensus 237 T~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~ 314 (444)
|+++........++. .+..+.... .....+...+.......... ..+..+.... ...++||||+++++++
T Consensus 210 T~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~--~~~~~ivF~~t~~~~~ 281 (401)
T PTZ00424 210 TMPNEILELTTKFMR--DPKRILVKKDELTLEGIRQFYVAVEKEEWKF----DTLCDLYETL--TITQAIIYCNTRRKVD 281 (401)
T ss_pred cCCHHHHHHHHHHcC--CCEEEEeCCCCcccCCceEEEEecChHHHHH----HHHHHHHHhc--CCCeEEEEecCcHHHH
Confidence 999876665555443 333322221 11222222222222212222 2233333222 4578999999999999
Q ss_pred HHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCC
Q psy7952 315 DLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384 (444)
Q Consensus 315 ~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 384 (444)
.++..|... ++..+|..+++.|++|+++|||||+++++|+|+|++++||++|+|.|...|+||+||+||.
T Consensus 282 ~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 361 (401)
T PTZ00424 282 YLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRF 361 (401)
T ss_pred HHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccC
Confidence 999999876 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEecccchhhHHHHH
Q psy7952 385 GLQSYCRIYHSEHSKKSLEYVI 406 (444)
Q Consensus 385 g~~g~~~~~~~~~~~~~~~~~~ 406 (444)
|+.|.|++++.+++...+..+.
T Consensus 362 g~~G~~i~l~~~~~~~~~~~~e 383 (401)
T PTZ00424 362 GRKGVAINFVTPDDIEQLKEIE 383 (401)
T ss_pred CCCceEEEEEcHHHHHHHHHHH
Confidence 9999999999988877776663
No 20
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.6e-47 Score=377.46 Aligned_cols=335 Identities=19% Similarity=0.244 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC-------cc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN-------VR 105 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~-------~~ 105 (444)
...+.+++.+ +|+.. +|++|.++++.+++| +|+++.+|||+|||++ |++|. ++.+.... ..
T Consensus 95 ~~~l~~~l~~-~g~~~-~~~iQ~~ai~~~~~G-~dvi~~apTGSGKTla--------y~lpi-l~~l~~~~~~~~~~~~~ 162 (475)
T PRK01297 95 APELMHAIHD-LGFPY-CTPIQAQVLGYTLAG-HDAIGRAQTGTGKTAA--------FLISI-INQLLQTPPPKERYMGE 162 (475)
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCChHHHH--------HHHHH-HHHHHhcCcccccccCC
Confidence 5678889988 69998 779999999999999 9999999999999999 88887 44333221 13
Q ss_pred ceeEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYL 183 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~ 183 (444)
+++||++||++|+ +|+.+.+..+ ..+ +++..++|+.........+. .+.++|+|+||++|. ...
T Consensus 163 ~~aLil~PtreLa--~Q~~~~~~~l~~~~~---~~v~~~~gg~~~~~~~~~~~-----~~~~~Iiv~TP~~Ll----~~~ 228 (475)
T PRK01297 163 PRALIIAPTRELV--VQIAKDAAALTKYTG---LNVMTFVGGMDFDKQLKQLE-----ARFCDILVATPGRLL----DFN 228 (475)
T ss_pred ceEEEEeCcHHHH--HHHHHHHHHhhccCC---CEEEEEEccCChHHHHHHHh-----CCCCCEEEECHHHHH----HHH
Confidence 5789999999999 3334444455 334 78888888876654433321 357899999999984 323
Q ss_pred HHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecC-
Q psy7952 184 LQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTS- 262 (444)
Q Consensus 184 ~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~- 262 (444)
......+.++++|||||+|++.+++ +.+.+..+...... ..+.+++++|||++....+....++. .+..+....
T Consensus 229 ~~~~~~l~~l~~lViDEah~l~~~~--~~~~l~~i~~~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~v~~~~~ 303 (475)
T PRK01297 229 QRGEVHLDMVEVMVLDEADRMLDMG--FIPQVRQIIRQTPR-KEERQTLLFSATFTDDVMNLAKQWTT--DPAIVEIEPE 303 (475)
T ss_pred HcCCcccccCceEEechHHHHHhcc--cHHHHHHHHHhCCC-CCCceEEEEEeecCHHHHHHHHHhcc--CCEEEEeccC
Confidence 3334557789999999999998776 65555554433221 12468999999998877766555543 333332221
Q ss_pred -CCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHH
Q psy7952 263 -TFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSR 331 (444)
Q Consensus 263 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~ 331 (444)
.....+...+.... ...+. ..+..++... ...++||||+++++++.++..|... ++.++|..
T Consensus 304 ~~~~~~~~~~~~~~~-~~~k~----~~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 376 (475)
T PRK01297 304 NVASDTVEQHVYAVA-GSDKY----KLLYNLVTQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIK 376 (475)
T ss_pred cCCCCcccEEEEEec-chhHH----HHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 11222222222221 12222 3333333332 4578999999999999999999765 78999999
Q ss_pred HHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHH
Q psy7952 332 VQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405 (444)
Q Consensus 332 ~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 405 (444)
+++.|++|++++||||+++++|||+|++++||++++|.|..+|+||+||+||.|..|.+++|+.++|...+..+
T Consensus 377 ~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~ 450 (475)
T PRK01297 377 TLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEI 450 (475)
T ss_pred HHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998776554444
No 21
>KOG0338|consensus
Probab=100.00 E-value=2e-47 Score=353.02 Aligned_cols=337 Identities=22% Similarity=0.305 Sum_probs=269.5
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC-C--ccceeE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG-N--VRSRNG 109 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~-~--~~~~vl 109 (444)
...+.+++.. +||.. |||+|..+++-.+-| +|+..+|.||||||.+ |++|+ +..+.-. . ...|||
T Consensus 189 SRPlLka~~~-lGy~~-PTpIQ~a~IPvallg-kDIca~A~TGsGKTAA--------F~lPi-LERLlYrPk~~~~TRVL 256 (691)
T KOG0338|consen 189 SRPLLKACST-LGYKK-PTPIQVATIPVALLG-KDICACAATGSGKTAA--------FALPI-LERLLYRPKKVAATRVL 256 (691)
T ss_pred chHHHHHHHh-cCCCC-CCchhhhcccHHhhc-chhhheecccCCchhh--------hHHHH-HHHHhcCcccCcceeEE
Confidence 3456677776 49997 999999999999999 9999999999999999 99999 4444433 2 335899
Q ss_pred EEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH-
Q psy7952 110 WISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH- 186 (444)
Q Consensus 110 il~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~- 186 (444)
|+|||++|+ +||.+..+++ ... +.++...|+.+...+...+ ...+||+|+||++|. +.+.+.
T Consensus 257 VL~PTRELa--iQv~sV~~qlaqFt~---I~~~L~vGGL~lk~QE~~L------Rs~PDIVIATPGRlI----DHlrNs~ 321 (691)
T KOG0338|consen 257 VLVPTRELA--IQVHSVTKQLAQFTD---ITVGLAVGGLDLKAQEAVL------RSRPDIVIATPGRLI----DHLRNSP 321 (691)
T ss_pred EEeccHHHH--HHHHHHHHHHHhhcc---ceeeeeecCccHHHHHHHH------hhCCCEEEecchhHH----HHhccCC
Confidence 999999999 7778888888 334 9999999999999888777 468999999999974 222222
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCC
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRS 266 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 266 (444)
...+.++..+|+|||++|++.| |...+..| .+.++++.|.+++|||+...+.+.+ .+.+.+|+.++..+....
T Consensus 322 sf~ldsiEVLvlDEADRMLeeg--FademnEi---i~lcpk~RQTmLFSATMteeVkdL~--slSL~kPvrifvd~~~~~ 394 (691)
T KOG0338|consen 322 SFNLDSIEVLVLDEADRMLEEG--FADEMNEI---IRLCPKNRQTMLFSATMTEEVKDLA--SLSLNKPVRIFVDPNKDT 394 (691)
T ss_pred CccccceeEEEechHHHHHHHH--HHHHHHHH---HHhccccccceeehhhhHHHHHHHH--HhhcCCCeEEEeCCcccc
Confidence 2335688999999999999988 77655554 4567888999999999999887643 456789998887765433
Q ss_pred Cc--e--EEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHH----------HhhcCHHHHHHH
Q psy7952 267 NL--F--YDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADAL----------RRKVNKHERSRV 332 (444)
Q Consensus 267 ~~--~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L----------~~~~~~~~r~~~ 332 (444)
.. . +..+...........+..++... -...+|||+.+++.|.++.-.| ...+++++|...
T Consensus 395 a~~LtQEFiRIR~~re~dRea~l~~l~~rt------f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRles 468 (691)
T KOG0338|consen 395 APKLTQEFIRIRPKREGDREAMLASLITRT------FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLES 468 (691)
T ss_pred chhhhHHHheeccccccccHHHHHHHHHHh------cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHH
Confidence 22 1 11122222333334444444443 2567899999999999875444 333899999999
Q ss_pred HHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhc
Q psy7952 333 QESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTD 409 (444)
Q Consensus 333 ~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 409 (444)
+++|+.+++.||||||++++|+||+.+.+||+|.+|.+...|+||+||+.|.|+.|+.++++-..+...++.+++++
T Consensus 469 L~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 469 LEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred HHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998874
No 22
>KOG0333|consensus
Probab=100.00 E-value=1.3e-45 Score=342.17 Aligned_cols=360 Identities=20% Similarity=0.251 Sum_probs=274.1
Q ss_pred CCCCCCcCCCCCCCCCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccce-EEeCCC
Q psy7952 17 SSLTGNQQDRKGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSR-VRIPPG 95 (444)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~-~~~~~~ 95 (444)
+-++...-.|+...++.+-+. .++.. |+.. ||++|..+++-.+++ +|+|..+.||||||.+-+++++.+ -.+|.
T Consensus 238 ~~lpnplrnwEE~~~P~e~l~-~I~~~-~y~e-ptpIqR~aipl~lQ~-rD~igvaETgsGktaaf~ipLl~~IsslP~- 312 (673)
T KOG0333|consen 238 GRLPNPLRNWEESGFPLELLS-VIKKP-GYKE-PTPIQRQAIPLGLQN-RDPIGVAETGSGKTAAFLIPLLIWISSLPP- 312 (673)
T ss_pred CCCCccccChhhcCCCHHHHH-HHHhc-CCCC-CchHHHhhccchhcc-CCeeeEEeccCCccccchhhHHHHHHcCCC-
Confidence 345555566776666655544 77764 9987 999999999999998 999999999999999933333221 11222
Q ss_pred ccccccCCccceeEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCC
Q psy7952 96 ADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPE 173 (444)
Q Consensus 96 ~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe 173 (444)
+..+....-.|+++++.||++|+ +||++....+ ..+ +++..+.|+....++.-.+ ..+|+|+|+||+
T Consensus 313 ~~~~en~~~gpyaiilaptReLa--qqIeeEt~kf~~~lg---~r~vsvigg~s~EEq~fql------s~gceiviatPg 381 (673)
T KOG0333|consen 313 MARLENNIEGPYAIILAPTRELA--QQIEEETNKFGKPLG---IRTVSVIGGLSFEEQGFQL------SMGCEIVIATPG 381 (673)
T ss_pred cchhhhcccCceeeeechHHHHH--HHHHHHHHHhccccc---ceEEEEecccchhhhhhhh------hccceeeecCch
Confidence 11122233447889999999999 5555555556 445 8999999999887653333 468999999999
Q ss_pred ccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhh----------------------CCCCcE
Q psy7952 174 RAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFT----------------------GNSIPI 231 (444)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~ 231 (444)
+|. ..+-+....+++..++|+||+++|.+.| |.+.+..+....... ....|.
T Consensus 382 rLi----d~Lenr~lvl~qctyvvldeadrmiDmg--fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT 455 (673)
T KOG0333|consen 382 RLI----DSLENRYLVLNQCTYVVLDEADRMIDMG--FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQT 455 (673)
T ss_pred HHH----HHHHHHHHHhccCceEeccchhhhhccc--ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEE
Confidence 996 6667777788999999999999999988 666666554322111 122578
Q ss_pred EEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCC--ceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecc
Q psy7952 232 IALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSN--LFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRT 309 (444)
Q Consensus 232 v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s 309 (444)
+++|||+++...+....++ .+|+.+......++. +...+.... .+.+...+.+.+.. + ...++|||+|+
T Consensus 456 ~mftatm~p~verlar~yl--r~pv~vtig~~gk~~~rveQ~v~m~~-ed~k~kkL~eil~~----~--~~ppiIIFvN~ 526 (673)
T KOG0333|consen 456 VMFTATMPPAVERLARSYL--RRPVVVTIGSAGKPTPRVEQKVEMVS-EDEKRKKLIEILES----N--FDPPIIIFVNT 526 (673)
T ss_pred EEEecCCChHHHHHHHHHh--hCCeEEEeccCCCCccchheEEEEec-chHHHHHHHHHHHh----C--CCCCEEEEEec
Confidence 9999999999988777775 577777666555443 333333332 23334444444444 3 47899999999
Q ss_pred cchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhc
Q psy7952 310 REHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESG 379 (444)
Q Consensus 310 ~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~G 379 (444)
++.|+.+++.|.+. .++++|...+..|+.|...|||||+++++|||||+|.+||+||+++|+.+|+||+|
T Consensus 527 kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIG 606 (673)
T KOG0333|consen 527 KKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIG 606 (673)
T ss_pred hhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhc
Confidence 99999999999988 77899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 380 RAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 380 R~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
|+||.|+.|.++.|+.+.+...+..|..
T Consensus 607 RTgRAGk~GtaiSflt~~dt~v~ydLkq 634 (673)
T KOG0333|consen 607 RTGRAGKSGTAISFLTPADTAVFYDLKQ 634 (673)
T ss_pred cccccccCceeEEEeccchhHHHHHHHH
Confidence 9999999999999999999766555543
No 23
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.9e-45 Score=378.01 Aligned_cols=332 Identities=17% Similarity=0.230 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
+..+.+++++ .|++. |+++|.++++.+++| +|+++.+|||||||++ |.+|+ ++.+.. +...++||++
T Consensus 22 ~~~l~~~L~~-~g~~~-p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla--------~~LPi-L~~l~~-~~~~~aL~l~ 88 (742)
T TIGR03817 22 HPDVVAALEA-AGIHR-PWQHQARAAELAHAG-RHVVVATGTASGKSLA--------YQLPV-LSALAD-DPRATALYLA 88 (742)
T ss_pred CHHHHHHHHH-cCCCc-CCHHHHHHHHHHHCC-CCEEEECCCCCcHHHH--------HHHHH-HHHHhh-CCCcEEEEEc
Confidence 5678899987 59997 789999999999999 9999999999999999 88888 554543 2345789999
Q ss_pred chhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhC
Q psy7952 113 PILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYN 191 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~ 191 (444)
||++|+ .|+...+ .++...+++..++|+.....+..+ ..+++|+|+||+++..............+.
T Consensus 89 PtraLa-----~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i-------~~~~~IivtTPd~L~~~~L~~~~~~~~~l~ 156 (742)
T TIGR03817 89 PTKALA-----ADQLRAVRELTLRGVRPATYDGDTPTEERRWA-------REHARYVLTNPDMLHRGILPSHARWARFLR 156 (742)
T ss_pred ChHHHH-----HHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH-------hcCCCEEEEChHHHHHhhccchhHHHHHHh
Confidence 999999 6666666 333334888889998875543222 246899999999985211111111123467
Q ss_pred CccEEEEeccccccc-cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCC-CCCCce
Q psy7952 192 KLAYIVVDEAHCVSE-WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST-FRSNLF 269 (444)
Q Consensus 192 ~~~~iViDE~H~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~ 269 (444)
++++||+||+|.|.+ .|.++...+..+.++....+.++|++++|||+++... ....+++ .+..+...+. ......
T Consensus 157 ~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g--~~~~~i~~~~~~~~~~~ 233 (742)
T TIGR03817 157 RLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIG--APVVAVTEDGSPRGART 233 (742)
T ss_pred cCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcC--CCeEEECCCCCCcCceE
Confidence 899999999999865 3334555566666666666777899999999988643 4444443 3433332221 122222
Q ss_pred EEEEEccc-----------chhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh---------------
Q psy7952 270 YDVIFDDL-----------LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--------------- 323 (444)
Q Consensus 270 ~~~~~~~~-----------~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~--------------- 323 (444)
+....... ...........+..++. .+.++||||+|++.++.++..|+..
T Consensus 234 ~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~ 309 (742)
T TIGR03817 234 VALWEPPLTELTGENGAPVRRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAY 309 (742)
T ss_pred EEEecCCccccccccccccccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhe
Confidence 22211110 01112233444444443 3679999999999999999887642
Q ss_pred ---cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecc
Q psy7952 324 ---VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 396 (444)
Q Consensus 324 ---~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 396 (444)
+.+++|..++++|++|++++||||+++++|||+|++++||++|.|.+..+|+||+||+||.|+.|.++++...
T Consensus 310 hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 310 RAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred ecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 7789999999999999999999999999999999999999999999999999999999999999999988863
No 24
>KOG0351|consensus
Probab=100.00 E-value=5e-45 Score=374.28 Aligned_cols=369 Identities=38% Similarity=0.611 Sum_probs=322.3
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
++.+....++..||+..|| +-|.+++..++.| +++++.+|||.||+++ |++|+ +...+.+ |||
T Consensus 248 ~t~~~~~~l~~~Fg~~~FR-~~Q~eaI~~~l~G-kd~fvlmpTG~GKSLC--------YQlPA----~l~~git---vVI 310 (941)
T KOG0351|consen 248 ETKELELLLKEVFGHKGFR-PNQLEAINATLSG-KDCFVLMPTGGGKSLC--------YQLPA----LLLGGVT---VVI 310 (941)
T ss_pred cchHHHHHHHHHhccccCC-hhHHHHHHHHHcC-CceEEEeecCCceeeE--------eeccc----cccCCce---EEe
Confidence 3456889999999999999 7999999999999 9999999999999999 99999 9999999 999
Q ss_pred cchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCcccccc-HHHHHHHHHh
Q psy7952 112 SPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTES-FHYLLQHLVR 189 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~-~~~~~~~~~~ 189 (444)
.|..+|+ .+|+..+ ..+ |....++++....++...++.+......++|++.|||++.... +...+.....
T Consensus 311 SPL~SLm-----~DQv~~L~~~~---I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~ 382 (941)
T KOG0351|consen 311 SPLISLM-----QDQVTHLSKKG---IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYA 382 (941)
T ss_pred ccHHHHH-----HHHHHhhhhcC---cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccC
Confidence 9999999 9999999 888 9999999999999999999998865568999999999997533 2223333333
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCce
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 269 (444)
.+.+.++||||||+.+.|||+||+.|..+..++..++. .+++++|||.+..+..++.+.+++.++. ++..+..|+|+.
T Consensus 383 ~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~ 460 (941)
T KOG0351|consen 383 RGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLK 460 (941)
T ss_pred CCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCce
Confidence 34489999999999999999999999999999999888 9999999999999999999999999884 778889999999
Q ss_pred EEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcC
Q psy7952 270 YDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRG 339 (444)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g 339 (444)
|.+........ ...+...+.. .....++||||.++.+|+.++..|++. |.+.+|..+.+.|..+
T Consensus 461 yeV~~k~~~~~-~~~~~~~~~~-----~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~ 534 (941)
T KOG0351|consen 461 YEVSPKTDKDA-LLDILEESKL-----RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD 534 (941)
T ss_pred EEEEeccCccc-hHHHHHHhhh-----cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC
Confidence 99998764222 1122222222 226889999999999999999999887 9999999999999999
Q ss_pred CccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhccchhHHHHH-
Q psy7952 340 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLE- 418 (444)
Q Consensus 340 ~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 418 (444)
+++|+|||=+++.|||-|+|+.||||+.|+|++.|.|-+|||||+|...+|++|+...|..+++.++.++ ..+..-..
T Consensus 535 ~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~-~~~~~~~~~ 613 (941)
T KOG0351|consen 535 KIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG-NRLSGVKKF 613 (941)
T ss_pred CCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc-ccccchhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888 33333222
Q ss_pred HHHhhHHHHHHHhhhc
Q psy7952 419 LKFKNYLSMLEYCEQG 434 (444)
Q Consensus 419 ~~~~~~~~~~~~~~~~ 434 (444)
....++..++.||++.
T Consensus 614 ~~~~~l~~~~~yCen~ 629 (941)
T KOG0351|consen 614 TRLLELVQVVTYCENE 629 (941)
T ss_pred cchhhHHHHHHhhcCc
Confidence 5678889999999853
No 25
>KOG0336|consensus
Probab=100.00 E-value=1.2e-45 Score=332.74 Aligned_cols=337 Identities=19% Similarity=0.248 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc-----CCccce
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN-----GNVRSR 107 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~-----~~~~~~ 107 (444)
-.++++.+++. ||.. |||+|.+||+-+++| .|++.+|.||+|||++ |++|..++.... ....+.
T Consensus 228 ~pevmenIkK~-GFqK-PtPIqSQaWPI~LQG-~DliGVAQTgtgKtL~--------~L~pg~ihi~aqp~~~~qr~~p~ 296 (629)
T KOG0336|consen 228 YPEVMENIKKT-GFQK-PTPIQSQAWPILLQG-IDLIGVAQTGTGKTLA--------FLLPGFIHIDAQPKRREQRNGPG 296 (629)
T ss_pred hHHHHHHHHhc-cCCC-CCcchhcccceeecC-cceEEEEecCCCcCHH--------HhccceeeeeccchhhhccCCCc
Confidence 45677777774 9998 999999999999999 9999999999999999 888884443332 235578
Q ss_pred eEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
+|++.||++|++| +.-.+... ..+ .+...+.|+....++.+.+ ..+.+|+++||++|. +....+
T Consensus 297 ~lvl~ptreLalq--ie~e~~kysyng---~ksvc~ygggnR~eqie~l------krgveiiiatPgrln----dL~~~n 361 (629)
T KOG0336|consen 297 VLVLTPTRELALQ--IEGEVKKYSYNG---LKSVCVYGGGNRNEQIEDL------KRGVEIIIATPGRLN----DLQMDN 361 (629)
T ss_pred eEEEeccHHHHHH--HHhHHhHhhhcC---cceEEEecCCCchhHHHHH------hcCceEEeeCCchHh----hhhhcC
Confidence 9999999999933 34444444 455 7777888887776655444 579999999999985 555667
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCC
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRS 266 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 266 (444)
..++..+.|+|+|||++|++.| |.+....| +-...++.+.++.|||+++.+.+....++ .+++.+...+....
T Consensus 362 ~i~l~siTYlVlDEADrMLDMg--FEpqIrki---lldiRPDRqtvmTSATWP~~VrrLa~sY~--Kep~~v~vGsLdL~ 434 (629)
T KOG0336|consen 362 VINLASITYLVLDEADRMLDMG--FEPQIRKI---LLDIRPDRQTVMTSATWPEGVRRLAQSYL--KEPMIVYVGSLDLV 434 (629)
T ss_pred eeeeeeeEEEEecchhhhhccc--ccHHHHHH---hhhcCCcceeeeecccCchHHHHHHHHhh--hCceEEEeccccee
Confidence 7788999999999999999999 77766554 33445569999999999999988666664 57777766654432
Q ss_pred Cce--EEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHH
Q psy7952 267 NLF--YDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQE 334 (444)
Q Consensus 267 ~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~ 334 (444)
... -+.........+. +.+..++.. ...+.++||||.++..|+.+...|.-. -.+.+|+..++
T Consensus 435 a~~sVkQ~i~v~~d~~k~----~~~~~f~~~-ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~ 509 (629)
T KOG0336|consen 435 AVKSVKQNIIVTTDSEKL----EIVQFFVAN-MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALE 509 (629)
T ss_pred eeeeeeeeEEecccHHHH----HHHHHHHHh-cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHH
Confidence 211 1112222233333 333333332 337889999999999998887666444 66789999999
Q ss_pred HHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 335 SFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 335 ~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
.|++|+++|||||+.+++|+|+|++.||++||+|.++++|+||+||.||.|+.|..+.++...|......|++
T Consensus 510 ~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 510 DFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred hhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888765
No 26
>KOG0340|consensus
Probab=100.00 E-value=2.3e-45 Score=325.64 Aligned_cols=339 Identities=18% Similarity=0.212 Sum_probs=260.7
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
..++.+.++. +|+.. |||+|..++++++.| +|++=+|.||||||.+ |.+|+ ++.+.....+-.++|++
T Consensus 15 ~~Wlve~l~~-l~i~~-pTpiQ~~cIpkILeG-rdcig~AkTGsGKT~A--------FaLPi-l~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 15 SPWLVEQLKA-LGIKK-PTPIQQACIPKILEG-RDCIGCAKTGSGKTAA--------FALPI-LNRLSEDPYGIFALVLT 82 (442)
T ss_pred cHHHHHHHHH-hcCCC-CCchHhhhhHHHhcc-cccccccccCCCcchh--------hhHHH-HHhhccCCCcceEEEec
Confidence 5678889998 59998 999999999999999 9999999999999999 99999 77777777777889999
Q ss_pred chhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh
Q psy7952 113 PILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY 190 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~ 190 (444)
||++|++ |+.+|+..+ ..+ +++.++.|+++.-..... +..++|++|+||+++....-...-.....+
T Consensus 83 PTrELA~--QiaEQF~alGk~l~---lK~~vivGG~d~i~qa~~------L~~rPHvVvatPGRlad~l~sn~~~~~~~~ 151 (442)
T KOG0340|consen 83 PTRELAL--QIAEQFIALGKLLN---LKVSVIVGGTDMIMQAAI------LSDRPHVVVATPGRLADHLSSNLGVCSWIF 151 (442)
T ss_pred chHHHHH--HHHHHHHHhccccc---ceEEEEEccHHHhhhhhh------cccCCCeEecCccccccccccCCccchhhh
Confidence 9999994 447777777 667 999999999876544333 367999999999999732111100112235
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCC----CeEEEecCC--C
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNK----PYKVFKTST--F 264 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~----~~~~~~~~~--~ 264 (444)
.++.++|+|||+++.+.. |... +.......|...|.+++|||+.....+ ..+.+. .+.+...+. .
T Consensus 152 ~rlkflVlDEADrvL~~~--f~d~---L~~i~e~lP~~RQtLlfSATitd~i~q----l~~~~i~k~~a~~~e~~~~vst 222 (442)
T KOG0340|consen 152 QRLKFLVLDEADRVLAGC--FPDI---LEGIEECLPKPRQTLLFSATITDTIKQ----LFGCPITKSIAFELEVIDGVST 222 (442)
T ss_pred hceeeEEecchhhhhccc--hhhH---HhhhhccCCCccceEEEEeehhhHHHH----hhcCCcccccceEEeccCCCCc
Confidence 689999999999998765 5544 444555677767999999999776644 333332 222222111 1
Q ss_pred CCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHH
Q psy7952 265 RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQE 334 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~ 334 (444)
.......+.... ...+..++...+...-.+ .++.++||+++..+|+.++..|+.. |++.+|...+.
T Consensus 223 vetL~q~yI~~~-~~vkdaYLv~~Lr~~~~~---~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLs 298 (442)
T KOG0340|consen 223 VETLYQGYILVS-IDVKDAYLVHLLRDFENK---ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALS 298 (442)
T ss_pred hhhhhhheeecc-hhhhHHHHHHHHhhhhhc---cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHH
Confidence 111111222211 122333334444333221 5789999999999999999999877 99999999999
Q ss_pred HHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 335 SFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 335 ~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
+|+++..++|||||++++|+|||.++.||++|.|.++.+|+||+||..|.|+.|.++.++...|.+.+..+.+
T Consensus 299 rFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~ 371 (442)
T KOG0340|consen 299 RFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEE 371 (442)
T ss_pred HHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988777754
No 27
>KOG0342|consensus
Probab=100.00 E-value=3.8e-45 Score=337.56 Aligned_cols=343 Identities=18% Similarity=0.227 Sum_probs=262.8
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCcc----cee
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVR----SRN 108 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~----~~v 108 (444)
.....+++++ +||+. .|++|+.+++.++.| +|++..|-||+|||++ |++|+ .+.+.+.... -.+
T Consensus 90 S~~t~kAi~~-~GF~~-MT~VQ~~ti~pll~g-kDvl~~AKTGtGKTlA--------FLiPa-ie~l~k~~~~~r~~~~v 157 (543)
T KOG0342|consen 90 SPLTLKAIKE-MGFET-MTPVQQKTIPPLLEG-KDVLAAAKTGTGKTLA--------FLLPA-IELLRKLKFKPRNGTGV 157 (543)
T ss_pred CHHHHHHHHh-cCccc-hhHHHHhhcCccCCC-ccceeeeccCCCceee--------ehhHH-HHHHHhcccCCCCCeeE
Confidence 4456678887 59998 889999999999999 8999999999999999 99999 5555544322 268
Q ss_pred EEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH
Q psy7952 109 GWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV 188 (444)
Q Consensus 109 lil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~ 188 (444)
+|+||||+|++| +...++.+-...+.+.+..+.|+.......+.+ ..++.|+|+||++|. +.+.+...
T Consensus 158 lIi~PTRELA~Q--~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl------~k~~niliATPGRLl----DHlqNt~~ 225 (543)
T KOG0342|consen 158 LIICPTRELAMQ--IFAEAKELLKYHESITVGIVIGGNNFSVEADKL------VKGCNILIATPGRLL----DHLQNTSG 225 (543)
T ss_pred EEecccHHHHHH--HHHHHHHHHhhCCCcceEEEeCCccchHHHHHh------hccccEEEeCCchHH----hHhhcCCc
Confidence 999999999944 366667762222238888889888765433333 358999999999984 22222221
Q ss_pred -hhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy7952 189 -RYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSN 267 (444)
Q Consensus 189 -~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 267 (444)
.+.+.+++|+||||++++.| |+..+..|.. .++...|.+++|||.++.+.+...-.+. .++..+...+...+.
T Consensus 226 f~~r~~k~lvlDEADrlLd~G--F~~di~~Ii~---~lpk~rqt~LFSAT~~~kV~~l~~~~L~-~d~~~v~~~d~~~~~ 299 (543)
T KOG0342|consen 226 FLFRNLKCLVLDEADRLLDIG--FEEDVEQIIK---ILPKQRQTLLFSATQPSKVKDLARGALK-RDPVFVNVDDGGERE 299 (543)
T ss_pred chhhccceeEeecchhhhhcc--cHHHHHHHHH---hccccceeeEeeCCCcHHHHHHHHHhhc-CCceEeecCCCCCcc
Confidence 23456899999999999999 8866665554 5667789999999999988776555543 355555443322222
Q ss_pred ----ceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHH
Q psy7952 268 ----LFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQ 333 (444)
Q Consensus 268 ----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~ 333 (444)
+...+..... ......+..++++.. .+.++||||+|...+..+++.|+.. .++..|..+.
T Consensus 300 The~l~Qgyvv~~~-~~~f~ll~~~LKk~~-----~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~ 373 (543)
T KOG0342|consen 300 THERLEQGYVVAPS-DSRFSLLYTFLKKNI-----KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTF 373 (543)
T ss_pred hhhcccceEEeccc-cchHHHHHHHHHHhc-----CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHH
Confidence 1222222222 223444555555532 2389999999999999999999866 7888999999
Q ss_pred HHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhccc
Q psy7952 334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTS 411 (444)
Q Consensus 334 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (444)
..|+..+..||+|||++++|+|+|+|++||++|+|.+.++|+||+||+||.|+.|.+++++.+++...++++.+-++.
T Consensus 374 ~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~lpl~ 451 (543)
T KOG0342|consen 374 FEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKLPLE 451 (543)
T ss_pred HHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999864443
No 28
>KOG0353|consensus
Probab=100.00 E-value=2.2e-44 Score=322.10 Aligned_cols=386 Identities=31% Similarity=0.512 Sum_probs=328.4
Q ss_pred ccccccCCCCCCCCCcCCCCCCCCC-HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccc
Q psy7952 8 DASSAVGKSSSLTGNQQDRKGGKVS-EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSA 86 (444)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~ 86 (444)
..+++.|....++.++-.|..++++ ..+..+.|++.|.++.|| |.|..+++....| .++++..|||.||+++
T Consensus 53 ~edsdag~~~eyd~spaawdkd~fpws~e~~~ilk~~f~lekfr-plq~~ain~~ma~-ed~~lil~tgggkslc----- 125 (695)
T KOG0353|consen 53 LEDSDAGASNEYDRSPAAWDKDDFPWSDEAKDILKEQFHLEKFR-PLQLAAINATMAG-EDAFLILPTGGGKSLC----- 125 (695)
T ss_pred cccccccccccccCCccccccCCCCCchHHHHHHHHHhhHHhcC-hhHHHHhhhhhcc-CceEEEEeCCCccchh-----
Confidence 3566777777888888888887776 667788999999999988 8999999999999 9999999999999999
Q ss_pred cceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCe
Q psy7952 87 RSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRI 165 (444)
Q Consensus 87 ~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (444)
|++|+ +...|-. |++||..+|+ .+|+-.+ ..| +....++.+.+..+....-..+-......
T Consensus 126 ---yqlpa----l~adg~a---lvi~plislm-----edqil~lkqlg---i~as~lnansske~~k~v~~~i~nkdse~ 187 (695)
T KOG0353|consen 126 ---YQLPA----LCADGFA---LVICPLISLM-----EDQILQLKQLG---IDASMLNANSSKEEAKRVEAAITNKDSEF 187 (695)
T ss_pred ---hhhhH----HhcCCce---EeechhHHHH-----HHHHHHHHHhC---cchhhccCcccHHHHHHHHHHHcCCCcee
Confidence 99999 9999999 9999999999 9999999 889 88888988888776666666666666778
Q ss_pred eEEEECCCccccc-cHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHH
Q psy7952 166 KLLYVTPERAVTE-SFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQ 244 (444)
Q Consensus 166 ~Iiv~Tpe~l~~~-~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~ 244 (444)
.+++.|||++... .|-..+........+.+|-+||+|+.+.||++|++.|..+.-+.+.|+. ++++++|||..+.+.+
T Consensus 188 kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~-~~iigltatatn~vl~ 266 (695)
T KOG0353|consen 188 KLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKG-APIIGLTATATNHVLD 266 (695)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCC-Cceeeeehhhhcchhh
Confidence 9999999998642 2444445555667889999999999999999999999999888888887 9999999999999999
Q ss_pred HHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-
Q psy7952 245 DIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK- 323 (444)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~- 323 (444)
+....+++... ..++.+..||++.|.+...+...+. ..+.+.+++.... .+...||||-|.++|++++..|...
T Consensus 267 d~k~il~ie~~-~tf~a~fnr~nl~yev~qkp~n~dd---~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~g 341 (695)
T KOG0353|consen 267 DAKDILCIEAA-FTFRAGFNRPNLKYEVRQKPGNEDD---CIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHG 341 (695)
T ss_pred HHHHHHhHHhh-heeecccCCCCceeEeeeCCCChHH---HHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcC
Confidence 99999887666 4566788999999999988764332 2233333332222 5778999999999999999999887
Q ss_pred ---------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHH------------------
Q psy7952 324 ---------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQ------------------ 376 (444)
Q Consensus 324 ---------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q------------------ 376 (444)
+.+++|..+-+.|..|++.|+|||-.++.|||-|++++|||..+|+|+++|.|
T Consensus 342 i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdt 421 (695)
T KOG0353|consen 342 IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDT 421 (695)
T ss_pred ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccC
Confidence 88999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------HhccCCCCCCceeEEEEecccchhhHHHHHhhccchhHHHHHHHHhhHHHHHHHh
Q psy7952 377 -------------------------ESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYC 431 (444)
Q Consensus 377 -------------------------r~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (444)
-.||+||++.+..|++++.-.+.-.+..+.. .-...+.++.+|++||
T Consensus 422 ggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~--------~e~~g~q~ly~mv~y~ 493 (695)
T KOG0353|consen 422 GGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQ--------MENTGIQKLYEMVRYA 493 (695)
T ss_pred CCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHH--------HHhhhHHHHHHHHHHH
Confidence 6799999999999999999888777776654 2233577788888887
Q ss_pred h
Q psy7952 432 E 432 (444)
Q Consensus 432 ~ 432 (444)
.
T Consensus 494 ~ 494 (695)
T KOG0353|consen 494 A 494 (695)
T ss_pred h
Confidence 6
No 29
>KOG0345|consensus
Probab=100.00 E-value=1.4e-44 Score=331.66 Aligned_cols=336 Identities=18% Similarity=0.273 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC-cc----ce
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN-VR----SR 107 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~-~~----~~ 107 (444)
..++.+++.. +||.. .||.|..+++.++.+ +|+.+.+|||||||++ |++|. ++.+.++. .. --
T Consensus 14 ~~~l~~~l~~-~GF~~-mTpVQa~tIPlll~~-KDVvveavTGSGKTlA--------FllP~-le~i~rr~~~~~~~~vg 81 (567)
T KOG0345|consen 14 SPWLLEALDE-SGFEK-MTPVQAATIPLLLKN-KDVVVEAVTGSGKTLA--------FLLPM-LEIIYRREAKTPPGQVG 81 (567)
T ss_pred cHHHHHHHHh-cCCcc-cCHHHHhhhHHHhcC-CceEEEcCCCCCchhh--------HHHHH-HHHHHhhccCCCcccee
Confidence 4678888988 59997 789999999999999 9999999999999999 99998 66664432 11 14
Q ss_pred eEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL 187 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~ 187 (444)
+||++|||+|+ .|+.+.+..+......+++..+.|+.+..+....+.+ .++.|+||||++|. +.+....
T Consensus 82 alIIsPTRELa--~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fke-----e~~nIlVgTPGRL~----di~~~~~ 150 (567)
T KOG0345|consen 82 ALIISPTRELA--RQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKE-----EGPNILVGTPGRLL----DILQREA 150 (567)
T ss_pred EEEecCcHHHH--HHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHH-----hCCcEEEeCchhHH----HHHhchh
Confidence 69999999999 5568888777222344999999999888776666643 57889999999984 3333323
Q ss_pred Hh--hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCC
Q psy7952 188 VR--YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFR 265 (444)
Q Consensus 188 ~~--~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (444)
.. +.++.++|+||||++++.| |...+ ..++..+|+..+.=++|||......+... .|+.+++.+.......
T Consensus 151 ~~l~~rsLe~LVLDEADrLldmg--Fe~~~---n~ILs~LPKQRRTGLFSATq~~~v~dL~r--aGLRNpv~V~V~~k~~ 223 (567)
T KOG0345|consen 151 EKLSFRSLEILVLDEADRLLDMG--FEASV---NTILSFLPKQRRTGLFSATQTQEVEDLAR--AGLRNPVRVSVKEKSK 223 (567)
T ss_pred hhccccccceEEecchHhHhccc--HHHHH---HHHHHhcccccccccccchhhHHHHHHHH--hhccCceeeeeccccc
Confidence 33 4489999999999999999 66444 45566788878899999999988877444 4566777666554332
Q ss_pred ---C-CceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------------cCHHHH
Q psy7952 266 ---S-NLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------------VNKHER 329 (444)
Q Consensus 266 ---~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------------~~~~~r 329 (444)
| .....+...+ ...+...+.+++.. . ..+++|||++|...++..+..+... +....|
T Consensus 224 ~~tPS~L~~~Y~v~~-a~eK~~~lv~~L~~----~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R 296 (567)
T KOG0345|consen 224 SATPSSLALEYLVCE-ADEKLSQLVHLLNN----N--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKAR 296 (567)
T ss_pred ccCchhhcceeeEec-HHHHHHHHHHHHhc----c--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhH
Confidence 2 1222222222 23333344444433 2 5789999999999999888877665 888899
Q ss_pred HHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHH
Q psy7952 330 SRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405 (444)
Q Consensus 330 ~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 405 (444)
..+++.|+...-.+|+|||++++|+|||++++||++|+|.+...|+||+||++|.|+.|.+++|+.+.+......+
T Consensus 297 ~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 297 AKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred HHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 9999999998889999999999999999999999999999999999999999999999999999998665554444
No 30
>KOG0335|consensus
Probab=100.00 E-value=8.1e-45 Score=340.88 Aligned_cols=345 Identities=19% Similarity=0.292 Sum_probs=266.9
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC---------
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN--------- 103 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~--------- 103 (444)
.+.+...++. .|++. ||++|+.+++.+..| ++.+++|+||+|||.+ |++|+ +.++...+
T Consensus 82 ~~~l~~ni~~-~~~~~-ptpvQk~sip~i~~G-rdl~acAqTGsGKT~a--------FLiPi-i~~~~~~~~~~~~~~~~ 149 (482)
T KOG0335|consen 82 GEALAGNIKR-SGYTK-PTPVQKYSIPIISGG-RDLMACAQTGSGKTAA--------FLIPI-ISYLLDEGPEDRGESGG 149 (482)
T ss_pred hHHHhhcccc-ccccC-CCcceeeccceeecC-CceEEEccCCCcchHH--------HHHHH-HHHHHhcCcccCcccCC
Confidence 4445555555 38887 899999999999999 9999999999999999 99998 55555443
Q ss_pred -ccceeEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccH
Q psy7952 104 -VRSRNGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESF 180 (444)
Q Consensus 104 -~~~~vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~ 180 (444)
..|+++|++||++|+ .|+.+..+.+ ... ++...++|+....... +....+++|+|+||++|.
T Consensus 150 ~~~P~~lIlapTReL~--~Qi~nea~k~~~~s~---~~~~~~ygg~~~~~q~------~~~~~gcdIlvaTpGrL~---- 214 (482)
T KOG0335|consen 150 GVYPRALILAPTRELV--DQIYNEARKFSYLSG---MKSVVVYGGTDLGAQL------RFIKRGCDILVATPGRLK---- 214 (482)
T ss_pred CCCCceEEEeCcHHHh--hHHHHHHHhhccccc---ceeeeeeCCcchhhhh------hhhccCccEEEecCchhh----
Confidence 248999999999999 5556666666 334 7888888886655433 333679999999999986
Q ss_pred HHHHHHHHhhCCccEEEEeccccccc-cCCCcHHHHHHHHHHHHhhC-CCCcEEEEeccCCcchHHHHHHHhcC-CCCeE
Q psy7952 181 HYLLQHLVRYNKLAYIVVDEAHCVSE-WGHDFRPTYRRLGELRQFTG-NSIPIIALTATAEPSVKQDIISVLKF-NKPYK 257 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~iViDE~H~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~l~~-~~~~~ 257 (444)
+.+-.....+.+++++|+||+++|++ .+ |.+.+..|.......+ .+.|.+++|||.+.........++.- ...+.
T Consensus 215 d~~e~g~i~l~~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~la 292 (482)
T KOG0335|consen 215 DLIERGKISLDNCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLA 292 (482)
T ss_pred hhhhcceeehhhCcEEEecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEE
Confidence 55566667788899999999999998 77 7777777765443332 34789999999999877755555432 22344
Q ss_pred EEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHh---ccCCCCCceEEEEecccchHHHHHHHHHhh----------c
Q psy7952 258 VFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCL---GKDNKANNCGIIYCRTREHTTDLADALRRK----------V 324 (444)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~ 324 (444)
+.+-.....++...+.+... ..+...+.+++.... .......++++|||.+++.|..++..|... .
T Consensus 293 V~rvg~~~~ni~q~i~~V~~-~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~ 371 (482)
T KOG0335|consen 293 VGRVGSTSENITQKILFVNE-MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDR 371 (482)
T ss_pred EeeeccccccceeEeeeecc-hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchh
Confidence 44556667777777766553 233334444444332 111123348999999999999999999888 6
Q ss_pred CHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHH
Q psy7952 325 NKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEY 404 (444)
Q Consensus 325 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 404 (444)
.+.+|...++.|++|...+||||+++++|+|+|+|+|||+||+|.+..+|+||+||+||.|+.|.++.|++..+....+.
T Consensus 372 tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~ 451 (482)
T KOG0335|consen 372 TQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKA 451 (482)
T ss_pred hhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999666655555
Q ss_pred HHh
Q psy7952 405 VIK 407 (444)
Q Consensus 405 ~~~ 407 (444)
|.+
T Consensus 452 L~~ 454 (482)
T KOG0335|consen 452 LVE 454 (482)
T ss_pred HHH
Confidence 543
No 31
>KOG0326|consensus
Probab=100.00 E-value=8.3e-45 Score=317.69 Aligned_cols=331 Identities=19% Similarity=0.276 Sum_probs=260.9
Q ss_pred CCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCcc
Q psy7952 45 GFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRD 124 (444)
Q Consensus 45 g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~ 124 (444)
||+. |+|+|.++++.++.| +|++..|..|+|||.+ |.+|. ++.+-.....=..++++||++|+||. .
T Consensus 104 G~ek-PSPiQeesIPiaLtG-rdiLaRaKNGTGKT~a--------~~IP~-Lekid~~~~~IQ~~ilVPtrelALQt--S 170 (459)
T KOG0326|consen 104 GFEK-PSPIQEESIPIALTG-RDILARAKNGTGKTAA--------YCIPV-LEKIDPKKNVIQAIILVPTRELALQT--S 170 (459)
T ss_pred ccCC-CCCccccccceeecc-hhhhhhccCCCCCccc--------eechh-hhhcCccccceeEEEEeecchhhHHH--H
Confidence 9997 899999999999999 9999999999999999 99999 55555555445779999999999665 8
Q ss_pred chHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccc
Q psy7952 125 DKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAH 202 (444)
Q Consensus 125 ~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H 202 (444)
+.+.++ ..+ +++...+|+++..+ ++-++.+..+++|+||+++. +.....-..+++..++|+|||+
T Consensus 171 qvc~~lskh~~---i~vmvttGGT~lrD------DI~Rl~~~VH~~vgTPGRIl----DL~~KgVa~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 171 QVCKELSKHLG---IKVMVTTGGTSLRD------DIMRLNQTVHLVVGTPGRIL----DLAKKGVADLSDCVILVMDEAD 237 (459)
T ss_pred HHHHHHhcccC---eEEEEecCCccccc------ceeeecCceEEEEcCChhHH----HHHhcccccchhceEEEechhh
Confidence 888888 556 99999999988653 34445788999999999985 4444555567888999999999
Q ss_pred cccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCC-CCCc--eEEEEEcccch
Q psy7952 203 CVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF-RSNL--FYDVIFDDLLK 279 (444)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~ 279 (444)
.+++.. |.+.+ .+++..+|++.|+++.|||.+-.+...+.+.+ .+|+.+..-... ...+ +|.+... .
T Consensus 238 KlLs~~--F~~~~---e~li~~lP~~rQillySATFP~tVk~Fm~~~l--~kPy~INLM~eLtl~GvtQyYafV~e---~ 307 (459)
T KOG0326|consen 238 KLLSVD--FQPIV---EKLISFLPKERQILLYSATFPLTVKGFMDRHL--KKPYEINLMEELTLKGVTQYYAFVEE---R 307 (459)
T ss_pred hhhchh--hhhHH---HHHHHhCCccceeeEEecccchhHHHHHHHhc--cCcceeehhhhhhhcchhhheeeech---h
Confidence 998755 66544 45666789999999999999998888777765 566665543322 1222 2222221 1
Q ss_pred hhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCc
Q psy7952 280 DSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATIS 349 (444)
Q Consensus 280 ~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~ 349 (444)
.+ ..-+..++.+- .-.+.||||||.+.++-+|..+.+. |.++.|..++..|++|.++.|||||.
T Consensus 308 qK----vhCLntLfskL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 308 QK----VHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred hh----hhhHHHHHHHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhh
Confidence 22 22233333322 4567899999999999999987666 89999999999999999999999999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhccchhHHHHH
Q psy7952 350 FGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLE 418 (444)
Q Consensus 350 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (444)
+.+|||++.+++||+||+|++.++|+||+||.||.|..|.++.++.-+|...+..+.. .+..+..+++
T Consensus 382 ~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~-eLGtEI~pip 449 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ-ELGTEIKPIP 449 (459)
T ss_pred hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH-HhccccccCC
Confidence 9999999999999999999999999999999999999999999999888777666643 3344443443
No 32
>KOG0348|consensus
Probab=100.00 E-value=2.4e-43 Score=327.81 Aligned_cols=345 Identities=19% Similarity=0.241 Sum_probs=262.6
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC------Cccc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG------NVRS 106 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~------~~~~ 106 (444)
...+...++..+++.. ||.+|.++++.++.| +|++|.++||+|||++ |++|. .+.+... ...+
T Consensus 144 ~~~lv~~L~~~m~i~~-pTsVQkq~IP~lL~g-rD~lV~aQTGSGKTLA--------YllPi-Vq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 144 HPHLVSHLNTKMKISA-PTSVQKQAIPVLLEG-RDALVRAQTGSGKTLA--------YLLPI-VQSLQAMEPKIQRSDGP 212 (708)
T ss_pred CHHHHHHHHHHhccCc-cchHhhcchhhhhcC-cceEEEcCCCCcccHH--------HHHHH-HHHHHhcCccccccCCc
Confidence 5667888999999998 999999999999999 9999999999999999 99998 4444432 2335
Q ss_pred eeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH-
Q psy7952 107 RNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ- 185 (444)
Q Consensus 107 ~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~- 185 (444)
-+||++|||+|+ .|+.+.++.+-..+-+|-...+.|+......+..+ ..++.|+|+||++|. +.+.+
T Consensus 213 ~ALVivPTREL~--~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARL------RKGiNILIgTPGRLv----DHLknT 280 (708)
T KOG0348|consen 213 YALVIVPTRELA--LQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARL------RKGINILIGTPGRLV----DHLKNT 280 (708)
T ss_pred eEEEEechHHHH--HHHHHHHHHHhcCceEEeeceeecccccccHHHHH------hcCceEEEcCchHHH----HHHhcc
Confidence 789999999999 44588888885555567677777776554333333 478999999999985 22222
Q ss_pred HHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhh----------CCCCcEEEEeccCCcchHHHHHHHhcCCCC
Q psy7952 186 HLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFT----------GNSIPIIALTATAEPSVKQDIISVLKFNKP 255 (444)
Q Consensus 186 ~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~ 255 (444)
....+.+++++|+||+|++.+.| |...+..|....... +...+-+++|||+...+.+ ...+.+.++
T Consensus 281 ~~i~~s~LRwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDp 356 (708)
T KOG0348|consen 281 KSIKFSRLRWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLKDP 356 (708)
T ss_pred chheeeeeeEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH--HhhccccCc
Confidence 23346789999999999999988 666666666555221 1124678999999987766 344556777
Q ss_pred eEEEecC---CCCCC--------------------------ceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEE
Q psy7952 256 YKVFKTS---TFRSN--------------------------LFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIY 306 (444)
Q Consensus 256 ~~~~~~~---~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf 306 (444)
+.+.... ...|. ..|.+.. .......+..++....... ...++|||
T Consensus 357 v~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVP---pKLRLV~Laa~L~~~~k~~--~~qk~iVF 431 (708)
T KOG0348|consen 357 VYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVP---PKLRLVALAALLLNKVKFE--EKQKMIVF 431 (708)
T ss_pred eeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecC---CchhHHHHHHHHHHHhhhh--hhceeEEE
Confidence 6665111 00100 0011111 1223344455555555544 45599999
Q ss_pred ecccchHHHHHHHHHhh--------------------------------cCHHHHHHHHHHHhcCCccEEEEcCcccccc
Q psy7952 307 CRTREHTTDLADALRRK--------------------------------VNKHERSRVQESFMRGEINVITATISFGMGI 354 (444)
Q Consensus 307 ~~s~~~~~~l~~~L~~~--------------------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 354 (444)
+++.+.++.-++.|... |.+++|..+++.|....-.||+|||++++|+
T Consensus 432 ~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGL 511 (708)
T KOG0348|consen 432 FSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGL 511 (708)
T ss_pred EechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccC
Confidence 99999999999988766 8999999999999998888999999999999
Q ss_pred ccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhc
Q psy7952 355 DRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTD 409 (444)
Q Consensus 355 di~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 409 (444)
|+|+|++||.||+|.+..+|+||+||+.|.|..|.+++|+.+.+.+.++.+....
T Consensus 512 DlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 512 DLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred CCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999988776665533
No 33
>KOG0347|consensus
Probab=100.00 E-value=7e-43 Score=325.72 Aligned_cols=348 Identities=20% Similarity=0.275 Sum_probs=255.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC
Q psy7952 23 QQDRKGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG 102 (444)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~ 102 (444)
...|..- +.+..+.++|.. .||.. ||++|..+++.+..|..|++-.|.||||||++ |.+|++...+..+
T Consensus 180 vsAW~~l-~lp~~iL~aL~~-~gFs~-Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLA--------FGIPiv~~l~~~s 248 (731)
T KOG0347|consen 180 VSAWKNL-FLPMEILRALSN-LGFSR-PTEIQSLVLPAAIRGKVDILGAAETGSGKTLA--------FGIPIVERLLESS 248 (731)
T ss_pred hHHHhcC-CCCHHHHHHHHh-cCCCC-CccchhhcccHhhccchhcccccccCCCceee--------ecchhhhhhhhcc
Confidence 3445555 346678888888 49998 99999999999999988999999999999999 9999944222222
Q ss_pred C------------ccceeEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEE
Q psy7952 103 N------------VRSRNGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLL 168 (444)
Q Consensus 103 ~------------~~~~vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 168 (444)
+ ..+-.||++|||+|+ .||.+++..+ ..+ +.+..++|+.....+..++. ..++|+
T Consensus 249 ~~s~e~~~~~~k~~k~~~LV~tPTRELa--~QV~~Hl~ai~~~t~---i~v~si~GGLavqKQqRlL~------~~p~IV 317 (731)
T KOG0347|consen 249 DDSQELSNTSAKYVKPIALVVTPTRELA--HQVKQHLKAIAEKTQ---IRVASITGGLAVQKQQRLLN------QRPDIV 317 (731)
T ss_pred chHhhhhhHHhccCcceeEEecChHHHH--HHHHHHHHHhccccC---eEEEEeechhHHHHHHHHHh------cCCCEE
Confidence 2 112389999999999 7777777777 445 99999999999887777664 478999
Q ss_pred EECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHH-hhCCCCcEEEEeccCCcchHH---
Q psy7952 169 YVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQ-FTGNSIPIIALTATAEPSVKQ--- 244 (444)
Q Consensus 169 v~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~v~lSAT~~~~~~~--- 244 (444)
|+||++|-. .+..-..+..++.++.++|+||+|+|.+.|+ |...-..|..+.. ......|.+.+|||+.-...+
T Consensus 318 VATPGRlwe-li~e~n~~l~~~k~vkcLVlDEaDRmvekgh-F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~ 395 (731)
T KOG0347|consen 318 VATPGRLWE-LIEEDNTHLGNFKKVKCLVLDEADRMVEKGH-FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLS 395 (731)
T ss_pred EecchHHHH-HHHhhhhhhhhhhhceEEEEccHHHHhhhcc-HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhH
Confidence 999999821 1111112345678899999999999999886 6554444444331 122236899999997532221
Q ss_pred -----------------HHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHH--hccCC-------C
Q psy7952 245 -----------------DIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKC--LGKDN-------K 298 (444)
Q Consensus 245 -----------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~-------~ 298 (444)
.+...+++...-.+.. ..........+.+-...+ +++.. .
T Consensus 396 ~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD--------------~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~r 461 (731)
T KOG0347|consen 396 SSRKKKDKEDELNAKIQHLMKKIGFRGKPKIID--------------LTPQSATASTLTESLIECPPLEKDLYLYYFLTR 461 (731)
T ss_pred HhhhccchhhhhhHHHHHHHHHhCccCCCeeEe--------------cCcchhHHHHHHHHhhcCCccccceeEEEEEee
Confidence 1222222221111110 000111111111111111 00000 0
Q ss_pred CCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCC
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMP 368 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p 368 (444)
-.+++|||||+.+.+.+++-.|... |.+..|...+++|++....||||||++++|+|||+|.|||||..|
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVP 541 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVP 541 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecC
Confidence 3789999999999999999999877 889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhh
Q psy7952 369 SSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT 408 (444)
Q Consensus 369 ~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 408 (444)
.+.+.|+||.||+.|.+..|..+.++.+.+...+.++.+.
T Consensus 542 rtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~kt 581 (731)
T KOG0347|consen 542 RTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKT 581 (731)
T ss_pred CccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHH
Confidence 9999999999999999999999999999999998888764
No 34
>KOG0343|consensus
Probab=100.00 E-value=1.2e-42 Score=324.20 Aligned_cols=340 Identities=20% Similarity=0.225 Sum_probs=259.2
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC----cccee
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN----VRSRN 108 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~----~~~~v 108 (444)
.....++|++. +|.. +|++|+.+++..+.| +|++-.|.||||||++ |++|. ++.+++.+ ..-=+
T Consensus 77 s~~t~kgLke~-~fv~-~teiQ~~~Ip~aL~G-~DvlGAAkTGSGKTLA--------FlvPv-lE~L~r~kWs~~DGlGa 144 (758)
T KOG0343|consen 77 SQKTLKGLKEA-KFVK-MTEIQRDTIPMALQG-HDVLGAAKTGSGKTLA--------FLVPV-LEALYRLKWSPTDGLGA 144 (758)
T ss_pred chHHHHhHhhc-CCcc-HHHHHHhhcchhccC-cccccccccCCCceee--------ehHHH-HHHHHHcCCCCCCCcee
Confidence 34455677765 7776 789999999999999 9999999999999999 99999 66666543 22347
Q ss_pred EEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 109 GWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 109 lil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
||++|||+|++|. .+.+... ... +.+..+.|+.......... +...|+||||++|.. |.--.-
T Consensus 145 lIISPTRELA~Qt--FevL~kvgk~h~---fSaGLiiGG~~~k~E~eRi-------~~mNILVCTPGRLLQ---Hmde~~ 209 (758)
T KOG0343|consen 145 LIISPTRELALQT--FEVLNKVGKHHD---FSAGLIIGGKDVKFELERI-------SQMNILVCTPGRLLQ---HMDENP 209 (758)
T ss_pred EEecchHHHHHHH--HHHHHHHhhccc---cccceeecCchhHHHHHhh-------hcCCeEEechHHHHH---HhhhcC
Confidence 9999999999322 4444444 334 7889999998765444333 477899999999852 111111
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCC---
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST--- 263 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~--- 263 (444)
.....++.++|+|||+++++.| |...+..|. ..+|...|.+++|||....+.+..+ +.+.+|..+.....
T Consensus 210 ~f~t~~lQmLvLDEADR~LDMG--Fk~tL~~Ii---~~lP~~RQTLLFSATqt~svkdLaR--LsL~dP~~vsvhe~a~~ 282 (758)
T KOG0343|consen 210 NFSTSNLQMLVLDEADRMLDMG--FKKTLNAII---ENLPKKRQTLLFSATQTKSVKDLAR--LSLKDPVYVSVHENAVA 282 (758)
T ss_pred CCCCCcceEEEeccHHHHHHHh--HHHHHHHHH---HhCChhheeeeeecccchhHHHHHH--hhcCCCcEEEEeccccc
Confidence 2234578999999999999999 886666654 4788889999999999988766333 44667765554421
Q ss_pred -CCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------------cCHHHHH
Q psy7952 264 -FRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------------VNKHERS 330 (444)
Q Consensus 264 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------------~~~~~r~ 330 (444)
...++...+...+ . +..++++..++..+ ...+.|||++|.+++..++..+++. |++..|.
T Consensus 283 atP~~L~Q~y~~v~-l----~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 283 ATPSNLQQSYVIVP-L----EDKIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred cChhhhhheEEEEe-h----hhHHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 1122222222221 1 23345555555544 4778999999999999999999888 8999999
Q ss_pred HHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccc-hhhHHHHHhhc
Q psy7952 331 RVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS-KKSLEYVIKTD 409 (444)
Q Consensus 331 ~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~ 409 (444)
.+.++|.....-||+||+++++|+|+|.|++||.+|-|.++.+|+||+||+.|.+..|.+.+++.+.+ ...+..+.+..
T Consensus 356 ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 356 EVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK 435 (758)
T ss_pred HHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999998887 56667776665
Q ss_pred cchh
Q psy7952 410 TSTK 413 (444)
Q Consensus 410 ~~~~ 413 (444)
++.+
T Consensus 436 I~i~ 439 (758)
T KOG0343|consen 436 IPIK 439 (758)
T ss_pred CCHH
Confidence 6654
No 35
>KOG0346|consensus
Probab=100.00 E-value=1.2e-41 Score=309.68 Aligned_cols=339 Identities=19% Similarity=0.233 Sum_probs=261.3
Q ss_pred CCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC------c
Q psy7952 31 VSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN------V 104 (444)
Q Consensus 31 ~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~------~ 104 (444)
-.++++.+++.+. ||+. ||-+|..+++-+++| +|++..|.||||||.+ |++|. ++.+.... .
T Consensus 25 gLD~RllkAi~~l-G~ek-pTlIQs~aIplaLEg-KDvvarArTGSGKT~A--------YliPl-lqkll~~k~t~~~e~ 92 (569)
T KOG0346|consen 25 GLDSRLLKAITKL-GWEK-PTLIQSSAIPLALEG-KDVVARARTGSGKTAA--------YLIPL-LQKLLAEKKTNDGEQ 92 (569)
T ss_pred CCCHHHHHHHHHh-CcCC-cchhhhcccchhhcC-cceeeeeccCCCchHH--------HHHHH-HHHHHHhhhcccccc
Confidence 3478899999985 9998 999999999999999 8999999999999999 99999 65555432 3
Q ss_pred cceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHH
Q psy7952 105 RSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYL 183 (444)
Q Consensus 105 ~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~ 183 (444)
.+.++|++||++|+ +|+...++.+ ..-...+++.-+.++.+.......+ .+.++|+|+||.++. ..+
T Consensus 93 ~~sa~iLvPTkEL~--qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L------~d~pdIvV~TP~~ll----~~~ 160 (569)
T KOG0346|consen 93 GPSAVILVPTKELA--QQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVAL------MDLPDIVVATPAKLL----RHL 160 (569)
T ss_pred cceeEEEechHHHH--HHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHH------ccCCCeEEeChHHHH----HHH
Confidence 36889999999999 7777777777 2222226666666666655544444 468999999999985 333
Q ss_pred HHHH-HhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecC
Q psy7952 184 LQHL-VRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTS 262 (444)
Q Consensus 184 ~~~~-~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (444)
.... .....+.++|+||||.++.+| |... +.++...+|...|-++||||+...+.. ...+.+.+|+.+...+
T Consensus 161 ~~~~~~~~~~l~~LVvDEADLllsfG--Yeed---lk~l~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviLkl~e 233 (569)
T KOG0346|consen 161 AAGVLEYLDSLSFLVVDEADLLLSFG--YEED---LKKLRSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVILKLTE 233 (569)
T ss_pred hhccchhhhheeeEEechhhhhhhcc--cHHH---HHHHHHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEEEecc
Confidence 3333 446678999999999999988 6644 455556778888999999999887654 3445578887776655
Q ss_pred CCCCC---ceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHH
Q psy7952 263 TFRSN---LFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHER 329 (444)
Q Consensus 263 ~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r 329 (444)
...++ ......... ..++.-.+..+++--+ ..++.|||+|+.+.|.++.-.|... ++...|
T Consensus 234 ~el~~~dqL~Qy~v~cs-e~DKflllyallKL~L-----I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR 307 (569)
T KOG0346|consen 234 GELPNPDQLTQYQVKCS-EEDKFLLLYALLKLRL-----IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSR 307 (569)
T ss_pred ccCCCcccceEEEEEec-cchhHHHHHHHHHHHH-----hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccch
Confidence 44442 222222222 4455444444444322 4788999999999999997777665 888999
Q ss_pred HHHHHHHhcCCccEEEEcC-----------------------------------ccccccccCCccEEEEeCCCCCHHHH
Q psy7952 330 SRVQESFMRGEINVITATI-----------------------------------SFGMGIDRQNVRFVVHWGMPSSIPAY 374 (444)
Q Consensus 330 ~~~~~~f~~g~~~vLvaT~-----------------------------------~~~~Gidi~~~~~Vi~~~~p~s~~~~ 374 (444)
-.+++.|..|-.+++|||| -.++|||+.+|..|++||+|.++..|
T Consensus 308 ~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sY 387 (569)
T KOG0346|consen 308 CHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSY 387 (569)
T ss_pred hhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHH
Confidence 9999999999999999999 24689999999999999999999999
Q ss_pred HHHhccCCCCCCceeEEEEecccchh---hHHHHH
Q psy7952 375 YQESGRAGRDGLQSYCRIYHSEHSKK---SLEYVI 406 (444)
Q Consensus 375 ~Qr~GR~~R~g~~g~~~~~~~~~~~~---~~~~~~ 406 (444)
+||+||++|.+++|.++.|+.+.+.. .+..+.
T Consensus 388 IHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~ 422 (569)
T KOG0346|consen 388 IHRVGRTARGNNKGTALSFVSPKEEFGKESLESIL 422 (569)
T ss_pred HHhccccccCCCCCceEEEecchHHhhhhHHHHHH
Confidence 99999999999999999999988766 444443
No 36
>KOG4284|consensus
Probab=100.00 E-value=1.8e-41 Score=321.41 Aligned_cols=334 Identities=15% Similarity=0.176 Sum_probs=266.9
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
-..+..+|++. +|.. ||++|..|++.++.+ -|.||.+..|+|||++ |.+.+ ++.+........++|++
T Consensus 33 ~r~vl~glrrn-~f~~-ptkiQaaAIP~~~~k-mDliVQaKSGTGKTlV--------fsv~a-v~sl~~~~~~~q~~Iv~ 100 (980)
T KOG4284|consen 33 WREVLLGLRRN-AFAL-PTKIQAAAIPAIFSK-MDLIVQAKSGTGKTLV--------FSVLA-VESLDSRSSHIQKVIVT 100 (980)
T ss_pred HHHHHHHHHhh-cccC-CCchhhhhhhhhhcc-cceEEEecCCCCceEE--------EEeee-ehhcCcccCcceeEEEe
Confidence 34555677764 8886 999999999999999 9999999999999999 88777 66666677777889999
Q ss_pred chhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCC
Q psy7952 113 PILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNK 192 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~ 192 (444)
|||+++ +||.+.+..++..+.+.++..+.|+.........+ +.++|+||||+++. +.+-....+.+.
T Consensus 101 PTREia--VQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-------k~~rIvIGtPGRi~----qL~el~~~n~s~ 167 (980)
T KOG4284|consen 101 PTREIA--VQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-------KQTRIVIGTPGRIA----QLVELGAMNMSH 167 (980)
T ss_pred cchhhh--hHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-------hhceEEecCchHHH----HHHHhcCCCccc
Confidence 999999 88899999885555559999999998765443333 46789999999986 556667778889
Q ss_pred ccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCC--CCceE
Q psy7952 193 LAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFR--SNLFY 270 (444)
Q Consensus 193 ~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~ 270 (444)
++++|+||||.+.+.+. |. ..|..+...+|...|++++|||.+....+.+..++ .+|..+....... -.+..
T Consensus 168 vrlfVLDEADkL~~t~s-fq---~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~m--rdp~lVr~n~~d~~L~GikQ 241 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTES-FQ---DDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFM--RDPALVRFNADDVQLFGIKQ 241 (980)
T ss_pred eeEEEeccHHhhhchhh-HH---HHHHHHHHhcchhheeeEEeccCchhHHHHHHHHh--cccceeecccCCceeechhh
Confidence 99999999999987443 55 44555666888889999999999999999888875 4665554433222 12222
Q ss_pred EEEEcccchhhHHH---HHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHh
Q psy7952 271 DVIFDDLLKDSYAH---VKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFM 337 (444)
Q Consensus 271 ~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~ 337 (444)
.+..........+. ....+.+++... +..+.||||+....|+.++..|... |++.+|..+++.++
T Consensus 242 yv~~~~s~nnsveemrlklq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr 319 (980)
T KOG4284|consen 242 YVVAKCSPNNSVEEMRLKLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLR 319 (980)
T ss_pred eeeeccCCcchHHHHHHHHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhh
Confidence 22222222222222 233333443333 6789999999999999999999888 99999999999999
Q ss_pred cCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 338 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 338 ~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
.-..+|||+||..++|||-|+++.||+.|.|.+..+|.||+|||||+|..|.+++|+..+..
T Consensus 320 ~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 320 AFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999999999999976543
No 37
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.3e-40 Score=343.51 Aligned_cols=351 Identities=21% Similarity=0.222 Sum_probs=252.2
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHcc-----CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccce
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLR-----THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSR 107 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~-----~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~ 107 (444)
+..+.+.+.+.|||+ ||+.|.++++.++++ .+++++++|||+|||.+ ++.++ +..+..+ .+
T Consensus 437 ~~~~~~~~~~~~~f~--~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~v--------al~a~-l~al~~g---~q 502 (926)
T TIGR00580 437 DLEWQQEFEDSFPFE--ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEV--------AMRAA-FKAVLDG---KQ 502 (926)
T ss_pred CHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHH--------HHHHH-HHHHHhC---Ce
Confidence 455677788889997 589999999999974 26899999999999999 44444 2223333 46
Q ss_pred eEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 185 (444)
++|++||++|+ .|+.+.+ .+...++++..+++.....+.......+. .+.++|+|+||.. +.
T Consensus 503 vlvLvPT~~LA-----~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~--~g~~dIVIGTp~l---------l~ 566 (926)
T TIGR00580 503 VAVLVPTTLLA-----QQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELA--SGKIDILIGTHKL---------LQ 566 (926)
T ss_pred EEEEeCcHHHH-----HHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHH--cCCceEEEchHHH---------hh
Confidence 79999999999 5555554 12222388889998888777777666654 3578999999843 33
Q ss_pred HHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCC
Q psy7952 186 HLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFR 265 (444)
Q Consensus 186 ~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (444)
....+.+++++||||+|++ |...+ ..++..+.++++++|||||.+..... ...+..+...+......+
T Consensus 567 ~~v~f~~L~llVIDEahrf---gv~~~-------~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s~I~~~p~~R 634 (926)
T TIGR00580 567 KDVKFKDLGLLIIDEEQRF---GVKQK-------EKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLSIIATPPEDR 634 (926)
T ss_pred CCCCcccCCEEEeeccccc---chhHH-------HHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcEEEecCCCCc
Confidence 4456788999999999994 31111 12233455689999999998765543 233444544444333334
Q ss_pred CCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------------cCHHHHHHHH
Q psy7952 266 SNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------------VNKHERSRVQ 333 (444)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------------~~~~~r~~~~ 333 (444)
.++...+.... ...+...+...+. .+++++|||+++++++.+++.|.+. |++.+|..++
T Consensus 635 ~~V~t~v~~~~-----~~~i~~~i~~el~----~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im 705 (926)
T TIGR00580 635 LPVRTFVMEYD-----PELVREAIRRELL----RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVM 705 (926)
T ss_pred cceEEEEEecC-----HHHHHHHHHHHHH----cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Confidence 44433322211 1122222222222 4689999999999999999999873 8999999999
Q ss_pred HHHhcCCccEEEEcCccccccccCCccEEEEeCCCC-CHHHHHHHhccCCCCCCceeEEEEecc------cchhhHHHHH
Q psy7952 334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGLQSYCRIYHSE------HSKKSLEYVI 406 (444)
Q Consensus 334 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~------~~~~~~~~~~ 406 (444)
++|++|+.+|||||+++++|+|+|++++||+++.|. +..+|+||+||+||.|+.|+|++++++ ...++++.+.
T Consensus 706 ~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~ 785 (926)
T TIGR00580 706 LEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQ 785 (926)
T ss_pred HHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999998864 688999999999999999999999864 3445666666
Q ss_pred hhcc---chhHHHHHHHHhhHHHHHHHhhhc
Q psy7952 407 KTDT---STKREQLELKFKNYLSMLEYCEQG 434 (444)
Q Consensus 407 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 434 (444)
+... ..+....+.++++..++.-..++|
T Consensus 786 ~~~~~g~gf~ia~~Dl~~Rg~G~~lG~~QsG 816 (926)
T TIGR00580 786 EFSELGAGFKIALHDLEIRGAGNLLGEEQSG 816 (926)
T ss_pred HhhcchhhHHHHHHHHHhcCCcCCCCCcccC
Confidence 5544 556667777777766666544444
No 38
>KOG0332|consensus
Probab=100.00 E-value=4.8e-41 Score=299.98 Aligned_cols=346 Identities=15% Similarity=0.188 Sum_probs=263.1
Q ss_pred CCCCCCcCCCCCCCCCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccC-CcEEEEccCCCcccccccccccceEEeCCC
Q psy7952 17 SSLTGNQQDRKGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRT-HDIFVSMPTGAVSLVGSVVSARSRVRIPPG 95 (444)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~-~~~ii~apTGsGKT~~a~~~~~~~~~~~~~ 95 (444)
+.++........+--...++.+++-. ++|.. |+.+|..+++-++... ++.|..+..|+|||.+ |.+..
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~-M~F~k-PskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaa--------FvL~M- 150 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYA-MKFQK-PSKIQETALPLLLAEPPQNLIAQSQSGTGKTAA--------FVLTM- 150 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHH-hccCC-cchHHHhhcchhhcCCchhhhhhhcCCCchhHH--------HHHHH-
Confidence 33333333333333335567777776 69997 9999999999999875 7899999999999999 66666
Q ss_pred ccccccCCccceeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCcc
Q psy7952 96 ADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERA 175 (444)
Q Consensus 96 ~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l 175 (444)
+.++-..-..|.++.++||++|+ .|.-+.+..+... ..+.......+....... .-..+|+|+||+.+
T Consensus 151 Lsrvd~~~~~PQ~iCLaPtrELA--~Q~~eVv~eMGKf-~~ita~yair~sk~~rG~---------~i~eqIviGTPGtv 218 (477)
T KOG0332|consen 151 LSRVDPDVVVPQCICLAPTRELA--PQTGEVVEEMGKF-TELTASYAIRGSKAKRGN---------KLTEQIVIGTPGTV 218 (477)
T ss_pred HHhcCccccCCCceeeCchHHHH--HHHHHHHHHhcCc-eeeeEEEEecCcccccCC---------cchhheeeCCCccH
Confidence 33344445668899999999999 2224444444111 125665555544221111 12358999999998
Q ss_pred ccccHHHHHH-HHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCC
Q psy7952 176 VTESFHYLLQ-HLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNK 254 (444)
Q Consensus 176 ~~~~~~~~~~-~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~ 254 (444)
. +++.. .......+..+|+|||+.+.+-.. |..... ++....|.+.|++++|||.....+......+.-.+
T Consensus 219 ~----Dlm~klk~id~~kikvfVlDEAD~Mi~tqG-~~D~S~---rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n 290 (477)
T KOG0332|consen 219 L----DLMLKLKCIDLEKIKVFVLDEADVMIDTQG-FQDQSI---RIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNAN 290 (477)
T ss_pred H----HHHHHHHhhChhhceEEEecchhhhhhccc-ccccch---hhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCc
Confidence 6 44444 556678899999999999976321 332223 34456777899999999999999888888877777
Q ss_pred CeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------c
Q psy7952 255 PYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------V 324 (444)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~ 324 (444)
++.+.+......++...+........++..+.++.... .-++.||||.++..|.+++..+... +
T Consensus 291 ~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~------tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l 364 (477)
T KOG0332|consen 291 VIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLL------TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDL 364 (477)
T ss_pred eeeeehhhccccchhhheeeccchhhHHHHHHHHHhhh------hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccc
Confidence 77777777778888777777777777776666633322 4678899999999999999999887 8
Q ss_pred CHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCC------CHHHHHHHhccCCCCCCceeEEEEecccc
Q psy7952 325 NKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS------SIPAYYQESGRAGRDGLQSYCRIYHSEHS 398 (444)
Q Consensus 325 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 398 (444)
..++|..++++|+.|..+|||+|+++++|||++.++.||+||+|. +.+.|+||+||+||+|+.|.++-+++.++
T Consensus 365 ~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 365 TVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred hhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccC
Confidence 889999999999999999999999999999999999999999985 78999999999999999999999887654
Q ss_pred h
Q psy7952 399 K 399 (444)
Q Consensus 399 ~ 399 (444)
-
T Consensus 445 s 445 (477)
T KOG0332|consen 445 S 445 (477)
T ss_pred c
Confidence 3
No 39
>KOG0341|consensus
Probab=100.00 E-value=4.7e-42 Score=307.70 Aligned_cols=330 Identities=19% Similarity=0.257 Sum_probs=254.1
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccc-------cCCcc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFIL-------NGNVR 105 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~-------~~~~~ 105 (444)
+..+.+.+++ -|+.. ||++|.+-++.++.| +|++-.|-||||||++ |.+|.+.-.+. ..+-.
T Consensus 178 P~~~L~~lk~-KGI~~-PTpIQvQGlPvvLsG-RDmIGIAfTGSGKTlv--------FvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 178 PKPLLRGLKK-KGIVH-PTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLV--------FVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred CHHHHHHHHh-cCCCC-CCceeecCcceEeec-CceeeEEeecCCceEE--------EeHHHHHHHHHHHhcCccccCCC
Confidence 5677888888 49998 999999999999999 9999999999999999 77777433332 23344
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESF 180 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~ 180 (444)
|-.||+||+++|+ .|..+.++.+ .-+.+.++.....|+.+..++.+.. ..+.+|+|+||++|.
T Consensus 247 P~gLiicPSRELA--rQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v------~~GvHivVATPGRL~---- 314 (610)
T KOG0341|consen 247 PYGLIICPSRELA--RQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV------RRGVHIVVATPGRLM---- 314 (610)
T ss_pred CeeEEEcCcHHHH--HHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH------hcCeeEEEcCcchHH----
Confidence 5669999999999 5556555554 4566778888999999887665554 468999999999986
Q ss_pred HHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEe
Q psy7952 181 HYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK 260 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~ 260 (444)
+.+......+.-.+|+.+||++++.+.| |.. .+..++..|....|.+++|||++.......... +-+|+.+..
T Consensus 315 DmL~KK~~sLd~CRyL~lDEADRmiDmG--FEd---dir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSA--LVKPvtvNV 387 (610)
T KOG0341|consen 315 DMLAKKIMSLDACRYLTLDEADRMIDMG--FED---DIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSA--LVKPVTVNV 387 (610)
T ss_pred HHHHHhhccHHHHHHhhhhhHHHHhhcc--chh---hHHHHHHHHhhhhheeeeeccccHHHHHHHHhh--cccceEEec
Confidence 5556666667778999999999999998 664 444555566666889999999998876655444 346655544
Q ss_pred cCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHH
Q psy7952 261 TSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERS 330 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~ 330 (444)
....-.+ ..+.. +..-.+.+...-.+.+.+.+ ...+++|||..+.+++.+.+.|--+ .++++|.
T Consensus 388 GRAGAAs--ldViQ-evEyVkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~ 461 (610)
T KOG0341|consen 388 GRAGAAS--LDVIQ-EVEYVKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRH 461 (610)
T ss_pred ccccccc--hhHHH-HHHHHHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHH
Confidence 3221111 11110 00011112222233333333 6889999999999999999887555 7899999
Q ss_pred HHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccc
Q psy7952 331 RVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 398 (444)
Q Consensus 331 ~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 398 (444)
..++.|+.|+..|||||++++.|+|+|++.|||+||+|..+++|+||+||+||.|+.|.+.+|+.+..
T Consensus 462 ~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 462 YAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred HHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998653
No 40
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.5e-39 Score=334.37 Aligned_cols=352 Identities=20% Similarity=0.242 Sum_probs=253.9
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHccC-----CcEEEEccCCCcccccccccccceEEeCCCccccccCCcccee
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRT-----HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRN 108 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~-----~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~v 108 (444)
..+.+.+...++|+ +|++|.++++.+..+- .++++++|||||||.+ +.+++ +..+..+ .++
T Consensus 248 ~~~~~~~~~~l~f~--lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~v--------a~~~i-l~~~~~g---~q~ 313 (681)
T PRK10917 248 GELLKKFLASLPFE--LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVV--------AALAA-LAAIEAG---YQA 313 (681)
T ss_pred hHHHHHHHHhCCCC--CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHH--------HHHHH-HHHHHcC---CeE
Confidence 45667777778997 5789999999999862 4799999999999999 55555 3323332 356
Q ss_pred EEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 109 GWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 109 lil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
+|++||++|+ .|+.+.++.+ ..+ +++..++|+....++...+..+. .+.++|+|+||+.+. .
T Consensus 314 lilaPT~~LA--~Q~~~~l~~l~~~~~---i~v~ll~G~~~~~~r~~~~~~l~--~g~~~IvVgT~~ll~---------~ 377 (681)
T PRK10917 314 ALMAPTEILA--EQHYENLKKLLEPLG---IRVALLTGSLKGKERREILEAIA--SGEADIVIGTHALIQ---------D 377 (681)
T ss_pred EEEeccHHHH--HHHHHHHHHHHhhcC---cEEEEEcCCCCHHHHHHHHHHHh--CCCCCEEEchHHHhc---------c
Confidence 9999999999 2223333333 335 89999999999887777776654 457999999987753 2
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCC
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRS 266 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 266 (444)
...+.+++++|+||+|++.. ..+. . +. ..+..+++++|||||.+..... ...+..+...+......+.
T Consensus 378 ~v~~~~l~lvVIDE~Hrfg~---~qr~---~---l~-~~~~~~~iL~~SATp~prtl~~--~~~g~~~~s~i~~~p~~r~ 445 (681)
T PRK10917 378 DVEFHNLGLVIIDEQHRFGV---EQRL---A---LR-EKGENPHVLVMTATPIPRTLAM--TAYGDLDVSVIDELPPGRK 445 (681)
T ss_pred cchhcccceEEEechhhhhH---HHHH---H---HH-hcCCCCCEEEEeCCCCHHHHHH--HHcCCCceEEEecCCCCCC
Confidence 34567899999999999532 1221 1 11 2233488999999997755432 2222222222222222233
Q ss_pred CceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccc--------hHHHHHHHHHhh------------cCH
Q psy7952 267 NLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTRE--------HTTDLADALRRK------------VNK 326 (444)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~--------~~~~l~~~L~~~------------~~~ 326 (444)
++...+... .....+.+.+...+ ..+++++|||+.++ .++.+++.|.+. |++
T Consensus 446 ~i~~~~~~~----~~~~~~~~~i~~~~----~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~ 517 (681)
T PRK10917 446 PITTVVIPD----SRRDEVYERIREEI----AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKP 517 (681)
T ss_pred CcEEEEeCc----ccHHHHHHHHHHHH----HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCH
Confidence 343333322 22233334444443 25789999999654 345566666554 889
Q ss_pred HHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCC-CHHHHHHHhccCCCCCCceeEEEEec-c---cchhh
Q psy7952 327 HERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGLQSYCRIYHS-E---HSKKS 401 (444)
Q Consensus 327 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~-~---~~~~~ 401 (444)
.+|..++++|++|+.+|||||+++++|+|+|++++||+++.|. +...+.||+||+||.|..|+|++++. + ...++
T Consensus 518 ~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~r 597 (681)
T PRK10917 518 AEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARER 597 (681)
T ss_pred HHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHH
Confidence 9999999999999999999999999999999999999999986 57889999999999999999999995 3 35567
Q ss_pred HHHHHhhccchhHHHHHHHHhhHHHHHHHhhhce
Q psy7952 402 LEYVIKTDTSTKREQLELKFKNYLSMLEYCEQGY 435 (444)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (444)
+..+.++....+..+.+.++++..++.....+|.
T Consensus 598 l~~~~~~~dgf~iae~dl~~rg~g~~~g~~q~g~ 631 (681)
T PRK10917 598 LKIMRETNDGFVIAEKDLELRGPGELLGTRQSGL 631 (681)
T ss_pred HHHHHHhcchHHHHHHhHhhCCCccccCceecCC
Confidence 7888888888888888888999999888777774
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.4e-39 Score=342.50 Aligned_cols=322 Identities=22% Similarity=0.308 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC------Cccc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG------NVRS 106 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~------~~~~ 106 (444)
+..+.+.+++ ++.. ||++|.++++.+++| ++++++||||+|||++ +.+|+ ++.+... ....
T Consensus 19 ~~~v~~~~~~--~~~~-~tpiQ~~Ai~~il~g-~nvli~APTGSGKTla--------a~Lpi-l~~l~~~~~~~~~~~~~ 85 (876)
T PRK13767 19 RPYVREWFKE--KFGT-FTPPQRYAIPLIHEG-KNVLISSPTGSGKTLA--------AFLAI-IDELFRLGREGELEDKV 85 (876)
T ss_pred CHHHHHHHHH--ccCC-CCHHHHHHHHHHHcC-CCEEEECCCCCcHHHH--------HHHHH-HHHHHhhccccCCCCCe
Confidence 4555566665 5565 779999999999999 9999999999999999 55555 3223221 1234
Q ss_pred eeEEEcchhhhhcccCccchHhhh------------c--CCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECC
Q psy7952 107 RNGWISPILSSFYLRFRDDKTSIV------------T--GRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTP 172 (444)
Q Consensus 107 ~vlil~P~~~L~~~~q~~~~~~~l------------~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 172 (444)
++||++|+++|+ .++.+.+ . ...+.+.+...+|+....++...+ ...++|+|+||
T Consensus 86 ~~LyIsPtraLa-----~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l------~~~p~IlVtTP 154 (876)
T PRK13767 86 YCLYVSPLRALN-----NDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML------KKPPHILITTP 154 (876)
T ss_pred EEEEEcCHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH------hCCCCEEEecH
Confidence 689999999999 4444322 1 122248899999998877665544 35789999999
Q ss_pred CccccccHHHHHHHH---HhhCCccEEEEeccccccccC--CCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHH
Q psy7952 173 ERAVTESFHYLLQHL---VRYNKLAYIVVDEAHCVSEWG--HDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDII 247 (444)
Q Consensus 173 e~l~~~~~~~~~~~~---~~~~~~~~iViDE~H~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~ 247 (444)
|++. .++... ..+.++++||+||+|.+.+.. ..+...+. ++....+...|++++|||+++. +.+.
T Consensus 155 E~L~-----~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~---rL~~l~~~~~q~IglSATl~~~--~~va 224 (876)
T PRK13767 155 ESLA-----ILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLE---RLEELAGGEFVRIGLSATIEPL--EEVA 224 (876)
T ss_pred HHHH-----HHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHH---HHHHhcCCCCeEEEEecccCCH--HHHH
Confidence 9974 222211 246789999999999997533 22222223 3333334558899999999763 3445
Q ss_pred HHhcC------CCCeEEEecCCCCCCceEEEEEc------ccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHH
Q psy7952 248 SVLKF------NKPYKVFKTSTFRSNLFYDVIFD------DLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTD 315 (444)
Q Consensus 248 ~~l~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~ 315 (444)
.++.. +.+..+..... .......+... .........+...+.+.+. .++++||||||+..|+.
T Consensus 225 ~~L~~~~~~~~~r~~~iv~~~~-~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~----~~~~~LVF~nTr~~ae~ 299 (876)
T PRK13767 225 KFLVGYEDDGEPRDCEIVDARF-VKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK----EHRTTLIFTNTRSGAER 299 (876)
T ss_pred HHhcCccccCCCCceEEEccCC-CccceEEEeccCccccccccchhHHHHHHHHHHHHh----cCCCEEEEeCCHHHHHH
Confidence 55543 22223322211 11111111110 0011112233344444332 36789999999999999
Q ss_pred HHHHHHhh----------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhc
Q psy7952 316 LADALRRK----------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESG 379 (444)
Q Consensus 316 l~~~L~~~----------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~G 379 (444)
++..|.+. +++++|..+++.|++|++++||||+++++|||+|++++||+++.|.|...|+||+|
T Consensus 300 la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiG 379 (876)
T PRK13767 300 VLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIG 379 (876)
T ss_pred HHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcc
Confidence 99998761 88999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-CCceeEEEE
Q psy7952 380 RAGRD-GLQSYCRIY 393 (444)
Q Consensus 380 R~~R~-g~~g~~~~~ 393 (444)
|+||. |..+.+.++
T Consensus 380 RaGR~~g~~~~g~ii 394 (876)
T PRK13767 380 RAGHRLGEVSKGRII 394 (876)
T ss_pred cCCCCCCCCCcEEEE
Confidence 99987 433333333
No 42
>KOG0339|consensus
Probab=100.00 E-value=1.1e-39 Score=301.62 Aligned_cols=336 Identities=16% Similarity=0.235 Sum_probs=276.6
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc-----CCccce
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN-----GNVRSR 107 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~-----~~~~~~ 107 (444)
++.|..+.+.. .|.. ||++|-++++..+.| ++++-.|-||+|||.+ |+.|.+.+ ++. .+..|-
T Consensus 231 DkqLm~airk~-Ey~k-ptpiq~qalptalsg-rdvigIAktgSgktaA--------fi~pm~~h-imdq~eL~~g~gPi 298 (731)
T KOG0339|consen 231 DKQLMTAIRKS-EYEK-PTPIQCQALPTALSG-RDVIGIAKTGSGKTAA--------FIWPMIVH-IMDQPELKPGEGPI 298 (731)
T ss_pred hHHHHHHHhhh-hccc-CCccccccccccccc-ccchheeeccCcchhH--------HHHHHHHH-hcchhhhcCCCCCe
Confidence 45566777765 7776 899999999999999 9999999999999999 88888333 332 245577
Q ss_pred eEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 185 (444)
.+|+|||++|+ .||...++.| ..+ +++..++|+.+.+++..-++ .++.|+|+||++|. +.+..
T Consensus 299 ~vilvPTrela--~Qi~~eaKkf~K~yg---l~~v~~ygGgsk~eQ~k~Lk------~g~EivVaTPgRli----d~Vkm 363 (731)
T KOG0339|consen 299 GVILVPTRELA--SQIFSEAKKFGKAYG---LRVVAVYGGGSKWEQSKELK------EGAEIVVATPGRLI----DMVKM 363 (731)
T ss_pred EEEEeccHHHH--HHHHHHHHHhhhhcc---ceEEEeecCCcHHHHHHhhh------cCCeEEEechHHHH----HHHHh
Confidence 89999999999 6667777888 667 99999999999987766664 58999999999986 66777
Q ss_pred HHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecC--C
Q psy7952 186 HLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTS--T 263 (444)
Q Consensus 186 ~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~--~ 263 (444)
...++.+..|+|+||+++|.+.| |.+++..|.. ...++.|.+++|||....+....+..|. +++.++..+ .
T Consensus 364 Katn~~rvS~LV~DEadrmfdmG--fe~qVrSI~~---hirpdrQtllFsaTf~~kIe~lard~L~--dpVrvVqg~vge 436 (731)
T KOG0339|consen 364 KATNLSRVSYLVLDEADRMFDMG--FEPQVRSIKQ---HIRPDRQTLLFSATFKKKIEKLARDILS--DPVRVVQGEVGE 436 (731)
T ss_pred hcccceeeeEEEEechhhhhccc--cHHHHHHHHh---hcCCcceEEEeeccchHHHHHHHHHHhc--CCeeEEEeehhc
Confidence 77888999999999999999988 8877776654 4556689999999999988888888765 555555443 3
Q ss_pred CCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHH
Q psy7952 264 FRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQ 333 (444)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~ 333 (444)
....+...+........++ ..++..+.+.. ..+++|||+..+..+++++..|.-+ +.+.+|.+++
T Consensus 437 an~dITQ~V~V~~s~~~Kl---~wl~~~L~~f~--S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 437 ANEDITQTVSVCPSEEKKL---NWLLRHLVEFS--SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred cccchhheeeeccCcHHHH---HHHHHHhhhhc--cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHH
Confidence 3445555555555444443 33444444333 5789999999999999999998776 8899999999
Q ss_pred HHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 334 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
.+|+.+...||++|++..+|+|||++..||+||+-.+++.+.||+||.||.|..|.+++++.+.+.+....|..
T Consensus 512 s~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 512 SKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred HHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887776654
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-39 Score=340.35 Aligned_cols=318 Identities=18% Similarity=0.254 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHH-HHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRH-ILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~-~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
+..+.+++++ .|+.. ++++|.++++. +..| +++++++|||+|||++ +.+++ +..+..+ .+++|+
T Consensus 9 p~~~~~~l~~-~g~~~-l~p~Q~~ai~~~~~~g-~nvlv~APTGSGKTli--------a~lai-l~~l~~~---~kal~i 73 (737)
T PRK02362 9 PEGVIEFYEA-EGIEE-LYPPQAEAVEAGLLDG-KNLLAAIPTASGKTLI--------AELAM-LKAIARG---GKALYI 73 (737)
T ss_pred CHHHHHHHHh-CCCCc-CCHHHHHHHHHHHhCC-CcEEEECCCcchHHHH--------HHHHH-HHHHhcC---CcEEEE
Confidence 4577788887 59998 56999999998 5566 9999999999999999 44444 3333333 356999
Q ss_pred cchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH-HHh
Q psy7952 112 SPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH-LVR 189 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~-~~~ 189 (444)
+|+++|+ .|+++.+ .+...++++..++|+...... . ...++|+|+|||++. .+.++ ...
T Consensus 74 ~P~raLa-----~q~~~~~~~~~~~g~~v~~~tGd~~~~~~--~-------l~~~~IiV~Tpek~~-----~llr~~~~~ 134 (737)
T PRK02362 74 VPLRALA-----SEKFEEFERFEELGVRVGISTGDYDSRDE--W-------LGDNDIIVATSEKVD-----SLLRNGAPW 134 (737)
T ss_pred eChHHHH-----HHHHHHHHHhhcCCCEEEEEeCCcCcccc--c-------cCCCCEEEECHHHHH-----HHHhcChhh
Confidence 9999999 6777666 332123889999998754321 1 246799999999973 33332 233
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCC-c
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSN-L 268 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 268 (444)
+.+++++|+||+|.+.+.+ +...+..+...+.......|+|++|||+++ .+.+.++++.... ....+|. +
T Consensus 135 l~~v~lvViDE~H~l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n--~~~la~wl~~~~~-----~~~~rpv~l 205 (737)
T PRK02362 135 LDDITCVVVDEVHLIDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGN--ADELADWLDAELV-----DSEWRPIDL 205 (737)
T ss_pred hhhcCEEEEECccccCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCC--HHHHHHHhCCCcc-----cCCCCCCCC
Confidence 5689999999999997644 455555554444444556899999999976 3466777753210 0111111 0
Q ss_pred eEEEE------Ecc----cchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh---------------
Q psy7952 269 FYDVI------FDD----LLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--------------- 323 (444)
Q Consensus 269 ~~~~~------~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~--------------- 323 (444)
...+. ... ............+...+. .++++||||+|++.|+.++..|...
T Consensus 206 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 281 (737)
T PRK02362 206 REGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE----EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAE 281 (737)
T ss_pred eeeEecCCeeccccccccCCCccchHHHHHHHHHHH----cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 00000 000 000000122233333322 4789999999999998887766421
Q ss_pred -------------------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEE----eC--
Q psy7952 324 -------------------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVH----WG-- 366 (444)
Q Consensus 324 -------------------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~----~~-- 366 (444)
+++.+|..+++.|++|.++|||||+++++|+|+|..++||+ |+
T Consensus 282 ~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~ 361 (737)
T PRK02362 282 LAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGG 361 (737)
T ss_pred HHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCC
Confidence 77899999999999999999999999999999999999996 55
Q ss_pred ---CCCCHHHHHHHhccCCCCCCc--eeEEEEeccc
Q psy7952 367 ---MPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEH 397 (444)
Q Consensus 367 ---~p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~ 397 (444)
.|.+..+|.||+|||||.|.+ |.++++....
T Consensus 362 ~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 362 AGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 588999999999999999875 8888888764
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.4e-38 Score=325.26 Aligned_cols=352 Identities=21% Similarity=0.252 Sum_probs=245.0
Q ss_pred HHHHHHHHHhCCcccCchHHHHHHHHHHccC-----CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeE
Q psy7952 35 ELTAKLKALFGFDSFKCELQKKAIRHILLRT-----HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNG 109 (444)
Q Consensus 35 ~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~-----~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vl 109 (444)
.....+...++|+ +|+.|+++++.++.+- .+.++++|||+|||.+ +.+++ +..+..+ .+++
T Consensus 223 ~~~~~~~~~lpf~--lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~v--------a~l~i-l~~~~~g---~qvl 288 (630)
T TIGR00643 223 ELLTKFLASLPFK--LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLV--------AALAM-LAAIEAG---YQVA 288 (630)
T ss_pred HHHHHHHHhCCCC--CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHH--------HHHHH-HHHHHcC---CcEE
Confidence 3444444457996 5789999999998751 3589999999999999 55554 2223333 3569
Q ss_pred EEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH
Q psy7952 110 WISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL 187 (444)
Q Consensus 110 il~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~ 187 (444)
|++||++|+ .|+.+.+..+ ..+ +++..++|+....++......+. .+.++|+|+||..+. ..
T Consensus 289 ilaPT~~LA--~Q~~~~~~~l~~~~g---i~v~lltg~~~~~~r~~~~~~i~--~g~~~IiVgT~~ll~---------~~ 352 (630)
T TIGR00643 289 LMAPTEILA--EQHYNSLRNLLAPLG---IEVALLTGSLKGKRRKELLETIA--SGQIHLVVGTHALIQ---------EK 352 (630)
T ss_pred EECCHHHHH--HHHHHHHHHHhcccC---cEEEEEecCCCHHHHHHHHHHHh--CCCCCEEEecHHHHh---------cc
Confidence 999999999 2223334443 335 89999999998877766666554 467899999987653 33
Q ss_pred HhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhC--CCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCC
Q psy7952 188 VRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTG--NSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFR 265 (444)
Q Consensus 188 ~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (444)
..+.+++++|+||+|++.. ..+.. +..... ..+++++|||||.+..... ...+..+...+......+
T Consensus 353 ~~~~~l~lvVIDEaH~fg~---~qr~~------l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r 421 (630)
T TIGR00643 353 VEFKRLALVIIDEQHRFGV---EQRKK------LREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGR 421 (630)
T ss_pred ccccccceEEEechhhccH---HHHHH------HHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCC
Confidence 4567899999999999532 12211 222222 2478999999987754332 111111111111111122
Q ss_pred CCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccc--------hHHHHHHHHHhh------------cC
Q psy7952 266 SNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTRE--------HTTDLADALRRK------------VN 325 (444)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~--------~~~~l~~~L~~~------------~~ 325 (444)
..+...+.... ....+...+.+.+. .+++++|||+..+ .++.+++.|... |+
T Consensus 422 ~~i~~~~~~~~----~~~~~~~~i~~~l~----~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~ 493 (630)
T TIGR00643 422 KPITTVLIKHD----EKDIVYEFIEEEIA----KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMK 493 (630)
T ss_pred CceEEEEeCcc----hHHHHHHHHHHHHH----hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence 33333222221 11333333333322 4788999998764 455666666643 88
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCC-CHHHHHHHhccCCCCCCceeEEEEec----ccchh
Q psy7952 326 KHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGLQSYCRIYHS----EHSKK 400 (444)
Q Consensus 326 ~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~----~~~~~ 400 (444)
+.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|. +...|.||+||+||.|..|+|++++. +....
T Consensus 494 ~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~ 573 (630)
T TIGR00643 494 SDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKK 573 (630)
T ss_pred HHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHH
Confidence 99999999999999999999999999999999999999999886 68899999999999999999999992 33344
Q ss_pred hHHHHHhhccchhHHHHHHHHhhHHHHHHHhhhce
Q psy7952 401 SLEYVIKTDTSTKREQLELKFKNYLSMLEYCEQGY 435 (444)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (444)
.+..+..+.......+.+.++++..++....++|.
T Consensus 574 rl~~~~~~~dgf~iae~dl~~Rg~g~~~g~~QsG~ 608 (630)
T TIGR00643 574 RLRVMADTLDGFVIAEEDLELRGPGDLLGTKQSGY 608 (630)
T ss_pred HHHHHHhhcccHHHHHHHHhcCCCcccCCCcccCC
Confidence 56777777777778888888999999988877774
No 45
>KOG0350|consensus
Probab=100.00 E-value=4.9e-39 Score=297.09 Aligned_cols=340 Identities=21% Similarity=0.275 Sum_probs=231.3
Q ss_pred HHHHHHhCCcccCchHHHHHHHHHHcc--------CCcEEEEccCCCcccccccccccceEEeCCCccccccCC-cccee
Q psy7952 38 AKLKALFGFDSFKCELQKKAIRHILLR--------THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN-VRSRN 108 (444)
Q Consensus 38 ~~l~~~~g~~~~~t~~Q~~~~~~~~~~--------~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~-~~~~v 108 (444)
+.+.+ ++++.+. |+|..+++.++.. .+|+.+.||||||||++ |.+|+ .+.+..+. ..-|+
T Consensus 150 q~l~k-~~is~~F-PVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLa--------Y~iPI-VQ~L~~R~v~~LRa 218 (620)
T KOG0350|consen 150 QLLVK-MAISRLF-PVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLA--------YVIPI-VQLLSSRPVKRLRA 218 (620)
T ss_pred HHHHH-hhccccc-chHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceee--------ehhHH-HHHHccCCccceEE
Confidence 34555 3777644 5999999998641 37899999999999999 99999 66666553 33689
Q ss_pred EEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH-H
Q psy7952 109 GWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL-Q 185 (444)
Q Consensus 109 lil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~-~ 185 (444)
+|++|+++|+ .||.+.+..+ ..+ +.|..+.|..+.......+...- .....||+|+||++|. +.+. .
T Consensus 219 vVivPtr~L~--~QV~~~f~~~~~~tg---L~V~~~sgq~sl~~E~~qL~~~~-~~~~~DIlVaTPGRLV----DHl~~~ 288 (620)
T KOG0350|consen 219 VVIVPTRELA--LQVYDTFKRLNSGTG---LAVCSLSGQNSLEDEARQLASDP-PECRIDILVATPGRLV----DHLNNT 288 (620)
T ss_pred EEEeeHHHHH--HHHHHHHHHhccCCc---eEEEecccccchHHHHHHHhcCC-CccccceEEcCchHHH----HhccCC
Confidence 9999999999 4447777777 445 78888888776543333222100 0123599999999985 2222 2
Q ss_pred HHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhh----------------------------C---CCCcEEEE
Q psy7952 186 HLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFT----------------------------G---NSIPIIAL 234 (444)
Q Consensus 186 ~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~----------------------------~---~~~~~v~l 234 (444)
....+.+++++||||+|++.+.. |..++..+..+.+.. . .....+.+
T Consensus 289 k~f~Lk~LrfLVIDEADRll~qs--fQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~ 366 (620)
T KOG0350|consen 289 KSFDLKHLRFLVIDEADRLLDQS--FQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVF 366 (620)
T ss_pred CCcchhhceEEEechHHHHHHHH--HHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhc
Confidence 23346789999999999997643 444333333222211 0 11125666
Q ss_pred eccCCcchHHHHHHHhcCCCC--eEEEecC---CCCC-CceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEec
Q psy7952 235 TATAEPSVKQDIISVLKFNKP--YKVFKTS---TFRS-NLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCR 308 (444)
Q Consensus 235 SAT~~~~~~~~~~~~l~~~~~--~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~ 308 (444)
|||+...-.. + ..+.+..| ..+..+. ...| .+.......+ ...+.-.+...+.. . ...++|+|++
T Consensus 367 satLsqdP~K-l-~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~-~~~kpl~~~~lI~~----~--k~~r~lcf~~ 437 (620)
T KOG0350|consen 367 SATLSQDPSK-L-KDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTE-PKFKPLAVYALITS----N--KLNRTLCFVN 437 (620)
T ss_pred chhhhcChHH-H-hhhhcCCCceEEeecccceeeecChhhhhceeecc-cccchHhHHHHHHH----h--hcceEEEEec
Confidence 7776553222 1 12223333 1111100 0000 0111111100 01111122222222 2 5778999999
Q ss_pred ccchHHHHHHHHHhh--------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHH
Q psy7952 309 TREHTTDLADALRRK--------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAY 374 (444)
Q Consensus 309 s~~~~~~l~~~L~~~--------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~ 374 (444)
+.+.+.+++..|.-. ++...|...+++|..|.+++|||+|++++|+|+-+++.||+||+|.+...|
T Consensus 438 S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~kty 517 (620)
T KOG0350|consen 438 SVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTY 517 (620)
T ss_pred chHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHH
Confidence 999999999988722 778899999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCceeEEEEecccchhhHHHHHhhc
Q psy7952 375 YQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTD 409 (444)
Q Consensus 375 ~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 409 (444)
+||+||++|.|+.|+++.+....+...+.++++..
T Consensus 518 VHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 518 VHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred HHhhcccccccCCceEEEeeccccchHHHHHHHHh
Confidence 99999999999999999999999999999887643
No 46
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-38 Score=293.95 Aligned_cols=310 Identities=17% Similarity=0.248 Sum_probs=229.2
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV- 130 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l- 130 (444)
.||.......+.+ +.+++.|||.|||++|++.+.+++.. ... ++|+++||+.|+ .|+++.+
T Consensus 18 ~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~----------~~~-kvlfLAPTKPLV-----~Qh~~~~~ 79 (542)
T COG1111 18 LYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRW----------FGG-KVLFLAPTKPLV-----LQHAEFCR 79 (542)
T ss_pred HHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHh----------cCC-eEEEecCCchHH-----HHHHHHHH
Confidence 7999999999986 99999999999999987765543221 112 679999999999 7888887
Q ss_pred -cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCC
Q psy7952 131 -TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209 (444)
Q Consensus 131 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~ 209 (444)
..+.+.-.+..++|.....++...+ ...+|+|+||+.+. ..++.+..+..++.++|+||||+-.+.
T Consensus 80 ~v~~ip~~~i~~ltGev~p~~R~~~w-------~~~kVfvaTPQvve----NDl~~Grid~~dv~~lifDEAHRAvGn-- 146 (542)
T COG1111 80 KVTGIPEDEIAALTGEVRPEEREELW-------AKKKVFVATPQVVE----NDLKAGRIDLDDVSLLIFDEAHRAVGN-- 146 (542)
T ss_pred HHhCCChhheeeecCCCChHHHHHHH-------hhCCEEEeccHHHH----hHHhcCccChHHceEEEechhhhccCc--
Confidence 5675667888999999888777666 46789999999997 567788888899999999999996432
Q ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHH--HHHHHhcCCCCeEEEecCCC---CCC---ceEEE---------
Q psy7952 210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQ--DIISVLKFNKPYKVFKTSTF---RSN---LFYDV--------- 272 (444)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~--~~~~~l~~~~~~~~~~~~~~---~~~---~~~~~--------- 272 (444)
+. |-.+.+..-...+++.+++|||||.+.... .+.+.|++.+- ....... ++. +...+
T Consensus 147 -yA--Yv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~v--evrTE~d~DV~~Yv~~~kve~ikV~lp~e~ 221 (542)
T COG1111 147 -YA--YVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKV--EVRTEEDPDVRPYVKKIKVEWIKVDLPEEI 221 (542)
T ss_pred -ch--HHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceE--EEecCCCccHHHhhccceeEEEeccCcHHH
Confidence 22 344444444455668899999998764432 22333333211 0111000 000 00000
Q ss_pred --------------------------------------------------------------------------------
Q psy7952 273 -------------------------------------------------------------------------------- 272 (444)
Q Consensus 273 -------------------------------------------------------------------------------- 272 (444)
T Consensus 222 ~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~ 301 (542)
T COG1111 222 KEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRP 301 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence
Q ss_pred ---------------------------------------EEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchH
Q psy7952 273 ---------------------------------------IFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHT 313 (444)
Q Consensus 273 ---------------------------------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~ 313 (444)
......+.+.+.+.+++.+.+.+. .+.++|||++.+++|
T Consensus 302 ~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~--~~~RvIVFT~yRdTa 379 (542)
T COG1111 302 FYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKN--GDSRVIVFTEYRDTA 379 (542)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcC--CCceEEEEehhHhHH
Confidence 000001111123334444445444 468999999999999
Q ss_pred HHHHHHHHhh-------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHH
Q psy7952 314 TDLADALRRK-------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAY 374 (444)
Q Consensus 314 ~~l~~~L~~~-------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~ 374 (444)
+.++..|.+. |++.++.++++.|+.|+.+|||||+++++|+|||++++||+|++..|..-+
T Consensus 380 e~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~ 459 (542)
T COG1111 380 EEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRS 459 (542)
T ss_pred HHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHH
Confidence 9999999876 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCceeEEEEecccchh
Q psy7952 375 YQESGRAGRDGLQSYCRIYHSEHSKK 400 (444)
Q Consensus 375 ~Qr~GR~~R~g~~g~~~~~~~~~~~~ 400 (444)
+||.||+||. ++|.+++++..+...
T Consensus 460 IQR~GRTGR~-r~Grv~vLvt~gtrd 484 (542)
T COG1111 460 IQRKGRTGRK-RKGRVVVLVTEGTRD 484 (542)
T ss_pred HHhhCccccC-CCCeEEEEEecCchH
Confidence 9999999999 889999998877443
No 47
>KOG0327|consensus
Probab=100.00 E-value=3.6e-39 Score=290.33 Aligned_cols=332 Identities=19% Similarity=0.287 Sum_probs=258.1
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
.+++.+.+-. +||+. |+.+|++|+..+..| .|+.+.+++|+|||.+ |.+++ ++.+-.......++++.
T Consensus 34 ~e~LLrgiy~-yGFek-PSaIQqraI~p~i~G-~dv~~qaqsgTgKt~a--------f~i~i-Lq~iD~~~ke~qalila 101 (397)
T KOG0327|consen 34 KESLLRGIYA-YGFEK-PSAIQQRAILPCIKG-HDVIAQAQSGTGKTAA--------FLISI-LQQIDMSVKETQALILA 101 (397)
T ss_pred CHHHHhHHHh-hccCC-chHHHhccccccccC-CceeEeeeccccchhh--------hHHHH-HhhcCcchHHHHHHHhc
Confidence 4566666665 69998 999999999999999 9999999999999999 88777 44444344556789999
Q ss_pred chhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh
Q psy7952 113 PILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY 190 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~ 190 (444)
|+++|+ .|+...+..+ ..+ .++....|+.........+. ...++|+++||+++. +.+.......
T Consensus 102 PtreLa--~qi~~v~~~lg~~~~---~~v~~~igg~~~~~~~~~i~-----~~~~hivvGTpgrV~----dml~~~~l~~ 167 (397)
T KOG0327|consen 102 PTRELA--QQIQKVVRALGDHMD---VSVHACIGGTNVRREDQALL-----KDKPHIVVGTPGRVF----DMLNRGSLST 167 (397)
T ss_pred chHHHH--HHHHHHHHhhhcccc---eeeeeecCcccchhhhhhhh-----ccCceeecCCchhHH----Hhhccccccc
Confidence 999999 4445555555 445 77887888777654433332 356899999999985 5444554556
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEe--cCCCCCCc
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK--TSTFRSNL 268 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ 268 (444)
..+.++|+||++.+...| |+ ..|..+++..+++.|++++|||.++.....-.++.. +|..+.. .......+
T Consensus 168 ~~iKmfvlDEaDEmLs~g--fk---dqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~--~pv~i~vkk~~ltl~gi 240 (397)
T KOG0327|consen 168 DGIKMFVLDEADEMLSRG--FK---DQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMR--EPVRILVKKDELTLEGI 240 (397)
T ss_pred cceeEEeecchHhhhccc--hH---HHHHHHHHHcCcchhheeecccCcHHHHHHHHHhcc--CceEEEecchhhhhhhe
Confidence 679999999999998877 66 445556667888899999999999988876666654 4444433 33333333
Q ss_pred eEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhc
Q psy7952 269 FYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMR 338 (444)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~ 338 (444)
...+....... +..-+.++.. .-.+.+||||+++.+..+...|... +.+.+|....+.|+.
T Consensus 241 kq~~i~v~k~~-k~~~l~dl~~--------~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~ 311 (397)
T KOG0327|consen 241 KQFYINVEKEE-KLDTLCDLYR--------RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS 311 (397)
T ss_pred eeeeeeccccc-cccHHHHHHH--------hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc
Confidence 33333222212 3333334333 2566799999999999999999666 889999999999999
Q ss_pred CCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHH
Q psy7952 339 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 406 (444)
Q Consensus 339 g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 406 (444)
|..++||+|+.+++|+|+..+..||+|+.|....+|+||+||+||.|.+|.++.++...+...++++.
T Consensus 312 gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie 379 (397)
T KOG0327|consen 312 GSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIE 379 (397)
T ss_pred CCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999998888877775
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.2e-37 Score=331.00 Aligned_cols=351 Identities=19% Similarity=0.182 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHcc-----CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccce
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLR-----THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSR 107 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~-----~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~ 107 (444)
+....+.+...|+|+ +|+.|.++++.++.+ .+++++++|||+|||.+|+. ++ ...+.. ..+
T Consensus 586 ~~~~~~~~~~~~~~~--~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~--------aa-~~~~~~---g~q 651 (1147)
T PRK10689 586 DREQYQLFCDSFPFE--TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMR--------AA-FLAVEN---HKQ 651 (1147)
T ss_pred CHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHH--------HH-HHHHHc---CCe
Confidence 455667777778996 689999999999985 26899999999999998433 22 111222 346
Q ss_pred eEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 185 (444)
++|++||++|+ .|+.+.+ .+....+++..+++..+..++...+..+. .+.++|+|+||+.+ .
T Consensus 652 vlvLvPT~eLA-----~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~--~g~~dIVVgTp~lL---------~ 715 (1147)
T PRK10689 652 VAVLVPTTLLA-----QQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAA--EGKIDILIGTHKLL---------Q 715 (1147)
T ss_pred EEEEeCcHHHH-----HHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHH--hCCCCEEEECHHHH---------h
Confidence 79999999999 4555544 12222378888999888877777666554 35789999998653 2
Q ss_pred HHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCC
Q psy7952 186 HLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFR 265 (444)
Q Consensus 186 ~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (444)
....+.+++++||||+|++ | +.. ...++..+.+++++++||||.+........ ++.++..+......+
T Consensus 716 ~~v~~~~L~lLVIDEahrf---G--~~~-----~e~lk~l~~~~qvLl~SATpiprtl~l~~~--gl~d~~~I~~~p~~r 783 (1147)
T PRK10689 716 SDVKWKDLGLLIVDEEHRF---G--VRH-----KERIKAMRADVDILTLTATPIPRTLNMAMS--GMRDLSIIATPPARR 783 (1147)
T ss_pred CCCCHhhCCEEEEechhhc---c--hhH-----HHHHHhcCCCCcEEEEcCCCCHHHHHHHHh--hCCCcEEEecCCCCC
Confidence 2334678999999999995 3 221 112234556799999999998876654333 345555554443333
Q ss_pred CCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------------cCHHHHHHHH
Q psy7952 266 SNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------------VNKHERSRVQ 333 (444)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------------~~~~~r~~~~ 333 (444)
..+...+.... ........+.++. .+++++||||+++.++.+++.|.+. |+..+|..++
T Consensus 784 ~~v~~~~~~~~----~~~~k~~il~el~-----r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im 854 (1147)
T PRK10689 784 LAVKTFVREYD----SLVVREAILREIL-----RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 854 (1147)
T ss_pred CCceEEEEecC----cHHHHHHHHHHHh-----cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHH
Confidence 33332222211 1111112222222 3678999999999999999999775 8999999999
Q ss_pred HHHhcCCccEEEEcCccccccccCCccEEEEeCCC-CCHHHHHHHhccCCCCCCceeEEEEeccc------chhhHHHHH
Q psy7952 334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMP-SSIPAYYQESGRAGRDGLQSYCRIYHSEH------SKKSLEYVI 406 (444)
Q Consensus 334 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p-~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~------~~~~~~~~~ 406 (444)
.+|++|+.+|||||+++++|+|+|++++||..+.. .+...|+||+||+||.|+.|+|++++.+. ..+++..+.
T Consensus 855 ~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~ 934 (1147)
T PRK10689 855 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 (1147)
T ss_pred HHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHH
Confidence 99999999999999999999999999999955442 46778999999999999999999998543 345555555
Q ss_pred hhcc---chhHHHHHHHHhhHHHHHHHhhhc
Q psy7952 407 KTDT---STKREQLELKFKNYLSMLEYCEQG 434 (444)
Q Consensus 407 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 434 (444)
+... ..+....+.++++..++..--++|
T Consensus 935 ~~~~lg~gf~~a~~dl~~rg~g~~~g~~q~g 965 (1147)
T PRK10689 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 (1147)
T ss_pred HhcCCcchHHHHHHHHHhcCCccCCCCccCC
Confidence 5444 666777777777776665444444
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.5e-38 Score=315.80 Aligned_cols=323 Identities=24% Similarity=0.339 Sum_probs=240.5
Q ss_pred CCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC-----cc
Q psy7952 31 VSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN-----VR 105 (444)
Q Consensus 31 ~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~-----~~ 105 (444)
..+..+.+.++.. |.. ||+.|.+|++.+.+| +|+++.||||+|||++|.++++. .+...+ ..
T Consensus 7 ~l~~~v~~~~~~~--~~~-~t~~Q~~a~~~i~~G-~nvLiiAPTGsGKTeAAfLpil~---------~l~~~~~~~~~~~ 73 (814)
T COG1201 7 ILDPRVREWFKRK--FTS-LTPPQRYAIPEIHSG-ENVLIIAPTGSGKTEAAFLPVIN---------ELLSLGKGKLEDG 73 (814)
T ss_pred hcCHHHHHHHHHh--cCC-CCHHHHHHHHHHhCC-CceEEEcCCCCChHHHHHHHHHH---------HHHhccCCCCCCc
Confidence 3466778888875 666 789999999999999 99999999999999997665443 233331 12
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESF 180 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~ 180 (444)
-.+|+++|.++|. .+...++ ..| +.+...+|+++..++.... .+.+||+++|||+|.
T Consensus 74 i~~lYIsPLkALn-----~Di~~rL~~~~~~~G---~~v~vRhGDT~~~er~r~~------~~PPdILiTTPEsL~---- 135 (814)
T COG1201 74 IYALYISPLKALN-----NDIRRRLEEPLRELG---IEVAVRHGDTPQSEKQKML------KNPPHILITTPESLA---- 135 (814)
T ss_pred eEEEEeCcHHHHH-----HHHHHHHHHHHHHcC---CccceecCCCChHHhhhcc------CCCCcEEEeChhHHH----
Confidence 3689999999999 7888777 556 8889999999988776655 578999999999985
Q ss_pred HHHHH---HHHhhCCccEEEEeccccccc--cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCC-
Q psy7952 181 HYLLQ---HLVRYNKLAYIVVDEAHCVSE--WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNK- 254 (444)
Q Consensus 181 ~~~~~---~~~~~~~~~~iViDE~H~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~- 254 (444)
.++. ....+.++.+|||||+|.+.+ .|.+..-. +.++....+ +.|.+++|||..+. ..+.+++.-..
T Consensus 136 -lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~---LeRL~~l~~-~~qRIGLSATV~~~--~~varfL~g~~~ 208 (814)
T COG1201 136 -ILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALS---LERLRELAG-DFQRIGLSATVGPP--EEVAKFLVGFGD 208 (814)
T ss_pred -HHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhh---HHHHHhhCc-ccEEEeehhccCCH--HHHHHHhcCCCC
Confidence 2222 233467999999999999954 45443333 334443344 69999999999864 45677776554
Q ss_pred CeEEEecCCCCCCceEEEEEcccc----hhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-------
Q psy7952 255 PYKVFKTSTFRSNLFYDVIFDDLL----KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------- 323 (444)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------- 323 (444)
+..+...... .+..+.+...... ..........+.++... ...++||+||+..++.++..|++.
T Consensus 209 ~~~Iv~~~~~-k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~----~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~ 283 (814)
T COG1201 209 PCEIVDVSAA-KKLEIKVISPVEDLIYDEELWAALYERIAELVKK----HRTTLIFTNTRSGAERLAFRLKKLGPDIIEV 283 (814)
T ss_pred ceEEEEcccC-CcceEEEEecCCccccccchhHHHHHHHHHHHhh----cCcEEEEEeChHHHHHHHHHHHHhcCCceee
Confidence 4444433322 2222333222221 12223333444444332 458999999999999999999887
Q ss_pred ----cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCC-CCceeEEEEecc
Q psy7952 324 ----VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD-GLQSYCRIYHSE 396 (444)
Q Consensus 324 ----~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~-g~~g~~~~~~~~ 396 (444)
++.+.|..++++|++|+.+++|||+.++-|||+.+++.||+++.|.++..++||+||+|+. |....++++...
T Consensus 284 HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 284 HHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 8899999999999999999999999999999999999999999999999999999999964 665666665554
No 50
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.9e-38 Score=328.72 Aligned_cols=324 Identities=18% Similarity=0.255 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHH-HHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRH-ILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~-~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
++.+.+.+++ .|++. ++++|.++++. +..| +++++++|||+|||++ +.+++ +..+... ..++|++
T Consensus 9 ~~~~~~~l~~-~g~~~-l~~~Q~~ai~~~~~~g-~nvlv~apTGsGKT~~--------~~l~i-l~~l~~~--~~~~l~l 74 (720)
T PRK00254 9 DERIKRVLKE-RGIEE-LYPPQAEALKSGVLEG-KNLVLAIPTASGKTLV--------AEIVM-VNKLLRE--GGKAVYL 74 (720)
T ss_pred CHHHHHHHHh-CCCCC-CCHHHHHHHHHHHhCC-CcEEEECCCCcHHHHH--------HHHHH-HHHHHhc--CCeEEEE
Confidence 5677888888 59998 56999999987 5666 9999999999999999 54554 2223222 2467999
Q ss_pred cchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH-HHHh
Q psy7952 112 SPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ-HLVR 189 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~-~~~~ 189 (444)
+|+++|+ .++++.+ .+...++++..++|+...... . .+.++|+|+||+++. .+++ ....
T Consensus 75 ~P~~aLa-----~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~-------~~~~~IiV~Tpe~~~-----~ll~~~~~~ 135 (720)
T PRK00254 75 VPLKALA-----EEKYREFKDWEKLGLRVAMTTGDYDSTDE--W-------LGKYDIIIATAEKFD-----SLLRHGSSW 135 (720)
T ss_pred eChHHHH-----HHHHHHHHHHhhcCCEEEEEeCCCCCchh--h-------hccCCEEEEcHHHHH-----HHHhCCchh
Confidence 9999999 6666666 221123889999998764321 1 246899999999963 2332 2234
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCC-c
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSN-L 268 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 268 (444)
+.++++||+||+|.+.+.+ +...+.. ++.....+.|+|++|||+++ ...+.++++.... ....+|. .
T Consensus 136 l~~l~lvViDE~H~l~~~~--rg~~le~---il~~l~~~~qiI~lSATl~n--~~~la~wl~~~~~-----~~~~rpv~l 203 (720)
T PRK00254 136 IKDVKLVVADEIHLIGSYD--RGATLEM---ILTHMLGRAQILGLSATVGN--AEELAEWLNAELV-----VSDWRPVKL 203 (720)
T ss_pred hhcCCEEEEcCcCccCCcc--chHHHHH---HHHhcCcCCcEEEEEccCCC--HHHHHHHhCCccc-----cCCCCCCcc
Confidence 5789999999999997655 3333333 34445566899999999976 3566777764321 1111221 1
Q ss_pred eEEEE------Ecccchhh-HHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHh-------------------
Q psy7952 269 FYDVI------FDDLLKDS-YAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR------------------- 322 (444)
Q Consensus 269 ~~~~~------~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~------------------- 322 (444)
...+. ........ .......+.+.+. .++++||||+|++.|+.++..|.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 279 (720)
T PRK00254 204 RKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK----KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELAD 279 (720)
T ss_pred eeeEecCCeeeccCcchhcchHHHHHHHHHHHH----hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 00000 00100000 1122233333332 367899999999999887655521
Q ss_pred -----------------h-------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEE-------eCCCC-C
Q psy7952 323 -----------------K-------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVH-------WGMPS-S 370 (444)
Q Consensus 323 -----------------~-------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~-------~~~p~-s 370 (444)
. +++++|..+++.|++|.++|||||+++++|+|+|..++||. ++.|. +
T Consensus 280 ~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~ 359 (720)
T PRK00254 280 SLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIP 359 (720)
T ss_pred HHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCC
Confidence 0 88999999999999999999999999999999999999984 34432 5
Q ss_pred HHHHHHHhccCCCCC--CceeEEEEecccc-hhhHHHH
Q psy7952 371 IPAYYQESGRAGRDG--LQSYCRIYHSEHS-KKSLEYV 405 (444)
Q Consensus 371 ~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~-~~~~~~~ 405 (444)
..+|.||+|||||.| ..|.++++....+ .+.+..+
T Consensus 360 ~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~ 397 (720)
T PRK00254 360 VLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERY 397 (720)
T ss_pred HHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHH
Confidence 789999999999975 5688898887654 2334444
No 51
>KOG0334|consensus
Probab=100.00 E-value=1.9e-37 Score=310.95 Aligned_cols=336 Identities=21% Similarity=0.292 Sum_probs=268.9
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc----CCccceeE
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN----GNVRSRNG 109 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~----~~~~~~vl 109 (444)
..+...+++ +|+.. ||++|.+||+++..| +++|.+|-||+|||++ |.+|.+.+.... .+..|-++
T Consensus 374 ~~il~tlkk-l~y~k-~~~IQ~qAiP~ImsG-rdvIgvakTgSGKT~a--------f~LPmirhi~dQr~~~~gdGPi~l 442 (997)
T KOG0334|consen 374 SKILETLKK-LGYEK-PTPIQAQAIPAIMSG-RDVIGVAKTGSGKTLA--------FLLPMIRHIKDQRPLEEGDGPIAL 442 (997)
T ss_pred HHHHHHHHH-hcCCC-CcchhhhhcchhccC-cceEEeeccCCccchh--------hhcchhhhhhcCCChhhCCCceEE
Confidence 445555565 69998 889999999999999 9999999999999999 999994332222 23457889
Q ss_pred EEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH
Q psy7952 110 WISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL 187 (444)
Q Consensus 110 il~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~ 187 (444)
|++||++|+ .|+...+..| ..+ +.++...|+.........+ ..++.|+||||+++. +.+..+.
T Consensus 443 i~aPtrela--~QI~r~~~kf~k~l~---ir~v~vygg~~~~~qiael------kRg~eIvV~tpGRmi----D~l~~n~ 507 (997)
T KOG0334|consen 443 ILAPTRELA--MQIHREVRKFLKLLG---IRVVCVYGGSGISQQIAEL------KRGAEIVVCTPGRMI----DILCANS 507 (997)
T ss_pred EEcCCHHHH--HHHHHHHHHHHhhcC---ceEEEecCCccHHHHHHHH------hcCCceEEeccchhh----hhHhhcC
Confidence 999999999 5557777777 445 9999999998877655444 356999999999975 4444444
Q ss_pred HhhCCc---cEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec--C
Q psy7952 188 VRYNKL---AYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT--S 262 (444)
Q Consensus 188 ~~~~~~---~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~--~ 262 (444)
....++ .++|+||+|++.+.+ |.+.... +++..+...|.+++|||.+..++......+. .|+.+... +
T Consensus 508 grvtnlrR~t~lv~deaDrmfdmg--fePq~~~---Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~--~Pveiiv~~~s 580 (997)
T KOG0334|consen 508 GRVTNLRRVTYLVLDEADRMFDMG--FEPQITR---ILQNLRPDRQTVLFSATFPRSMEALARKVLK--KPVEIIVGGRS 580 (997)
T ss_pred Cccccccccceeeechhhhhheec--cCcccch---HHhhcchhhhhhhhhhhhhHHHHHHHHHhhc--CCeeEEEccce
Confidence 444444 599999999999877 6665554 4455577799999999999987776666665 45444433 3
Q ss_pred CCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHH
Q psy7952 263 TFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRV 332 (444)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~ 332 (444)
.....+...+........+...+.+++.+.. ...++||||.+.+.|..+.+.|.+. .+..+|..+
T Consensus 581 vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~-----e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~st 655 (997)
T KOG0334|consen 581 VVCKEVTQVVRVCAIENEKFLKLLELLGERY-----EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSST 655 (997)
T ss_pred eEeccceEEEEEecCchHHHHHHHHHHHHHh-----hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhH
Confidence 3445566666666666777777777777653 3789999999999999999998866 678999999
Q ss_pred HHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 333 QESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 333 ~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
++.|++|.+.+||+|+.+++|+|++++..||+|+.|.-.+.|+||.||+||.|..|.+++|+.+++......|.+
T Consensus 656 i~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~ 730 (997)
T KOG0334|consen 656 IEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCK 730 (997)
T ss_pred HHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999977766665554
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.2e-36 Score=306.43 Aligned_cols=329 Identities=14% Similarity=0.118 Sum_probs=216.1
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcc
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISP 113 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P 113 (444)
+++.+.++...||+ ||+||.++++.++.|..++++.+|||||||.++.+ |.++. ........++++++|
T Consensus 2 ~~f~~ff~~~~G~~--PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aa-----fll~~----~~~~~~~~rLv~~vP 70 (844)
T TIGR02621 2 LKFDEWYQGLHGYS--PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAA-----WLLAV----EIGAKVPRRLVYVVN 70 (844)
T ss_pred chHHHHHHHHhCCC--CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHH-----hhccc----cccccccceEEEeCc
Confidence 35678888888999 68899999999999944788899999999986221 23322 222222235566789
Q ss_pred hhhhhcccCccchHhhh--cCC--------------------CCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEEC
Q psy7952 114 ILSSFYLRFRDDKTSIV--TGR--------------------SDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVT 171 (444)
Q Consensus 114 ~~~L~~~~q~~~~~~~l--~~~--------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 171 (444)
+++|+ .|+.+.++.+ ... ...+++..+.|+....... ..+..+++|+|+|
T Consensus 71 tReLa--~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~------~~l~~~p~IIVgT 142 (844)
T TIGR02621 71 RRTVV--DQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW------MLDPHRPAVIVGT 142 (844)
T ss_pred hHHHH--HHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH------HhcCCCCcEEEEC
Confidence 99999 4446666666 221 1248899999998876443 3345688999999
Q ss_pred CCccccccHH--------HHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCC--CCcEEEEeccCCcc
Q psy7952 172 PERAVTESFH--------YLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGN--SIPIIALTATAEPS 241 (444)
Q Consensus 172 pe~l~~~~~~--------~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~v~lSAT~~~~ 241 (444)
++.+.+..+. ..--+...++++.++|+|||| ++.+ |...+..|.+.....+. ..|+++||||++..
T Consensus 143 ~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~e 218 (844)
T TIGR02621 143 VDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTD 218 (844)
T ss_pred HHHHcCCccccccccccccccchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCcc
Confidence 8877543210 000011236789999999999 3445 77666666554211111 25899999999876
Q ss_pred hHHHHHHHhcCCCCeEEEec--CCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHH
Q psy7952 242 VKQDIISVLKFNKPYKVFKT--STFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADA 319 (444)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~ 319 (444)
..+...... .++..+... ......+.. +.... ...+...+...+...+. ..++++||||||++.|+.+++.
T Consensus 219 i~~l~~~~~--~~p~~i~V~~~~l~a~ki~q-~v~v~-~e~Kl~~lv~~L~~ll~---e~g~~vLVF~NTv~~Aq~L~~~ 291 (844)
T TIGR02621 219 GPDRTTLLS--AEDYKHPVLKKRLAAKKIVK-LVPPS-DEKFLSTMVKELNLLMK---DSGGAILVFCRTVKHVRKVFAK 291 (844)
T ss_pred HHHHHHHHc--cCCceeecccccccccceEE-EEecC-hHHHHHHHHHHHHHHHh---hCCCcEEEEECCHHHHHHHHHH
Confidence 655433332 233222211 111112221 11111 11222222222222222 2467899999999999999999
Q ss_pred HHhh--------cCHHHHH-----HHHHHHhc----CC-------ccEEEEcCccccccccCCccEEEEeCCCCCHHHHH
Q psy7952 320 LRRK--------VNKHERS-----RVQESFMR----GE-------INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY 375 (444)
Q Consensus 320 L~~~--------~~~~~r~-----~~~~~f~~----g~-------~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~ 375 (444)
|.+. |.+.+|. .+++.|++ |. .+|||||+++++|+||+. ++||+...| .+.|+
T Consensus 292 L~~~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyI 368 (844)
T TIGR02621 292 LPKEKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQ 368 (844)
T ss_pred HHhcCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHH
Confidence 9876 7889999 77889987 44 689999999999999986 888887666 79999
Q ss_pred HHhccCCCCCCc-eeEEEEec
Q psy7952 376 QESGRAGRDGLQ-SYCRIYHS 395 (444)
Q Consensus 376 Qr~GR~~R~g~~-g~~~~~~~ 395 (444)
||+||+||.|+. +..+.++.
T Consensus 369 QRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 369 QRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred HHhcccCCCCCCCCceEEEEe
Confidence 999999999885 33355553
No 53
>KOG0329|consensus
Probab=100.00 E-value=4.9e-38 Score=267.19 Aligned_cols=322 Identities=16% Similarity=0.216 Sum_probs=245.7
Q ss_pred CCCCCcCCCCCCCCCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcc
Q psy7952 18 SLTGNQQDRKGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGAD 97 (444)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~ 97 (444)
++..-.....+..+...++.+++-+ .||+. |++.|+++++...-| .++++.|..|.|||.+ |.+.. ++
T Consensus 35 syv~ihssgfrdfllkpellraivd-cgfeh-psevqhecipqailg-mdvlcqaksgmgktav--------fvl~t-lq 102 (387)
T KOG0329|consen 35 SYVSIHSSGFRDFLLKPELLRAIVD-CGFEH-PSEVQHECIPQAILG-MDVLCQAKSGMGKTAV--------FVLAT-LQ 102 (387)
T ss_pred cEEEEeccchhhhhcCHHHHHHHHh-ccCCC-chHhhhhhhhHHhhc-chhheecccCCCceee--------eehhh-hh
Confidence 3444444455566678888899988 69998 999999999999999 9999999999999999 88888 66
Q ss_pred ccccCCccceeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCcccc
Q psy7952 98 FILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVT 177 (444)
Q Consensus 98 ~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~ 177 (444)
.+..-...-.++++|.|++|+ -|+.+...++....+.+++..+.|+.......+.+. +.++|+|+||+++.
T Consensus 103 qiepv~g~vsvlvmchtrela--fqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk------~~PhivVgTPGril- 173 (387)
T KOG0329|consen 103 QIEPVDGQVSVLVMCHTRELA--FQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK------NCPHIVVGTPGRIL- 173 (387)
T ss_pred hcCCCCCeEEEEEEeccHHHH--HHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh------CCCeEEEcCcHHHH-
Confidence 666655555789999999999 444777778866777799999999999887777663 57899999999985
Q ss_pred ccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeE
Q psy7952 178 ESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYK 257 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~ 257 (444)
........+++++..+|+|||+.++++- +++ ..+..+.+..|...|+..+|||++........++ +.+|+.
T Consensus 174 ---ALvr~k~l~lk~vkhFvlDEcdkmle~l-DMr---RDvQEifr~tp~~KQvmmfsatlskeiRpvC~kF--mQdPmE 244 (387)
T KOG0329|consen 174 ---ALVRNRSLNLKNVKHFVLDECDKMLEQL-DMR---RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKF--MQDPME 244 (387)
T ss_pred ---HHHHhccCchhhcceeehhhHHHHHHHH-HHH---HHHHHHhhcCcccceeeeeeeecchhhHHHHHhh--hcCchh
Confidence 4445556678899999999999987643 244 4455666678888999999999999877765555 457777
Q ss_pred EEecCCCCCCceE--EEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhhcCHHHHHHHHHH
Q psy7952 258 VFKTSTFRSNLFY--DVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKHERSRVQES 335 (444)
Q Consensus 258 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~r~~~~~~ 335 (444)
++..+.......- +.........+...+.+++..+ ...+++||+.|+....
T Consensus 245 i~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~L------eFNQVvIFvKsv~Rl~--------------------- 297 (387)
T KOG0329|consen 245 IFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVL------EFNQVVIFVKSVQRLS--------------------- 297 (387)
T ss_pred hhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhh------hhcceeEeeehhhhhh---------------------
Confidence 7766543322110 0011111223333444444443 5788999999866411
Q ss_pred HhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchh
Q psy7952 336 FMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 400 (444)
Q Consensus 336 f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 400 (444)
| ..+ +|||+.+++|+|+..++.+++||+|.+.++|+||+|||||.|..|.++.+++.++..
T Consensus 298 f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da 358 (387)
T KOG0329|consen 298 F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 358 (387)
T ss_pred h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhH
Confidence 2 233 899999999999999999999999999999999999999999999999999866543
No 54
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=9e-37 Score=316.30 Aligned_cols=356 Identities=20% Similarity=0.273 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
+..+.+.++. .|++ ++++|.++++.+.++ +++++++|||+|||+++.+ ++ +..+..+ .++++++
T Consensus 9 ~~~~~~~~~~-~~~~--l~~~Q~~ai~~l~~~-~nvlv~apTGSGKTl~a~l--------ai-l~~l~~~---~k~v~i~ 72 (674)
T PRK01172 9 DDEFLNLFTG-NDFE--LYDHQRMAIEQLRKG-ENVIVSVPTAAGKTLIAYS--------AI-YETFLAG---LKSIYIV 72 (674)
T ss_pred CHHHHHHHhh-CCCC--CCHHHHHHHHHHhcC-CcEEEECCCCchHHHHHHH--------HH-HHHHHhC---CcEEEEe
Confidence 4556777776 4777 358999999999888 9999999999999999443 33 2223333 3569999
Q ss_pred chhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH-HHhh
Q psy7952 113 PILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH-LVRY 190 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~-~~~~ 190 (444)
|+++|+ .++.+.+ .+...++++...+|+...... . ...++|+|+||+++. .+... ...+
T Consensus 73 P~raLa-----~q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~-------~~~~dIiv~Tpek~~-----~l~~~~~~~l 133 (674)
T PRK01172 73 PLRSLA-----MEKYEELSRLRSLGMRVKISIGDYDDPPD--F-------IKRYDVVILTSEKAD-----SLIHHDPYII 133 (674)
T ss_pred chHHHH-----HHHHHHHHHHhhcCCeEEEEeCCCCCChh--h-------hccCCEEEECHHHHH-----HHHhCChhHH
Confidence 999999 5666655 221122788888887654321 1 136799999999863 33332 2346
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCC-ce
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSN-LF 269 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~ 269 (444)
.++++||+||+|.+.+.+ +...+..+.......+.+.|+|++|||+++. ..+.++++... +. ...++. +.
T Consensus 134 ~~v~lvViDEaH~l~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~----~~-~~~r~vpl~ 204 (674)
T PRK01172 134 NDVGLIVADEIHIIGDED--RGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASL----IK-SNFRPVPLK 204 (674)
T ss_pred hhcCEEEEecchhccCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCc----cC-CCCCCCCeE
Confidence 789999999999987654 3444555554444555668999999999753 45677765321 11 111211 11
Q ss_pred EEEEE-----cccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh---------------------
Q psy7952 270 YDVIF-----DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--------------------- 323 (444)
Q Consensus 270 ~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~--------------------- 323 (444)
..+.. ..........+...+.+.. ..++++||||++++.++.++..|...
T Consensus 205 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L 280 (674)
T PRK01172 205 LGILYRKRLILDGYERSQVDINSLIKETV----NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSL 280 (674)
T ss_pred EEEEecCeeeecccccccccHHHHHHHHH----hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHH
Confidence 11111 0000001111223333322 24789999999999999998877531
Q ss_pred --------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCC---------CCCHHHHHHHhcc
Q psy7952 324 --------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGM---------PSSIPAYYQESGR 380 (444)
Q Consensus 324 --------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~---------p~s~~~~~Qr~GR 380 (444)
++.++|..+++.|++|.++|||||+++++|+|+|+..+|| .+. |.|..+|.||+||
T Consensus 281 ~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GR 359 (674)
T PRK01172 281 NEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGR 359 (674)
T ss_pred HHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhc
Confidence 7789999999999999999999999999999999865554 332 5688999999999
Q ss_pred CCCCCC--ceeEEEEeccc-chhhHHHHHh-hccchhH-------------HHHHH-HHhhHHHHHHHhhhceee
Q psy7952 381 AGRDGL--QSYCRIYHSEH-SKKSLEYVIK-TDTSTKR-------------EQLEL-KFKNYLSMLEYCEQGYFL 437 (444)
Q Consensus 381 ~~R~g~--~g~~~~~~~~~-~~~~~~~~~~-~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~ 437 (444)
|||.|. .|.++++.... +...+++++. .+.+.+. ..+-. ...+..+.++|....|+.
T Consensus 360 AGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~ 434 (674)
T PRK01172 360 AGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMA 434 (674)
T ss_pred CCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhH
Confidence 999985 56677776544 3555666653 3222110 11111 234567788887776664
No 55
>KOG0952|consensus
Probab=100.00 E-value=5e-36 Score=298.52 Aligned_cols=374 Identities=18% Similarity=0.241 Sum_probs=268.0
Q ss_pred HHHHHHHHH-HHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 33 EQELTAKLK-ALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 33 ~~~~~~~l~-~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
-.++....+ ..|+|..|. .+|.++++.++..+.|++|+||||+|||.+|++.|+..+-- . ..........-|++++
T Consensus 94 isdld~~~rk~~f~f~~fN-~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~-~-~~~~~i~k~~fKiVYI 170 (1230)
T KOG0952|consen 94 ISDLDDVGRKGFFSFEEFN-RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKE-H-EEQGDIAKDDFKIVYI 170 (1230)
T ss_pred EEecchhhhhhcccHHHHH-HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHh-h-ccccccccCCceEEEE
Confidence 445555554 667889866 79999999999988999999999999999977665431100 0 0000001122478999
Q ss_pred cchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH---
Q psy7952 112 SPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH--- 186 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~--- 186 (444)
+|+++|+ .+.++.+ ++..-++.|..++|++.....+ + .+++|+|+|||+.- -..+.
T Consensus 171 aPmKALa-----~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i--------~~tqiiVTTPEKwD-----vvTRk~~~ 231 (1230)
T KOG0952|consen 171 APMKALA-----AEMVDKFSKKLAPLGISVRELTGDTQLTKTE-I--------ADTQIIVTTPEKWD-----VVTRKSVG 231 (1230)
T ss_pred echHHHH-----HHHHHHHhhhcccccceEEEecCcchhhHHH-H--------HhcCEEEeccccee-----eeeeeecc
Confidence 9999999 8999988 4444459999999999876554 2 26899999999952 22222
Q ss_pred -HHhhCCccEEEEeccccccc-cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEE-ecCC
Q psy7952 187 -LVRYNKLAYIVVDEAHCVSE-WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVF-KTST 263 (444)
Q Consensus 187 -~~~~~~~~~iViDE~H~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~-~~~~ 263 (444)
...+..+++|||||+|.+.+ .|......+.+..++........++|++|||+|+ ..++..+++.+....++ ....
T Consensus 232 d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN--~eDvA~fL~vn~~~glfsFd~~ 309 (1230)
T KOG0952|consen 232 DSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPN--YEDVARFLRVNPYAGLFSFDQR 309 (1230)
T ss_pred chhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCC--HHHHHHHhcCCCccceeeeccc
Confidence 23456789999999999966 4655666666666665556667899999999987 45789999876333222 2223
Q ss_pred CCCC-ceEEEEEccc----------chhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh---------
Q psy7952 264 FRSN-LFYDVIFDDL----------LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--------- 323 (444)
Q Consensus 264 ~~~~-~~~~~~~~~~----------~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~--------- 323 (444)
.||- +...+.-... ....++.+.+++. .+++++|||++++.+.+.|+.|.+.
T Consensus 310 yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--------~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~ 381 (1230)
T KOG0952|consen 310 YRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--------EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDL 381 (1230)
T ss_pred ccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH--------cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccc
Confidence 3332 2222221111 1122233333333 4999999999999999999988776
Q ss_pred ------------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCC-----------
Q psy7952 324 ------------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMP----------- 368 (444)
Q Consensus 324 ------------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p----------- 368 (444)
+..++|..+++.|..|.++||+||..+..|+|+|+-.++| -|.+
T Consensus 382 f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViI-KGT~~ydsskg~f~d 460 (1230)
T KOG0952|consen 382 FLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVII-KGTQVYDSSKGSFVD 460 (1230)
T ss_pred cCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEe-cCCcccccccCceee
Confidence 7788999999999999999999999999999999544444 3332
Q ss_pred CCHHHHHHHhccCCCC--CCceeEEEEecccchhhHHHHHhhccchhHHHHHHHH------------hhHHHHHHHhhhc
Q psy7952 369 SSIPAYYQESGRAGRD--GLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKF------------KNYLSMLEYCEQG 434 (444)
Q Consensus 369 ~s~~~~~Qr~GR~~R~--g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 434 (444)
.++.+.+|..|||||. +..|.++++.+.+...++..++...-+.+..-...-+ .+.++-++|....
T Consensus 461 lgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yT 540 (1230)
T KOG0952|consen 461 LGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYT 540 (1230)
T ss_pred ehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhce
Confidence 1577889999999996 5679999999999999999998877766655444333 4556778888888
Q ss_pred eeeee
Q psy7952 435 YFLVI 439 (444)
Q Consensus 435 ~~~~~ 439 (444)
|++.-
T Consensus 541 ylYVR 545 (1230)
T KOG0952|consen 541 YLYVR 545 (1230)
T ss_pred eEEEE
Confidence 87653
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.7e-36 Score=323.81 Aligned_cols=291 Identities=22% Similarity=0.295 Sum_probs=202.2
Q ss_pred EEccCCCcccccccccccceEEeCCCccccccC----------CccceeEEEcchhhhhcccCccchHhhhc--------
Q psy7952 70 VSMPTGAVSLVGSVVSARSRVRIPPGADFILNG----------NVRSRNGWISPILSSFYLRFRDDKTSIVT-------- 131 (444)
Q Consensus 70 i~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~----------~~~~~vlil~P~~~L~~~~q~~~~~~~l~-------- 131 (444)
|++|||||||++ +.+|+ ++.+... ....++|||+|+++|+ .++.+.+.
T Consensus 1 V~APTGSGKTLA--------A~Lpa-L~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa-----~Dv~~~L~~pl~~i~~ 66 (1490)
T PRK09751 1 VIAPTGSGKTLA--------AFLYA-LDRLFREGGEDTREAHKRKTSRILYISPIKALG-----TDVQRNLQIPLKGIAD 66 (1490)
T ss_pred CcCCCCcHHHHH--------HHHHH-HHHHHhcccccccccccCCCCEEEEEeChHHHH-----HHHHHHHHHHHHhhhh
Confidence 579999999999 55555 3333321 1235789999999999 45444431
Q ss_pred ----CC--CCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH-HHhhCCccEEEEeccccc
Q psy7952 132 ----GR--SDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH-LVRYNKLAYIVVDEAHCV 204 (444)
Q Consensus 132 ----~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~-~~~~~~~~~iViDE~H~~ 204 (444)
++ ...+++...+|+.+..++.... .+.++|+|+|||++. ..+.+. ...+.++++|||||+|.+
T Consensus 67 ~~~~~g~~~~~i~V~vrtGDt~~~eR~rll------~~ppdILVTTPEsL~----~LLtsk~r~~L~~Vr~VIVDE~H~L 136 (1490)
T PRK09751 67 ERRRRGETEVNLRVGIRTGDTPAQERSKLT------RNPPDILITTPESLY----LMLTSRARETLRGVETVIIDEVHAV 136 (1490)
T ss_pred hhhhcccccCceEEEEEECCCCHHHHHHHh------cCCCCEEEecHHHHH----HHHhhhhhhhhccCCEEEEecHHHh
Confidence 11 1248999999999888765554 357899999999984 222222 235789999999999999
Q ss_pred cc--cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCC-CceEEEEEcccch--
Q psy7952 205 SE--WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRS-NLFYDVIFDDLLK-- 279 (444)
Q Consensus 205 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-- 279 (444)
.+ .|.++...+..|.. ..+.+.|+|++|||+.+. +.+.++++...+..++.....++ .+.+.+.......
T Consensus 137 ~g~kRG~~Lel~LeRL~~---l~~~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~ 211 (1490)
T PRK09751 137 AGSKRGAHLALSLERLDA---LLHTSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVS 211 (1490)
T ss_pred cccccccHHHHHHHHHHH---hCCCCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhcc
Confidence 75 35555555555544 345568999999999873 46778886555555544333222 2222111111000
Q ss_pred ----------------hhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHh---------------------
Q psy7952 280 ----------------DSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR--------------------- 322 (444)
Q Consensus 280 ----------------~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~--------------------- 322 (444)
.....+...+...+ ..+.++||||||+..|+.++..|++
T Consensus 212 ~~~~~~~~~~~~~r~~~i~~~v~~~il~~i----~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~ 287 (1490)
T PRK09751 212 SVASGTGEDSHAGREGSIWPYIETGILDEV----LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFES 287 (1490)
T ss_pred ccccccccccchhhhhhhhHHHHHHHHHHH----hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhh
Confidence 00001111111111 1367899999999999999887753
Q ss_pred -----------------h-----cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhcc
Q psy7952 323 -----------------K-----VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380 (444)
Q Consensus 323 -----------------~-----~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR 380 (444)
. +++++|..+++.|++|++++||||++++.|||++++++||+++.|.|+.+|+||+||
T Consensus 288 ~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGR 367 (1490)
T PRK09751 288 TSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGR 367 (1490)
T ss_pred ccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCC
Confidence 0 789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CCceeEEEE
Q psy7952 381 AGRD-GLQSYCRIY 393 (444)
Q Consensus 381 ~~R~-g~~g~~~~~ 393 (444)
+||. |..+.++++
T Consensus 368 AGR~~gg~s~gli~ 381 (1490)
T PRK09751 368 AGHQVGGVSKGLFF 381 (1490)
T ss_pred CCCCCCCccEEEEE
Confidence 9997 334455533
No 57
>KOG0344|consensus
Probab=100.00 E-value=5.7e-37 Score=289.95 Aligned_cols=343 Identities=20% Similarity=0.244 Sum_probs=245.6
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC-----Cccce
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG-----NVRSR 107 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~-----~~~~~ 107 (444)
+..+.+.+... ||.. ||+.|.++++.++.+ ++++.++|||+|||++ |.+|+ +..+... ...-+
T Consensus 144 ~~~ll~nl~~~-~F~~-Pt~iq~~aipvfl~~-r~~lAcapTGsgKtla--------f~~Pi-l~~L~~~~~~~~~~gl~ 211 (593)
T KOG0344|consen 144 NKRLLENLQEL-GFDE-PTPIQKQAIPVFLEK-RDVLACAPTGSGKTLA--------FNLPI-LQHLKDLSQEKHKVGLR 211 (593)
T ss_pred cHHHHHhHhhC-CCCC-CCcccchhhhhhhcc-cceEEeccCCCcchhh--------hhhHH-HHHHHHhhcccCccceE
Confidence 44455555553 8998 899999999999999 9999999999999999 99998 4444332 23358
Q ss_pred eEEEcchhhhhcccCccchHhhhc-CCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIVT-GRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
++|+.|+++|+ .|+...+..+. ..+..+.+..+.............. ...++|+++||-++. ..+-..
T Consensus 212 a~Il~ptreLa--~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~-----~~k~dili~TP~ri~----~~~~~~ 280 (593)
T KOG0344|consen 212 ALILSPTRELA--AQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLS-----DEKYDILISTPMRIV----GLLGLG 280 (593)
T ss_pred EEEecchHHHH--HHHHHHHHhcCCCCCCchhhhhcccccchhhccchhH-----HHHHHHHhcCHHHHH----HHhcCC
Confidence 89999999999 33344444442 1222244444443322222211111 236799999999964 111111
Q ss_pred H--HhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCC
Q psy7952 187 L--VRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF 264 (444)
Q Consensus 187 ~--~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (444)
. ..+..+..+|+||++.+.+. ..|..++..|...++. ++..+=++|||.+..+.+...........+.+...+..
T Consensus 281 ~~~idl~~V~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s--~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa 357 (593)
T KOG0344|consen 281 KLNIDLSKVEWLVVDEADLLFEP-EFFVEQLADIYSACQS--PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA 357 (593)
T ss_pred CccchhheeeeEeechHHhhhCh-hhHHHHHHHHHHHhcC--cchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH
Confidence 1 35678899999999999876 2277666666554443 44777799999998887765554433333333333222
Q ss_pred CCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----------cCHHHHHHHH
Q psy7952 265 RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-----------VNKHERSRVQ 333 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-----------~~~~~r~~~~ 333 (444)
...+.....+.-....+.-. +.+++... -..+++||+.+.+.|.+|+..|... .++.+|..++
T Consensus 358 ~~~V~QelvF~gse~~K~lA----~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 358 NETVDQELVFCGSEKGKLLA----LRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred hhhhhhhheeeecchhHHHH----HHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHH
Confidence 22333333343333333333 34444333 4789999999999999999999411 6889999999
Q ss_pred HHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 334 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
++|+.|++.+|+||+++++|+|+.++++||+||+|.+...|+||+||+||.|+.|.+++||...+...++.+..
T Consensus 432 ~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 432 ERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred HHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777753
No 58
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=8.9e-36 Score=304.38 Aligned_cols=319 Identities=19% Similarity=0.275 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
.+.+.+.++. .|+..+. +.|++++.+.+-+++|+++++|||+|||++|+++|++ .+.++ ..+++++|
T Consensus 17 ~~~v~~i~~~-~~~~el~-~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~---------~l~~~--~~k~vYiv 83 (766)
T COG1204 17 DDRVLEILKG-DGIDELF-NPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILS---------TLLEG--GGKVVYIV 83 (766)
T ss_pred cHHHHHHhcc-CChHHhh-HHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHH---------HHHhc--CCcEEEEe
Confidence 4445555554 5776544 4577776666655599999999999999997765443 13322 23459999
Q ss_pred chhhhhcccCccchHhhh----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH
Q psy7952 113 PILSSFYLRFRDDKTSIV----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV 188 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~ 188 (444)
|+++|+ .+.++.+ .+| +++...+|+...... . ..+++|+|+|||++- ...++..
T Consensus 84 PlkALa-----~Ek~~~~~~~~~~G---irV~~~TgD~~~~~~--~-------l~~~~ViVtT~EK~D-----sl~R~~~ 141 (766)
T COG1204 84 PLKALA-----EEKYEEFSRLEELG---IRVGISTGDYDLDDE--R-------LARYDVIVTTPEKLD-----SLTRKRP 141 (766)
T ss_pred ChHHHH-----HHHHHHhhhHHhcC---CEEEEecCCcccchh--h-------hccCCEEEEchHHhh-----HhhhcCc
Confidence 999999 7777777 456 999999999875431 1 258899999999973 3343332
Q ss_pred -hhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy7952 189 -RYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSN 267 (444)
Q Consensus 189 -~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 267 (444)
-...+++||+||+|.+.+... .+.+..+...........+++++|||+++. ..+..+++-.......+.......
T Consensus 142 ~~~~~V~lvViDEiH~l~d~~R--G~~lE~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~ 217 (766)
T COG1204 142 SWIEEVDLVVIDEIHLLGDRTR--GPVLESIVARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRG 217 (766)
T ss_pred chhhcccEEEEeeeeecCCccc--CceehhHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccC
Confidence 345799999999999976421 122333332222333338999999999874 577888876543223333222222
Q ss_pred ceEEEE--Ecccch-----hhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----------------
Q psy7952 268 LFYDVI--FDDLLK-----DSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------------- 323 (444)
Q Consensus 268 ~~~~~~--~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------------- 323 (444)
+.+... ...... .........+... ...+++++|||+|+..+...+..+...
T Consensus 218 v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~----~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a 293 (766)
T COG1204 218 VPYVGAFLGADGKKKTWPLLIDNLALELVLES----LAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGA 293 (766)
T ss_pred CccceEEEEecCccccccccchHHHHHHHHHH----HhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccc
Confidence 222211 111111 1122223333333 236899999999999999999999842
Q ss_pred ------------------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEE----EeC---
Q psy7952 324 ------------------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVV----HWG--- 366 (444)
Q Consensus 324 ------------------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi----~~~--- 366 (444)
++.++|..+++.|+.|.++||+||++++.|+|+|.-.+|| .++
T Consensus 294 ~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~ 373 (766)
T COG1204 294 SPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKG 373 (766)
T ss_pred cccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCC
Confidence 8899999999999999999999999999999999766666 455
Q ss_pred --CCCCHHHHHHHhccCCCCCCc--eeEEEEe
Q psy7952 367 --MPSSIPAYYQESGRAGRDGLQ--SYCRIYH 394 (444)
Q Consensus 367 --~p~s~~~~~Qr~GR~~R~g~~--g~~~~~~ 394 (444)
.+.+.-+++||.|||||.|-. |.++++.
T Consensus 374 g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 374 GIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred CeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 455789999999999998754 5666666
No 59
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.5e-34 Score=314.36 Aligned_cols=337 Identities=17% Similarity=0.196 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
..++.+.+++.+|++ |+++|.++++.+++| +++++.||||+|||+. +++++ +.......+++|++
T Consensus 65 ~~~~~~~f~~~~G~~--pt~iQ~~~i~~il~G-~d~li~APTGsGKTl~--------~~~~a----l~~~~~g~~aLVl~ 129 (1638)
T PRK14701 65 VEEFEEFFEKITGFE--FWSIQKTWAKRILRG-KSFSIVAPTGMGKSTF--------GAFIA----LFLALKGKKCYIIL 129 (1638)
T ss_pred HHHHHHHHHHhhCCC--CCHHHHHHHHHHHcC-CCEEEEEcCCCCHHHH--------HHHHH----HHHHhcCCeEEEEE
Confidence 566778888888995 678999999999999 9999999999999986 34433 21111224679999
Q ss_pred chhhhhcccCccchHhhhcCC-CCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhC
Q psy7952 113 PILSSFYLRFRDDKTSIVTGR-SDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYN 191 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~ 191 (444)
||++|+ .|+.+++..+... ...+.+..++|+.+..++......+. .+.++|+|+||+.+.. .+ .... ..
T Consensus 130 PTreLa--~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~--~g~~dILV~TPgrL~~----~~-~~l~-~~ 199 (1638)
T PRK14701 130 PTTLLV--KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIE--NGDFDILVTTAQFLAR----NF-PEMK-HL 199 (1638)
T ss_pred CHHHHH--HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECCchhHH----hH-HHHh-hC
Confidence 999999 3334444444111 12378888999998877666555543 3568999999998742 11 1222 26
Q ss_pred CccEEEEeccccccccCC---------CcHHHHHH----H-------------------HHHHHhhCCCCc-EEEEeccC
Q psy7952 192 KLAYIVVDEAHCVSEWGH---------DFRPTYRR----L-------------------GELRQFTGNSIP-IIALTATA 238 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~---------~~~~~~~~----l-------------------~~~~~~~~~~~~-~v~lSAT~ 238 (444)
+++++|+||||++++|++ +|++.+.. + ......+++..+ ++.+|||+
T Consensus 200 ~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~ 279 (1638)
T PRK14701 200 KFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATG 279 (1638)
T ss_pred CCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCC
Confidence 799999999999988654 46666543 1 111112344455 57799999
Q ss_pred CcchHHHHHHHhcCCCCeEEEecCCCCC---CceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccch---
Q psy7952 239 EPSVKQDIISVLKFNKPYKVFKTSTFRS---NLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREH--- 312 (444)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~--- 312 (444)
++.. .....+ ..+..+... ..++ ++...+..... .....+.+++.. . +.++||||++++.
T Consensus 280 ~~r~--~~~~l~--~~~l~f~v~-~~~~~lr~i~~~yi~~~~--~~k~~L~~ll~~----~---g~~gIVF~~t~~~~e~ 345 (1638)
T PRK14701 280 KAKG--DRVKLY--RELLGFEVG-SGRSALRNIVDVYLNPEK--IIKEHVRELLKK----L---GKGGLIFVPIDEGAEK 345 (1638)
T ss_pred Cchh--HHHHHh--hcCeEEEec-CCCCCCCCcEEEEEECCH--HHHHHHHHHHHh----C---CCCeEEEEeccccchH
Confidence 8632 222333 233333222 2232 33333222221 111233333332 2 4678999999875
Q ss_pred HHHHHHHHHhh-----cCHHHHHHHHHHHhcCCccEEEEc----CccccccccCC-ccEEEEeCCCC---CHHHHHHHh-
Q psy7952 313 TTDLADALRRK-----VNKHERSRVQESFMRGEINVITAT----ISFGMGIDRQN-VRFVVHWGMPS---SIPAYYQES- 378 (444)
Q Consensus 313 ~~~l~~~L~~~-----~~~~~r~~~~~~f~~g~~~vLvaT----~~~~~Gidi~~-~~~Vi~~~~p~---s~~~~~Qr~- 378 (444)
|++++..|... .--..|...+++|++|+.+||||| +++++|||+|+ +++|||+|+|+ |++.|.|-.
T Consensus 346 ae~la~~L~~~Gi~a~~~h~~R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~ 425 (1638)
T PRK14701 346 AEEIEKYLLEDGFKIELVSAKNKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIY 425 (1638)
T ss_pred HHHHHHHHHHCCCeEEEecchHHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchh
Confidence 58999999886 222359999999999999999999 58999999998 99999999999 888776655
Q ss_pred ------------ccCCCCCCceeEEEEecccchhhHHHHHhh
Q psy7952 379 ------------GRAGRDGLQSYCRIYHSEHSKKSLEYVIKT 408 (444)
Q Consensus 379 ------------GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 408 (444)
||+||.|..+.++..+...+...++.++..
T Consensus 426 ~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 426 RILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred hhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhcc
Confidence 999999998888766667777777777654
No 60
>KOG0337|consensus
Probab=100.00 E-value=6e-36 Score=271.32 Aligned_cols=336 Identities=18% Similarity=0.194 Sum_probs=250.1
Q ss_pred CCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC-ccceeE
Q psy7952 31 VSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN-VRSRNG 109 (444)
Q Consensus 31 ~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~-~~~~vl 109 (444)
++..- .+++.+- ||.. |||+|++.++-++++ +++.-.+-||+|||.+ |.+|+ +..+.... ..-|.+
T Consensus 28 L~~~v-~raI~kk-g~~~-ptpiqRKTipliLe~-~dvv~martgsgktaa--------f~ipm-~e~Lk~~s~~g~Ral 94 (529)
T KOG0337|consen 28 LDYKV-LRAIHKK-GFNT-PTPIQRKTIPLILEG-RDVVGMARTGSGKTAA--------FLIPM-IEKLKSHSQTGLRAL 94 (529)
T ss_pred CCHHH-HHHHHHh-hcCC-CCchhcccccceeec-cccceeeecCCcchhh--------HHHHH-HHHHhhcccccccee
Confidence 44443 4444442 8887 999999999999999 9999999999999999 99999 55555444 334779
Q ss_pred EEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh
Q psy7952 110 WISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR 189 (444)
Q Consensus 110 il~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~ 189 (444)
+++||++|++ |..+.++.+..+ ..+.+..+.|+....++-..+ ..++||+++||+++. +....-...
T Consensus 95 ilsptreLa~--qtlkvvkdlgrg-t~lr~s~~~ggD~~eeqf~~l------~~npDii~ATpgr~~----h~~vem~l~ 161 (529)
T KOG0337|consen 95 ILSPTRELAL--QTLKVVKDLGRG-TKLRQSLLVGGDSIEEQFILL------NENPDIIIATPGRLL----HLGVEMTLT 161 (529)
T ss_pred eccCcHHHHH--HHHHHHHHhccc-cchhhhhhcccchHHHHHHHh------ccCCCEEEecCceee----eeehheecc
Confidence 9999999992 224444555222 226777777776665443333 468999999999986 333333456
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecC--CCCCC
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTS--TFRSN 267 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~ 267 (444)
+..+.|||+||++.+.+.| |.+.+ .+++...+.+.|.++||||++....+.... |+.+|+.+.... ...+.
T Consensus 162 l~sveyVVfdEadrlfemg--fqeql---~e~l~rl~~~~QTllfSatlp~~lv~faka--Gl~~p~lVRldvetkise~ 234 (529)
T KOG0337|consen 162 LSSVEYVVFDEADRLFEMG--FQEQL---HEILSRLPESRQTLLFSATLPRDLVDFAKA--GLVPPVLVRLDVETKISEL 234 (529)
T ss_pred ccceeeeeehhhhHHHhhh--hHHHH---HHHHHhCCCcceEEEEeccCchhhHHHHHc--cCCCCceEEeehhhhcchh
Confidence 7789999999999999887 66444 455567777889999999999988775554 455665555332 22222
Q ss_pred ceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHh
Q psy7952 268 LFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFM 337 (444)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~ 337 (444)
......... ...+...+.. ++.... ...+++|||.+..+++.+...|+.. +++..|...+.+|+
T Consensus 235 lk~~f~~~~-~a~K~aaLl~----il~~~~-~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~ 308 (529)
T KOG0337|consen 235 LKVRFFRVR-KAEKEAALLS----ILGGRI-KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFR 308 (529)
T ss_pred hhhheeeec-cHHHHHHHHH----HHhccc-cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccccc
Confidence 222222111 1222222222 222221 3568999999999999999999877 88999999999999
Q ss_pred cCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHH
Q psy7952 338 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405 (444)
Q Consensus 338 ~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 405 (444)
.++..+||.|+.+.+|+|+|-.+.||+||+|.+...|+||+||+.|.|..|+++.++.+.+...+..+
T Consensus 309 ~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 309 GRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred CCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999988777665554
No 61
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2e-34 Score=298.52 Aligned_cols=338 Identities=21% Similarity=0.267 Sum_probs=250.7
Q ss_pred CCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEE
Q psy7952 31 VSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGW 110 (444)
Q Consensus 31 ~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vli 110 (444)
.....+..++... |...+. .+|.+|+..+..| ++++|++|||||||.+ |++|+ ++.+...... ++|+
T Consensus 54 ~~~~~l~~~l~~~-g~~~lY-~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~--------FllPI-ld~~l~~~~a-~AL~ 120 (851)
T COG1205 54 LRDESLKSALVKA-GIERLY-SHQVDALRLIREG-RNVVVTTGTGSGKTES--------FLLPI-LDHLLRDPSA-RALL 120 (851)
T ss_pred hhhhHHHHHHHHh-cccccc-HHHHHHHHHHHCC-CCEEEECCCCCchhHH--------HHHHH-HHHHhhCcCc-cEEE
Confidence 4455556666664 777745 7999999999999 9999999999999999 99999 5555554444 8899
Q ss_pred EcchhhhhcccCccchHhhh----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 111 ISPILSSFYLRFRDDKTSIV----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 111 l~P~~~L~~~~q~~~~~~~l----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
+.||++|+ ++|.+++ ...+..+....++|+....++..++ .+.++|+++||+|+.......-...
T Consensus 121 lYPtnALa-----~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~------~~pp~IllTNpdMLh~~llr~~~~~ 189 (851)
T COG1205 121 LYPTNALA-----NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAII------RNPPDILLTNPDMLHYLLLRNHDAW 189 (851)
T ss_pred EechhhhH-----hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHH------hCCCCEEEeCHHHHHHHhccCcchH
Confidence 99999999 8999988 1112258999999999988877666 4789999999999842111111111
Q ss_pred HHhhCCccEEEEeccccccc-cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCC
Q psy7952 187 LVRYNKLAYIVVDEAHCVSE-WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFR 265 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (444)
...+.++++||+||+|.|-. .|+++...+.++.++++..+.+.++|++|||+.... +...++++..-... +..+...
T Consensus 190 ~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~-v~~~g~~ 267 (851)
T COG1205 190 LWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVP-VDEDGSP 267 (851)
T ss_pred HHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceee-ccCCCCC
Confidence 23355799999999999954 677888889999999888888899999999997754 34455544322211 2233222
Q ss_pred CCceEEEEEccc--------chhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh--------------
Q psy7952 266 SNLFYDVIFDDL--------LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-------------- 323 (444)
Q Consensus 266 ~~~~~~~~~~~~--------~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-------------- 323 (444)
....+.+..... ..+.......++..++. .+-++|+|+.++..++.++...++.
T Consensus 268 ~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~----~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~ 343 (851)
T COG1205 268 RGLRYFVRREPPIRELAESIRRSALAELATLAALLVR----NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVST 343 (851)
T ss_pred CCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHH----cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheee
Confidence 233333332220 01122222222222222 5789999999999999986333222
Q ss_pred ----cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCC-CHHHHHHHhccCCCCCCceeEEEEecccc
Q psy7952 324 ----VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGLQSYCRIYHSEHS 398 (444)
Q Consensus 324 ----~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 398 (444)
+..++|..++..|+.|++.++++|++++.|+|+.+++.||..+.|. +..++.||.||+||.++.+..+.+...+.
T Consensus 344 ~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~ 423 (851)
T COG1205 344 YRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDP 423 (851)
T ss_pred ccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCc
Confidence 8899999999999999999999999999999999999999999999 99999999999999998888777776443
No 62
>KOG0354|consensus
Probab=100.00 E-value=2.9e-34 Score=282.69 Aligned_cols=311 Identities=19% Similarity=0.272 Sum_probs=207.8
Q ss_pred ccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchH
Q psy7952 48 SFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKT 127 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~ 127 (444)
.+| .||.+.+..++ | ++++|++|||+|||++|+..|.+ .++.....+|+|++|++.|+ .||.
T Consensus 62 ~lR-~YQ~eivq~AL-g-kNtii~lPTG~GKTfIAa~Vm~n----------h~rw~p~~KiVF~aP~~pLv-----~QQ~ 123 (746)
T KOG0354|consen 62 ELR-NYQEELVQPAL-G-KNTIIALPTGSGKTFIAAVIMKN----------HFEWRPKGKVVFLAPTRPLV-----NQQI 123 (746)
T ss_pred ccc-HHHHHHhHHhh-c-CCeEEEeecCCCccchHHHHHHH----------HHhcCCcceEEEeeCCchHH-----HHHH
Confidence 456 69999999999 8 99999999999999997665444 23333346889999999999 7777
Q ss_pred hhh-cCCCCceeEEEEeCCCC-hhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh-hCCccEEEEeccccc
Q psy7952 128 SIV-TGRSDLYQLELIVSGQT-KTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR-YNKLAYIVVDEAHCV 204 (444)
Q Consensus 128 ~~l-~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~-~~~~~~iViDE~H~~ 204 (444)
..+ ..+.+ ..+....++.. ...+.. +....+|+|+||+.+.+.. ...... ++.|.++||||||+-
T Consensus 124 a~~~~~~~~-~~~T~~l~~~~~~~~r~~-------i~~s~~vff~TpQil~ndL----~~~~~~~ls~fs~iv~DE~Hra 191 (746)
T KOG0354|consen 124 ACFSIYLIP-YSVTGQLGDTVPRSNRGE-------IVASKRVFFRTPQILENDL----KSGLHDELSDFSLIVFDECHRT 191 (746)
T ss_pred HHHhhccCc-ccceeeccCccCCCchhh-------hhcccceEEeChHhhhhhc----ccccccccceEEEEEEcccccc
Confidence 666 33322 44555555533 333222 2357899999999987433 333222 578999999999997
Q ss_pred cccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHh-cCCCCeEEEecC---------------------
Q psy7952 205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVL-KFNKPYKVFKTS--------------------- 262 (444)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l-~~~~~~~~~~~~--------------------- 262 (444)
... +.+...+..+..+. ....|+++|||||.....+ +.+.+ ++...+.+...+
T Consensus 192 ~kn-~~Y~~Vmr~~l~~k---~~~~qILgLTASpG~~~~~-v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~ 266 (746)
T KOG0354|consen 192 SKN-HPYNNIMREYLDLK---NQGNQILGLTASPGSKLEQ-VQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSL 266 (746)
T ss_pred ccc-ccHHHHHHHHHHhh---hccccEEEEecCCCccHHH-HHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHH
Confidence 542 23444443333322 2224899999999864433 22221 111000000000
Q ss_pred ----------------------------------C----------CCCCc----e------------------EEEE---
Q psy7952 263 ----------------------------------T----------FRSNL----F------------------YDVI--- 273 (444)
Q Consensus 263 ----------------------------------~----------~~~~~----~------------------~~~~--- 273 (444)
. ..++. . ....
T Consensus 267 ~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~ 346 (746)
T KOG0354|consen 267 CERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVD 346 (746)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHH
Confidence 0 00000 0 0000
Q ss_pred ------------------------------------------EcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccc
Q psy7952 274 ------------------------------------------FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTRE 311 (444)
Q Consensus 274 ------------------------------------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~ 311 (444)
.......+.+.+.+.+.+... ..+..++||||.+++
T Consensus 347 ~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~--~~~dsR~IIFve~R~ 424 (746)
T KOG0354|consen 347 ALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE--QNPDSRTIIFVETRE 424 (746)
T ss_pred HHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh--cCCCccEEEEEehHH
Confidence 000001111223333333333 236779999999999
Q ss_pred hHHHHHHHHHhh---------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCC
Q psy7952 312 HTTDLADALRRK---------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSS 370 (444)
Q Consensus 312 ~~~~l~~~L~~~---------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s 370 (444)
.|..+...|.+. |++.+..++++.|++|++++||||+++++|+||+.|++||.||...|
T Consensus 425 sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~sn 504 (746)
T KOG0354|consen 425 SALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSN 504 (746)
T ss_pred HHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCcc
Confidence 999999999844 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCceeEEEEeccc
Q psy7952 371 IPAYYQESGRAGRDGLQSYCRIYHSEH 397 (444)
Q Consensus 371 ~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 397 (444)
+..++||.|| ||. +.|.+++++...
T Consensus 505 pIrmIQrrGR-gRa-~ns~~vll~t~~ 529 (746)
T KOG0354|consen 505 PIRMVQRRGR-GRA-RNSKCVLLTTGS 529 (746)
T ss_pred HHHHHHHhcc-ccc-cCCeEEEEEcch
Confidence 9999999999 898 677788877733
No 63
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.8e-33 Score=281.49 Aligned_cols=320 Identities=13% Similarity=0.079 Sum_probs=203.7
Q ss_pred CCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccc-eEEeCCCccccc---cCCccceeEEEcchhhhhcc
Q psy7952 45 GFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARS-RVRIPPGADFIL---NGNVRSRNGWISPILSSFYL 120 (444)
Q Consensus 45 g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~-~~~~~~~~~~l~---~~~~~~~vlil~P~~~L~~~ 120 (444)
.+.++...+|+++++.++.+ ++++++|+||+|||.+.-.+++- .|++|. +..+. ..+...++++++|+++|+
T Consensus 160 ~l~~~~~~iQ~qil~~i~~g-kdvIv~A~TGSGKTtqvPq~l~~~~flf~~-l~~l~~~~~~~~~~~ilvt~PrreLa-- 235 (675)
T PHA02653 160 PLASLQPDVQLKIFEAWISR-KPVVLTGGTGVGKTSQVPKLLLWFNYLFGG-FDNLDKIDPNFIERPIVLSLPRVALV-- 235 (675)
T ss_pred cCCchhHHHHHHHHHHHHhC-CCEEEECCCCCCchhHHHHHHHHhhhccch-hhhhhhcccccCCcEEEEECcHHHHH--
Confidence 34444557999999999999 99999999999999752111111 033333 22121 122345789999999999
Q ss_pred cCccchHhhh-c-CCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEE
Q psy7952 121 RFRDDKTSIV-T-GRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVV 198 (444)
Q Consensus 121 ~q~~~~~~~l-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iVi 198 (444)
.|+.+.+... . .......+....|+...... .......+++++|+.... ..+.++++||+
T Consensus 236 ~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~-------~t~~k~~~Ilv~T~~L~l-----------~~L~~v~~VVI 297 (675)
T PHA02653 236 RLHSITLLKSLGFDEIDGSPISLKYGSIPDELI-------NTNPKPYGLVFSTHKLTL-----------NKLFDYGTVII 297 (675)
T ss_pred HHHHHHHHHHhCccccCCceEEEEECCcchHHh-------hcccCCCCEEEEeCcccc-----------cccccCCEEEc
Confidence 2233333332 1 12223667777887762100 001235689999976421 13568999999
Q ss_pred eccccccccCCCcHHHHHHHHHHHHhh-CCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEccc
Q psy7952 199 DEAHCVSEWGHDFRPTYRRLGELRQFT-GNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDL 277 (444)
Q Consensus 199 DE~H~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (444)
||||.....+. .+..+++.. +...|+++||||++.... .+.++++ ++..+........++...+.....
T Consensus 298 DEaHEr~~~~D-------llL~llk~~~~~~rq~ILmSATl~~dv~-~l~~~~~--~p~~I~I~grt~~pV~~~yi~~~~ 367 (675)
T PHA02653 298 DEVHEHDQIGD-------IIIAVARKHIDKIRSLFLMTATLEDDRD-RIKEFFP--NPAFVHIPGGTLFPISEVYVKNKY 367 (675)
T ss_pred cccccCccchh-------HHHHHHHHhhhhcCEEEEEccCCcHhHH-HHHHHhc--CCcEEEeCCCcCCCeEEEEeecCc
Confidence 99999876542 122222222 222589999999987654 4555553 454444443322333322221110
Q ss_pred c----hhh-HHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------------cCHHHHHHHHHHH-hcC
Q psy7952 278 L----KDS-YAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------------VNKHERSRVQESF-MRG 339 (444)
Q Consensus 278 ~----~~~-~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------------~~~~~r~~~~~~f-~~g 339 (444)
. ... .......+..+.......++++||||+++++++.+++.|.+. +++ +++.+++| ++|
T Consensus 368 ~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~g 445 (675)
T PHA02653 368 NPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSK 445 (675)
T ss_pred ccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccC
Confidence 0 000 011111122221111123568999999999999999999753 333 35666777 689
Q ss_pred CccEEEEcCccccccccCCccEEEEeC---CCC---------CHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 340 EINVITATISFGMGIDRQNVRFVVHWG---MPS---------SIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 340 ~~~vLvaT~~~~~Gidi~~~~~Vi~~~---~p~---------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
+.+|||||+++++|+|+|++++||++| .|. |..+|.||+||+||. ++|.|+.++++++.
T Consensus 446 k~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 446 NPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999999999999999999999998 554 889999999999999 88999999998764
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.8e-33 Score=279.39 Aligned_cols=298 Identities=18% Similarity=0.154 Sum_probs=189.2
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhh
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
|+++|.+++..++.+ ++.++++|||+|||.++.. . .......+ ..++||++||++|+ .|..+.
T Consensus 115 ~r~~Q~~av~~~l~~-~~~il~apTGsGKT~i~~~--------l--~~~~~~~~-~~~vLilvpt~eL~-----~Q~~~~ 177 (501)
T PHA02558 115 PHWYQYDAVYEGLKN-NRRLLNLPTSAGKSLIQYL--------L--SRYYLENY-EGKVLIIVPTTSLV-----TQMIDD 177 (501)
T ss_pred CCHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHH--------H--HHHHHhcC-CCeEEEEECcHHHH-----HHHHHH
Confidence 558999999999988 8899999999999987321 0 11111222 22679999999999 444444
Q ss_pred h-cCC-CCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccccc
Q psy7952 130 V-TGR-SDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEW 207 (444)
Q Consensus 130 l-~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~ 207 (444)
+ .+. .+...+..+.++.... ...+|+|+||+++... ....+.++++||+||||++.+.
T Consensus 178 l~~~~~~~~~~~~~i~~g~~~~-------------~~~~I~VaT~qsl~~~-------~~~~~~~~~~iIvDEaH~~~~~ 237 (501)
T PHA02558 178 FVDYRLFPREAMHKIYSGTAKD-------------TDAPIVVSTWQSAVKQ-------PKEWFDQFGMVIVDECHLFTGK 237 (501)
T ss_pred HHHhccccccceeEEecCcccC-------------CCCCEEEeeHHHHhhc-------hhhhccccCEEEEEchhcccch
Confidence 4 221 1112333444443221 3578999999997521 1123568999999999998642
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHH--HHHHhcCCCCeEEEec-C----CCCCCceEEEEEcccc--
Q psy7952 208 GHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQD--IISVLKFNKPYKVFKT-S----TFRSNLFYDVIFDDLL-- 278 (444)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~--~~~~l~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~-- 278 (444)
. + ..++..+++..++++|||||....... +...++ +....... . .......+........
T Consensus 238 ~--~-------~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG--~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~ 306 (501)
T PHA02558 238 S--L-------TSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFG--DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDE 306 (501)
T ss_pred h--H-------HHHHHhhhccceEEEEeccCCCccccHHHHHHhhC--CceEEecHHHHHhCCCcCCceEEEEeccCCHH
Confidence 2 2 233334444477999999997643221 111222 11110000 0 0000011110000000
Q ss_pred ----------hh------hHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHH
Q psy7952 279 ----------KD------SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRV 332 (444)
Q Consensus 279 ----------~~------~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~ 332 (444)
.. ..+.....+..........+.+++|||++.++++.+++.|.+. ++.++|..+
T Consensus 307 ~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i 386 (501)
T PHA02558 307 DRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEM 386 (501)
T ss_pred HhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 00 0001112222222211224678899999999999999999876 888999999
Q ss_pred HHHHhcCCccEEEEc-CccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEec
Q psy7952 333 QESFMRGEINVITAT-ISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHS 395 (444)
Q Consensus 333 ~~~f~~g~~~vLvaT-~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 395 (444)
++.|+.|...+|||| +++++|+|+|++++||++.++.|...|+||+||++|.+.++....+++
T Consensus 387 ~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 387 KKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred HHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 999999999999998 899999999999999999999999999999999999876654444443
No 65
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=7.2e-33 Score=269.07 Aligned_cols=356 Identities=22% Similarity=0.280 Sum_probs=268.5
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHcc-----CCcEEEEccCCCcccccccccccceEEeCCCccccccCCcccee
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILLR-----THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRN 108 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~-----~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~v 108 (444)
.++.+.+.+..+|+ .|..|++++..|... ..+-++.+.-|||||.+|+++++. + +..+...
T Consensus 249 ~~l~~~~~~~LPF~--LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~-----a----i~~G~Q~--- 314 (677)
T COG1200 249 GELLAKFLAALPFK--LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLA-----A----IEAGYQA--- 314 (677)
T ss_pred HHHHHHHHHhCCCC--ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHH-----H----HHcCCee---
Confidence 34555565557988 488999999999863 245799999999999997765443 1 3334444
Q ss_pred EEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 109 GWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 109 lil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
.+++||.-|| .|++..+ .+..-++.+..++|......+.+.+..+. .+..+|+||| |.+++.
T Consensus 315 ALMAPTEILA-----~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~--~G~~~ivVGT---------HALiQd 378 (677)
T COG1200 315 ALMAPTEILA-----EQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLA--SGEIDIVVGT---------HALIQD 378 (677)
T ss_pred EEeccHHHHH-----HHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHh--CCCCCEEEEc---------chhhhc
Confidence 9999999999 7777776 22222399999999999999999988886 5789999999 777888
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhc-CCCCeEEEecCCCC
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK-FNKPYKVFKTSTFR 265 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ 265 (444)
...+.+++++|+||=|++ |..-| ..+...-..++.++.|||||.|...- ...++ +.-. .+-.-+..|
T Consensus 379 ~V~F~~LgLVIiDEQHRF---GV~QR------~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS-~IdElP~GR 446 (677)
T COG1200 379 KVEFHNLGLVIIDEQHRF---GVHQR------LALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVS-IIDELPPGR 446 (677)
T ss_pred ceeecceeEEEEeccccc---cHHHH------HHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccch-hhccCCCCC
Confidence 899999999999999994 42111 12222222157899999999987654 33333 2222 222223445
Q ss_pred CCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchH--------HHHHHHHHhh------------cC
Q psy7952 266 SNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHT--------TDLADALRRK------------VN 325 (444)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~--------~~l~~~L~~~------------~~ 325 (444)
.++.-.+...+. ...+.+.+.+.+. .++++.|.|+-.++. ..++..|... |+
T Consensus 447 kpI~T~~i~~~~----~~~v~e~i~~ei~----~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~ 518 (677)
T COG1200 447 KPITTVVIPHER----RPEVYERIREEIA----KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMK 518 (677)
T ss_pred CceEEEEecccc----HHHHHHHHHHHHH----cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCC
Confidence 555555555433 3334444444333 489999999877655 4556666633 99
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCC-CCCHHHHHHHhccCCCCCCceeEEEEecccc----hh
Q psy7952 326 KHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGM-PSSIPAYYQESGRAGRDGLQSYCRIYHSEHS----KK 400 (444)
Q Consensus 326 ~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~-p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~----~~ 400 (444)
..++++++++|++|+++|||||.+.++|||+|+.+++|..+. -.....+.|-.||+||.+..++|++++.+.. ..
T Consensus 519 ~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~ 598 (677)
T COG1200 519 PAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQ 598 (677)
T ss_pred hHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHH
Confidence 999999999999999999999999999999999999776664 3468889999999999999999999998665 57
Q ss_pred hHHHHHhhccchhHHHHHHHHhhHHHHHHHhhhceeeee
Q psy7952 401 SLEYVIKTDTSTKREQLELKFKNYLSMLEYCEQGYFLVI 439 (444)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (444)
+++.+.++.......+.+.++++..++..-.++|+..+.
T Consensus 599 RL~im~~t~DGF~IAE~DLklRGpGe~lG~rQSG~~~f~ 637 (677)
T COG1200 599 RLKIMRETTDGFVIAEEDLKLRGPGELLGTRQSGLPEFR 637 (677)
T ss_pred HHHHHHhcCCcceehhhhHhccCCccccCCcccCCcceE
Confidence 899999999999999999999999999988888765443
No 66
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-32 Score=284.49 Aligned_cols=303 Identities=16% Similarity=0.140 Sum_probs=201.9
Q ss_pred HHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh--
Q psy7952 53 LQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-- 130 (444)
Q Consensus 53 ~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-- 130 (444)
+-.+.+..+..+ ++++++|+||||||.. +..+. ++.. ....+++++.|+++++ .+..+++
T Consensus 6 ~~~~i~~~l~~~-~~vIi~a~TGSGKTT~--------vpl~l-L~~~---~~~~~ilvlqPrR~aA-----~qiA~rva~ 67 (819)
T TIGR01970 6 VLPALRDALAAH-PQVVLEAPPGAGKSTA--------VPLAL-LDAP---GIGGKIIMLEPRRLAA-----RSAAQRLAS 67 (819)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHH--------HHHHH-HHhh---ccCCeEEEEeCcHHHH-----HHHHHHHHH
Confidence 334556666566 8999999999999998 55555 2222 2234789999999999 4444444
Q ss_pred cCC-CCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccc-ccccC
Q psy7952 131 TGR-SDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHC-VSEWG 208 (444)
Q Consensus 131 ~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~-~~~~~ 208 (444)
.++ ..+..+......... ...+.+|+|+||+.|. . .+.....+.++++|||||+|. ..+..
T Consensus 68 ~~~~~~g~~VGy~vr~~~~------------~s~~t~I~v~T~G~Ll----r-~l~~d~~L~~v~~VIiDEaHER~L~~D 130 (819)
T TIGR01970 68 QLGEAVGQTVGYRVRGENK------------VSRRTRLEVVTEGILT----R-MIQDDPELDGVGALIFDEFHERSLDAD 130 (819)
T ss_pred HhCCCcCcEEEEEEccccc------------cCCCCcEEEECCcHHH----H-HHhhCcccccCCEEEEeccchhhhccc
Confidence 122 001334333332211 1346789999999985 2 233345678999999999995 44322
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHH
Q psy7952 209 HDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEF 288 (444)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (444)
+. +..+..+.+.++++.++|+||||++... +.++++ ++..+....... ++...+............+...
T Consensus 131 --l~--L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~--~~~vI~~~gr~~-pVe~~y~~~~~~~~~~~~v~~~ 200 (819)
T TIGR01970 131 --LG--LALALDVQSSLREDLKILAMSATLDGER---LSSLLP--DAPVVESEGRSF-PVEIRYLPLRGDQRLEDAVSRA 200 (819)
T ss_pred --hH--HHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcC--CCcEEEecCcce-eeeeEEeecchhhhHHHHHHHH
Confidence 21 1222334444566789999999998653 344443 222233222111 1222222111111111122233
Q ss_pred HHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-------------cCHHHHHHHHHHHhcCCccEEEEcCccccccc
Q psy7952 289 IEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-------------VNKHERSRVQESFMRGEINVITATISFGMGID 355 (444)
Q Consensus 289 l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 355 (444)
+..++.. ..+++|||+++.++++.++..|.+. +++++|..+++.|++|..+|||||+++++|||
T Consensus 201 l~~~l~~---~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgIt 277 (819)
T TIGR01970 201 VEHALAS---ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLT 277 (819)
T ss_pred HHHHHHh---cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhccc
Confidence 4444332 3678999999999999999999862 88899999999999999999999999999999
Q ss_pred cCCccEEEEeCCCC------------------CHHHHHHHhccCCCCCCceeEEEEecccchhhHHH
Q psy7952 356 RQNVRFVVHWGMPS------------------SIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEY 404 (444)
Q Consensus 356 i~~~~~Vi~~~~p~------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 404 (444)
||+|++||++|.|. |..++.||.||+||. .+|.|+.+++..+...+..
T Consensus 278 Ip~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l~~ 343 (819)
T TIGR01970 278 IEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRLPA 343 (819)
T ss_pred ccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhhhc
Confidence 99999999999875 345699999999999 8999999999877655433
No 67
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=6.6e-33 Score=286.91 Aligned_cols=300 Identities=14% Similarity=0.135 Sum_probs=201.8
Q ss_pred HHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhhcCC-
Q psy7952 55 KKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGR- 133 (444)
Q Consensus 55 ~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l~~~- 133 (444)
.+.+..+.++ +++++.||||||||.+ |.++. +.......+++++.|+++++ .|+.+.+... ++
T Consensus 11 ~~i~~~l~~~-~~vvv~A~TGSGKTt~--------~pl~l----L~~~~~~~~ilvlqPrR~aA--~qia~rva~~-l~~ 74 (812)
T PRK11664 11 PELLTALKTA-PQVLLKAPTGAGKSTW--------LPLQL----LQHGGINGKIIMLEPRRLAA--RNVAQRLAEQ-LGE 74 (812)
T ss_pred HHHHHHHHhC-CCEEEEcCCCCCHHHH--------HHHHH----HHcCCcCCeEEEECChHHHH--HHHHHHHHHH-hCc
Confidence 3455666566 8999999999999999 65555 32222234789999999999 3333333222 11
Q ss_pred CCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccc-cccCCCcH
Q psy7952 134 SDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV-SEWGHDFR 212 (444)
Q Consensus 134 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~-~~~~~~~~ 212 (444)
..+..+....++.... ....+|+|+||+.+. + .+.....+.++++||+||+|.. .+.. +
T Consensus 75 ~~g~~VGy~vr~~~~~------------~~~t~I~v~T~G~Ll----r-~l~~d~~L~~v~~IIlDEaHER~l~~D--l- 134 (812)
T PRK11664 75 KPGETVGYRMRAESKV------------GPNTRLEVVTEGILT----R-MIQRDPELSGVGLVILDEFHERSLQAD--L- 134 (812)
T ss_pred ccCceEEEEecCcccc------------CCCCcEEEEChhHHH----H-HHhhCCCcCcCcEEEEcCCCccccccc--h-
Confidence 1114555544443321 235689999999984 2 2333456789999999999973 2211 1
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHH
Q psy7952 213 PTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKC 292 (444)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 292 (444)
.+..+..+++.++++.++++||||++.. .+.+++ +++..+....... .+...+............+...+..+
T Consensus 135 -~L~ll~~i~~~lr~~lqlilmSATl~~~---~l~~~~--~~~~~I~~~gr~~-pV~~~y~~~~~~~~~~~~v~~~l~~~ 207 (812)
T PRK11664 135 -ALALLLDVQQGLRDDLKLLIMSATLDND---RLQQLL--PDAPVIVSEGRSF-PVERRYQPLPAHQRFDEAVARATAEL 207 (812)
T ss_pred -HHHHHHHHHHhCCccceEEEEecCCCHH---HHHHhc--CCCCEEEecCccc-cceEEeccCchhhhHHHHHHHHHHHH
Confidence 1222334445556678999999999764 234444 2332333322211 22222222111111112222334444
Q ss_pred hccCCCCCceEEEEecccchHHHHHHHHHhh-------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCc
Q psy7952 293 LGKDNKANNCGIIYCRTREHTTDLADALRRK-------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNV 359 (444)
Q Consensus 293 l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~ 359 (444)
+.. ..+.+|||+++.++++.+++.|... ++..+|..+++.|++|..+|||||+++++|||||++
T Consensus 208 l~~---~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V 284 (812)
T PRK11664 208 LRQ---ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGI 284 (812)
T ss_pred HHh---CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCc
Confidence 432 3688999999999999999999862 888999999999999999999999999999999999
Q ss_pred cEEEEeCCCC------------------CHHHHHHHhccCCCCCCceeEEEEecccchhh
Q psy7952 360 RFVVHWGMPS------------------SIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 401 (444)
Q Consensus 360 ~~Vi~~~~p~------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 401 (444)
++||++|.+. |..+|.||.||+||. .+|.|+.++++.+...
T Consensus 285 ~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 285 RLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred eEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 9999988764 446899999999999 6999999999876644
No 68
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.2e-32 Score=291.60 Aligned_cols=306 Identities=19% Similarity=0.247 Sum_probs=198.6
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcc
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISP 113 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P 113 (444)
.++.+.+++.+|+. |+++|..+++.++.| ++++++||||+|||.. .+++ +..+. ....+++|++|
T Consensus 67 ~~~~~~f~~~~G~~--pt~iQ~~~i~~il~g-~dv~i~ApTGsGKT~f---------~l~~-~~~l~--~~g~~alIL~P 131 (1176)
T PRK09401 67 KEFEKFFKKKTGSK--PWSLQRTWAKRLLLG-ESFAIIAPTGVGKTTF---------GLVM-SLYLA--KKGKKSYIIFP 131 (1176)
T ss_pred HHHHHHHHHhcCCC--CcHHHHHHHHHHHCC-CcEEEEcCCCCCHHHH---------HHHH-HHHHH--hcCCeEEEEec
Confidence 45566777777985 578999999999999 9999999999999954 2222 11111 12356799999
Q ss_pred hhhhhcccCccchHhhh--cCCCCceeEEEEeCCCC--hhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh
Q psy7952 114 ILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQT--KTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR 189 (444)
Q Consensus 114 ~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~ 189 (444)
|++|+ .|+.+.++.+ ..+ +.+..+.++.. .....+....+. .+.++|+|+||+.+.. ... ...
T Consensus 132 TreLa--~Qi~~~l~~l~~~~~---~~~~~~~g~~~~~~~ek~~~~~~l~--~~~~~IlV~Tp~rL~~-----~~~-~l~ 198 (1176)
T PRK09401 132 TRLLV--EQVVEKLEKFGEKVG---CGVKILYYHSSLKKKEKEEFLERLK--EGDFDILVTTSQFLSK-----NFD-ELP 198 (1176)
T ss_pred cHHHH--HHHHHHHHHHhhhcC---ceEEEEEccCCcchhHHHHHHHHHh--cCCCCEEEECHHHHHH-----HHH-hcc
Confidence 99999 3334555555 223 55655655543 233333333332 3568999999999742 122 233
Q ss_pred hCCccEEEEeccccccccCCC---------cH-HHHHHH-----------------HHHHHhh----CCCCcEEEEeccC
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHD---------FR-PTYRRL-----------------GELRQFT----GNSIPIIALTATA 238 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~---------~~-~~~~~l-----------------~~~~~~~----~~~~~~v~lSAT~ 238 (444)
..+++++|+||||++++++.. |. ..+..+ ..+...+ ++..|++++|||+
T Consensus 199 ~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~ 278 (1176)
T PRK09401 199 KKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATG 278 (1176)
T ss_pred ccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCC
Confidence 456999999999999874422 32 112211 1111111 1257899999999
Q ss_pred CcchHHH--HHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccch---H
Q psy7952 239 EPSVKQD--IISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREH---T 313 (444)
Q Consensus 239 ~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~---~ 313 (444)
++..... +.+.++ +.+........++...+.... .+...+..++.. . +.++||||++... +
T Consensus 279 ~~~~~~~~l~~~ll~----~~v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~----l---~~~~LIFv~t~~~~~~a 344 (1176)
T PRK09401 279 RPRGNRVKLFRELLG----FEVGSPVFYLRNIVDSYIVDE---DSVEKLVELVKR----L---GDGGLIFVPSDKGKEYA 344 (1176)
T ss_pred CccchHHHHhhccce----EEecCcccccCCceEEEEEcc---cHHHHHHHHHHh----c---CCCEEEEEecccChHHH
Confidence 8743221 222221 122222222334444333322 233333343332 2 4579999999888 9
Q ss_pred HHHHHHHHhh-------cCHHHHHHHHHHHhcCCccEEEE----cCccccccccCC-ccEEEEeCCCC------CHHHHH
Q psy7952 314 TDLADALRRK-------VNKHERSRVQESFMRGEINVITA----TISFGMGIDRQN-VRFVVHWGMPS------SIPAYY 375 (444)
Q Consensus 314 ~~l~~~L~~~-------~~~~~r~~~~~~f~~g~~~vLva----T~~~~~Gidi~~-~~~Vi~~~~p~------s~~~~~ 375 (444)
+.+++.|... .... ...+++|++|+.+|||| |+++++|||+|+ +++|||+|.|. ....+.
T Consensus 345 e~l~~~L~~~gi~v~~~hg~l--~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~ 422 (1176)
T PRK09401 345 EELAEYLEDLGINAELAISGF--ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPP 422 (1176)
T ss_pred HHHHHHHHHCCCcEEEEeCcH--HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCH
Confidence 9999999887 1112 33459999999999999 699999999999 89999999998 678899
Q ss_pred HHhccCCC
Q psy7952 376 QESGRAGR 383 (444)
Q Consensus 376 Qr~GR~~R 383 (444)
+|+||+..
T Consensus 423 ~~~~r~~~ 430 (1176)
T PRK09401 423 FLLLRLLS 430 (1176)
T ss_pred HHHHHHHh
Confidence 99999963
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=5.8e-33 Score=268.10 Aligned_cols=299 Identities=15% Similarity=0.106 Sum_probs=177.5
Q ss_pred cEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-c-CCCCceeEEEEeC
Q psy7952 67 DIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-T-GRSDLYQLELIVS 144 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~-~~~~~i~~~~~~~ 144 (444)
++++.+|||+|||.+ +..++ +..+. .+...++++++|+++|+ .++.+.+ . ++ .++..+++
T Consensus 1 ~vvi~apTGsGKT~~--------~~~~~-l~~~~-~~~~~~ii~v~P~~~L~-----~q~~~~l~~~f~---~~~~~~~~ 62 (358)
T TIGR01587 1 LLVIEAPTGYGKTEA--------ALLWA-LHSIK-SQKADRVIIALPTRATI-----NAMYRRAKELFG---SNLGLLHS 62 (358)
T ss_pred CEEEEeCCCCCHHHH--------HHHHH-HHHHh-hCCCCeEEEEeehHHHH-----HHHHHHHHHHhC---cccEEeec
Confidence 579999999999999 55554 22222 23345789999999999 6777776 2 24 34445555
Q ss_pred CCChhh---------HHHHHHHHHh---cCCCeeEEEECCCccccccHHHHHHHHHhh--CCccEEEEeccccccccCCC
Q psy7952 145 GQTKTE---------NKAILEELRL---VKPRIKLLYVTPERAVTESFHYLLQHLVRY--NKLAYIVVDEAHCVSEWGHD 210 (444)
Q Consensus 145 ~~~~~~---------~~~~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~--~~~~~iViDE~H~~~~~~~~ 210 (444)
...... .......... .....+|+|+||+++....+..+......+ -..++||+||+|.+.+.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~-- 140 (358)
T TIGR01587 63 SSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYT-- 140 (358)
T ss_pred cHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHH--
Confidence 432110 0011110000 012467999999998532222111111111 133899999999987653
Q ss_pred cHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCC-CCCceEEEE-EcccchhhHHHHHHH
Q psy7952 211 FRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF-RSNLFYDVI-FDDLLKDSYAHVKEF 288 (444)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ 288 (444)
... +..+...+. ..+.|+++||||++....+.+... ... .......... .....+.+. .......+...+..+
T Consensus 141 ~~~-l~~~l~~l~--~~~~~~i~~SATlp~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 215 (358)
T TIGR01587 141 LAL-ILAVLEVLK--DNDVPILLMSATLPKFLKEYAEKI-GYV-EFNEPLDLKEERRFERHRFIKIESDKVGEISSLERL 215 (358)
T ss_pred HHH-HHHHHHHHH--HcCCCEEEEecCchHHHHHHHhcC-CCc-ccccCCCCccccccccccceeeccccccCHHHHHHH
Confidence 222 233222222 235899999999985543332221 111 0000000000 000011111 111111222223333
Q ss_pred HHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------------cCHHHHHH----HHHHHhcCCccEEEEcCcccc
Q psy7952 289 IEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------------VNKHERSR----VQESFMRGEINVITATISFGM 352 (444)
Q Consensus 289 l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------------~~~~~r~~----~~~~f~~g~~~vLvaT~~~~~ 352 (444)
+... ..++++||||+++++++.++..|.+. +++.+|.. +++.|++|..++||||+++++
T Consensus 216 ~~~~-----~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~ 290 (358)
T TIGR01587 216 LEFI-----KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEA 290 (358)
T ss_pred HHHh-----hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhc
Confidence 3221 14689999999999999999999765 56777765 488999999999999999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCc----eeEEEEecccc
Q psy7952 353 GIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ----SYCRIYHSEHS 398 (444)
Q Consensus 353 Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~----g~~~~~~~~~~ 398 (444)
|+|++ +++||++..| ..+|+||+||+||.|+. |.++++....+
T Consensus 291 GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 291 SLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred eeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 99996 7888887665 88999999999998754 35666655443
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=9.4e-32 Score=257.04 Aligned_cols=292 Identities=17% Similarity=0.200 Sum_probs=183.6
Q ss_pred HHHHHHHHHHccCC-cEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-
Q psy7952 53 LQKKAIRHILLRTH-DIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV- 130 (444)
Q Consensus 53 ~Q~~~~~~~~~~~~-~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l- 130 (444)
+|.++++.+.+++. .+++.+|||+|||.+ +.+++ +...+. +++++|+++|+ .++.+++
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~--------~~~~~----l~~~~~---~~~~~P~~aL~-----~~~~~~~~ 60 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLA--------WLTPL----LHGEND---TIALYPTNALI-----EDQTEAIK 60 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHH--------HHHHH----HHcCCC---EEEEeChHHHH-----HHHHHHHH
Confidence 59999999999843 478999999999999 66666 433334 49999999999 6666665
Q ss_pred --c--C-CCCceeEEEEeCCCChh--hHH-------------HH-HHHHHhcCCCeeEEEECCCccccccHHHHHHHH--
Q psy7952 131 --T--G-RSDLYQLELIVSGQTKT--ENK-------------AI-LEELRLVKPRIKLLYVTPERAVTESFHYLLQHL-- 187 (444)
Q Consensus 131 --~--~-~~~~i~~~~~~~~~~~~--~~~-------------~~-~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~-- 187 (444)
. + +.....+..++|....+ ... .. ...+ ....++|+++||+++. .+++..
T Consensus 61 ~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~--~~~~p~illT~p~~l~-----~llr~~~~ 133 (357)
T TIGR03158 61 EFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPI--GTSTPIILLTNPDIFV-----YLTRFAYI 133 (357)
T ss_pred HHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHH--hcCCCCEEEecHHHHH-----HHHhhhcc
Confidence 1 1 11236667777753221 000 00 0011 1346789999999974 222211
Q ss_pred -------HhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEe
Q psy7952 188 -------VRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK 260 (444)
Q Consensus 188 -------~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~ 260 (444)
..+.++++||+||+|.+..++......+.....+........+++++|||+++...+.+.....+..++....
T Consensus 134 ~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~ 213 (357)
T TIGR03158 134 DRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPID 213 (357)
T ss_pred CcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeec
Confidence 1246899999999999876543222222222233333333478999999999887777665432333332222
Q ss_pred cC-----------CC------C---CCceEEEEEccc-chhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHH
Q psy7952 261 TS-----------TF------R---SNLFYDVIFDDL-LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADA 319 (444)
Q Consensus 261 ~~-----------~~------~---~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~ 319 (444)
.. .. + +.+...+..... .......+.+.+.+.+... .++++||||+|++.++.++..
T Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~--~~~k~LIf~nt~~~~~~l~~~ 291 (357)
T TIGR03158 214 GEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQL--PGERGAIILDSLDEVNRLSDL 291 (357)
T ss_pred CcccccCCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhcc--CCCeEEEEECCHHHHHHHHHH
Confidence 21 00 1 233333333111 1111222223333333222 467999999999999999999
Q ss_pred HHhh------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCC
Q psy7952 320 LRRK------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAG 382 (444)
Q Consensus 320 L~~~------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~ 382 (444)
|+.. +++.+|.. .++..+||||+++++|+|+|.+ +|| ++ |.+...|+||+||+|
T Consensus 292 L~~~~~~~~~~~l~g~~~~~~R~~------~~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 292 LQQQGLGDDIGRITGFAPKKDRER------AMQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HhhhCCCceEEeeecCCCHHHHHH------hccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9863 44555543 3478999999999999999986 555 45 889999999999997
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-31 Score=266.87 Aligned_cols=320 Identities=18% Similarity=0.145 Sum_probs=216.6
Q ss_pred HHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhh
Q psy7952 37 TAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILS 116 (444)
Q Consensus 37 ~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~ 116 (444)
.++.++.+|..+ +++|..++..++.| + +..+.||+|||++ +.+|+ +......+.++|++||++
T Consensus 93 rEa~~R~lg~~p--~~VQ~~~~~~ll~G-~--Iae~~TGeGKTla--------~~lp~----~~~al~G~~v~VvTptre 155 (656)
T PRK12898 93 REASGRVLGQRH--FDVQLMGGLALLSG-R--LAEMQTGEGKTLT--------ATLPA----GTAALAGLPVHVITVNDY 155 (656)
T ss_pred HHHHHHHhCCCC--ChHHHHHHHHHhCC-C--eeeeeCCCCcHHH--------HHHHH----HHHhhcCCeEEEEcCcHH
Confidence 456677778885 56999999999999 5 9999999999999 77777 322223346799999999
Q ss_pred hhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh-----
Q psy7952 117 SFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR----- 189 (444)
Q Consensus 117 L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~----- 189 (444)
|+ .|..+.+..+ .++ +++..+.|+.+...+... ..++|+|+|...+. |+++..++..
T Consensus 156 LA--~qdae~~~~l~~~lG---lsv~~i~gg~~~~~r~~~--------y~~dIvygT~~e~~---FDyLrd~~~~~~~~~ 219 (656)
T PRK12898 156 LA--ERDAELMRPLYEALG---LTVGCVVEDQSPDERRAA--------YGADITYCTNKELV---FDYLRDRLALGQRAS 219 (656)
T ss_pred HH--HHHHHHHHHHHhhcC---CEEEEEeCCCCHHHHHHH--------cCCCEEEECCCchh---hhhcccccccccccc
Confidence 99 4446666665 556 999999998765433322 37899999998886 3444433221
Q ss_pred --------------------hCCccEEEEecccccc-ccC-----------CC-cHHHHHHHHHHHHh------------
Q psy7952 190 --------------------YNKLAYIVVDEAHCVS-EWG-----------HD-FRPTYRRLGELRQF------------ 224 (444)
Q Consensus 190 --------------------~~~~~~iViDE~H~~~-~~~-----------~~-~~~~~~~l~~~~~~------------ 224 (444)
...+.+.||||+|.++ |.. .. ....|..+..+.+.
T Consensus 220 ~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~ 299 (656)
T PRK12898 220 DARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAA 299 (656)
T ss_pred chhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECC
Confidence 2457999999999773 311 00 00011110000000
Q ss_pred --------------------------------------------------------------------------------
Q psy7952 225 -------------------------------------------------------------------------------- 224 (444)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (444)
T Consensus 300 ~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQ 379 (656)
T PRK12898 300 EKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQ 379 (656)
T ss_pred CCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHH
Confidence
Q ss_pred -------------------------hCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceE--E-EEEcc
Q psy7952 225 -------------------------TGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFY--D-VIFDD 276 (444)
Q Consensus 225 -------------------------~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~ 276 (444)
|....++.+||||.... .+.+.+..++. ++.+ +..+|.... . .....
T Consensus 380 aieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~-~~El~~~y~l~-vv~I---Pt~kp~~r~~~~~~v~~t 454 (656)
T PRK12898 380 MIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREV-AGELWSVYGLP-VVRI---PTNRPSQRRHLPDEVFLT 454 (656)
T ss_pred HHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHH-HHHHHHHHCCC-eEEe---CCCCCccceecCCEEEeC
Confidence 00011247788887753 45556655543 2222 222333211 1 12221
Q ss_pred cchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh--------cCHHHHHHHHHHHhcCCccEEEEcC
Q psy7952 277 LLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--------VNKHERSRVQESFMRGEINVITATI 348 (444)
Q Consensus 277 ~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~--------~~~~~r~~~~~~f~~g~~~vLvaT~ 348 (444)
...+...+.+.+... ...+.++||||+|++.++.++..|.+. -....|+..+..++.+...|+|||+
T Consensus 455 -~~~K~~aL~~~i~~~----~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATd 529 (656)
T PRK12898 455 -AAAKWAAVAARVREL----HAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATN 529 (656)
T ss_pred -HHHHHHHHHHHHHHH----HhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEcc
Confidence 234444555554442 224578999999999999999999877 2345666667777777778999999
Q ss_pred ccccccccC---Ccc-----EEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 349 SFGMGIDRQ---NVR-----FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 349 ~~~~Gidi~---~~~-----~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
++++|+||+ ++. +||+++.|.|.+.|.||+||+||.|.+|.++.+++.+|.
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999999 666 999999999999999999999999999999999997653
No 72
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=252.16 Aligned_cols=328 Identities=18% Similarity=0.229 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHH-ccCCcEEEEccCCCcccccccccccceEEeCCCcccccc-CCccceeEE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHIL-LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN-GNVRSRNGW 110 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~-~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~-~~~~~~vli 110 (444)
++.+.+.++. .|++.+. |.|.-++..-+ .| +|.+++++|+||||+++.+ .. +..+.. ++.- ||
T Consensus 202 pe~fk~~lk~-~G~~eLl-PVQ~laVe~GLLeG-~nllVVSaTasGKTLIgEl--------AG-i~~~l~~g~Km---lf 266 (830)
T COG1202 202 PEKFKRMLKR-EGIEELL-PVQVLAVEAGLLEG-ENLLVVSATASGKTLIGEL--------AG-IPRLLSGGKKM---LF 266 (830)
T ss_pred cHHHHHHHHh-cCcceec-chhhhhhhhccccC-CceEEEeccCCCcchHHHh--------hC-cHHHHhCCCeE---EE
Confidence 4445555555 3899866 79999998655 56 9999999999999999544 33 222444 4455 99
Q ss_pred EcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH
Q psy7952 111 ISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV 188 (444)
Q Consensus 111 l~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~ 188 (444)
++|..+|+ +|..+.| +...-.+++..-.|-........- ..-....++||+|+|+|-+ +++++.-.
T Consensus 267 LvPLVALA-----NQKy~dF~~rYs~LglkvairVG~srIk~~~~p--v~~~t~~dADIIVGTYEGi-----D~lLRtg~ 334 (830)
T COG1202 267 LVPLVALA-----NQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP--VVVDTSPDADIIVGTYEGI-----DYLLRTGK 334 (830)
T ss_pred EehhHHhh-----cchHHHHHHHhhcccceEEEEechhhhcccCCc--cccCCCCCCcEEEeechhH-----HHHHHcCC
Confidence 99999999 4555555 222222555544443322211100 0011246789999999986 77777778
Q ss_pred hhCCccEEEEeccccccc--cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCC
Q psy7952 189 RYNKLAYIVVDEAHCVSE--WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRS 266 (444)
Q Consensus 189 ~~~~~~~iViDE~H~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 266 (444)
.+.+++.|||||+|.+.+ .|+-.. ..|.++...++ .+|+|++|||..++. .+...++.. .+.-.....
T Consensus 335 ~lgdiGtVVIDEiHtL~deERG~RLd---GLI~RLr~l~~-~AQ~i~LSATVgNp~--elA~~l~a~----lV~y~~RPV 404 (830)
T COG1202 335 DLGDIGTVVIDEIHTLEDEERGPRLD---GLIGRLRYLFP-GAQFIYLSATVGNPE--ELAKKLGAK----LVLYDERPV 404 (830)
T ss_pred cccccceEEeeeeeeccchhcccchh---hHHHHHHHhCC-CCeEEEEEeecCChH--HHHHHhCCe----eEeecCCCC
Confidence 889999999999999966 343322 22334444455 499999999997754 446666543 122222234
Q ss_pred CceEEEEEcccchhhHHHHHHHHHHHhccCCC--CCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHH
Q psy7952 267 NLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNK--ANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQE 334 (444)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~ 334 (444)
++.....+......++..+..+++.-.....+ -.+++|||++|+..|..+++.|..+ ++..+|..+..
T Consensus 405 plErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~ 484 (830)
T COG1202 405 PLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVER 484 (830)
T ss_pred ChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHH
Confidence 55666666666666766666666654433332 3579999999999999999999966 88999999999
Q ss_pred HHhcCCccEEEEcCccccccccCCccEEE---EeC-CCCCHHHHHHHhccCCCCCC--ceeEEEEeccc
Q psy7952 335 SFMRGEINVITATISFGMGIDRQNVRFVV---HWG-MPSSIPAYYQESGRAGRDGL--QSYCRIYHSEH 397 (444)
Q Consensus 335 ~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi---~~~-~p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~ 397 (444)
.|.++++.++|+|-+++.|+|+|.-.+|+ -++ ---|+.+|.||.|||||.+. .|.+++++.+.
T Consensus 485 ~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 485 AFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999999999999999999655544 122 23489999999999999864 58888877643
No 73
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-31 Score=269.32 Aligned_cols=309 Identities=15% Similarity=0.107 Sum_probs=193.8
Q ss_pred hHHHHHHHHHHccC--CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhh
Q psy7952 52 ELQKKAIRHILLRT--HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~--~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
+||.+++..+..+. ++.++++|||+|||++++.++. .+ . .++||+||+..|+ .||.+++..
T Consensus 258 pYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~----------~l--~---k~tLILvps~~Lv--~QW~~ef~~ 320 (732)
T TIGR00603 258 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC----------TV--K---KSCLVLCTSAVSV--EQWKQQFKM 320 (732)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH----------Hh--C---CCEEEEeCcHHHH--HHHHHHHHH
Confidence 79999999988542 4789999999999999543211 11 2 3459999999999 444555554
Q ss_pred hcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHH--HHHH--HHHhhCCccEEEEecccccc
Q psy7952 130 VTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFH--YLLQ--HLVRYNKLAYIVVDEAHCVS 205 (444)
Q Consensus 130 l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~--~~~~~~~~~~iViDE~H~~~ 205 (444)
+. ..+...+..++|+.... ..+..+|+|+|++++.+..-. .... .......+++||+||||++.
T Consensus 321 ~~-~l~~~~I~~~tg~~k~~-----------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp 388 (732)
T TIGR00603 321 WS-TIDDSQICRFTSDAKER-----------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP 388 (732)
T ss_pred hc-CCCCceEEEEecCcccc-----------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc
Confidence 41 21224555666643221 023478999999987532100 0011 11222478999999999974
Q ss_pred ccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHH--HHHHHhcCCCCeEEEec----CCCCCCceEEEEEcccch
Q psy7952 206 EWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQ--DIISVLKFNKPYKVFKT----STFRSNLFYDVIFDDLLK 279 (444)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~--~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 279 (444)
.. .+..+ ...+.. ...++|||||.+.... .+...+| +.-+..... .....+..+.....+...
T Consensus 389 A~------~fr~i---l~~l~a-~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~ 457 (732)
T TIGR00603 389 AA------MFRRV---LTIVQA-HCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTP 457 (732)
T ss_pred HH------HHHHH---HHhcCc-CcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCH
Confidence 32 22222 222222 5689999999764322 2222222 111111000 111112222111111111
Q ss_pred h------------------hHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----cCHHHHHHHHHHH
Q psy7952 280 D------------------SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-----VNKHERSRVQESF 336 (444)
Q Consensus 280 ~------------------~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-----~~~~~r~~~~~~f 336 (444)
. ....+...+..++......+.++||||.+...++.++..|... ++..+|..+++.|
T Consensus 458 ~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~F 537 (732)
T TIGR00603 458 EFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNF 537 (732)
T ss_pred HHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHH
Confidence 0 0011122333333332236789999999999999999988544 8899999999999
Q ss_pred hcC-CccEEEEcCccccccccCCccEEEEeCCC-CCHHHHHHHhccCCCCCCcee-------EEEEecccchh
Q psy7952 337 MRG-EINVITATISFGMGIDRQNVRFVVHWGMP-SSIPAYYQESGRAGRDGLQSY-------CRIYHSEHSKK 400 (444)
Q Consensus 337 ~~g-~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p-~s~~~~~Qr~GR~~R~g~~g~-------~~~~~~~~~~~ 400 (444)
+.| .+++||+|+++.+|+|+|++++||+++.| .|...|+||+||++|.+.+|. ++.+++++..+
T Consensus 538 r~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 538 QHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred HhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 875 78999999999999999999999999987 599999999999999876544 37777766554
No 74
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=6e-31 Score=277.88 Aligned_cols=313 Identities=16% Similarity=0.239 Sum_probs=205.5
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
.+||.++...++.+ ++++++|||+|||++|++. + ...+ .....++||++|+++|+ .|+.+.+
T Consensus 17 r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~--------i-~~~l--~~~~~~vLvl~Pt~~L~-----~Q~~~~~ 78 (773)
T PRK13766 17 RLYQQLLAATALKK--NTLVVLPTGLGKTAIALLV--------I-AERL--HKKGGKVLILAPTKPLV-----EQHAEFF 78 (773)
T ss_pred cHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHH--------H-HHHH--HhCCCeEEEEeCcHHHH-----HHHHHHH
Confidence 47999999998886 8999999999999984332 2 1112 12335779999999999 5555555
Q ss_pred --cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccC
Q psy7952 131 --TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG 208 (444)
Q Consensus 131 --~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~ 208 (444)
..+....++..++|+.....+...+ .+++|+|+||+.+. ..++.......++++||+||||++.+..
T Consensus 79 ~~~~~~~~~~v~~~~g~~~~~~r~~~~-------~~~~iiv~T~~~l~----~~l~~~~~~~~~~~liVvDEaH~~~~~~ 147 (773)
T PRK13766 79 RKFLNIPEEKIVVFTGEVSPEKRAELW-------EKAKVIVATPQVIE----NDLIAGRISLEDVSLLIFDEAHRAVGNY 147 (773)
T ss_pred HHHhCCCCceEEEEeCCCCHHHHHHHH-------hCCCEEEECHHHHH----HHHHcCCCChhhCcEEEEECCccccccc
Confidence 2332224778888887766544433 46799999999875 3334445556789999999999986422
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHH--HHHHHhcCCCCeEEEecC-------CCCCCceEEE-------
Q psy7952 209 HDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQ--DIISVLKFNKPYKVFKTS-------TFRSNLFYDV------- 272 (444)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~--~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~------- 272 (444)
. + ..+...+......+++++|||||...... .+.+.++... +.+.... ...+.+.+..
T Consensus 148 ~-~----~~i~~~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~-v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~ 221 (773)
T PRK13766 148 A-Y----VYIAERYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEH-VEVRTEDDPDVKPYVHKVKIEWVRVELPEEL 221 (773)
T ss_pred c-H----HHHHHHHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceE-EEEcCCCChhHHhhhccceeEEEEeCCcHHH
Confidence 1 1 22333332333447799999998654211 1122221110 0000000 0000000000
Q ss_pred -----------------------EE--c----------------------------------------------------
Q psy7952 273 -----------------------IF--D---------------------------------------------------- 275 (444)
Q Consensus 273 -----------------------~~--~---------------------------------------------------- 275 (444)
.. .
T Consensus 222 ~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 301 (773)
T PRK13766 222 KEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVE 301 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 00 0
Q ss_pred -----------------------------------------ccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHH
Q psy7952 276 -----------------------------------------DLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTT 314 (444)
Q Consensus 276 -----------------------------------------~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~ 314 (444)
.....+...+.+.+.+.... ..+.++||||+++++|+
T Consensus 302 ~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~--~~~~kvlIF~~~~~t~~ 379 (773)
T PRK13766 302 ALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGK--NPDSRIIVFTQYRDTAE 379 (773)
T ss_pred HHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhc--CCCCeEEEEeCcHHHHH
Confidence 00001111222222222221 25789999999999999
Q ss_pred HHHHHHHhh------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHH
Q psy7952 315 DLADALRRK------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQ 376 (444)
Q Consensus 315 ~l~~~L~~~------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q 376 (444)
.+++.|... +++.+|..++++|++|+.++||||+++++|+|+|++++||+||+|++...|+|
T Consensus 380 ~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQ 459 (773)
T PRK13766 380 KIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQ 459 (773)
T ss_pred HHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHH
Confidence 999999553 56688999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCceeEEEEecccchhh
Q psy7952 377 ESGRAGRDGLQSYCRIYHSEHSKKS 401 (444)
Q Consensus 377 r~GR~~R~g~~g~~~~~~~~~~~~~ 401 (444)
|+||+||.|. |.++.++..+..+.
T Consensus 460 R~GR~gR~~~-~~v~~l~~~~t~ee 483 (773)
T PRK13766 460 RKGRTGRQEE-GRVVVLIAKGTRDE 483 (773)
T ss_pred HhcccCcCCC-CEEEEEEeCCChHH
Confidence 9999999865 67777776655443
No 75
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.98 E-value=8.5e-31 Score=268.17 Aligned_cols=314 Identities=19% Similarity=0.221 Sum_probs=248.8
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHcc-----CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccce
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLR-----THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSR 107 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~-----~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~ 107 (444)
+.+..+.+...|+|+. |+-|..|++.+.+. ..|-+||+.-|.|||.+|+=| ++.+ +..+ +.
T Consensus 580 d~~~q~~F~~~FPyeE--T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRA-----AFkA----V~~G---KQ 645 (1139)
T COG1197 580 DTEWQEEFEASFPYEE--TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRA-----AFKA----VMDG---KQ 645 (1139)
T ss_pred ChHHHHHHHhcCCCcC--CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHH-----HHHH----hcCC---Ce
Confidence 5566788999999997 78999999999862 267899999999999995432 2223 4444 45
Q ss_pred eEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 185 (444)
|.++|||.-|+ +|+++.+ ++.+-++++..+..-.+..+....++.+. .+..||+||| |.+++
T Consensus 646 VAvLVPTTlLA-----~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la--~G~vDIvIGT---------HrLL~ 709 (1139)
T COG1197 646 VAVLVPTTLLA-----QQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLA--EGKVDIVIGT---------HRLLS 709 (1139)
T ss_pred EEEEcccHHhH-----HHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHh--cCCccEEEec---------hHhhC
Confidence 69999999999 8999988 55555599999999999999999999887 5899999999 88888
Q ss_pred HHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCC
Q psy7952 186 HLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFR 265 (444)
Q Consensus 186 ~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (444)
....+++++++||||=|++ |..-. ..|+ .+..++-++-|||||.|...++ ...|+.+--.+..++..|
T Consensus 710 kdv~FkdLGLlIIDEEqRF---GVk~K---EkLK----~Lr~~VDvLTLSATPIPRTL~M--sm~GiRdlSvI~TPP~~R 777 (1139)
T COG1197 710 KDVKFKDLGLLIIDEEQRF---GVKHK---EKLK----ELRANVDVLTLSATPIPRTLNM--SLSGIRDLSVIATPPEDR 777 (1139)
T ss_pred CCcEEecCCeEEEechhhc---CccHH---HHHH----HHhccCcEEEeeCCCCcchHHH--HHhcchhhhhccCCCCCC
Confidence 8899999999999999994 42122 2222 2334588999999999988874 445555554444444555
Q ss_pred CCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------------cCHHHHHHHH
Q psy7952 266 SNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------------VNKHERSRVQ 333 (444)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------------~~~~~r~~~~ 333 (444)
-++.-.+...+. ..+++.+.+....++++...+|.++..++++..|+.. |+..+-+.++
T Consensus 778 ~pV~T~V~~~d~---------~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM 848 (1139)
T COG1197 778 LPVKTFVSEYDD---------LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVM 848 (1139)
T ss_pred cceEEEEecCCh---------HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHH
Confidence 554433333221 2333444444447999999999999999999999988 9999999999
Q ss_pred HHHhcCCccEEEEcCccccccccCCccEEEEeCCC-CCHHHHHHHhccCCCCCCceeEEEEeccc
Q psy7952 334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMP-SSIPAYYQESGRAGRDGLQSYCRIYHSEH 397 (444)
Q Consensus 334 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p-~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 397 (444)
..|-+|+.+|||||.+.+.|||||+++++|..+.. ....++.|..||+||....+||+.++.+.
T Consensus 849 ~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 849 LDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred HHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 99999999999999999999999999998855543 36899999999999999999999999854
No 76
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=9e-31 Score=265.68 Aligned_cols=319 Identities=20% Similarity=0.206 Sum_probs=210.0
Q ss_pred HHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchh
Q psy7952 36 LTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPIL 115 (444)
Q Consensus 36 ~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~ 115 (444)
+.++.++.+|.. |+++|..+...+++| + +..+.||+|||++ +.+|+++. ...+ +.++|++||+
T Consensus 67 vrea~~R~~g~~--p~~vQl~~~~~l~~G-~--Iaem~TGeGKTL~--------a~lp~~l~-al~G---~~v~VvTpt~ 129 (790)
T PRK09200 67 VREAAKRVLGMR--PYDVQLIGALVLHEG-N--IAEMQTGEGKTLT--------ATMPLYLN-ALEG---KGVHLITVND 129 (790)
T ss_pred HHHHHHHHhCCC--CchHHHHhHHHHcCC-c--eeeecCCCcchHH--------HHHHHHHH-HHcC---CCeEEEeCCH
Confidence 346677777886 467999999988877 4 9999999999999 66666212 2233 3459999999
Q ss_pred hhhcccCccchHhhh--cCCCCceeEEEEeCCCC-hhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH-----
Q psy7952 116 SSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQT-KTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL----- 187 (444)
Q Consensus 116 ~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~----- 187 (444)
.|| .|..+.+..+ ..+ +.+..+.|+.+ ...+... ..++|+++||..+. |+++..+.
T Consensus 130 ~LA--~qd~e~~~~l~~~lG---l~v~~i~g~~~~~~~r~~~--------y~~dIvygT~~~l~---fDyLrd~~~~~~~ 193 (790)
T PRK09200 130 YLA--KRDAEEMGQVYEFLG---LTVGLNFSDIDDASEKKAI--------YEADIIYTTNSELG---FDYLRDNLADSKE 193 (790)
T ss_pred HHH--HHHHHHHHHHHhhcC---CeEEEEeCCCCcHHHHHHh--------cCCCEEEECCcccc---chhHHhccccchh
Confidence 999 3334444555 556 99999999988 4444332 25899999999985 34333332
Q ss_pred -HhhCCccEEEEecccccc-ccC--------C--CcHHHHHHHHHHHHhh------------------------------
Q psy7952 188 -VRYNKLAYIVVDEAHCVS-EWG--------H--DFRPTYRRLGELRQFT------------------------------ 225 (444)
Q Consensus 188 -~~~~~~~~iViDE~H~~~-~~~--------~--~~~~~~~~l~~~~~~~------------------------------ 225 (444)
.....+.++|+||+|.++ +.. . .-...|..+..+.+.+
T Consensus 194 ~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~ 273 (790)
T PRK09200 194 DKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFG 273 (790)
T ss_pred hhcccccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcC
Confidence 234678999999999883 311 0 0000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy7952 226 -------------------------------------------------------------------------------- 225 (444)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (444)
T Consensus 274 i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~ 353 (790)
T PRK09200 274 IDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMAS 353 (790)
T ss_pred CccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhh
Confidence
Q ss_pred -------CCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEE---EEcccchhhHHHHHHHHHHHhcc
Q psy7952 226 -------GNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV---IFDDLLKDSYAHVKEFIEKCLGK 295 (444)
Q Consensus 226 -------~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~ 295 (444)
....++.+||+|... ....+.+..++ .+..-+..+|...... ... ....+...+...+...
T Consensus 354 It~q~~fr~Y~kl~GmTGTa~t-~~~e~~~~Y~l----~v~~IPt~kp~~r~d~~~~i~~-~~~~K~~al~~~i~~~--- 424 (790)
T PRK09200 354 ITIQNLFRMFPKLSGMTGTAKT-EEKEFFEVYNM----EVVQIPTNRPIIRIDYPDKVFV-TLDEKYKAVIEEVKER--- 424 (790)
T ss_pred hhHHHHHHHhHHHhccCCCChH-HHHHHHHHhCC----cEEECCCCCCcccccCCCeEEc-CHHHHHHHHHHHHHHH---
Confidence 000124666777533 22333333332 2222334455443222 111 1233444444444432
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCcccccccc---CCcc--
Q psy7952 296 DNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDR---QNVR-- 360 (444)
Q Consensus 296 ~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi---~~~~-- 360 (444)
...+.++||||+|++.++.++..|.+. +...++..+...++.| +|+|||++++||+|+ |++.
T Consensus 425 -~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ 501 (790)
T PRK09200 425 -HETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHEL 501 (790)
T ss_pred -HhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccc
Confidence 225889999999999999999999887 4455555555555444 899999999999999 6898
Q ss_pred ---EEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 361 ---FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 361 ---~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
+||+++.|.|.+.|.||+||+||.|.+|.++.|++.+|.
T Consensus 502 GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 502 GGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred cCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 999999999999999999999999999999999986554
No 77
>KOG0951|consensus
Probab=99.97 E-value=4.2e-30 Score=259.55 Aligned_cols=368 Identities=17% Similarity=0.221 Sum_probs=250.4
Q ss_pred hCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCcc---ceeEEEcchhhhhcc
Q psy7952 44 FGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVR---SRNGWISPILSSFYL 120 (444)
Q Consensus 44 ~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~---~~vlil~P~~~L~~~ 120 (444)
+|...|. .+|.......+.+..+++++||||+|||.+|++.|+.-.--.. -..++.. -++++++|.++|+
T Consensus 305 ~g~~sLN-rIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~----r~dgs~nl~~fKIVYIAPmKaLv-- 377 (1674)
T KOG0951|consen 305 FGKQSLN-RIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHL----REDGSVNLAPFKIVYIAPMKALV-- 377 (1674)
T ss_pred ccchhhh-HHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccc----ccccceecccceEEEEeeHHHHH--
Confidence 3666655 7999999999999899999999999999997776543111111 0011111 3789999999999
Q ss_pred cCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh---CCccE
Q psy7952 121 RFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY---NKLAY 195 (444)
Q Consensus 121 ~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~---~~~~~ 195 (444)
++++..+ ++.+-++.|...+|+....... .....|+|+|||+- +-+.+...+. .-+++
T Consensus 378 ---qE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---------ieeTqVIV~TPEK~-----DiITRk~gdraY~qlvrL 440 (1674)
T KOG0951|consen 378 ---QEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---------IEETQVIVTTPEKW-----DIITRKSGDRAYEQLVRL 440 (1674)
T ss_pred ---HHHHHHHHhhccccCcEEEEecccccchhhh---------hhcceeEEeccchh-----hhhhcccCchhHHHHHHH
Confidence 8888877 3334449999999987643221 24689999999993 3333332222 23689
Q ss_pred EEEeccccccc-cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCC-CceEEEE
Q psy7952 196 IVVDEAHCVSE-WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRS-NLFYDVI 273 (444)
Q Consensus 196 iViDE~H~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 273 (444)
+||||+|.+.+ .|.-......+..+....-...++++++|||+|+ +.++..+++...+-.....+..|| ++.++++
T Consensus 441 lIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN--y~DV~~Fl~v~~~glf~fd~syRpvPL~qq~I 518 (1674)
T KOG0951|consen 441 LIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPN--YEDVASFLRVDPEGLFYFDSSYRPVPLKQQYI 518 (1674)
T ss_pred HhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCc--hhhhHHHhccCcccccccCcccCcCCccceEe
Confidence 99999999855 4543333333333332233446899999999987 567788776655433333333343 3444443
Q ss_pred Ec--ccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------------------------
Q psy7952 274 FD--DLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK---------------------------- 323 (444)
Q Consensus 274 ~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~---------------------------- 323 (444)
-. ...........+.+-+.+..+. ..+++|||++|++++.+.|..++..
T Consensus 519 gi~ek~~~~~~qamNe~~yeKVm~~a-gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~ 597 (1674)
T KOG0951|consen 519 GITEKKPLKRFQAMNEACYEKVLEHA-GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQA 597 (1674)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHhC-CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcc
Confidence 22 2222333444444444444433 3489999999999999999999854
Q ss_pred -------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEE----EeCC------CCCHHHH
Q psy7952 324 -------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVV----HWGM------PSSIPAY 374 (444)
Q Consensus 324 -------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi----~~~~------p~s~~~~ 374 (444)
|+..+|..+++.|+.|.++++++|-.+++|+|+|.-.++| .|++ +.|+.+.
T Consensus 598 kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv 677 (1674)
T KOG0951|consen 598 KNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDV 677 (1674)
T ss_pred cChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHH
Confidence 8899999999999999999999999999999999655555 3332 3489999
Q ss_pred HHHhccCCCCCCc--eeEEEEecccchhhHHHHHhhccchhHH-----------HHHHHHhhHHHHHHHhhhceeee
Q psy7952 375 YQESGRAGRDGLQ--SYCRIYHSEHSKKSLEYVIKTDTSTKRE-----------QLELKFKNYLSMLEYCEQGYFLV 438 (444)
Q Consensus 375 ~Qr~GR~~R~g~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 438 (444)
+||.||+||.+.. |..+++....+......+....++.+.. ++-..+++.+++++|...+|-+.
T Consensus 678 ~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyv 754 (1674)
T KOG0951|consen 678 MQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYV 754 (1674)
T ss_pred HHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEE
Confidence 9999999998654 5556666666666666666666555433 33333566888888888777654
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.97 E-value=2.4e-30 Score=258.50 Aligned_cols=321 Identities=17% Similarity=0.156 Sum_probs=218.9
Q ss_pred HHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchh
Q psy7952 36 LTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPIL 115 (444)
Q Consensus 36 ~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~ 115 (444)
+.++.++.+|..+ ++.|..+...+..| + +..++||+|||++ +.+|+++..+. +. .|.|++||.
T Consensus 45 vrEa~~R~lg~~p--~~vQlig~~~l~~G-~--Iaem~TGeGKTLv--------a~lpa~l~aL~-G~---~V~VvTpt~ 107 (745)
T TIGR00963 45 VREASKRVLGMRP--FDVQLIGGIALHKG-K--IAEMKTGEGKTLT--------ATLPAYLNALT-GK---GVHVVTVND 107 (745)
T ss_pred HHHHHHHHhCCCc--cchHHhhhhhhcCC-c--eeeecCCCccHHH--------HHHHHHHHHHh-CC---CEEEEcCCH
Confidence 4467777789886 45899888888777 3 8999999999999 55565223232 22 469999999
Q ss_pred hhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH------H
Q psy7952 116 SSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH------L 187 (444)
Q Consensus 116 ~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~------~ 187 (444)
.|| .|..+.+..+ ..+ +++..+.|+.+...+...+ .++|+|+||..|. |+.+..+ .
T Consensus 108 ~LA--~qdae~~~~l~~~LG---Lsv~~i~g~~~~~~r~~~y--------~~dIvyGT~~rlg---fDyLrd~~~~~~~~ 171 (745)
T TIGR00963 108 YLA--QRDAEWMGQVYRFLG---LSVGLILSGMSPEERREAY--------ACDITYGTNNELG---FDYLRDNMAHSKEE 171 (745)
T ss_pred HHH--HHHHHHHHHHhccCC---CeEEEEeCCCCHHHHHHhc--------CCCEEEECCCchh---hHHHhcccccchhh
Confidence 999 3334555555 456 9999999998866544433 5799999999984 2444433 2
Q ss_pred HhhCCccEEEEeccccccc-cC--------C--CcHHHHH----------------------------------------
Q psy7952 188 VRYNKLAYIVVDEAHCVSE-WG--------H--DFRPTYR---------------------------------------- 216 (444)
Q Consensus 188 ~~~~~~~~iViDE~H~~~~-~~--------~--~~~~~~~---------------------------------------- 216 (444)
..+..++++|+||+|.++- .. . .....|.
T Consensus 172 ~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~ 251 (745)
T TIGR00963 172 KVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGV 251 (745)
T ss_pred hhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCC
Confidence 4567899999999999843 11 0 0000000
Q ss_pred -------------HHHHHHHh-----------------------------------------------------------
Q psy7952 217 -------------RLGELRQF----------------------------------------------------------- 224 (444)
Q Consensus 217 -------------~l~~~~~~----------------------------------------------------------- 224 (444)
.+...+++
T Consensus 252 ~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~I 331 (745)
T TIGR00963 252 DNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATI 331 (745)
T ss_pred ccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeee
Confidence 00000000
Q ss_pred -----hCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEE---EEcccchhhHHHHHHHHHHHhccC
Q psy7952 225 -----TGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV---IFDDLLKDSYAHVKEFIEKCLGKD 296 (444)
Q Consensus 225 -----~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~ 296 (444)
|....++.+||+|... ....+.+..++. +..-+..+|...... .+.. ...++..+.+.+.+.
T Consensus 332 t~qn~Fr~Y~kl~GmTGTa~t-e~~E~~~iY~l~----vv~IPtnkp~~R~d~~d~i~~t-~~~k~~ai~~~i~~~---- 401 (745)
T TIGR00963 332 TYQNFFRLYEKLSGMTGTAKT-EEEEFEKIYNLE----VVVVPTNRPVIRKDLSDLVYKT-EEEKWKAVVDEIKER---- 401 (745)
T ss_pred eHHHHHhhCchhhccCCCcHH-HHHHHHHHhCCC----EEEeCCCCCeeeeeCCCeEEcC-HHHHHHHHHHHHHHH----
Confidence 0011134677777643 233344433322 222233444433221 1111 233444444444443
Q ss_pred CCCCceEEEEecccchHHHHHHHHHhh--------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCC-------ccE
Q psy7952 297 NKANNCGIIYCRTREHTTDLADALRRK--------VNKHERSRVQESFMRGEINVITATISFGMGIDRQN-------VRF 361 (444)
Q Consensus 297 ~~~~~~~iVf~~s~~~~~~l~~~L~~~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~-------~~~ 361 (444)
...+.++||||+|++.++.++..|.+. -...+|+..+..|+.+...|+|||++++||+||+. ..+
T Consensus 402 ~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~ 481 (745)
T TIGR00963 402 HAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLY 481 (745)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCChHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcE
Confidence 236889999999999999999999886 34778999999999999999999999999999997 559
Q ss_pred EEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 362 VVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 362 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
||+++.|.|.+.|.|++||+||.|.+|.+..+++.+|.
T Consensus 482 VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 482 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred EEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 99999999999999999999999999999999987654
No 79
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=9.1e-30 Score=249.26 Aligned_cols=286 Identities=19% Similarity=0.169 Sum_probs=184.1
Q ss_pred CchHHHHHHHHHHcc---CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccch
Q psy7952 50 KCELQKKAIRHILLR---THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDK 126 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~ 126 (444)
+.+||++++..+... .++.++++|||+|||.+|+- .+ ..... ++|||||+.+|+ .|.
T Consensus 37 lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~--------~~----~~~~~---~~Lvlv~~~~L~-----~Qw 96 (442)
T COG1061 37 LRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE--------AI----AELKR---STLVLVPTKELL-----DQW 96 (442)
T ss_pred CcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHH--------HH----HHhcC---CEEEEECcHHHH-----HHH
Confidence 348999999999983 38999999999999988321 11 11111 259999999999 333
Q ss_pred Hhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccc
Q psy7952 127 TSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVS 205 (444)
Q Consensus 127 ~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~ 205 (444)
.+.+ ...........+.++.... .+ ..|.|+|.+.+.... .........+++||+||||++.
T Consensus 97 ~~~~~~~~~~~~~~g~~~~~~~~~------------~~-~~i~vat~qtl~~~~----~l~~~~~~~~~liI~DE~Hh~~ 159 (442)
T COG1061 97 AEALKKFLLLNDEIGIYGGGEKEL------------EP-AKVTVATVQTLARRQ----LLDEFLGNEFGLIIFDEVHHLP 159 (442)
T ss_pred HHHHHHhcCCccccceecCceecc------------CC-CcEEEEEhHHHhhhh----hhhhhcccccCEEEEEccccCC
Confidence 3444 2221112334444433221 11 469999999975311 1111222369999999999976
Q ss_pred ccCCCcHHHHHHHHHHHHhhCCCCc-EEEEeccCCcchHHHHHHHhcCCCCeEEEec------CCCCCCceEEEEEc-cc
Q psy7952 206 EWGHDFRPTYRRLGELRQFTGNSIP-IIALTATAEPSVKQDIISVLKFNKPYKVFKT------STFRSNLFYDVIFD-DL 277 (444)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~-~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~-~~ 277 (444)
+.. + ..+..... . .. +++|||||................+...... .....+..+..... ..
T Consensus 160 a~~--~----~~~~~~~~---~-~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t 229 (442)
T COG1061 160 APS--Y----RRILELLS---A-AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLT 229 (442)
T ss_pred cHH--H----HHHHHhhh---c-ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccc
Confidence 533 2 22322222 2 33 8999999886543333333322222211111 01112222222221 11
Q ss_pred chhh--------------------------------HHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh--
Q psy7952 278 LKDS--------------------------------YAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-- 323 (444)
Q Consensus 278 ~~~~--------------------------------~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-- 323 (444)
.... .+.....+..++.... .+.+++|||.++.++..++..+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~ 308 (442)
T COG1061 230 EDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI 308 (442)
T ss_pred hHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc
Confidence 0000 0111223333333333 4779999999999999999998754
Q ss_pred -------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCC
Q psy7952 324 -------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 383 (444)
Q Consensus 324 -------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R 383 (444)
.+..+|..+++.|+.|.+++|+++.++.+|+|+|+++++|...++.|...|+||+||+.|
T Consensus 309 ~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 309 VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 789999999999999999999999999999999999999999999999999999999999
No 80
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.97 E-value=9.5e-30 Score=255.84 Aligned_cols=323 Identities=18% Similarity=0.177 Sum_probs=199.9
Q ss_pred HHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchh
Q psy7952 36 LTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPIL 115 (444)
Q Consensus 36 ~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~ 115 (444)
+.++-++.+|.. |.+.| ++..+... +..++.++||+|||++ +.+|+.+. ...+ +.++|++|++
T Consensus 59 vrEa~~R~lglr--pydVQ--lig~l~l~-~G~Iaem~TGeGKTLt--------a~Lpa~l~-aL~g---~~V~VVTpn~ 121 (762)
T TIGR03714 59 VREADKRVLGMF--PYDVQ--VLGAIVLH-QGNIAEMKTGEGKTLT--------ATMPLYLN-ALTG---KGAMLVTTND 121 (762)
T ss_pred HHHHHHhhcCCC--ccHHH--HHHHHHhc-CCceeEecCCcchHHH--------HHHHHHHH-hhcC---CceEEeCCCH
Confidence 345666666764 33355 55444444 4469999999999999 66666222 2222 2469999999
Q ss_pred hhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH------
Q psy7952 116 SSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL------ 187 (444)
Q Consensus 116 ~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~------ 187 (444)
+|+ .|+.+.+..+ .+| +++....++....... .+.+....+++|+++||+.|.. +.+..+.
T Consensus 122 yLA--~Rdae~m~~l~~~LG---Lsv~~~~~~s~~~~~~---~~~rr~~y~~dIvygTp~~Lgf---DyLrD~l~~~~~~ 190 (762)
T TIGR03714 122 YLA--KRDAEEMGPVYEWLG---LTVSLGVVDDPDEEYD---ANEKRKIYNSDIVYTTNSALGF---DYLIDNLASNKEG 190 (762)
T ss_pred HHH--HHHHHHHHHHHhhcC---CcEEEEECCCCccccC---HHHHHHhCCCCEEEECchhhhh---hHHHHHhhcchhh
Confidence 999 4445555555 556 7777766542111110 0001112478999999999952 3333322
Q ss_pred HhhCCccEEEEeccccccccC---------C--CcHHHHHHHHHHHHh--------------------------------
Q psy7952 188 VRYNKLAYIVVDEAHCVSEWG---------H--DFRPTYRRLGELRQF-------------------------------- 224 (444)
Q Consensus 188 ~~~~~~~~iViDE~H~~~~~~---------~--~~~~~~~~l~~~~~~-------------------------------- 224 (444)
.....+.++|+||||.++-.. . .-...|.....+.+.
T Consensus 191 ~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~ 270 (762)
T TIGR03714 191 KFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKI 270 (762)
T ss_pred cccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCC
Confidence 225678999999999984311 0 000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy7952 225 -------------------------------------------------------------------------------- 224 (444)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (444)
T Consensus 271 ~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~I 350 (762)
T TIGR03714 271 DNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASI 350 (762)
T ss_pred CccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeee
Confidence
Q ss_pred -----hCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEE---EEcccchhhHHHHHHHHHHHhccC
Q psy7952 225 -----TGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV---IFDDLLKDSYAHVKEFIEKCLGKD 296 (444)
Q Consensus 225 -----~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~ 296 (444)
|....++.+||+|... ....+.+..++ .+..-+..+|.+.... .+.. ...++..+.+.+.+.
T Consensus 351 t~qn~Fr~Y~kl~GmTGTa~~-~~~Ef~~iY~l----~v~~IPt~kp~~r~d~~d~i~~~-~~~K~~ai~~~i~~~---- 420 (762)
T TIGR03714 351 TYQNLFKMFNKLSGMTGTGKV-AEKEFIETYSL----SVVKIPTNKPIIRIDYPDKIYAT-LPEKLMATLEDVKEY---- 420 (762)
T ss_pred eHHHHHhhCchhcccCCCChh-HHHHHHHHhCC----CEEEcCCCCCeeeeeCCCeEEEC-HHHHHHHHHHHHHHH----
Confidence 0111234677777543 23334443332 2233334455444332 1211 233444455544443
Q ss_pred CCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccC---------
Q psy7952 297 NKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQ--------- 357 (444)
Q Consensus 297 ~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~--------- 357 (444)
...+.++||||+|++.++.++..|.+. +...++..+.+.++.| .|+|||++++||+|||
T Consensus 421 ~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~G 498 (762)
T TIGR03714 421 HETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELG 498 (762)
T ss_pred hhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccC
Confidence 225789999999999999999999887 5555555555544444 8999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 358 NVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 358 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
++++|+++++|....+ .||+||+||.|.+|.++.|++.++.
T Consensus 499 GL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 499 GLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 8999999999987666 9999999999999999999987654
No 81
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=1.3e-29 Score=270.84 Aligned_cols=296 Identities=19% Similarity=0.234 Sum_probs=187.7
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcc
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISP 113 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P 113 (444)
.++.+.+++..|+. |+++|+.+++.++.| +++++.||||+|||.. .+++ ...+.. ..++++|++|
T Consensus 65 ~~f~~~f~~~~g~~--p~~iQ~~~i~~il~G-~d~vi~ApTGsGKT~f---------~l~~-~~~l~~--~g~~vLIL~P 129 (1171)
T TIGR01054 65 KEFEEFFKKAVGSE--PWSIQKMWAKRVLRG-DSFAIIAPTGVGKTTF---------GLAM-SLFLAK--KGKRCYIILP 129 (1171)
T ss_pred HHHHHHHHHhcCCC--CcHHHHHHHHHHhCC-CeEEEECCCCCCHHHH---------HHHH-HHHHHh--cCCeEEEEeC
Confidence 44556666666765 578999999999999 9999999999999964 2233 111211 2356799999
Q ss_pred hhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhC
Q psy7952 114 ILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYN 191 (444)
Q Consensus 114 ~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~ 191 (444)
|++|+ .|+.+.+..+ ..+.....+..++|+.+..++......+. .++++|+|+||+.+. . ... .+.
T Consensus 130 TreLa--~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~--~~~~dIlV~Tp~rL~----~-~~~---~l~ 197 (1171)
T TIGR01054 130 TTLLV--IQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIE--NGDFDILITTTMFLS----K-NYD---ELG 197 (1171)
T ss_pred HHHHH--HHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHh--cCCCCEEEECHHHHH----H-HHH---Hhc
Confidence 99999 4445555555 23311122345788888776655555443 356899999999874 1 111 222
Q ss_pred -CccEEEEeccccccccCCC---------cHHH-HHHH-------------------HHHHHhhCCCCc--EEEEeccC-
Q psy7952 192 -KLAYIVVDEAHCVSEWGHD---------FRPT-YRRL-------------------GELRQFTGNSIP--IIALTATA- 238 (444)
Q Consensus 192 -~~~~iViDE~H~~~~~~~~---------~~~~-~~~l-------------------~~~~~~~~~~~~--~v~lSAT~- 238 (444)
+++++|+||||++++.+.. |... +..+ ...++..++..| ++++|||+
T Consensus 198 ~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~ 277 (1171)
T TIGR01054 198 PKFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGR 277 (1171)
T ss_pred CCCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCC
Confidence 8999999999999874321 3321 1111 112233344444 56789994
Q ss_pred CcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEeccc---chHHH
Q psy7952 239 EPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTR---EHTTD 315 (444)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~---~~~~~ 315 (444)
+......+ +...-.+.+........++...+.... .....+.+++.. .+.++||||+++ +.|++
T Consensus 278 p~~~~~~l---~r~ll~~~v~~~~~~~r~I~~~~~~~~---~~~~~L~~ll~~-------l~~~~IVFv~t~~~~~~a~~ 344 (1171)
T TIGR01054 278 PRGKRAKL---FRELLGFEVGGGSDTLRNVVDVYVEDE---DLKETLLEIVKK-------LGTGGIVYVSIDYGKEKAEE 344 (1171)
T ss_pred ccccHHHH---cccccceEecCccccccceEEEEEecc---cHHHHHHHHHHH-------cCCCEEEEEeccccHHHHHH
Confidence 44333221 111111122222222233333332221 112233333333 245789999999 99999
Q ss_pred HHHHHHhh------cCHHHHHHHHHHHhcCCccEEEE----cCccccccccCC-ccEEEEeCCCC
Q psy7952 316 LADALRRK------VNKHERSRVQESFMRGEINVITA----TISFGMGIDRQN-VRFVVHWGMPS 369 (444)
Q Consensus 316 l~~~L~~~------~~~~~r~~~~~~f~~g~~~vLva----T~~~~~Gidi~~-~~~Vi~~~~p~ 369 (444)
++..|.+. +....+...++.|++|+++|||| |+++++|||+|+ +++||++|+|.
T Consensus 345 l~~~L~~~g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 345 IAEFLENHGVKAVAYHATKPKEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHhCCceEEEEeCCCCHHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99999875 11111247899999999999999 599999999999 89999999996
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=2.1e-29 Score=258.39 Aligned_cols=315 Identities=18% Similarity=0.161 Sum_probs=208.2
Q ss_pred CchHHHHHHHHHHcc--CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchH
Q psy7952 50 KCELQKKAIRHILLR--THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKT 127 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~--~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~ 127 (444)
+|+.|+++++.+..+ .+++++.+|||+|||.+ |+.++ ...+..+ .++||++|+++|+ .|+.
T Consensus 145 Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v--------~l~~i-~~~l~~g---~~vLvLvPt~~L~-----~Q~~ 207 (679)
T PRK05580 145 LNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEV--------YLQAI-AEVLAQG---KQALVLVPEIALT-----PQML 207 (679)
T ss_pred CCHHHHHHHHHHHhccCCCcEEEECCCCChHHHH--------HHHHH-HHHHHcC---CeEEEEeCcHHHH-----HHHH
Confidence 468999999999973 47899999999999999 54433 3333333 3569999999999 7777
Q ss_pred hhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccc
Q psy7952 128 SIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVS 205 (444)
Q Consensus 128 ~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~ 205 (444)
+.+ .++ ..+..++|+.+..++...+..+. .+..+|+|+|+..+. ..+.++++||+||+|...
T Consensus 208 ~~l~~~fg---~~v~~~~s~~s~~~r~~~~~~~~--~g~~~IVVgTrsal~-----------~p~~~l~liVvDEeh~~s 271 (679)
T PRK05580 208 ARFRARFG---APVAVLHSGLSDGERLDEWRKAK--RGEAKVVIGARSALF-----------LPFKNLGLIIVDEEHDSS 271 (679)
T ss_pred HHHHHHhC---CCEEEEECCCCHHHHHHHHHHHH--cCCCCEEEeccHHhc-----------ccccCCCEEEEECCCccc
Confidence 777 456 78999999988877766655543 467899999987652 246789999999999875
Q ss_pred ccCCCcHHHH--HHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEe-cC----CCCCCceEEEEEcccc
Q psy7952 206 EWGHDFRPTY--RRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK-TS----TFRSNLFYDVIFDDLL 278 (444)
Q Consensus 206 ~~~~~~~~~~--~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~ 278 (444)
-++.. .+.+ ..+.... ....+.+++++||||+......+.. ..+.... .. ...|.+...-......
T Consensus 272 ~~~~~-~p~y~~r~va~~r-a~~~~~~~il~SATps~~s~~~~~~-----g~~~~~~l~~r~~~~~~p~v~~id~~~~~~ 344 (679)
T PRK05580 272 YKQQE-GPRYHARDLAVVR-AKLENIPVVLGSATPSLESLANAQQ-----GRYRLLRLTKRAGGARLPEVEIIDMRELLR 344 (679)
T ss_pred cccCc-CCCCcHHHHHHHH-hhccCCCEEEEcCCCCHHHHHHHhc-----cceeEEEeccccccCCCCeEEEEechhhhh
Confidence 43221 1111 2232222 2334589999999988665543321 1111111 11 1122221111100000
Q ss_pred h----hhHHHHHHHHHHHhccCCCCCceEEEEecccc-------------------------------------------
Q psy7952 279 K----DSYAHVKEFIEKCLGKDNKANNCGIIYCRTRE------------------------------------------- 311 (444)
Q Consensus 279 ~----~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~------------------------------------------- 311 (444)
. .-...+.+.+.+.+. .++++|||+|.+.
T Consensus 345 ~~~~~~ls~~l~~~i~~~l~----~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~ 420 (679)
T PRK05580 345 GENGSFLSPPLLEAIKQRLE----RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPI 420 (679)
T ss_pred hcccCCCCHHHHHHHHHHHH----cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCC
Confidence 0 011233344444332 4678888877532
Q ss_pred -----------------hHHHHHHHHHhh--------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCcc
Q psy7952 312 -----------------HTTDLADALRRK--------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVR 360 (444)
Q Consensus 312 -----------------~~~~l~~~L~~~--------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~ 360 (444)
.++++++.|.+. ..+.+++.+++.|++|+.+|||+|+++++|+|+|+++
T Consensus 421 ~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~ 500 (679)
T PRK05580 421 PKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVT 500 (679)
T ss_pred CCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcC
Confidence 345666666664 1246788999999999999999999999999999999
Q ss_pred EEEEeCC--CCC----------HHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhh
Q psy7952 361 FVVHWGM--PSS----------IPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT 408 (444)
Q Consensus 361 ~Vi~~~~--p~s----------~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 408 (444)
+|+.++. +.+ ...|.|++||+||.+.+|.+++.....+...++.+...
T Consensus 501 lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~ 560 (679)
T PRK05580 501 LVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQ 560 (679)
T ss_pred EEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhC
Confidence 9865543 322 36789999999999999999987766555555555443
No 83
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=4.6e-28 Score=255.26 Aligned_cols=294 Identities=18% Similarity=0.151 Sum_probs=183.0
Q ss_pred HHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchh----hhhcccCccchHhhh
Q psy7952 55 KKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPIL----SSFYLRFRDDKTSIV 130 (444)
Q Consensus 55 ~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~----~L~~~~q~~~~~~~l 130 (444)
.+.+..+..+ +.++++|+||||||.. +|.++... ..+...+|++.-|.+ +|+ .+..+.+
T Consensus 80 ~~Il~ai~~~-~VviI~GeTGSGKTTq----------lPq~lle~-g~g~~g~I~~TQPRRlAArsLA-----~RVA~El 142 (1294)
T PRK11131 80 QDILEAIRDH-QVVIVAGETGSGKTTQ----------LPKICLEL-GRGVKGLIGHTQPRRLAARTVA-----NRIAEEL 142 (1294)
T ss_pred HHHHHHHHhC-CeEEEECCCCCCHHHH----------HHHHHHHc-CCCCCCceeeCCCcHHHHHHHH-----HHHHHHH
Confidence 3445555555 7789999999999965 56411111 112212334445754 566 2333333
Q ss_pred --cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccc-cccc
Q psy7952 131 --TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHC-VSEW 207 (444)
Q Consensus 131 --~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~-~~~~ 207 (444)
..| -.+..-...... ...+++|+|+||++|. ..+ .....+.++++|||||+|. ..+.
T Consensus 143 ~~~lG---~~VGY~vrf~~~------------~s~~t~I~v~TpG~LL----~~l-~~d~~Ls~~~~IIIDEAHERsLn~ 202 (1294)
T PRK11131 143 ETELG---GCVGYKVRFNDQ------------VSDNTMVKLMTDGILL----AEI-QQDRLLMQYDTIIIDEAHERSLNI 202 (1294)
T ss_pred hhhhc---ceeceeecCccc------------cCCCCCEEEEChHHHH----HHH-hcCCccccCcEEEecCcccccccc
Confidence 122 111111110000 1346899999999985 222 2334478899999999994 5553
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccc-----hhhH
Q psy7952 208 GHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLL-----KDSY 282 (444)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 282 (444)
+ |. +..+..++...+ +.++|+||||++.. .+.++++ ..++ +.......+ +...+...... .+..
T Consensus 203 D--fL--Lg~Lk~lL~~rp-dlKvILmSATid~e---~fs~~F~-~apv-I~V~Gr~~p-Vei~y~p~~~~~~~~~~d~l 271 (1294)
T PRK11131 203 D--FI--LGYLKELLPRRP-DLKVIITSATIDPE---RFSRHFN-NAPI-IEVSGRTYP-VEVRYRPIVEEADDTERDQL 271 (1294)
T ss_pred c--hH--HHHHHHhhhcCC-CceEEEeeCCCCHH---HHHHHcC-CCCE-EEEcCcccc-ceEEEeecccccchhhHHHH
Confidence 3 33 223444443333 48999999999643 4455543 3343 333222211 22222221111 1122
Q ss_pred HHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-------------cCHHHHHHHHHHHhcCCccEEEEcCc
Q psy7952 283 AHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-------------VNKHERSRVQESFMRGEINVITATIS 349 (444)
Q Consensus 283 ~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-------------~~~~~r~~~~~~f~~g~~~vLvaT~~ 349 (444)
..+...+..+. ....+.+|||+++..+++.+++.|.+. ++..+|..+++. .|..+|||||++
T Consensus 272 ~~ll~~V~~l~---~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNI 346 (1294)
T PRK11131 272 QAIFDAVDELG---REGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNV 346 (1294)
T ss_pred HHHHHHHHHHh---cCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccH
Confidence 22223333222 224678999999999999999999864 677888888875 578899999999
Q ss_pred cccccccCCccEEEEeCC------------------CCCHHHHHHHhccCCCCCCceeEEEEecccchhhH
Q psy7952 350 FGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSL 402 (444)
Q Consensus 350 ~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~ 402 (444)
+++|||||++++||++|. |.|..+|.||+||+||. .+|.|+.+++.++...+
T Consensus 347 AEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~ 416 (1294)
T PRK11131 347 AETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSR 416 (1294)
T ss_pred HhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhh
Confidence 999999999999999873 34678999999999999 78999999998776544
No 84
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=2.4e-27 Score=234.94 Aligned_cols=294 Identities=17% Similarity=0.166 Sum_probs=187.6
Q ss_pred EEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCC
Q psy7952 69 FVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQ 146 (444)
Q Consensus 69 ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~ 146 (444)
++++|||+|||.+ |...+ .+.+..++ ++||++|+.+|+ .|+.+.+ .++ .++..++++.
T Consensus 1 LL~g~TGsGKT~v--------~l~~i-~~~l~~g~---~vLvlvP~i~L~-----~Q~~~~l~~~f~---~~v~vlhs~~ 60 (505)
T TIGR00595 1 LLFGVTGSGKTEV--------YLQAI-EKVLALGK---SVLVLVPEIALT-----PQMIQRFKYRFG---SQVAVLHSGL 60 (505)
T ss_pred CccCCCCCCHHHH--------HHHHH-HHHHHcCC---eEEEEeCcHHHH-----HHHHHHHHHHhC---CcEEEEECCC
Confidence 4789999999999 43221 22233333 459999999999 7788888 456 7788999998
Q ss_pred ChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHH--HHHHHHHHh
Q psy7952 147 TKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTY--RRLGELRQF 224 (444)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~--~~l~~~~~~ 224 (444)
+..++...+..+. .+..+|+|||+..+. ..+.++++|||||.|...-++... +.| ..+..++..
T Consensus 61 ~~~er~~~~~~~~--~g~~~IVVGTrsalf-----------~p~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~ 126 (505)
T TIGR00595 61 SDSEKLQAWRKVK--NGEILVVIGTRSALF-----------LPFKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAK 126 (505)
T ss_pred CHHHHHHHHHHHH--cCCCCEEECChHHHc-----------CcccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHH
Confidence 8777766665553 467899999976542 246789999999999976433211 112 223333333
Q ss_pred hCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec-----CCCCCCceEEEEEcccc-hhhHHHHHHHHHHHhccCCC
Q psy7952 225 TGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT-----STFRSNLFYDVIFDDLL-KDSYAHVKEFIEKCLGKDNK 298 (444)
Q Consensus 225 ~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~ 298 (444)
.. +.++|++||||+......+.. ..+..... ....+.+...-...... ..-...+.+.+.+.+.
T Consensus 127 ~~-~~~vil~SATPsles~~~~~~-----g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~---- 196 (505)
T TIGR00595 127 KF-NCPVVLGSATPSLESYHNAKQ-----KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA---- 196 (505)
T ss_pred hc-CCCEEEEeCCCCHHHHHHHhc-----CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH----
Confidence 33 489999999987655443321 11111111 11112222111111100 0111234444444433
Q ss_pred CCceEEEEecccch------------------------------------------------------------HHHHHH
Q psy7952 299 ANNCGIIYCRTREH------------------------------------------------------------TTDLAD 318 (444)
Q Consensus 299 ~~~~~iVf~~s~~~------------------------------------------------------------~~~l~~ 318 (444)
.++++|||+|++.. ++++.+
T Consensus 197 ~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e 276 (505)
T TIGR00595 197 AGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEE 276 (505)
T ss_pred cCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHH
Confidence 47789999776543 466777
Q ss_pred HHHhh------------cC--HHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCC------------CHH
Q psy7952 319 ALRRK------------VN--KHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS------------SIP 372 (444)
Q Consensus 319 ~L~~~------------~~--~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~------------s~~ 372 (444)
.|.+. +. ......+++.|++|+.+|||+|++++.|+|+|++++|+..+... ...
T Consensus 277 ~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ 356 (505)
T TIGR00595 277 ELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQ 356 (505)
T ss_pred HHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHH
Confidence 77665 12 23347899999999999999999999999999999886444321 246
Q ss_pred HHHHHhccCCCCCCceeEEEEecccchhhHHHHH
Q psy7952 373 AYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 406 (444)
Q Consensus 373 ~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 406 (444)
.|+|++||+||.+..|.+++.....+...++.+.
T Consensus 357 ll~q~~GRagR~~~~g~viiqt~~p~~~~~~~~~ 390 (505)
T TIGR00595 357 LLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQAAL 390 (505)
T ss_pred HHHHHHhccCCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 7899999999999999988766444444444443
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=5.5e-27 Score=242.39 Aligned_cols=306 Identities=15% Similarity=0.122 Sum_probs=183.0
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhh
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
|+++|..+... ..++..+++.+|||+|||.+|+.++. .+...+...+++|..||++++ .+.+++
T Consensus 287 p~p~Q~~~~~~-~~~pgl~ileApTGsGKTEAAL~~A~----------~l~~~~~~~gi~~aLPT~Ata-----n~m~~R 350 (878)
T PRK09694 287 PRQLQTLVDAL-PLQPGLTIIEAPTGSGKTEAALAYAW----------RLIDQGLADSIIFALPTQATA-----NAMLSR 350 (878)
T ss_pred ChHHHHHHHhh-ccCCCeEEEEeCCCCCHHHHHHHHHH----------HHHHhCCCCeEEEECcHHHHH-----HHHHHH
Confidence 56899977543 23336799999999999999654322 233344445789999999999 666666
Q ss_pred h----cCCCCceeEEEEeCCCChhhH---------------------HHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 130 V----TGRSDLYQLELIVSGQTKTEN---------------------KAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 130 l----~~~~~~i~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
+ ...++..++...+|....... ..++.+.+.-.--.+|+|||++++....+.
T Consensus 351 l~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~--- 427 (878)
T PRK09694 351 LEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLP--- 427 (878)
T ss_pred HHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHc---
Confidence 5 112223467777776542211 011111000011268999999988632111
Q ss_pred HHHHhhCC----ccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCC-----
Q psy7952 185 QHLVRYNK----LAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKP----- 255 (444)
Q Consensus 185 ~~~~~~~~----~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~----- 255 (444)
........ -++|||||+|.+..+ +...+..+.+.+.. ...++|+||||++....+.+.+.++...+
T Consensus 428 ~kh~~lR~~~La~svvIiDEVHAyD~y---m~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~ 502 (878)
T PRK09694 428 VKHRFIRGFGLGRSVLIVDEVHAYDAY---MYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSS 502 (878)
T ss_pred cchHHHHHHhhccCeEEEechhhCCHH---HHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhcccccccccc
Confidence 10111111 258999999997432 23333333333333 23679999999999887776654432100
Q ss_pred -eEEE--ec---------CCC----CCCceEEEEEcccc-hhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHH
Q psy7952 256 -YKVF--KT---------STF----RSNLFYDVIFDDLL-KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLAD 318 (444)
Q Consensus 256 -~~~~--~~---------~~~----~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~ 318 (444)
+-.. .. ... .......+...... ......+.+.+.+.+ ..+++++|||||++.|+++++
T Consensus 503 ~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~----~~g~~vLVf~NTV~~Aq~ly~ 578 (878)
T PRK09694 503 AYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA----NAGAQVCLICNLVDDAQKLYQ 578 (878)
T ss_pred ccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH----hcCCEEEEEECCHHHHHHHHH
Confidence 0000 00 000 00011111111000 011122233333322 157899999999999999999
Q ss_pred HHHhh-------------cCHHHH----HHHHHHH-hcCC---ccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHH
Q psy7952 319 ALRRK-------------VNKHER----SRVQESF-MRGE---INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE 377 (444)
Q Consensus 319 ~L~~~-------------~~~~~r----~~~~~~f-~~g~---~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr 377 (444)
.|++. +...+| ..+++.| ++|+ .+|||||+++++|+|+ +++++|....| ++.++||
T Consensus 579 ~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQR 655 (878)
T PRK09694 579 RLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQR 655 (878)
T ss_pred HHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHH
Confidence 99864 556677 4567778 5665 4799999999999999 47999987777 7899999
Q ss_pred hccCCCCCC
Q psy7952 378 SGRAGRDGL 386 (444)
Q Consensus 378 ~GR~~R~g~ 386 (444)
+||++|.+.
T Consensus 656 aGR~~R~~~ 664 (878)
T PRK09694 656 LGRLHRHHR 664 (878)
T ss_pred HhccCCCCC
Confidence 999999875
No 86
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.95 E-value=7.8e-27 Score=242.74 Aligned_cols=329 Identities=15% Similarity=0.089 Sum_probs=200.3
Q ss_pred chHHHHHHHHHHcc-CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhh
Q psy7952 51 CELQKKAIRHILLR-THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 51 t~~Q~~~~~~~~~~-~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
-|||..++..++.. ..++++.-..|.|||..|.+. +..+...+...++||+||. .|. .+-...
T Consensus 154 ~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAgli----------l~~l~~~g~~~rvLIVvP~-sL~-----~QW~~E 217 (956)
T PRK04914 154 IPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMI----------IHQQLLTGRAERVLILVPE-TLQ-----HQWLVE 217 (956)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHH----------HHHHHHcCCCCcEEEEcCH-HHH-----HHHHHH
Confidence 47999999887654 257999999999999885432 2224445555688999998 566 233333
Q ss_pred h--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccccc
Q psy7952 130 V--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEW 207 (444)
Q Consensus 130 l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~ 207 (444)
+ .++ +....+.++....... .-.......+++|+|.+.+.... -.........+++||+||||++...
T Consensus 218 l~~kF~---l~~~i~~~~~~~~~~~----~~~~pf~~~~~vI~S~~~l~~~~---~~~~~l~~~~wdlvIvDEAH~lk~~ 287 (956)
T PRK04914 218 MLRRFN---LRFSLFDEERYAEAQH----DADNPFETEQLVICSLDFLRRNK---QRLEQALAAEWDLLVVDEAHHLVWS 287 (956)
T ss_pred HHHHhC---CCeEEEcCcchhhhcc----cccCccccCcEEEEEHHHhhhCH---HHHHHHhhcCCCEEEEechhhhccC
Confidence 3 344 4555554433211000 00011235689999988875311 0111222347999999999998531
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCe-------------------------------
Q psy7952 208 GHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPY------------------------------- 256 (444)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~------------------------------- 256 (444)
...-...|..+..+... ...++++||||.......+...+.+-+|.
T Consensus 288 ~~~~s~~y~~v~~La~~---~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~ 364 (956)
T PRK04914 288 EEAPSREYQVVEQLAEV---IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKL 364 (956)
T ss_pred CCCcCHHHHHHHHHhhc---cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcC
Confidence 11112235555554332 24689999998753322222222111100
Q ss_pred --------------------------------------------------EEEecC----CCCCCceEEEEEcccchh--
Q psy7952 257 --------------------------------------------------KVFKTS----TFRSNLFYDVIFDDLLKD-- 280 (444)
Q Consensus 257 --------------------------------------------------~~~~~~----~~~~~~~~~~~~~~~~~~-- 280 (444)
..++.. ..-|.-.+.....+....
T Consensus 365 ~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~ 444 (956)
T PRK04914 365 SDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQ 444 (956)
T ss_pred CHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHH
Confidence 000000 000000011110100000
Q ss_pred -------------------------------hHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------
Q psy7952 281 -------------------------------SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------ 323 (444)
Q Consensus 281 -------------------------------~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------ 323 (444)
......+.+.+++... .+.|+||||+++.++..+++.|...
T Consensus 445 ~~~~~~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~ 522 (956)
T PRK04914 445 TAIKVSLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAA 522 (956)
T ss_pred HHHHHhHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEE
Confidence 0001122333333333 4789999999999999999999543
Q ss_pred -----cCHHHHHHHHHHHhcC--CccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecc
Q psy7952 324 -----VNKHERSRVQESFMRG--EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 396 (444)
Q Consensus 324 -----~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 396 (444)
++..+|...++.|+++ ..+|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.+++..
T Consensus 523 ~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 523 VFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred EEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 8999999999999974 599999999999999999999999999999999999999999999999887666542
Q ss_pred c---chhhHHHHHhhcc
Q psy7952 397 H---SKKSLEYVIKTDT 410 (444)
Q Consensus 397 ~---~~~~~~~~~~~~~ 410 (444)
. ..+.+..+...++
T Consensus 603 ~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 603 LEGTAQERLFRWYHEGL 619 (956)
T ss_pred CCCCHHHHHHHHHhhhc
Confidence 2 2344444444433
No 87
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=6.9e-27 Score=247.30 Aligned_cols=297 Identities=17% Similarity=0.176 Sum_probs=188.0
Q ss_pred HHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh--cCC
Q psy7952 56 KAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV--TGR 133 (444)
Q Consensus 56 ~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l--~~~ 133 (444)
+.+..+..+ +.++|+|+||||||.. +|.++... ..+...+|++.-|.+-.+ .....++ ..+
T Consensus 74 ~Il~~l~~~-~vvii~g~TGSGKTTq----------lPq~lle~-~~~~~~~I~~tQPRRlAA-----~svA~RvA~elg 136 (1283)
T TIGR01967 74 DIAEAIAEN-QVVIIAGETGSGKTTQ----------LPKICLEL-GRGSHGLIGHTQPRRLAA-----RTVAQRIAEELG 136 (1283)
T ss_pred HHHHHHHhC-ceEEEeCCCCCCcHHH----------HHHHHHHc-CCCCCceEecCCccHHHH-----HHHHHHHHHHhC
Confidence 445555444 7889999999999965 45411111 112223456666888766 4555555 333
Q ss_pred CCceeEEEEeCCC-ChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccc-ccccCCCc
Q psy7952 134 SDLYQLELIVSGQ-TKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHC-VSEWGHDF 211 (444)
Q Consensus 134 ~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~-~~~~~~~~ 211 (444)
..+....|.. ..... ...+..|.++|++.|.. . +.....+.++++|||||+|. ..+.+ +
T Consensus 137 ---~~lG~~VGY~vR~~~~---------~s~~T~I~~~TdGiLLr----~-l~~d~~L~~~~~IIIDEaHERsL~~D--~ 197 (1283)
T TIGR01967 137 ---TPLGEKVGYKVRFHDQ---------VSSNTLVKLMTDGILLA----E-TQQDRFLSRYDTIIIDEAHERSLNID--F 197 (1283)
T ss_pred ---CCcceEEeeEEcCCcc---------cCCCceeeeccccHHHH----H-hhhCcccccCcEEEEcCcchhhccch--h
Confidence 2222222211 00000 13467899999999852 2 22333577899999999994 54432 2
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCC-CCCceEEEEEccc---chhhHHHHHH
Q psy7952 212 RPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF-RSNLFYDVIFDDL---LKDSYAHVKE 287 (444)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~ 287 (444)
. +..+..++...+ +.++|+||||+.. ..+.++++ ..++ +...... ...+.|....... .....+.+..
T Consensus 198 L--L~lLk~il~~rp-dLKlIlmSATld~---~~fa~~F~-~apv-I~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~ 269 (1283)
T TIGR01967 198 L--LGYLKQLLPRRP-DLKIIITSATIDP---ERFSRHFN-NAPI-IEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILD 269 (1283)
T ss_pred H--HHHHHHHHhhCC-CCeEEEEeCCcCH---HHHHHHhc-CCCE-EEECCCcccceeEEecccccccchhhhHHHHHHH
Confidence 2 223444444444 4889999999964 34555553 2343 3222221 2222222111110 0122233444
Q ss_pred HHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-------------cCHHHHHHHHHHHhcCCccEEEEcCcccccc
Q psy7952 288 FIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-------------VNKHERSRVQESFMRGEINVITATISFGMGI 354 (444)
Q Consensus 288 ~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 354 (444)
.+..+... ..+.+|||+++..+++.+++.|.+. ++.++|..+++.+ +..+||+||+++++|+
T Consensus 270 ~I~~l~~~---~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSL 344 (1283)
T TIGR01967 270 AVDELFAE---GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSL 344 (1283)
T ss_pred HHHHHHhh---CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhcc
Confidence 45444332 4678999999999999999999864 6788888876543 3479999999999999
Q ss_pred ccCCccEEEEeCCC------------------CCHHHHHHHhccCCCCCCceeEEEEecccchhhH
Q psy7952 355 DRQNVRFVVHWGMP------------------SSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSL 402 (444)
Q Consensus 355 di~~~~~Vi~~~~p------------------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~ 402 (444)
|||++++||++|.+ .|..+|.||.||+||.| +|.|+.+++.++...+
T Consensus 345 TIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~ 409 (1283)
T TIGR01967 345 TVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSR 409 (1283)
T ss_pred ccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhh
Confidence 99999999999853 36789999999999996 9999999998776554
No 88
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=2e-26 Score=204.75 Aligned_cols=308 Identities=18% Similarity=0.119 Sum_probs=202.5
Q ss_pred CCcccCchHHHHHHHHHHc---cCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhccc
Q psy7952 45 GFDSFKCELQKKAIRHILL---RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLR 121 (444)
Q Consensus 45 g~~~~~t~~Q~~~~~~~~~---~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~ 121 (444)
++..-.|+.|+.+-+.+.+ ..++.+++|.||+|||.. ++..+...+..++.. .+.+|....+
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM---------if~~i~~al~~G~~v---ciASPRvDVc--- 157 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM---------IFQGIEQALNQGGRV---CIASPRVDVC--- 157 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh---------hHHHHHHHHhcCCeE---EEecCcccch---
Confidence 4444357899998877765 238999999999999988 344423334444455 8889999888
Q ss_pred CccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecc
Q psy7952 122 FRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEA 201 (444)
Q Consensus 122 q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~ 201 (444)
-+...++...+.......++|+.... -..+++|+|--++. + ....|+++||||+
T Consensus 158 --lEl~~Rlk~aF~~~~I~~Lyg~S~~~-------------fr~plvVaTtHQLl--------r---Fk~aFD~liIDEV 211 (441)
T COG4098 158 --LELYPRLKQAFSNCDIDLLYGDSDSY-------------FRAPLVVATTHQLL--------R---FKQAFDLLIIDEV 211 (441)
T ss_pred --HHHHHHHHHhhccCCeeeEecCCchh-------------ccccEEEEehHHHH--------H---HHhhccEEEEecc
Confidence 78888884444447788888887653 24678888844432 1 1235899999999
Q ss_pred ccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCC--CCCceEEEEEcccch
Q psy7952 202 HCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF--RSNLFYDVIFDDLLK 279 (444)
Q Consensus 202 H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 279 (444)
|.+.-.. -...+.++ .+....+...|.+|||++....+.+...- .....+...-.. .|-..+.....-...
T Consensus 212 DAFP~~~--d~~L~~Av---~~ark~~g~~IylTATp~k~l~r~~~~g~--~~~~klp~RfH~~pLpvPkf~w~~~~~k~ 284 (441)
T COG4098 212 DAFPFSD--DQSLQYAV---KKARKKEGATIYLTATPTKKLERKILKGN--LRILKLPARFHGKPLPVPKFVWIGNWNKK 284 (441)
T ss_pred ccccccC--CHHHHHHH---HHhhcccCceEEEecCChHHHHHHhhhCC--eeEeecchhhcCCCCCCCceEEeccHHHH
Confidence 9974211 11112222 23344456689999999988777654321 111111111111 111122222211111
Q ss_pred hhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCc
Q psy7952 280 DSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATIS 349 (444)
Q Consensus 280 ~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~ 349 (444)
-....+.-.+...+++....+.+++||+++.+..++++..|... .....|.+..+.|++|+..+|++|.+
T Consensus 285 l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTTI 364 (441)
T COG4098 285 LQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTTI 364 (441)
T ss_pred hhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEeeh
Confidence 11122333455566666667899999999999999999999766 44567899999999999999999999
Q ss_pred cccccccCCccEEEEeCC--CCCHHHHHHHhccCCCCCC--ceeEEEEecccchh
Q psy7952 350 FGMGIDRQNVRFVVHWGM--PSSIPAYYQESGRAGRDGL--QSYCRIYHSEHSKK 400 (444)
Q Consensus 350 ~~~Gidi~~~~~Vi~~~~--p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~~~ 400 (444)
+++|+.+|++++.|.-.- -.+...++|..||+||.-. .|.+..|.......
T Consensus 365 LERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 365 LERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred hhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 999999999998664332 2578899999999999743 46655554444433
No 89
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=3.8e-27 Score=250.30 Aligned_cols=302 Identities=17% Similarity=0.137 Sum_probs=179.0
Q ss_pred chHHHHHHHHHH----ccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccch
Q psy7952 51 CELQKKAIRHIL----LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDK 126 (444)
Q Consensus 51 t~~Q~~~~~~~~----~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~ 126 (444)
.+||.+|+..+. +|.+++++++|||||||++|+. . +..+...+..+||||++|+.+|+ .|.
T Consensus 415 R~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~---------l-i~~L~~~~~~~rVLfLvDR~~L~-----~Qa 479 (1123)
T PRK11448 415 RYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA---------L-MYRLLKAKRFRRILFLVDRSALG-----EQA 479 (1123)
T ss_pred CHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH---------H-HHHHHhcCccCeEEEEecHHHHH-----HHH
Confidence 379999998776 3547899999999999988321 1 22244444556889999999999 566
Q ss_pred Hhhh-cCCCCce-eEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH-HHHhhCCccEEEEecccc
Q psy7952 127 TSIV-TGRSDLY-QLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ-HLVRYNKLAYIVVDEAHC 203 (444)
Q Consensus 127 ~~~l-~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~-~~~~~~~~~~iViDE~H~ 203 (444)
...+ ..+.... ....+.+. .. +.+.. .....+|+|+|++++.+..+..... .......+++||+||||+
T Consensus 480 ~~~F~~~~~~~~~~~~~i~~i---~~----L~~~~-~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHR 551 (1123)
T PRK11448 480 EDAFKDTKIEGDQTFASIYDI---KG----LEDKF-PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHR 551 (1123)
T ss_pred HHHHHhcccccccchhhhhch---hh----hhhhc-ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCC
Confidence 6666 3331101 11001110 00 00000 1245789999999875321110000 012346789999999999
Q ss_pred cccc------C-CCcH---HHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec------CCC---
Q psy7952 204 VSEW------G-HDFR---PTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT------STF--- 264 (444)
Q Consensus 204 ~~~~------~-~~~~---~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~------~~~--- 264 (444)
-... + ..++ ..+....+++..+. ...|+|||||..... ..++. ++....- ...
T Consensus 552 s~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~----~~FG~--pv~~Ysl~eAI~DG~Lv~~ 623 (1123)
T PRK11448 552 GYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTT----EIFGE--PVYTYSYREAVIDGYLIDH 623 (1123)
T ss_pred CCccccccccchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchh----HHhCC--eeEEeeHHHHHhcCCcccC
Confidence 5310 0 0011 11233334444442 568999999976443 23331 1110000 000
Q ss_pred CCCceEEEEE-------------------------cccch----------------hhHHHHHHHHHHHhccCCCCCceE
Q psy7952 265 RSNLFYDVIF-------------------------DDLLK----------------DSYAHVKEFIEKCLGKDNKANNCG 303 (444)
Q Consensus 265 ~~~~~~~~~~-------------------------~~~~~----------------~~~~~~~~~l~~~l~~~~~~~~~~ 303 (444)
.+++.+.... ..... .....+.+.+.+.+... ..+++
T Consensus 624 ~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~--~~~Kt 701 (1123)
T PRK11448 624 EPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPT--GEGKT 701 (1123)
T ss_pred cCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhcc--CCCcE
Confidence 0111111000 00000 00001112222223222 24799
Q ss_pred EEEecccchHHHHHHHHHhh-----------------cCHHHHHHHHHHHhcCCc-cEEEEcCccccccccCCccEEEEe
Q psy7952 304 IIYCRTREHTTDLADALRRK-----------------VNKHERSRVQESFMRGEI-NVITATISFGMGIDRQNVRFVVHW 365 (444)
Q Consensus 304 iVf~~s~~~~~~l~~~L~~~-----------------~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gidi~~~~~Vi~~ 365 (444)
||||.++++|+.+++.|.+. .+..++..++++|+++.. +|+|+++++.+|+|+|.+++||++
T Consensus 702 iIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~ 781 (1123)
T PRK11448 702 LIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDKPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFL 781 (1123)
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccchHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEe
Confidence 99999999999999887653 122367889999999876 689999999999999999999999
Q ss_pred CCCCCHHHHHHHhccCCCCC
Q psy7952 366 GMPSSIPAYYQESGRAGRDG 385 (444)
Q Consensus 366 ~~p~s~~~~~Qr~GR~~R~g 385 (444)
.++.|...|.||+||+.|.-
T Consensus 782 rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 782 RRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999963
No 90
>KOG0947|consensus
Probab=99.95 E-value=2.2e-26 Score=227.66 Aligned_cols=315 Identities=22% Similarity=0.242 Sum_probs=211.7
Q ss_pred HhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccC
Q psy7952 43 LFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRF 122 (444)
Q Consensus 43 ~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q 122 (444)
.|+|+. ..+|++|+-++.+| .++++.|+|.+|||.+|..+ +.. ...+ ..|.++.+|.++|.
T Consensus 293 ~~pFel--D~FQk~Ai~~lerg-~SVFVAAHTSAGKTvVAEYA------ial----aq~h--~TR~iYTSPIKALS---- 353 (1248)
T KOG0947|consen 293 IYPFEL--DTFQKEAIYHLERG-DSVFVAAHTSAGKTVVAEYA------IAL----AQKH--MTRTIYTSPIKALS---- 353 (1248)
T ss_pred hCCCCc--cHHHHHHHHHHHcC-CeEEEEecCCCCcchHHHHH------HHH----HHhh--ccceEecchhhhhc----
Confidence 367774 46999999999999 99999999999999997643 222 1111 12459999999999
Q ss_pred ccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccc
Q psy7952 123 RDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAH 202 (444)
Q Consensus 123 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H 202 (444)
.|.++.|+..+++ +..++|+.... +.+.++|+|-|.|. .+++++.--..++..||+||+|
T Consensus 354 -NQKfRDFk~tF~D--vgLlTGDvqin-------------PeAsCLIMTTEILR----sMLYrgadliRDvE~VIFDEVH 413 (1248)
T KOG0947|consen 354 -NQKFRDFKETFGD--VGLLTGDVQIN-------------PEASCLIMTTEILR----SMLYRGADLIRDVEFVIFDEVH 413 (1248)
T ss_pred -cchHHHHHHhccc--cceeecceeeC-------------CCcceEeehHHHHH----HHHhcccchhhccceEEEeeee
Confidence 7888888333222 33888887653 67889999988875 4445555556789999999999
Q ss_pred cccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCC-CCCC-ceEEEEEcccch-
Q psy7952 203 CVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST-FRSN-LFYDVIFDDLLK- 279 (444)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~- 279 (444)
.+.+..++ ..|..+. =++|..+++|++|||.++.. .+..|+|-.+.-.+...++ .||. ..+.........
T Consensus 414 YiND~eRG--vVWEEVi---IMlP~HV~~IlLSATVPN~~--EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~k 486 (1248)
T KOG0947|consen 414 YINDVERG--VVWEEVI---IMLPRHVNFILLSATVPNTL--EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFK 486 (1248)
T ss_pred eccccccc--ccceeee---eeccccceEEEEeccCCChH--HHHHHhhhccCceEEEEecCCCccceEEEEEeccceeh
Confidence 99774321 1233322 25677899999999998764 4577777544333333333 2322 111111100000
Q ss_pred --------------hhH---------------------------------------------H----HHHHHHHHHhccC
Q psy7952 280 --------------DSY---------------------------------------------A----HVKEFIEKCLGKD 296 (444)
Q Consensus 280 --------------~~~---------------------------------------------~----~~~~~l~~~l~~~ 296 (444)
+.. . ...+++..+ ...
T Consensus 487 iidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L-~k~ 565 (1248)
T KOG0947|consen 487 IIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHL-RKK 565 (1248)
T ss_pred hhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHH-hhc
Confidence 000 0 011111111 111
Q ss_pred CCCCceEEEEecccchHHHHHHHHHhh-------------------------------------------------cCHH
Q psy7952 297 NKANNCGIIYCRTREHTTDLADALRRK-------------------------------------------------VNKH 327 (444)
Q Consensus 297 ~~~~~~~iVf~~s~~~~~~l~~~L~~~-------------------------------------------------~~~~ 327 (444)
.--++||||.|++.|++-++.|... .-+-
T Consensus 566 --~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPi 643 (1248)
T KOG0947|consen 566 --NLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPI 643 (1248)
T ss_pred --ccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHH
Confidence 2347999999999999999999766 4455
Q ss_pred HHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCC---------CCHHHHHHHhccCCCCCC--ceeEEEEecc
Q psy7952 328 ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMP---------SSIPAYYQESGRAGRDGL--QSYCRIYHSE 396 (444)
Q Consensus 328 ~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p---------~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~ 396 (444)
-+.-++-.|..|-++||+||.+++.|+|+|. ++||+...- -++-+|.||+|||||.|- .|+++++...
T Consensus 644 vKE~VE~LFqrGlVKVLFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 644 VKEVVELLFQRGLVKVLFATETFAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred HHHHHHHHHhcCceEEEeehhhhhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 6677778899999999999999999999995 444433332 267899999999999985 4776666654
Q ss_pred c--chhhHHHHHh
Q psy7952 397 H--SKKSLEYVIK 407 (444)
Q Consensus 397 ~--~~~~~~~~~~ 407 (444)
. +...++.++-
T Consensus 723 ~vp~~a~l~~li~ 735 (1248)
T KOG0947|consen 723 SVPSAATLKRLIM 735 (1248)
T ss_pred CCCCHHHHhhHhc
Confidence 3 4555666654
No 91
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=8.8e-26 Score=231.48 Aligned_cols=321 Identities=20% Similarity=0.222 Sum_probs=211.8
Q ss_pred HhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccC
Q psy7952 43 LFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRF 122 (444)
Q Consensus 43 ~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q 122 (444)
.+||+. . ++|++++..+.+| ++|+++||||+|||.+|..+ +.. .+.++.+ +++..|.++|.
T Consensus 115 ~~~F~L-D-~fQ~~a~~~Ler~-esVlV~ApTssGKTvVaeyA------i~~---al~~~qr---viYTsPIKALs---- 175 (1041)
T COG4581 115 EYPFEL-D-PFQQEAIAILERG-ESVLVCAPTSSGKTVVAEYA------IAL---ALRDGQR---VIYTSPIKALS---- 175 (1041)
T ss_pred hCCCCc-C-HHHHHHHHHHhCC-CcEEEEccCCCCcchHHHHH------HHH---HHHcCCc---eEeccchhhhh----
Confidence 378885 4 7999999999999 99999999999999996532 222 1222233 59999999999
Q ss_pred ccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEec
Q psy7952 123 RDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDE 200 (444)
Q Consensus 123 ~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE 200 (444)
.|....+ .++.-.--+..++|+...+ +++.++|+|-|.|. .+++........+..||+||
T Consensus 176 -NQKyrdl~~~fgdv~~~vGL~TGDv~IN-------------~~A~clvMTTEILR----nMlyrg~~~~~~i~~ViFDE 237 (1041)
T COG4581 176 -NQKYRDLLAKFGDVADMVGLMTGDVSIN-------------PDAPCLVMTTEILR----NMLYRGSESLRDIEWVVFDE 237 (1041)
T ss_pred -hhHHHHHHHHhhhhhhhccceecceeeC-------------CCCceEEeeHHHHH----HHhccCcccccccceEEEEe
Confidence 7788887 3330011247778887764 68889999988764 33344445567899999999
Q ss_pred cccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcC--CCCeEEEecCCCCCC-ceEEEEEccc
Q psy7952 201 AHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKF--NKPYKVFKTSTFRSN-LFYDVIFDDL 277 (444)
Q Consensus 201 ~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~~ 277 (444)
+|.+.+...+ ..+..+.. .+|+..++|+||||.++.. .+..|+.. ..+..+.... .||. ..+.+.....
T Consensus 238 vHyi~D~eRG--~VWEE~Ii---~lP~~v~~v~LSATv~N~~--EF~~Wi~~~~~~~~~vv~t~-~RpvPL~~~~~~~~~ 309 (1041)
T COG4581 238 VHYIGDRERG--VVWEEVII---LLPDHVRFVFLSATVPNAE--EFAEWIQRVHSQPIHVVSTE-HRPVPLEHFVYVGKG 309 (1041)
T ss_pred eeeccccccc--hhHHHHHH---hcCCCCcEEEEeCCCCCHH--HHHHHHHhccCCCeEEEeec-CCCCCeEEEEecCCc
Confidence 9999875432 22333322 4677789999999998754 45666652 3343333333 3332 2222111100
Q ss_pred ----chhhH-------HHHHHH--------------------------------------HHHHhccCCCCCceEEEEec
Q psy7952 278 ----LKDSY-------AHVKEF--------------------------------------IEKCLGKDNKANNCGIIYCR 308 (444)
Q Consensus 278 ----~~~~~-------~~~~~~--------------------------------------l~~~l~~~~~~~~~~iVf~~ 308 (444)
.+... ...... +...+.. ...-++|+|+.
T Consensus 310 l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~F 387 (1041)
T COG4581 310 LFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSF 387 (1041)
T ss_pred eeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEE
Confidence 00000 000000 0011111 13568999999
Q ss_pred ccchHHHHHHHHHhh---------------------------------------------------cCHHHHHHHHHHHh
Q psy7952 309 TREHTTDLADALRRK---------------------------------------------------VNKHERSRVQESFM 337 (444)
Q Consensus 309 s~~~~~~l~~~L~~~---------------------------------------------------~~~~~r~~~~~~f~ 337 (444)
|+..|+..+..+... +-+..|..+...|.
T Consensus 388 Sr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq 467 (1041)
T COG4581 388 SRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQ 467 (1041)
T ss_pred chhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHh
Confidence 999999988877633 66778889999999
Q ss_pred cCCccEEEEcCccccccccCCccEEEEeCC---------CCCHHHHHHHhccCCCCCCc--eeEEEEec--ccchhhHHH
Q psy7952 338 RGEINVITATISFGMGIDRQNVRFVVHWGM---------PSSIPAYYQESGRAGRDGLQ--SYCRIYHS--EHSKKSLEY 404 (444)
Q Consensus 338 ~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~---------p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~--~~~~~~~~~ 404 (444)
.|-++|++||.+++.|+|+|. +.|++... +.+..+|.|+.|||||.|-+ |.+++.-. +.+......
T Consensus 468 ~GLvkvvFaTeT~s~GiNmPa-rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~ 546 (1041)
T COG4581 468 EGLVKVVFATETFAIGINMPA-RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAG 546 (1041)
T ss_pred ccceeEEeehhhhhhhcCCcc-cceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHH
Confidence 999999999999999999994 44443332 34799999999999999865 77666633 223555566
Q ss_pred HHhhccc
Q psy7952 405 VIKTDTS 411 (444)
Q Consensus 405 ~~~~~~~ 411 (444)
+......
T Consensus 547 l~~~~~~ 553 (1041)
T COG4581 547 LASGKLD 553 (1041)
T ss_pred hhcCCCc
Confidence 5544433
No 92
>KOG0950|consensus
Probab=99.93 E-value=3.2e-25 Score=220.78 Aligned_cols=328 Identities=21% Similarity=0.262 Sum_probs=219.0
Q ss_pred hCCcccCchHHHHHH--HHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhccc
Q psy7952 44 FGFDSFKCELQKKAI--RHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLR 121 (444)
Q Consensus 44 ~g~~~~~t~~Q~~~~--~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~ 121 (444)
+|...+- +||.+++ +.++.+ ++.+..+||+.|||++|.+.++.+. +..++.. +++.|..+.+
T Consensus 219 kgi~~~f-ewq~ecls~~~~~e~-~nliys~Pts~gktlvaeilml~~~--------l~~rr~~---llilp~vsiv--- 282 (1008)
T KOG0950|consen 219 KGILKLF-EWQAECLSLPRLLER-KNLIYSLPTSAGKTLVAEILMLREV--------LCRRRNV---LLILPYVSIV--- 282 (1008)
T ss_pred hhHHHHH-HHHHHHhcchhhhcc-cceEEeCCCccchHHHHHHHHHHHH--------HHHhhce---eEecceeehh---
Confidence 5777744 7999997 467766 9999999999999999877655422 3333444 9999999999
Q ss_pred CccchHhhh-----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh---hCCc
Q psy7952 122 FRDDKTSIV-----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR---YNKL 193 (444)
Q Consensus 122 q~~~~~~~l-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~---~~~~ 193 (444)
.+.+..+ ..| +.+..+.|....... ...-++.|+|.|+-. .+.+.... ...+
T Consensus 283 --~Ek~~~l~~~~~~~G---~~ve~y~g~~~p~~~----------~k~~sv~i~tiEkan-----slin~lie~g~~~~~ 342 (1008)
T KOG0950|consen 283 --QEKISALSPFSIDLG---FPVEEYAGRFPPEKR----------RKRESVAIATIEKAN-----SLINSLIEQGRLDFL 342 (1008)
T ss_pred --HHHHhhhhhhccccC---CcchhhcccCCCCCc----------ccceeeeeeehHhhH-----hHHHHHHhcCCcccc
Confidence 7888777 344 777777766554432 346689999999963 23444433 4567
Q ss_pred cEEEEeccccccccCCCcHHHHHHHH-H-HHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEE
Q psy7952 194 AYIVVDEAHCVSEWGHDFRPTYRRLG-E-LRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYD 271 (444)
Q Consensus 194 ~~iViDE~H~~~~~~~~~~~~~~~l~-~-~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (444)
++||+||.|.+.+.+.+.. +..+. + ++.......|+|+||||+++.. .+..++. ..+... ..||.....
T Consensus 343 g~vvVdElhmi~d~~rg~~--lE~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~--A~~y~t---~fRPv~L~E 413 (1008)
T KOG0950|consen 343 GMVVVDELHMIGDKGRGAI--LELLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLD--AFVYTT---RFRPVPLKE 413 (1008)
T ss_pred CcEEEeeeeeeeccccchH--HHHHHHHHHHhccccceeEeeeecccCChH--HHHHHhh--hhheec---ccCcccchh
Confidence 9999999999988664322 22221 1 1112222367999999998743 4455543 111111 111111111
Q ss_pred EEEccc--chhhHHHHHHHHH----HHhccC------------CCCCceEEEEecccchHHHHHHHHHhh----------
Q psy7952 272 VIFDDL--LKDSYAHVKEFIE----KCLGKD------------NKANNCGIIYCRTREHTTDLADALRRK---------- 323 (444)
Q Consensus 272 ~~~~~~--~~~~~~~~~~~l~----~~l~~~------------~~~~~~~iVf~~s~~~~~~l~~~L~~~---------- 323 (444)
...... .+.....+...+. ...... ..++.++||||+++..|+.++..+...
T Consensus 414 ~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~ 493 (1008)
T KOG0950|consen 414 YIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKR 493 (1008)
T ss_pred ccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhh
Confidence 111000 0000111111111 111101 114556999999999999998766544
Q ss_pred --------------------------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEe
Q psy7952 324 --------------------------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHW 365 (444)
Q Consensus 324 --------------------------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~ 365 (444)
+..++|+.+...|+.|.+.|++||+++..|+|+|.-++++-.
T Consensus 494 ~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira 573 (1008)
T KOG0950|consen 494 LGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA 573 (1008)
T ss_pred hhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC
Confidence 678999999999999999999999999999999988887743
Q ss_pred C----CCCCHHHHHHHhccCCCCCC--ceeEEEEecccchhhHHHHHhhccchhHHH
Q psy7952 366 G----MPSSIPAYYQESGRAGRDGL--QSYCRIYHSEHSKKSLEYVIKTDTSTKREQ 416 (444)
Q Consensus 366 ~----~p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (444)
- ...+..+|.||+|||||.|- .|.+++++...+.+...+++..+.+....-
T Consensus 574 P~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~ 630 (1008)
T KOG0950|consen 574 PYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPLNSC 630 (1008)
T ss_pred CccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccccccc
Confidence 2 23478899999999999975 488999999999999999988877765443
No 93
>KOG0349|consensus
Probab=99.93 E-value=1.8e-25 Score=204.01 Aligned_cols=277 Identities=16% Similarity=0.193 Sum_probs=183.0
Q ss_pred ceeEEEcchhhhhcccCccchHhhhcCC--CCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIVTGR--SDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYL 183 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~ 183 (444)
+..+|+-|+++|+ .|..++++.+.+. .+.++...+.++....++... +.++.+|+|+||.++. ..+
T Consensus 287 p~avivepsrela--Eqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~q------l~~g~~ivvGtpgRl~----~~i 354 (725)
T KOG0349|consen 287 PEAVIVEPSRELA--EQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQ------LKDGTHIVVGTPGRLL----QPI 354 (725)
T ss_pred cceeEecCcHHHH--HHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHH------hhcCceeeecCchhhh----hhh
Confidence 3589999999999 5557777777333 334555566666555444333 3578999999999985 445
Q ss_pred HHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhC------CCCcEEEEeccCCcchHHHHHH-HhcCCCCe
Q psy7952 184 LQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTG------NSIPIIALTATAEPSVKQDIIS-VLKFNKPY 256 (444)
Q Consensus 184 ~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~v~lSAT~~~~~~~~~~~-~l~~~~~~ 256 (444)
......+...+++|.||++.++..+ +... |.++....+ ...+.+.+|||+..-....+.+ .+.++.-+
T Consensus 355 s~g~~~lt~crFlvlDead~lL~qg--y~d~---I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwV 429 (725)
T KOG0349|consen 355 SKGLVTLTHCRFLVLDEADLLLGQG--YDDK---IYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWV 429 (725)
T ss_pred hccceeeeeeEEEEecchhhhhhcc--cHHH---HHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeE
Confidence 5556677788999999999998765 3333 333332222 2367899999976533222221 11111111
Q ss_pred EEEecCCCCCCceEEEE-Eccc----------------------------chhhHHHHHHHH-----HHHhccCCCCCce
Q psy7952 257 KVFKTSTFRSNLFYDVI-FDDL----------------------------LKDSYAHVKEFI-----EKCLGKDNKANNC 302 (444)
Q Consensus 257 ~~~~~~~~~~~~~~~~~-~~~~----------------------------~~~~~~~~~~~l-----~~~l~~~~~~~~~ 302 (444)
.+.-.+.........+. .... ..........++ ...+.+. .-.+
T Consensus 430 dLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h--~mdk 507 (725)
T KOG0349|consen 430 DLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH--AMDK 507 (725)
T ss_pred ecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh--ccCc
Confidence 11100000000000000 0000 000011111111 1111111 4668
Q ss_pred EEEEecccchHHHHHHHHHhh-------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCC
Q psy7952 303 GIIYCRTREHTTDLADALRRK-------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS 369 (444)
Q Consensus 303 ~iVf~~s~~~~~~l~~~L~~~-------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~ 369 (444)
.||||.++.+|+.+.+++.++ ..+.+|.+.++.|+.+..+.||||+++.+|+||..+-++|+...|.
T Consensus 508 aiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd 587 (725)
T KOG0349|consen 508 AIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPD 587 (725)
T ss_pred eEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCc
Confidence 999999999999999999988 5689999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhccCCCCCCceeEEEEecccchhh
Q psy7952 370 SIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 401 (444)
Q Consensus 370 s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 401 (444)
...+|+||+||+||..+-|.++.++.....+.
T Consensus 588 ~k~nyvhrigrvgraermglaislvat~~ekv 619 (725)
T KOG0349|consen 588 DKTNYVHRIGRVGRAERMGLAISLVATVPEKV 619 (725)
T ss_pred ccchhhhhhhccchhhhcceeEEEeeccchhe
Confidence 99999999999999988899999887554443
No 94
>KOG0948|consensus
Probab=99.93 E-value=2.5e-25 Score=215.16 Aligned_cols=315 Identities=17% Similarity=0.218 Sum_probs=210.6
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
.++|..++.-+-++ +++++.|.|.+|||.+|..++. . .+... -|||+.+|.++|. .|..+.+
T Consensus 131 DpFQ~~aI~Cidr~-eSVLVSAHTSAGKTVVAeYAIA------~---sLr~k---QRVIYTSPIKALS-----NQKYREl 192 (1041)
T KOG0948|consen 131 DPFQSTAIKCIDRG-ESVLVSAHTSAGKTVVAEYAIA------M---SLREK---QRVIYTSPIKALS-----NQKYREL 192 (1041)
T ss_pred CchHhhhhhhhcCC-ceEEEEeecCCCcchHHHHHHH------H---HHHhc---CeEEeeChhhhhc-----chhHHHH
Confidence 46999999998888 9999999999999999764322 2 12222 2569999999999 7788887
Q ss_pred -cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCC
Q psy7952 131 -TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209 (444)
Q Consensus 131 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~ 209 (444)
..- -.|...+|+.+.. +++..+|+|-|.|. .++.++..-...+.-||+||+|.|-+..+
T Consensus 193 ~~EF---~DVGLMTGDVTIn-------------P~ASCLVMTTEILR----sMLYRGSEvmrEVaWVIFDEIHYMRDkER 252 (1041)
T KOG0948|consen 193 LEEF---KDVGLMTGDVTIN-------------PDASCLVMTTEILR----SMLYRGSEVMREVAWVIFDEIHYMRDKER 252 (1041)
T ss_pred HHHh---cccceeecceeeC-------------CCCceeeeHHHHHH----HHHhccchHhheeeeEEeeeehhcccccc
Confidence 333 4578889988764 67889999988875 44555666677899999999999966332
Q ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcC--CCCeEEEecCCCCCCceEEE------------EEc
Q psy7952 210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKF--NKPYKVFKTSTFRSNLFYDV------------IFD 275 (444)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~------------~~~ 275 (444)
+.- |.. -.=.+|++.+.+++|||+++.. .+.+|+.- ..|..++-.+ .||.....+ ...
T Consensus 253 GVV--WEE---TIIllP~~vr~VFLSATiPNA~--qFAeWI~~ihkQPcHVVYTd-yRPTPLQHyifP~ggdGlylvVDe 324 (1041)
T KOG0948|consen 253 GVV--WEE---TIILLPDNVRFVFLSATIPNAR--QFAEWICHIHKQPCHVVYTD-YRPTPLQHYIFPAGGDGLYLVVDE 324 (1041)
T ss_pred cee--eee---eEEeccccceEEEEeccCCCHH--HHHHHHHHHhcCCceEEeec-CCCCcceeeeecCCCCeeEEEEec
Confidence 111 111 1113677899999999998743 34555431 2233333222 222211111 110
Q ss_pred c--cchhhHH-----------------------------------HHHHHHHHHhccCCCCCceEEEEecccchHHHHHH
Q psy7952 276 D--LLKDSYA-----------------------------------HVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLAD 318 (444)
Q Consensus 276 ~--~~~~~~~-----------------------------------~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~ 318 (444)
. ..++... .+...++-.+.+ ...++|||+.|+++|+..|-
T Consensus 325 k~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~---~~~PVIvFSFSkkeCE~~Al 401 (1041)
T KOG0948|consen 325 KGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMER---NYLPVIVFSFSKKECEAYAL 401 (1041)
T ss_pred ccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhh---cCCceEEEEecHhHHHHHHH
Confidence 0 0111111 111222222222 46789999999999999998
Q ss_pred HHHhh-------------------------------------------------cCHHHHHHHHHHHhcCCccEEEEcCc
Q psy7952 319 ALRRK-------------------------------------------------VNKHERSRVQESFMRGEINVITATIS 349 (444)
Q Consensus 319 ~L~~~-------------------------------------------------~~~~~r~~~~~~f~~g~~~vLvaT~~ 349 (444)
.+.+. +-+--++-++-.|..|-+++|.||.+
T Consensus 402 qm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATET 481 (1041)
T KOG0948|consen 402 QMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATET 481 (1041)
T ss_pred hhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhh
Confidence 88766 44556667777889999999999999
Q ss_pred cccccccCCccEEEEeCCC---------CCHHHHHHHhccCCCCCCc--eeEEEEeccc-chhhHHHHHhhccchhHH
Q psy7952 350 FGMGIDRQNVRFVVHWGMP---------SSIPAYYQESGRAGRDGLQ--SYCRIYHSEH-SKKSLEYVIKTDTSTKRE 415 (444)
Q Consensus 350 ~~~Gidi~~~~~Vi~~~~p---------~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 415 (444)
++.|+|+|.-.+|+ ...- -|.-+|+||.|||||.|.. |.|++.++.. +....+.+.+-.....++
T Consensus 482 FsiGLNMPAkTVvF-T~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnS 558 (1041)
T KOG0948|consen 482 FSIGLNMPAKTVVF-TAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNS 558 (1041)
T ss_pred hhhccCCcceeEEE-eeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhh
Confidence 99999999554444 3322 2667899999999999865 7777777644 556666666655444433
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=3.6e-24 Score=217.12 Aligned_cols=322 Identities=19% Similarity=0.162 Sum_probs=216.0
Q ss_pred HHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchh
Q psy7952 36 LTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPIL 115 (444)
Q Consensus 36 ~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~ 115 (444)
+.++.++.+|..+|. .|.-..-.+.+| -+..++||+|||++ +.+|+++..+. +.. |-|++|+.
T Consensus 70 vrEa~~R~lg~~~~d--vQlig~l~L~~G---~Iaem~TGeGKTLv--------a~lpa~l~aL~-G~~---V~IvTpn~ 132 (830)
T PRK12904 70 VREASKRVLGMRHFD--VQLIGGMVLHEG---KIAEMKTGEGKTLV--------ATLPAYLNALT-GKG---VHVVTVND 132 (830)
T ss_pred HHHHHHHHhCCCCCc--cHHHhhHHhcCC---chhhhhcCCCcHHH--------HHHHHHHHHHc-CCC---EEEEecCH
Confidence 346677777988744 797777777666 48999999999999 55555333332 223 47999999
Q ss_pred hhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH------
Q psy7952 116 SSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL------ 187 (444)
Q Consensus 116 ~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~------ 187 (444)
.|| .|..+.+..+ ..| +++..+.++.+..++...+ .++|+++||..+. |+.+..+.
T Consensus 133 yLA--~rd~e~~~~l~~~LG---lsv~~i~~~~~~~er~~~y--------~~dI~ygT~~elg---fDyLrd~~~~~~~~ 196 (830)
T PRK12904 133 YLA--KRDAEWMGPLYEFLG---LSVGVILSGMSPEERREAY--------AADITYGTNNEFG---FDYLRDNMVFSLEE 196 (830)
T ss_pred HHH--HHHHHHHHHHHhhcC---CeEEEEcCCCCHHHHHHhc--------CCCeEEECCcchh---hhhhhcccccchhh
Confidence 999 3334444444 556 9999999998887776655 4899999999985 24444333
Q ss_pred HhhCCccEEEEecccccc-ccC----------CCcHHHHHHHHHHHHhh-------------------------------
Q psy7952 188 VRYNKLAYIVVDEAHCVS-EWG----------HDFRPTYRRLGELRQFT------------------------------- 225 (444)
Q Consensus 188 ~~~~~~~~iViDE~H~~~-~~~----------~~~~~~~~~l~~~~~~~------------------------------- 225 (444)
.....+.++|+||+|.++ +.. ......|..+..+.+.+
T Consensus 197 ~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~ 276 (830)
T PRK12904 197 RVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGI 276 (830)
T ss_pred hcccccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCC
Confidence 225678999999999883 311 00001111111111111
Q ss_pred --------------------------------------------------------------------------------
Q psy7952 226 -------------------------------------------------------------------------------- 225 (444)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (444)
T Consensus 277 ~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~I 356 (830)
T PRK12904 277 ENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASI 356 (830)
T ss_pred ccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeee
Confidence
Q ss_pred ------CCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEE--EcccchhhHHHHHHHHHHHhccCC
Q psy7952 226 ------GNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI--FDDLLKDSYAHVKEFIEKCLGKDN 297 (444)
Q Consensus 226 ------~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~ 297 (444)
.-..++.+||+|.... ...+.+..++ .+..-+..+|.+..... .......++..+.+.+.+..
T Consensus 357 t~qn~Fr~Y~kl~GmTGTa~te-~~E~~~iY~l----~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~---- 427 (830)
T PRK12904 357 TFQNYFRMYEKLAGMTGTADTE-AEEFREIYNL----DVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERH---- 427 (830)
T ss_pred eHHHHHHhcchhcccCCCcHHH-HHHHHHHhCC----CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHH----
Confidence 0111246666666432 3333333332 22222334454443311 11122344555555554432
Q ss_pred CCCceEEEEecccchHHHHHHHHHhh--------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCc----------
Q psy7952 298 KANNCGIIYCRTREHTTDLADALRRK--------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNV---------- 359 (444)
Q Consensus 298 ~~~~~~iVf~~s~~~~~~l~~~L~~~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~---------- 359 (444)
..+.++||||+|++.++.++..|.+. -...+|...+..|+.++..|+|||++++||+||+=-
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnakq~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~ 507 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAAL 507 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCchHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhh
Confidence 25789999999999999999999877 346789999999999999999999999999999732
Q ss_pred ----------------------------cEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 360 ----------------------------RFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 360 ----------------------------~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
-+||-...|.|.+---|-.||+||.|.+|.+..|++-+|.
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 508 LEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2688888999999999999999999999999999986654
No 96
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.92 E-value=1.8e-24 Score=213.45 Aligned_cols=305 Identities=13% Similarity=0.065 Sum_probs=195.9
Q ss_pred chHHHHHHHHHH----ccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccch
Q psy7952 51 CELQKKAIRHIL----LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDK 126 (444)
Q Consensus 51 t~~Q~~~~~~~~----~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~ 126 (444)
..||..|+.++. +|++.++++++||+|||.+|+ . ++..+++.+..+||||++-+++|+ .|.
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi---------a-ii~rL~r~~~~KRVLFLaDR~~Lv-----~QA 231 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI---------A-IIDRLIKSGWVKRVLFLADRNALV-----DQA 231 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH---------H-HHHHHHhcchhheeeEEechHHHH-----HHH
Confidence 369999987655 466779999999999998843 2 256688888889999999999999 666
Q ss_pred Hhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHH-HHHHHHhhCCccEEEEeccccc
Q psy7952 127 TSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHY-LLQHLVRYNKLAYIVVDEAHCV 204 (444)
Q Consensus 127 ~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~-~~~~~~~~~~~~~iViDE~H~~ 204 (444)
...+ .+.+..-....+.+... ...++|.++|++.+....-.. ..........+++|||||||+-
T Consensus 232 ~~af~~~~P~~~~~n~i~~~~~--------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg 297 (875)
T COG4096 232 YGAFEDFLPFGTKMNKIEDKKG--------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG 297 (875)
T ss_pred HHHHHHhCCCccceeeeecccC--------------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh
Confidence 6555 33222122222222221 236799999999875311010 0011112345899999999983
Q ss_pred cccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHh-cCCCC------------------eEEEecCCCC
Q psy7952 205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVL-KFNKP------------------YKVFKTSTFR 265 (444)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l-~~~~~------------------~~~~~~~~~~ 265 (444)
.-..+..+...+. ...+++||||......+-..++ |.+.. +.+. .....
T Consensus 298 ------i~~~~~~I~dYFd-----A~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~-~~~~~ 365 (875)
T COG4096 298 ------IYSEWSSILDYFD-----AATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRID-TDFDL 365 (875)
T ss_pred ------HHhhhHHHHHHHH-----HHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEe-eeccc
Confidence 2233344433333 2245669999886655555555 32210 0000 00000
Q ss_pred CCc---------------------eEEEEE---cccchhhHHHHHHHHHHHhcc--CCCCCceEEEEecccchHHHHHHH
Q psy7952 266 SNL---------------------FYDVIF---DDLLKDSYAHVKEFIEKCLGK--DNKANNCGIIYCRTREHTTDLADA 319 (444)
Q Consensus 266 ~~~---------------------~~~~~~---~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~iVf~~s~~~~~~l~~~ 319 (444)
..+ .+.... ........+.+...+.+.+.. .+..-+|+||||.+..+|+.+...
T Consensus 366 ~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~ 445 (875)
T COG4096 366 DGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREA 445 (875)
T ss_pred cCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHH
Confidence 000 000000 001112334566777777777 443467999999999999999999
Q ss_pred HHhh-------------cCHHHHHHHHHHHhc--CCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCC
Q psy7952 320 LRRK-------------VNKHERSRVQESFMR--GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384 (444)
Q Consensus 320 L~~~-------------~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 384 (444)
|... ...+.-...+..|.. .-.+|.|+.+++..|||+|.|..+|++..-.|...|-||+||+.|.
T Consensus 446 ~~~~ype~~~~~a~~IT~d~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 446 LVNEYPEYNGRYAMKITGDAEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred HHHhCccccCceEEEEeccchhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 9887 344555566777754 3468999999999999999999999999999999999999999994
Q ss_pred -C------CceeEEEEecc
Q psy7952 385 -G------LQSYCRIYHSE 396 (444)
Q Consensus 385 -g------~~g~~~~~~~~ 396 (444)
+ +....+.+++-
T Consensus 526 ~~~~~~~~~dK~~F~ifDf 544 (875)
T COG4096 526 CPDLGGPEQDKEFFTIFDF 544 (875)
T ss_pred CccccCccccceeEEEEEh
Confidence 2 22455666653
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=2.6e-23 Score=210.12 Aligned_cols=325 Identities=18% Similarity=0.149 Sum_probs=199.9
Q ss_pred HHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcch
Q psy7952 35 ELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPI 114 (444)
Q Consensus 35 ~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~ 114 (444)
-+.++.++.+|..++ +.|.-..-.+.+| + +..+.||.|||++|++ |+ .-....+.. |-+++|+
T Consensus 68 ~vrEa~~R~~g~~~~--dvQlig~l~l~~G-~--iaEm~TGEGKTLvA~l--------~a-~l~al~G~~---v~vvT~n 130 (796)
T PRK12906 68 VAREGAKRVLGLRPF--DVQIIGGIVLHEG-N--IAEMKTGEGKTLTATL--------PV-YLNALTGKG---VHVVTVN 130 (796)
T ss_pred HHHHHHHHHhCCCCc--hhHHHHHHHHhcC-C--cccccCCCCCcHHHHH--------HH-HHHHHcCCC---eEEEecc
Confidence 345677788898864 4798877777776 3 8999999999999554 33 111223333 4899999
Q ss_pred hhhhcccCccchHhhh-----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH-
Q psy7952 115 LSSFYLRFRDDKTSIV-----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV- 188 (444)
Q Consensus 115 ~~L~~~~q~~~~~~~l-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~- 188 (444)
.-|| .+..+.+ .+| +.+..+.++.+..++...+ .+||+++|...+. |+++..++.
T Consensus 131 eyLA-----~Rd~e~~~~~~~~LG---l~vg~i~~~~~~~~r~~~y--------~~dI~Y~t~~e~g---fDyLRD~m~~ 191 (796)
T PRK12906 131 EYLS-----SRDATEMGELYRWLG---LTVGLNLNSMSPDEKRAAY--------NCDITYSTNSELG---FDYLRDNMVV 191 (796)
T ss_pred HHHH-----HhhHHHHHHHHHhcC---CeEEEeCCCCCHHHHHHHh--------cCCCeecCCcccc---ccchhhcccc
Confidence 9999 6666655 566 9999999988887776666 6899999988886 344444321
Q ss_pred -----hhCCccEEEEecccccc-ccC----------CCcHHHHHHHHHHHHhhCC-------------------CCcEEE
Q psy7952 189 -----RYNKLAYIVVDEAHCVS-EWG----------HDFRPTYRRLGELRQFTGN-------------------SIPIIA 233 (444)
Q Consensus 189 -----~~~~~~~iViDE~H~~~-~~~----------~~~~~~~~~l~~~~~~~~~-------------------~~~~v~ 233 (444)
....+.+.||||+|.++ +.. ......|..+..+...+.. ..+.+.
T Consensus 192 ~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~ 271 (796)
T PRK12906 192 YKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTIS 271 (796)
T ss_pred chhhhhccCcceeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCcee
Confidence 13468999999999873 211 1122233333333322211 012222
Q ss_pred Eecc-------------C-Ccc---hHHHHHHH------hcCCCC-------eE--------------------------
Q psy7952 234 LTAT-------------A-EPS---VKQDIISV------LKFNKP-------YK-------------------------- 257 (444)
Q Consensus 234 lSAT-------------~-~~~---~~~~~~~~------l~~~~~-------~~-------------------------- 257 (444)
+|.. + ... ....+... +.-... +.
T Consensus 272 lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaK 351 (796)
T PRK12906 272 LTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAK 351 (796)
T ss_pred ecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHh
Confidence 3321 0 000 00000000 000000 00
Q ss_pred ------------------------------------------------EEecCCCCCCceEEEE--EcccchhhHHHHHH
Q psy7952 258 ------------------------------------------------VFKTSTFRSNLFYDVI--FDDLLKDSYAHVKE 287 (444)
Q Consensus 258 ------------------------------------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 287 (444)
+..-+..+|.+..... .......++..+.+
T Consensus 352 e~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~ 431 (796)
T PRK12906 352 EGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVK 431 (796)
T ss_pred cCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHH
Confidence 1111111222111110 00011223333333
Q ss_pred HHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh--------cCHHHHHHHHHHHhcCCccEEEEcCccccccccC--
Q psy7952 288 FIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--------VNKHERSRVQESFMRGEINVITATISFGMGIDRQ-- 357 (444)
Q Consensus 288 ~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~-- 357 (444)
.+.. ....+.++||||+|++.++.++..|.+. -...+++..+-.+.-.+..|+|||++++||.||+
T Consensus 432 ~i~~----~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~VtIATnmAGRGtDI~l~ 507 (796)
T PRK12906 432 EIKE----RHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLG 507 (796)
T ss_pred HHHH----HHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCceEEEEeccccCCCCCCCC
Confidence 3333 2336899999999999999999999887 1122444444343434455999999999999995
Q ss_pred -Ccc-----EEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 358 -NVR-----FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 358 -~~~-----~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
++. +||+++.|.|.+.|.|++||+||.|.+|.+..+++.+|.
T Consensus 508 ~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 508 PGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred cchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 788 999999999999999999999999999999999987653
No 98
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=7.5e-23 Score=207.80 Aligned_cols=324 Identities=17% Similarity=0.152 Sum_probs=206.3
Q ss_pred HHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhh
Q psy7952 37 TAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILS 116 (444)
Q Consensus 37 ~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~ 116 (444)
.++-++.+|..+|. .|.-.--.+.+| -+..++||+|||++ +.+|+++.. ..+. .|+|++||+.
T Consensus 72 rEa~~R~lg~~~yd--vQliGg~~Lh~G---~Iaem~TGeGKTL~--------a~Lpa~~~a-l~G~---~V~VvTpn~y 134 (896)
T PRK13104 72 REVSLRTLGLRHFD--VQLIGGMVLHEG---NIAEMRTGEGKTLV--------ATLPAYLNA-ISGR---GVHIVTVNDY 134 (896)
T ss_pred HHHHHHHcCCCcch--HHHhhhhhhccC---ccccccCCCCchHH--------HHHHHHHHH-hcCC---CEEEEcCCHH
Confidence 45566667877644 787666666655 47999999999999 677772222 2332 4599999999
Q ss_pred hhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH-h----
Q psy7952 117 SFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV-R---- 189 (444)
Q Consensus 117 L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~-~---- 189 (444)
|| .|..+.+..+ ..| +.+..+.|+.+...+...+ .++|+|+||..|. |+++..+.. .
T Consensus 135 LA--~qd~e~m~~l~~~lG---Ltv~~i~gg~~~~~r~~~y--------~~dIvygT~grlg---fDyLrd~~~~~~~~~ 198 (896)
T PRK13104 135 LA--KRDSQWMKPIYEFLG---LTVGVIYPDMSHKEKQEAY--------KADIVYGTNNEYG---FDYLRDNMAFSLTDK 198 (896)
T ss_pred HH--HHHHHHHHHHhcccC---ceEEEEeCCCCHHHHHHHh--------CCCEEEECChhhh---HHHHhcCCccchHhh
Confidence 99 4445566665 456 9999999998877654444 5899999999984 244444321 1
Q ss_pred -hCCccEEEEecccccc-ccC----------CCcHHHHHHHHHHHHhhCC--------------CCcEEEEecc------
Q psy7952 190 -YNKLAYIVVDEAHCVS-EWG----------HDFRPTYRRLGELRQFTGN--------------SIPIIALTAT------ 237 (444)
Q Consensus 190 -~~~~~~iViDE~H~~~-~~~----------~~~~~~~~~l~~~~~~~~~--------------~~~~v~lSAT------ 237 (444)
...+.++|+||+|.++ |.. ......|..+..+...+.. ..+-+.+|-.
T Consensus 199 v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e 278 (896)
T PRK13104 199 VQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIE 278 (896)
T ss_pred hccccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHH
Confidence 2579999999999883 311 1122334333333332211 1233444433
Q ss_pred --------CC--cchHH--------HHHHHh------cCCCC-------eEEE---------------------------
Q psy7952 238 --------AE--PSVKQ--------DIISVL------KFNKP-------YKVF--------------------------- 259 (444)
Q Consensus 238 --------~~--~~~~~--------~~~~~l------~~~~~-------~~~~--------------------------- 259 (444)
++ .+.++ .+...+ .-... +.++
T Consensus 279 ~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v 358 (896)
T PRK13104 279 ELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGV 358 (896)
T ss_pred HHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCC
Confidence 00 00000 000000 00000 0111
Q ss_pred -----------------------------------------------ecCCCCCCceEEE--EEcccchhhHHHHHHHHH
Q psy7952 260 -----------------------------------------------KTSTFRSNLFYDV--IFDDLLKDSYAHVKEFIE 290 (444)
Q Consensus 260 -----------------------------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ 290 (444)
.-+..+|.+.... ........++..+.+.+.
T Consensus 359 ~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~ 438 (896)
T PRK13104 359 PIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVR 438 (896)
T ss_pred CCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHH
Confidence 1111111111110 001112233444444444
Q ss_pred HHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCC--
Q psy7952 291 KCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQN-- 358 (444)
Q Consensus 291 ~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~-- 358 (444)
+. ...+.|+||||+|++.++.++..|.+. +...++..+.+.|+.| .|+|||++++||+||.=
T Consensus 439 ~~----~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lgg 512 (896)
T PRK13104 439 EC----GVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGG 512 (896)
T ss_pred HH----HhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCC
Confidence 33 336899999999999999999999888 6788999999999998 49999999999999861
Q ss_pred ------------------------------------ccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 359 ------------------------------------VRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 359 ------------------------------------~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
--+||-...+.|.+---|-.||+||.|.+|.+..|++-+|.
T Consensus 513 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 513 SLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred chhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12688888899999999999999999999999999986654
No 99
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.2e-22 Score=203.68 Aligned_cols=293 Identities=19% Similarity=0.230 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
-+++.+.+++..|+.+ . ..|+-+...+..| +++.+.||||.|||.- .++.+ ++-....+|+++++
T Consensus 68 ~e~~~~fF~k~~G~~~-w-s~QR~WakR~~rg-~SFaiiAPTGvGKTTf--------g~~~s----l~~a~kgkr~yii~ 132 (1187)
T COG1110 68 YEEFEEFFKKATGFRP-W-SAQRVWAKRLVRG-KSFAIIAPTGVGKTTF--------GLLMS----LYLAKKGKRVYIIV 132 (1187)
T ss_pred HHHHHHHHHHhhCCCc-h-HHHHHHHHHHHcC-CceEEEcCCCCchhHH--------HHHHH----HHHHhcCCeEEEEe
Confidence 4567778888889975 3 5999999999999 9999999999999965 23333 33333446779999
Q ss_pred chhhhhcccCccchHhhhc--CCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh
Q psy7952 113 PILSSFYLRFRDDKTSIVT--GRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY 190 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~ 190 (444)
||..|+ .|+.+.++.+. .+...+... +|+.....+..+..+.+. .++.||+|+|..-+. .+...+
T Consensus 133 PT~~Lv--~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~--~gdfdIlitTs~FL~--------k~~e~L 199 (1187)
T COG1110 133 PTTTLV--RQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIE--SGDFDILITTSQFLS--------KRFEEL 199 (1187)
T ss_pred cCHHHH--HHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHh--cCCccEEEEeHHHHH--------hhHHHh
Confidence 999999 44445555551 222234444 888888888888888876 588999999955542 222223
Q ss_pred --CCccEEEEeccccccccCCCcHHHH-----------------------------HHHHHHHHh--------hCCCCcE
Q psy7952 191 --NKLAYIVVDEAHCVSEWGHDFRPTY-----------------------------RRLGELRQF--------TGNSIPI 231 (444)
Q Consensus 191 --~~~~~iViDE~H~~~~~~~~~~~~~-----------------------------~~l~~~~~~--------~~~~~~~ 231 (444)
.+|++|++|++|.++..+......+ ..+.+.... -.+...+
T Consensus 200 ~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~L 279 (1187)
T COG1110 200 SKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGIL 279 (1187)
T ss_pred cccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceE
Confidence 4799999999999865331111100 001111000 1223568
Q ss_pred EEEeccCCcch--HHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecc
Q psy7952 232 IALTATAEPSV--KQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRT 309 (444)
Q Consensus 232 v~lSAT~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s 309 (444)
+..|||..+.- ...+++.+++... .......|+.-.+.. ....+...++++.+ +..+|||++.
T Consensus 280 vvsSATg~~rg~R~~LfReLlgFevG----~~~~~LRNIvD~y~~----~~~~e~~~elvk~l-------G~GgLIfV~~ 344 (1187)
T COG1110 280 VVSSATGKPRGSRLKLFRELLGFEVG----SGGEGLRNIVDIYVE----SESLEKVVELVKKL-------GDGGLIFVPI 344 (1187)
T ss_pred EEeeccCCCCCchHHHHHHHhCCccC----ccchhhhheeeeecc----CccHHHHHHHHHHh-------CCCeEEEEEc
Confidence 99999976644 2345666665422 111222232222221 15556666777775 6678999999
Q ss_pred ---cchHHHHHHHHHhh-----cCHHHHHHHHHHHhcCCccEEEEc----CccccccccCC-ccEEEEeCCC
Q psy7952 310 ---REHTTDLADALRRK-----VNKHERSRVQESFMRGEINVITAT----ISFGMGIDRQN-VRFVVHWGMP 368 (444)
Q Consensus 310 ---~~~~~~l~~~L~~~-----~~~~~r~~~~~~f~~g~~~vLvaT----~~~~~Gidi~~-~~~Vi~~~~p 368 (444)
++.++++++.|++. .-...+...++.|..|++++||+. .++-+|+|+|. ++.+|++|.|
T Consensus 345 d~G~e~aeel~e~Lr~~Gi~a~~~~a~~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 345 DYGREKAEELAEYLRSHGINAELIHAEKEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHhHHHHHHHHHHHHhcCceEEEeeccchhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 89999999999988 222334888999999999999986 57899999996 8899999988
No 100
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.90 E-value=1.9e-23 Score=185.33 Aligned_cols=188 Identities=19% Similarity=0.240 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC--CccceeEE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG--NVRSRNGW 110 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~--~~~~~vli 110 (444)
+.++.+.+++ +|++. ++++|.++++.+.++ +++++.+|||+|||++ |.+++ +..+... ...++++|
T Consensus 7 ~~~i~~~l~~-~~~~~-~~~~Q~~~~~~~~~~-~~~li~~~TG~GKT~~--------~~~~~-l~~~~~~~~~~~~~vii 74 (203)
T cd00268 7 SPELLRGIYA-LGFEK-PTPIQARAIPPLLSG-RDVIGQAQTGSGKTAA--------FLIPI-LEKLDPSPKKDGPQALI 74 (203)
T ss_pred CHHHHHHHHH-cCCCC-CCHHHHHHHHHHhcC-CcEEEECCCCCcHHHH--------HHHHH-HHHHHhhcccCCceEEE
Confidence 4557888888 69997 568999999999998 9999999999999999 66666 4444444 34568899
Q ss_pred EcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh
Q psy7952 111 ISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY 190 (444)
Q Consensus 111 l~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~ 190 (444)
++|+++|+ .|+.+.++.+... ..+++..++|+.........+ ..+++|+|+||+.+. ..+......+
T Consensus 75 i~p~~~L~--~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~iiv~T~~~l~----~~l~~~~~~~ 141 (203)
T cd00268 75 LAPTRELA--LQIAEVARKLGKH-TNLKVVVIYGGTSIDKQIRKL------KRGPHIVVATPGRLL----DLLERGKLDL 141 (203)
T ss_pred EcCCHHHH--HHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHh------cCCCCEEEEChHHHH----HHHHcCCCCh
Confidence 99999999 2223334444211 238888889888765544333 357899999999974 3333444456
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHh
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVL 250 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l 250 (444)
.+++++|+||+|.+.+.+ +...+..+ ...++.+.+++++|||+++...+.+...+
T Consensus 142 ~~l~~lIvDE~h~~~~~~--~~~~~~~~---~~~l~~~~~~~~~SAT~~~~~~~~~~~~~ 196 (203)
T cd00268 142 SKVKYLVLDEADRMLDMG--FEDQIREI---LKLLPKDRQTLLFSATMPKEVRDLARKFL 196 (203)
T ss_pred hhCCEEEEeChHHhhccC--hHHHHHHH---HHhCCcccEEEEEeccCCHHHHHHHHHHC
Confidence 789999999999987544 44444443 34455578999999999987766655554
No 101
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.89 E-value=1.1e-21 Score=205.19 Aligned_cols=310 Identities=14% Similarity=0.133 Sum_probs=196.1
Q ss_pred cCchHHHHHHHHHHc---cCCcEEEEccCCCcccccccccccceEEeCCCccccc-cCCccceeEEEcchhhhhcccCcc
Q psy7952 49 FKCELQKKAIRHILL---RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFIL-NGNVRSRNGWISPILSSFYLRFRD 124 (444)
Q Consensus 49 ~~t~~Q~~~~~~~~~---~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~-~~~~~~~vlil~P~~~L~~~~q~~ 124 (444)
++ +||.+.+..+.. ...+.|+.-..|.|||+.++.++ ..+. ..+...++|||||...+.. |.
T Consensus 170 Lr-~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL----------~~L~~~~~~~gp~LIVvP~SlL~n---W~ 235 (1033)
T PLN03142 170 MR-DYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL----------GYLHEYRGITGPHMVVAPKSTLGN---WM 235 (1033)
T ss_pred hH-HHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH----------HHHHHhcCCCCCEEEEeChHHHHH---HH
Confidence 44 799999998863 22788999999999998733211 1121 2233345599999877762 34
Q ss_pred chHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccc
Q psy7952 125 DKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204 (444)
Q Consensus 125 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~ 204 (444)
+.+..+... +.+..++|..... ........ ..+.++|+|+|++.+.. .........+++||+||+|++
T Consensus 236 ~Ei~kw~p~---l~v~~~~G~~~eR--~~~~~~~~-~~~~~dVvITSYe~l~~------e~~~L~k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 236 NEIRRFCPV---LRAVKFHGNPEER--AHQREELL-VAGKFDVCVTSFEMAIK------EKTALKRFSWRYIIIDEAHRI 303 (1033)
T ss_pred HHHHHHCCC---CceEEEeCCHHHH--HHHHHHHh-cccCCCcceecHHHHHH------HHHHhccCCCCEEEEcCcccc
Confidence 555555444 7777787754322 12111111 24578999999888642 112223346899999999997
Q ss_pred cccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec---------C-------------
Q psy7952 205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT---------S------------- 262 (444)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~---------~------------- 262 (444)
-... ..+.+.+..+.. ...+++||||..+...++...+.+-.|-..... .
T Consensus 304 KN~~-------Sklskalr~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~ 375 (1033)
T PLN03142 304 KNEN-------SLLSKTMRLFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLH 375 (1033)
T ss_pred CCHH-------HHHHHHHHHhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHH
Confidence 5432 222222333333 556899999988777766666554322110000 0
Q ss_pred ----------------CCCCCceEEEEEcccch---hhH-----------------------------------------
Q psy7952 263 ----------------TFRSNLFYDVIFDDLLK---DSY----------------------------------------- 282 (444)
Q Consensus 263 ----------------~~~~~~~~~~~~~~~~~---~~~----------------------------------------- 282 (444)
...|+............ ..+
T Consensus 376 ~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~e 455 (1033)
T PLN03142 376 KVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAE 455 (1033)
T ss_pred HHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhccc
Confidence 00111111111111000 000
Q ss_pred --------------HHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhc
Q psy7952 283 --------------AHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMR 338 (444)
Q Consensus 283 --------------~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~ 338 (444)
.....++..++......+.++|||+........+.+.|... ++..+|...++.|..
T Consensus 456 p~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~ 535 (1033)
T PLN03142 456 PGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNK 535 (1033)
T ss_pred ccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhcc
Confidence 00111222233333335789999999999898888888655 888999999999975
Q ss_pred C---CccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEE
Q psy7952 339 G---EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI 392 (444)
Q Consensus 339 g---~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 392 (444)
. ...+|++|.+++.|||+..+++||+||+++++....|++||+.|-|+...+.+
T Consensus 536 ~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~V 592 (1033)
T PLN03142 536 PGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQV 592 (1033)
T ss_pred ccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEE
Confidence 3 23568999999999999999999999999999999999999999998866544
No 102
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.8e-22 Score=201.72 Aligned_cols=322 Identities=18% Similarity=0.157 Sum_probs=213.8
Q ss_pred chHHHHHHHHHHcc---CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchH
Q psy7952 51 CELQKKAIRHILLR---THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKT 127 (444)
Q Consensus 51 t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~ 127 (444)
++-|+.++..+... ....++.+.||||||.+ |+ .++.+.+..+... |+++|..+|. .+.+
T Consensus 200 n~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEv--------Yl-~~i~~~L~~Gkqv---LvLVPEI~Lt-----pq~~ 262 (730)
T COG1198 200 NQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEV--------YL-EAIAKVLAQGKQV---LVLVPEIALT-----PQLL 262 (730)
T ss_pred CHHHHHHHHHHHHhcccccceeEeCCCCCcHHHH--------HH-HHHHHHHHcCCEE---EEEeccccch-----HHHH
Confidence 46899999988765 47799999999999999 54 3324444445444 9999999999 8888
Q ss_pred hhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccc
Q psy7952 128 SIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVS 205 (444)
Q Consensus 128 ~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~ 205 (444)
.++ +++ .++..++++.+..++...+.... .+...|+|||= ..-+..+.++++||+||=|.-.
T Consensus 263 ~rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~--~G~~~vVIGtR-----------SAlF~Pf~~LGLIIvDEEHD~s 326 (730)
T COG1198 263 ARFKARFG---AKVAVLHSGLSPGERYRVWRRAR--RGEARVVIGTR-----------SALFLPFKNLGLIIVDEEHDSS 326 (730)
T ss_pred HHHHHHhC---CChhhhcccCChHHHHHHHHHHh--cCCceEEEEec-----------hhhcCchhhccEEEEecccccc
Confidence 999 778 99999999999888877776664 58899999992 2334457799999999999753
Q ss_pred ccCC-CcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCC--CCCCceEEEEEcccchh--
Q psy7952 206 EWGH-DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST--FRSNLFYDVIFDDLLKD-- 280 (444)
Q Consensus 206 ~~~~-~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-- 280 (444)
-... ..+..-..+.-++.... ++++|+-||||.=.....+.. +-.....+..... ..|.+...-...+....
T Consensus 327 YKq~~~prYhARdvA~~Ra~~~-~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~ 403 (730)
T COG1198 327 YKQEDGPRYHARDVAVLRAKKE-NAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGR 403 (730)
T ss_pred ccCCcCCCcCHHHHHHHHHHHh-CCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCc
Confidence 2211 12222233333333333 489999999996554443311 1001111111111 12222222222221111
Q ss_pred -hHHHHHHHHHHHhccCCCCCceEEEEecccchHHHH-------------------------------------------
Q psy7952 281 -SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDL------------------------------------------- 316 (444)
Q Consensus 281 -~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l------------------------------------------- 316 (444)
-...+.+.+.+.++ .++++|+|.|.+..+-.+
T Consensus 404 ~lS~~Ll~~i~~~l~----~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp 479 (730)
T COG1198 404 SLSPALLEAIRKTLE----RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCP 479 (730)
T ss_pred cCCHHHHHHHHHHHh----cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCC
Confidence 12344555555444 477888888776654332
Q ss_pred -----------------HHHHHhh--------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEe
Q psy7952 317 -----------------ADALRRK--------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHW 365 (444)
Q Consensus 317 -----------------~~~L~~~--------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~ 365 (444)
.+.|.+. ..+..-...++.|.+|+.+|||+|+++.-|.|+|++..|...
T Consensus 480 ~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl 559 (730)
T COG1198 480 ECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVL 559 (730)
T ss_pred CCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEE
Confidence 1111111 345556788999999999999999999999999999987655
Q ss_pred CCCC------------CHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhccch
Q psy7952 366 GMPS------------SIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTST 412 (444)
Q Consensus 366 ~~p~------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (444)
+... ....+.|..||+||.+.+|.+++-.-..+...++.+...+...
T Consensus 560 ~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~ 618 (730)
T COG1198 560 DADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEA 618 (730)
T ss_pred echhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHH
Confidence 5322 3555789999999999999999888877877777777655443
No 103
>KOG0949|consensus
Probab=99.88 E-value=3.9e-22 Score=198.13 Aligned_cols=88 Identities=26% Similarity=0.388 Sum_probs=70.9
Q ss_pred cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCC--CCCHHHHHHHhccCCCCCCceeEEEEecccchhh
Q psy7952 324 VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGM--PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 401 (444)
Q Consensus 324 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~--p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 401 (444)
++..+|..++-.|+.|...||+||.+++-|||+| |++|++.+- --++-+|.|+.|||||.|-.-.+-+++-.-...+
T Consensus 972 lNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMP-CrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~~k 1050 (1330)
T KOG0949|consen 972 LNRKYRSLVEVLFRQGHLQVLFATETLSLGINMP-CRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPRQK 1050 (1330)
T ss_pred cchHHHHHHHHHhhcCceEEEEEeeehhcccCCC-ceeEEEeccccccCchhHHhhhccccccccccccceEEEeCcHHH
Confidence 8899999999999999999999999999999999 555554442 3478899999999999998755555555566667
Q ss_pred HHHHHhhccch
Q psy7952 402 LEYVIKTDTST 412 (444)
Q Consensus 402 ~~~~~~~~~~~ 412 (444)
++.+....++.
T Consensus 1051 v~rLlts~L~d 1061 (1330)
T KOG0949|consen 1051 VQRLLTSLLPD 1061 (1330)
T ss_pred HHHHHHHhhhc
Confidence 77777665554
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=1e-21 Score=203.71 Aligned_cols=327 Identities=17% Similarity=0.159 Sum_probs=186.6
Q ss_pred chHHHHHHHHHHccC--C-cEEEEccCCCcccccccccccceEEeCCCcccccc-CCccceeEEEcchhhhhcccCccch
Q psy7952 51 CELQKKAIRHILLRT--H-DIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN-GNVRSRNGWISPILSSFYLRFRDDK 126 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~--~-~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~-~~~~~~vlil~P~~~L~~~~q~~~~ 126 (444)
.++|..++..+.... . .+++.||||+|||.+++.++.. .+.. ....+|++++.|+++++ +++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~---------~~~~~~~~~~r~i~vlP~~t~i-----e~~ 262 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALA---------LLDEKIKLKSRVIYVLPFRTII-----EDM 262 (733)
T ss_pred hHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHH---------HhhccccccceEEEEccHHHHH-----HHH
Confidence 468999999888742 4 7899999999999996554332 1222 22456789999999999 666
Q ss_pred Hhhh--cCCCCceeEEEEeCCCChhhHHHHHH---HH-----HhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEE
Q psy7952 127 TSIV--TGRSDLYQLELIVSGQTKTENKAILE---EL-----RLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYI 196 (444)
Q Consensus 127 ~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~i 196 (444)
.+++ ..+...+.....++..........-. .. .....-..+.++||.......+..........-..+++
T Consensus 263 ~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~v 342 (733)
T COG1203 263 YRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLV 342 (733)
T ss_pred HHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhch
Confidence 6666 12211122221344332221110000 00 00001123333333332210000000000000123789
Q ss_pred EEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcc
Q psy7952 197 VVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDD 276 (444)
Q Consensus 197 ViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (444)
|+||+|.+.+.. ....+..+...+... +.++|+||||+|+...+.+....+-...... .....+..........
T Consensus 343 IlDE~h~~~~~~--~~~~l~~~i~~l~~~--g~~ill~SATlP~~~~~~l~~~~~~~~~~~~--~~~~~~~~~e~~~~~~ 416 (733)
T COG1203 343 ILDEVHLYADET--MLAALLALLEALAEA--GVPVLLMSATLPPFLKEKLKKALGKGREVVE--NAKFCPKEDEPGLKRK 416 (733)
T ss_pred hhccHHhhcccc--hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHHHhcccceec--cccccccccccccccc
Confidence 999999987653 233333333443333 3789999999999998888777653322211 1110000000000000
Q ss_pred cchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHH----hcCCcc
Q psy7952 277 LLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESF----MRGEIN 342 (444)
Q Consensus 277 ~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f----~~g~~~ 342 (444)
.......................+.+++|.|||+..|.+++..|+.. +...+|.+.++.+ +.+...
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~ 496 (733)
T COG1203 417 ERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGF 496 (733)
T ss_pred cchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCe
Confidence 00000000001122222223346889999999999999999999887 5566777666654 467899
Q ss_pred EEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCC--CceeEEEEecccchh
Q psy7952 343 VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG--LQSYCRIYHSEHSKK 400 (444)
Q Consensus 343 vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~ 400 (444)
|+|||++.+.|+|+. .+.+|- -+..+++.+||+||++|.| .+|..+++.......
T Consensus 497 IvVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~ 553 (733)
T COG1203 497 IVVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGP 553 (733)
T ss_pred EEEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeecccCCC
Confidence 999999999999996 676664 3445999999999999999 677777776544433
No 105
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=4.5e-21 Score=194.64 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=100.1
Q ss_pred CCccc--CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccC
Q psy7952 45 GFDSF--KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRF 122 (444)
Q Consensus 45 g~~~~--~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q 122 (444)
|++.. .+|+|.++++.+..+ ++++..++||+|||++ |.+|+ +..+..+. .++|++||++|+ .|
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~-~gvIAeaqTGeGKTLA--------f~LP~-l~~aL~g~---~v~IVTpTrELA--~Q 150 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMH-KGFITEMQTGEGKTLT--------AVMPL-YLNALTGK---PVHLVTVNDYLA--QR 150 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcC-CCeEEEeCCCCChHHH--------HHHHH-HHHHhhcC---CeEEEeCCHHHH--HH
Confidence 67762 278999999999999 9999999999999999 88887 32233333 358999999999 55
Q ss_pred ccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh-------CCc
Q psy7952 123 RDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY-------NKL 193 (444)
Q Consensus 123 ~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~-------~~~ 193 (444)
+.+.+..+ ..+ +++..+.|+.+...+...+ .++|+|+||.+|. |+.+....... ..+
T Consensus 151 dae~m~~L~k~lG---LsV~~i~GG~~~~eq~~~y--------~~DIVygTPgRLg---fDyLrd~~~~~~~~~~vqr~~ 216 (970)
T PRK12899 151 DCEWVGSVLRWLG---LTTGVLVSGSPLEKRKEIY--------QCDVVYGTASEFG---FDYLRDNSIATRKEEQVGRGF 216 (970)
T ss_pred HHHHHHHHHhhcC---CeEEEEeCCCCHHHHHHHc--------CCCEEEECCChhH---HHHhhCCCCCcCHHHhhcccc
Confidence 56777766 456 8999999998877665433 5899999999983 13333332222 356
Q ss_pred cEEEEeccccccc
Q psy7952 194 AYIVVDEAHCVSE 206 (444)
Q Consensus 194 ~~iViDE~H~~~~ 206 (444)
.++|+||||.++-
T Consensus 217 ~~~IIDEADsmLi 229 (970)
T PRK12899 217 YFAIIDEVDSILI 229 (970)
T ss_pred cEEEEechhhhhh
Confidence 8999999999853
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.88 E-value=7.3e-23 Score=176.11 Aligned_cols=162 Identities=23% Similarity=0.341 Sum_probs=117.2
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
|++|.++++.+.++ +++++.+|||+|||++ +.+++ +..+... ...++++++|+++|+ .++.+.+
T Consensus 1 t~~Q~~~~~~i~~~-~~~li~aptGsGKT~~--------~~~~~-l~~~~~~-~~~~~lii~P~~~l~-----~q~~~~~ 64 (169)
T PF00270_consen 1 TPLQQEAIEAIISG-KNVLISAPTGSGKTLA--------YILPA-LNRLQEG-KDARVLIIVPTRALA-----EQQFERL 64 (169)
T ss_dssp -HHHHHHHHHHHTT-SEEEEECSTTSSHHHH--------HHHHH-HHHHHTT-SSSEEEEEESSHHHH-----HHHHHHH
T ss_pred CHHHHHHHHHHHcC-CCEEEECCCCCccHHH--------HHHHH-HhhhccC-CCceEEEEeeccccc-----ccccccc
Confidence 68999999999987 8999999999999999 55555 4434444 334779999999999 6666666
Q ss_pred --cCCCCceeEEEEeCCCChh-hHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccccc
Q psy7952 131 --TGRSDLYQLELIVSGQTKT-ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEW 207 (444)
Q Consensus 131 --~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~ 207 (444)
......+++..++++.... ...... .++++|+|+||+++. ..+......+.++++||+||+|.+..+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ilv~T~~~l~----~~~~~~~~~~~~~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 65 RKFFSNTNVRVVLLHGGQSISEDQREVL------SNQADILVTTPEQLL----DLISNGKINISRLSLIVIDEAHHLSDE 134 (169)
T ss_dssp HHHTTTTTSSEEEESTTSCHHHHHHHHH------HTTSSEEEEEHHHHH----HHHHTTSSTGTTESEEEEETHHHHHHT
T ss_pred cccccccccccccccccccccccccccc------cccccccccCcchhh----ccccccccccccceeeccCcccccccc
Confidence 2222347888888887744 222222 357999999999974 222222224566999999999999876
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcc
Q psy7952 208 GHDFRPTYRRLGELRQFTGNSIPIIALTATAEPS 241 (444)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~ 241 (444)
+ +...+..+...+.... +.+++++|||+++.
T Consensus 135 ~--~~~~~~~i~~~~~~~~-~~~~i~~SAT~~~~ 165 (169)
T PF00270_consen 135 T--FRAMLKSILRRLKRFK-NIQIILLSATLPSN 165 (169)
T ss_dssp T--HHHHHHHHHHHSHTTT-TSEEEEEESSSTHH
T ss_pred c--HHHHHHHHHHHhcCCC-CCcEEEEeeCCChh
Confidence 4 6666666665554444 38899999999843
No 107
>KOG0922|consensus
Probab=99.88 E-value=1e-20 Score=182.90 Aligned_cols=295 Identities=17% Similarity=0.187 Sum_probs=194.2
Q ss_pred HHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCcc--ceeEEEcchhhhhcccCccchHhhh
Q psy7952 53 LQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVR--SRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 53 ~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~--~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
+-.+.+..+.++ +-++|.++||+|||.- +|. ++...|-. .++.+.-|.|..+ -...++.
T Consensus 55 ~r~~il~~ve~n-qvlIviGeTGsGKSTQ----------ipQ---yL~eaG~~~~g~I~~TQPRRVAa-----vslA~RV 115 (674)
T KOG0922|consen 55 YRDQILYAVEDN-QVLIVIGETGSGKSTQ----------IPQ---YLAEAGFASSGKIACTQPRRVAA-----VSLAKRV 115 (674)
T ss_pred HHHHHHHHHHHC-CEEEEEcCCCCCcccc----------HhH---HHHhcccccCCcEEeecCchHHH-----HHHHHHH
Confidence 444567777777 8899999999999944 555 34444422 2367777998665 3444443
Q ss_pred ------cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccc
Q psy7952 131 ------TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204 (444)
Q Consensus 131 ------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~ 204 (444)
..| -.|..-..-.+.. .....|.+.|-++|.. . ......+.+.++||+||||.
T Consensus 116 AeE~~~~lG---~~VGY~IRFed~t------------s~~TrikymTDG~LLR----E-~l~Dp~LskYsvIIlDEAHE- 174 (674)
T KOG0922|consen 116 AEEMGCQLG---EEVGYTIRFEDST------------SKDTRIKYMTDGMLLR----E-ILKDPLLSKYSVIILDEAHE- 174 (674)
T ss_pred HHHhCCCcC---ceeeeEEEecccC------------CCceeEEEecchHHHH----H-HhcCCccccccEEEEechhh-
Confidence 333 2332222211111 2467899999998742 1 11222467899999999998
Q ss_pred cccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHH
Q psy7952 205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAH 284 (444)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (444)
..-.-.-.+..++++.+..+. .++|.||||+.. +.+.++++. -++...........+.|.. .. ..+..+.
T Consensus 175 --Rsl~TDiLlGlLKki~~~R~~-LklIimSATlda---~kfS~yF~~-a~i~~i~GR~fPVei~y~~--~p-~~dYv~a 244 (674)
T KOG0922|consen 175 --RSLHTDILLGLLKKILKKRPD-LKLIIMSATLDA---EKFSEYFNN-APILTIPGRTFPVEILYLK--EP-TADYVDA 244 (674)
T ss_pred --hhhHHHHHHHHHHHHHhcCCC-ceEEEEeeeecH---HHHHHHhcC-CceEeecCCCCceeEEecc--CC-chhhHHH
Confidence 332122333445555554444 889999999964 445666542 2333332222222222222 21 2222233
Q ss_pred HHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------------------cCHHHHHHHHHHHhcCCccEEEE
Q psy7952 285 VKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------------------VNKHERSRVQESFMRGEINVITA 346 (444)
Q Consensus 285 ~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------------------~~~~~r~~~~~~f~~g~~~vLva 346 (444)
....+.+.-.. .+.+-++||....++.+.+++.|.+. ++.+++..+++.--.|..+|+++
T Consensus 245 ~~~tv~~Ih~~--E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIls 322 (674)
T KOG0922|consen 245 ALITVIQIHLT--EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILS 322 (674)
T ss_pred HHHHHHHHHcc--CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEE
Confidence 33333333222 35779999999999999999998877 67778888887777899999999
Q ss_pred cCccccccccCCccEEEEeCC------------------CCCHHHHHHHhccCCCCCCceeEEEEecccchh
Q psy7952 347 TISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 400 (444)
Q Consensus 347 T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 400 (444)
|++++..+.||++..||+.|+ |-|-..-.||.|||||. .+|.|+-+++..+..
T Consensus 323 TNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 323 TNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAYD 393 (674)
T ss_pred cceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHHh
Confidence 999999999999999997775 44888899999999999 589999999877763
No 108
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=5.7e-21 Score=193.61 Aligned_cols=324 Identities=18% Similarity=0.148 Sum_probs=203.3
Q ss_pred HHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhh
Q psy7952 37 TAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILS 116 (444)
Q Consensus 37 ~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~ 116 (444)
.++-++.+|..+|. .|.-.--.+.+| -+..++||.|||++ +.+|+++..+ .+.. |.|++|+..
T Consensus 72 rEaa~R~lgm~~yd--VQliGgl~L~~G---~IaEm~TGEGKTL~--------a~lp~~l~al-~g~~---VhIvT~ndy 134 (908)
T PRK13107 72 REASKRVFEMRHFD--VQLLGGMVLDSN---RIAEMRTGEGKTLT--------ATLPAYLNAL-TGKG---VHVITVNDY 134 (908)
T ss_pred HHHHHHHhCCCcCc--hHHhcchHhcCC---ccccccCCCCchHH--------HHHHHHHHHh-cCCC---EEEEeCCHH
Confidence 45666677887644 787666666555 57999999999999 6667622222 2223 599999999
Q ss_pred hhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH-h----
Q psy7952 117 SFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV-R---- 189 (444)
Q Consensus 117 L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~-~---- 189 (444)
|+ .|..+.+..+ ..| +.+..+.++.+...+...+ .++|+++||..|. |+++..++. .
T Consensus 135 LA--~RD~e~m~~l~~~lG---lsv~~i~~~~~~~~r~~~Y--------~~dI~YgT~~e~g---fDyLrdnm~~~~~~~ 198 (908)
T PRK13107 135 LA--RRDAENNRPLFEFLG---LTVGINVAGLGQQEKKAAY--------NADITYGTNNEFG---FDYLRDNMAFSPQER 198 (908)
T ss_pred HH--HHHHHHHHHHHHhcC---CeEEEecCCCCHHHHHhcC--------CCCeEEeCCCccc---chhhhccCccchhhh
Confidence 99 3335555555 667 9999999888765443333 6899999999985 344444421 1
Q ss_pred -hCCccEEEEeccccccccC-----------CCcHHHHHHHHHHHHhhC-------------------CCCcEEEEecc-
Q psy7952 190 -YNKLAYIVVDEAHCVSEWG-----------HDFRPTYRRLGELRQFTG-------------------NSIPIIALTAT- 237 (444)
Q Consensus 190 -~~~~~~iViDE~H~~~~~~-----------~~~~~~~~~l~~~~~~~~-------------------~~~~~v~lSAT- 237 (444)
...+.++|+||+|.++-.. ..-...|..+..+...+. ...+.+.+|-.
T Consensus 199 vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G 278 (908)
T PRK13107 199 VQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERG 278 (908)
T ss_pred hccccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHH
Confidence 2678999999999884311 111223333332222111 01122333311
Q ss_pred -------C---C-----cch--------HHHHHHH------hcCCCC-------eEE-----------------------
Q psy7952 238 -------A---E-----PSV--------KQDIISV------LKFNKP-------YKV----------------------- 258 (444)
Q Consensus 238 -------~---~-----~~~--------~~~~~~~------l~~~~~-------~~~----------------------- 258 (444)
+ . ... ...+... +.-... +.+
T Consensus 279 ~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIE 358 (908)
T PRK13107 279 QEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVE 358 (908)
T ss_pred HHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHH
Confidence 0 0 000 0000000 000000 011
Q ss_pred ---------------------------------------------------EecCCCCCCceEEEE--EcccchhhHHHH
Q psy7952 259 ---------------------------------------------------FKTSTFRSNLFYDVI--FDDLLKDSYAHV 285 (444)
Q Consensus 259 ---------------------------------------------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 285 (444)
..-+..+|.+..... .......++..+
T Consensus 359 aKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Ai 438 (908)
T PRK13107 359 AKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAI 438 (908)
T ss_pred HhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHH
Confidence 111111221111110 011123344455
Q ss_pred HHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccc
Q psy7952 286 KEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGID 355 (444)
Q Consensus 286 ~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 355 (444)
.+.+.+.. ..+.++||||+|++.++.++..|... .+..++..+.+.|+.|. |+|||+++++|.|
T Consensus 439 i~ei~~~~----~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTD 512 (908)
T PRK13107 439 IKDIKDCR----ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTD 512 (908)
T ss_pred HHHHHHHH----HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcc
Confidence 55555442 36889999999999999999999887 67788999999999888 9999999999999
Q ss_pred cCC-------------------------------------ccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccc
Q psy7952 356 RQN-------------------------------------VRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 398 (444)
Q Consensus 356 i~~-------------------------------------~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 398 (444)
|.= --+||-...+.|.+---|-.||+||.|.+|.+..|++-+|
T Consensus 513 IkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 513 IVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred eecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 861 2268888899999999999999999999999999998666
Q ss_pred h
Q psy7952 399 K 399 (444)
Q Consensus 399 ~ 399 (444)
.
T Consensus 593 ~ 593 (908)
T PRK13107 593 S 593 (908)
T ss_pred H
Confidence 4
No 109
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.87 E-value=3.4e-21 Score=196.74 Aligned_cols=300 Identities=17% Similarity=0.201 Sum_probs=199.8
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC--ccceeEEEcchhhhhcccCccchHhh
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN--VRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~--~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
....+.+..+.++ +-++|.+|||+|||.. +|. .+...+ ...++.+.-|.|--+ ....++
T Consensus 53 ~~~~~i~~ai~~~-~vvii~getGsGKTTq----------lP~---~lle~g~~~~g~I~~tQPRRlAA-----rsvA~R 113 (845)
T COG1643 53 AVRDEILKAIEQN-QVVIIVGETGSGKTTQ----------LPQ---FLLEEGLGIAGKIGCTQPRRLAA-----RSVAER 113 (845)
T ss_pred HHHHHHHHHHHhC-CEEEEeCCCCCChHHH----------HHH---HHHhhhcccCCeEEecCchHHHH-----HHHHHH
Confidence 3455566666666 8899999999999955 444 122222 223556677998655 455555
Q ss_pred h--cCCC-CceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccc
Q psy7952 130 V--TGRS-DLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSE 206 (444)
Q Consensus 130 l--~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~ 206 (444)
+ .++. .+-.|..-....+. ...+..|-++|.+.|. ..+.....++.+++||+||+|+
T Consensus 114 vAeel~~~~G~~VGY~iRfe~~------------~s~~Trik~mTdGiLl-----rei~~D~~Ls~ys~vIiDEaHE--- 173 (845)
T COG1643 114 VAEELGEKLGETVGYSIRFESK------------VSPRTRIKVMTDGILL-----REIQNDPLLSGYSVVIIDEAHE--- 173 (845)
T ss_pred HHHHhCCCcCceeeEEEEeecc------------CCCCceeEEeccHHHH-----HHHhhCcccccCCEEEEcchhh---
Confidence 5 2221 01222222211111 1357789999999975 2344444578899999999998
Q ss_pred cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchh-hHHHH
Q psy7952 207 WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKD-SYAHV 285 (444)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 285 (444)
..-+..-.+..+..++...+.+.++|.||||+... .+.++++. -|+...........+.|..... .+. -...+
T Consensus 174 RSl~tDilLgllk~~~~~rr~DLKiIimSATld~~---rfs~~f~~-apvi~i~GR~fPVei~Y~~~~~--~d~~l~~ai 247 (845)
T COG1643 174 RSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE---RFSAYFGN-APVIEIEGRTYPVEIRYLPEAE--ADYILLDAI 247 (845)
T ss_pred hhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHH---HHHHHcCC-CCEEEecCCccceEEEecCCCC--cchhHHHHH
Confidence 22212233444556566667679999999999654 55666642 3433333333333344322221 222 23334
Q ss_pred HHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh--------------cCHHHHHHHHHHHhcCCccEEEEcCccc
Q psy7952 286 KEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--------------VNKHERSRVQESFMRGEINVITATISFG 351 (444)
Q Consensus 286 ~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~--------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 351 (444)
...+..++.. ..+.++||.+...+.+.+++.|.+. ++.++...+++.-..|..+|++||++++
T Consensus 248 ~~~v~~~~~~---~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAE 324 (845)
T COG1643 248 VAAVDIHLRE---GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAE 324 (845)
T ss_pred HHHHHHhccC---CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccc
Confidence 4444444433 4889999999999999999999982 7888888887777677777999999999
Q ss_pred cccccCCccEEEEeCC------------------CCCHHHHHHHhccCCCCCCceeEEEEecccchh
Q psy7952 352 MGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 400 (444)
Q Consensus 352 ~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 400 (444)
.++.||+++.||+.|. |-|-.+..||.|||||. .+|.|+-+++.++..
T Consensus 325 TSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 325 TSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred cceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 9999999999997775 34788899999999999 689999999986655
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=6.4e-21 Score=195.88 Aligned_cols=314 Identities=11% Similarity=0.092 Sum_probs=175.5
Q ss_pred CCHHHHHHHHHHHh------C--CcccCchHHHHHHHHHHc---------cCCcEEEEccCCCcccccccccccceEEeC
Q psy7952 31 VSEQELTAKLKALF------G--FDSFKCELQKKAIRHILL---------RTHDIFVSMPTGAVSLVGSVVSARSRVRIP 93 (444)
Q Consensus 31 ~~~~~~~~~l~~~~------g--~~~~~t~~Q~~~~~~~~~---------~~~~~ii~apTGsGKT~~a~~~~~~~~~~~ 93 (444)
+.+..+.+.++... | ...++..+|.+|+..+.. +.+..+++.|||||||++|+..+
T Consensus 212 ~~~~~ll~~i~~~~~~~~~~~~~~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la------- 284 (667)
T TIGR00348 212 LKKERLLDFIRNFIIFDKDTGLVTKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA------- 284 (667)
T ss_pred cCHHHHHHHHHheEEEECCCCceeeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-------
Confidence 45666666665411 1 123455789999887653 23579999999999999843221
Q ss_pred CCccccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECC
Q psy7952 94 PGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTP 172 (444)
Q Consensus 94 ~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 172 (444)
..+......+++||++|+.+|. .|..+.+ ..+ .... .+..+.. .....+. ....+|+|+|.
T Consensus 285 ---~~l~~~~~~~~vl~lvdR~~L~-----~Q~~~~f~~~~---~~~~--~~~~s~~---~L~~~l~--~~~~~iivtTi 346 (667)
T TIGR00348 285 ---RKALELLKNPKVFFVVDRRELD-----YQLMKEFQSLQ---KDCA--ERIESIA---ELKRLLE--KDDGGIIITTI 346 (667)
T ss_pred ---HHHHhhcCCCeEEEEECcHHHH-----HHHHHHHHhhC---CCCC--cccCCHH---HHHHHHh--CCCCCEEEEEh
Confidence 1123334456889999999999 5666666 333 1100 1111111 1111121 23578999999
Q ss_pred CccccccHHHHHHHHHhh--CCc-cEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHH
Q psy7952 173 ERAVTESFHYLLQHLVRY--NKL-AYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISV 249 (444)
Q Consensus 173 e~l~~~~~~~~~~~~~~~--~~~-~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~ 249 (444)
+++... .......+ ... .+||+||||+... .. +.. .+...+++ ..+++|||||...........
T Consensus 347 Qk~~~~----~~~~~~~~~~~~~~~lvIvDEaHrs~~-----~~-~~~--~l~~~~p~-a~~lGfTaTP~~~~d~~t~~~ 413 (667)
T TIGR00348 347 QKFDKK----LKEEEEKFPVDRKEVVVIFDEAHRSQY-----GE-LAK--NLKKALKN-ASFFGFTGTPIFKKDRDTSLT 413 (667)
T ss_pred HHhhhh----HhhhhhccCCCCCCEEEEEEcCccccc-----hH-HHH--HHHhhCCC-CcEEEEeCCCccccccccccc
Confidence 997531 11111111 111 2899999999532 11 111 12234555 789999999965321111122
Q ss_pred hcC--CCCeEEEec-----CCCCCCceEEEEEccc--chh----------------------------------------
Q psy7952 250 LKF--NKPYKVFKT-----STFRSNLFYDVIFDDL--LKD---------------------------------------- 280 (444)
Q Consensus 250 l~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~---------------------------------------- 280 (444)
++. ...+....- .....++.|....... ...
T Consensus 414 f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 493 (667)
T TIGR00348 414 FAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNED 493 (667)
T ss_pred ccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChH
Confidence 221 111111100 0111112222111100 000
Q ss_pred hHHHHHHHHHHHhcc-CCCCCceEEEEecccchHHHHHHHHHhhcCH---------------------------------
Q psy7952 281 SYAHVKEFIEKCLGK-DNKANNCGIIYCRTREHTTDLADALRRKVNK--------------------------------- 326 (444)
Q Consensus 281 ~~~~~~~~l~~~l~~-~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~--------------------------------- 326 (444)
....+...+.+.... ....+.+++|||.++.+|..+++.|.+..+.
T Consensus 494 ~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~ 573 (667)
T TIGR00348 494 RLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKS 573 (667)
T ss_pred HHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccc
Confidence 001111222222221 1113589999999999999998887553100
Q ss_pred ---HHHHHHHHHHhc-CCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCC
Q psy7952 327 ---HERSRVQESFMR-GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 383 (444)
Q Consensus 327 ---~~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R 383 (444)
.....++++|+. +.+++||.++++..|+|.|.+++++...+..+ ..++|.+||+.|
T Consensus 574 ~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR 633 (667)
T TIGR00348 574 DGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNR 633 (667)
T ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhcc
Confidence 022467888875 68899999999999999999999997776554 568999999999
No 111
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.84 E-value=3.6e-19 Score=188.63 Aligned_cols=180 Identities=17% Similarity=0.112 Sum_probs=119.3
Q ss_pred CcEEEEeccCCcc-hHHHHHHHhcCCCCeEEEe-cCCCC--CCceEEEEEccc-------chhhHHHHHHHHHHHhccCC
Q psy7952 229 IPIIALTATAEPS-VKQDIISVLKFNKPYKVFK-TSTFR--SNLFYDVIFDDL-------LKDSYAHVKEFIEKCLGKDN 297 (444)
Q Consensus 229 ~~~v~lSAT~~~~-~~~~~~~~l~~~~~~~~~~-~~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~l~~~l~~~~ 297 (444)
..+|++|||+... ..+.+.+.+|+.+...... ++... .+... +..... .....+.+.+.+.+++..
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l-~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-- 672 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRV-LIPTDAPAIQNKSLEEYAQEIASYIIEITAI-- 672 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEE-EecCCCCCCCCCChHHHHHHHHHHHHHHHHh--
Confidence 3578999999743 3567778888865432221 11111 11111 111111 122233555566565544
Q ss_pred CCCceEEEEecccchHHHHHHHHHhh-----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCcc--EEEE
Q psy7952 298 KANNCGIIYCRTREHTTDLADALRRK-----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVR--FVVH 364 (444)
Q Consensus 298 ~~~~~~iVf~~s~~~~~~l~~~L~~~-----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~--~Vi~ 364 (444)
.+++++||++|.+..+.++..|... .....|..+++.|++++..||+||+.+++|||+|+.. .||.
T Consensus 673 -~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 -TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGINGSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred -cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCCccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 3679999999999999999999752 1124788999999999999999999999999999755 5777
Q ss_pred eCCCCC------------------------------HHHHHHHhccCCCCCCceeEEEEeccc-chhhHHHHHhhccch
Q psy7952 365 WGMPSS------------------------------IPAYYQESGRAGRDGLQSYCRIYHSEH-SKKSLEYVIKTDTST 412 (444)
Q Consensus 365 ~~~p~s------------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 412 (444)
.+.|.. ...+.|.+||+-|..++.-+++++++. ....+.+.+-..++.
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPE 830 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCC
Confidence 887641 234579999999986654456666655 455666666666664
No 112
>KOG4150|consensus
Probab=99.84 E-value=1.7e-19 Score=170.33 Aligned_cols=323 Identities=14% Similarity=0.069 Sum_probs=213.8
Q ss_pred cccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccch
Q psy7952 47 DSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDK 126 (444)
Q Consensus 47 ~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~ 126 (444)
+.+- .+|.++++.+.+| +++++...|.+||+.+ +.+.+ .+.+.... ....++..|+.+++ +++
T Consensus 285 E~~~-~~~~~~~~~~~~G-~~~~~~~~~~~GK~~~--------~~~~s-~~~~~~~~-~s~~~~~~~~~~~~-----~~~ 347 (1034)
T KOG4150|consen 285 ESGI-AISLELLKFASEG-RADGGNEARQAGKGTC--------PTSGS-RKFQTLCH-ATNSLLPSEMVEHL-----RNG 347 (1034)
T ss_pred cchh-hhhHHHHhhhhhc-ccccccchhhcCCccC--------cccch-hhhhhcCc-ccceecchhHHHHh-----hcc
Confidence 3444 5999999999999 9999999999999999 77666 33222221 12348899999999 566
Q ss_pred Hhhhc---CCCCce---eEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEec
Q psy7952 127 TSIVT---GRSDLY---QLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDE 200 (444)
Q Consensus 127 ~~~l~---~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE 200 (444)
-+.+. ...+.. -+.+..+.. ..+ +..+. ..+..++++.|+++.+.....-.......-...+++.||
T Consensus 348 ~~~~~V~~~~I~~~K~A~V~~~D~~s-E~~-~~A~~-----R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~ 420 (1034)
T KOG4150|consen 348 SKGQVVHVEVIKARKSAYVEMSDKLS-ETT-KSALK-----RIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNS 420 (1034)
T ss_pred CCceEEEEEehhhhhcceeecccCCC-chh-HHHHH-----hcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccc
Confidence 55440 000001 122222222 222 22221 247789999998875322111111112222357889999
Q ss_pred cccccc-cCCCcHHHHHHHHHHHHhhC--CCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEccc
Q psy7952 201 AHCVSE-WGHDFRPTYRRLGELRQFTG--NSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDL 277 (444)
Q Consensus 201 ~H~~~~-~~~~~~~~~~~l~~~~~~~~--~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (444)
+|.+.. .++.....+.++.++...|. .+.+++-.+||+.... +...+.+++..-..+.........-.+.++....
T Consensus 421 ~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~-~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~ 499 (1034)
T KOG4150|consen 421 CALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRT-RLRSELANLSELELVTIDGSPSSEKLFVLWNPSA 499 (1034)
T ss_pred eeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHH-HHHHHhcCCcceEEEEecCCCCccceEEEeCCCC
Confidence 999854 34444555666666666553 3478999999988765 4456666766554444444333333333332222
Q ss_pred ch-------hhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------------------cCHHHHHHH
Q psy7952 278 LK-------DSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------------------VNKHERSRV 332 (444)
Q Consensus 278 ~~-------~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------------------~~~~~r~~~ 332 (444)
.. ....+...++.+++. .+-++|-||.+++-|+-+....+.- ...++|.++
T Consensus 500 ~P~~~~~~~~~i~E~s~~~~~~i~----~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKI 575 (1034)
T KOG4150|consen 500 PPTSKSEKSSKVVEVSHLFAEMVQ----HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKI 575 (1034)
T ss_pred CCcchhhhhhHHHHHHHHHHHHHH----cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHH
Confidence 11 122233333334333 4778999999999988776555443 778999999
Q ss_pred HHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccc
Q psy7952 333 QESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 398 (444)
Q Consensus 333 ~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 398 (444)
+..+..|+..-+|+|+.++.||||..++.|++.|+|.|..++.|..|||||..+++.++.+.....
T Consensus 576 E~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~P 641 (1034)
T KOG4150|consen 576 ESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGP 641 (1034)
T ss_pred HHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccc
Confidence 999999999999999999999999999999999999999999999999999999988887776443
No 113
>KOG1123|consensus
Probab=99.82 E-value=1.4e-18 Score=161.88 Aligned_cols=300 Identities=13% Similarity=0.112 Sum_probs=193.6
Q ss_pred chHHHHHHHHHHccC--CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHh
Q psy7952 51 CELQKKAIRHILLRT--HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTS 128 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~--~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~ 128 (444)
.|||.+.+..+.-+. ++-+|+.|+|+|||++ -.-.+ -...+++|++|.+..-+ .||.+|+.
T Consensus 304 RpYQEksL~KMFGNgRARSGiIVLPCGAGKtLV--------GvTAa-------~tikK~clvLcts~VSV--eQWkqQfk 366 (776)
T KOG1123|consen 304 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLV--------GVTAA-------CTIKKSCLVLCTSAVSV--EQWKQQFK 366 (776)
T ss_pred CchHHHHHHHHhCCCcccCceEEEecCCCCcee--------eeeee-------eeecccEEEEecCccCH--HHHHHHHH
Confidence 479999999998643 6789999999999998 22222 11335679999998888 67788888
Q ss_pred hh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccH----HHHHHHHHhhCCccEEEEecccc
Q psy7952 129 IV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESF----HYLLQHLVRYNKLAYIVVDEAHC 203 (444)
Q Consensus 129 ~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~----~~~~~~~~~~~~~~~iViDE~H~ 203 (444)
.| .... -.++.++++.... ...++.|+|+|+.++....- ..-.-.+.....++++++||+|.
T Consensus 367 ~wsti~d--~~i~rFTsd~Ke~-----------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHv 433 (776)
T KOG1123|consen 367 QWSTIQD--DQICRFTSDAKER-----------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHV 433 (776)
T ss_pred hhcccCc--cceEEeecccccc-----------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhcc
Confidence 88 3321 4566677665432 24688999999999874221 11122334456799999999999
Q ss_pred ccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHH--H----------HHHhcCCCCeEEEecCCCCCCceEE
Q psy7952 204 VSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQD--I----------ISVLKFNKPYKVFKTSTFRSNLFYD 271 (444)
Q Consensus 204 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~--~----------~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (444)
+...- |+..+..+....+ +++|||+.+...+. + .+|+.+.....+. ++...
T Consensus 434 vPA~M--FRRVlsiv~aHcK--------LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA-------~VqCa 496 (776)
T KOG1123|consen 434 VPAKM--FRRVLSIVQAHCK--------LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIA-------KVQCA 496 (776)
T ss_pred chHHH--HHHHHHHHHHHhh--------ccceeEEeeccccccccceeecchhhhccHHHHHhCCcee-------EEeee
Confidence 86544 6665555554332 79999986543221 0 0111111110000 00000
Q ss_pred EEEccc---------------------chhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----cC
Q psy7952 272 VIFDDL---------------------LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-----VN 325 (444)
Q Consensus 272 ~~~~~~---------------------~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-----~~ 325 (444)
-....- .....-...+++.+.-+. .+.++|||..++=...+-+-.|.+- .+
T Consensus 497 EVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~---RgDKiIVFsDnvfALk~YAikl~KpfIYG~Ts 573 (776)
T KOG1123|consen 497 EVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHER---RGDKIIVFSDNVFALKEYAIKLGKPFIYGPTS 573 (776)
T ss_pred eeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHh---cCCeEEEEeccHHHHHHHHHHcCCceEECCCc
Confidence 000000 000111233444444333 5889999999877666666666555 88
Q ss_pred HHHHHHHHHHHh-cCCccEEEEcCccccccccCCccEEEEeCCCC-CHHHHHHHhccCCCCCC------ceeEEEEeccc
Q psy7952 326 KHERSRVQESFM-RGEINVITATISFGMGIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGL------QSYCRIYHSEH 397 (444)
Q Consensus 326 ~~~r~~~~~~f~-~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~------~g~~~~~~~~~ 397 (444)
+.+|..+++.|+ +..++.|.-+.+....+|+|..+++|...... |...=.||.||..|..+ ..+++.+++.+
T Consensus 574 q~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 574 QNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred hhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 999999999998 55688999999999999999999999766543 78888999999988532 34556666655
Q ss_pred chh
Q psy7952 398 SKK 400 (444)
Q Consensus 398 ~~~ 400 (444)
..+
T Consensus 654 TqE 656 (776)
T KOG1123|consen 654 TQE 656 (776)
T ss_pred hHH
Confidence 544
No 114
>KOG0926|consensus
Probab=99.82 E-value=3.4e-19 Score=174.15 Aligned_cols=300 Identities=18% Similarity=0.206 Sum_probs=189.4
Q ss_pred HHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCcc------c-eeEEEcchhhhhcccCccchHh
Q psy7952 56 KAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVR------S-RNGWISPILSSFYLRFRDDKTS 128 (444)
Q Consensus 56 ~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~------~-~vlil~P~~~L~~~~q~~~~~~ 128 (444)
+.++.|..+ .-+||++.||+|||.- +|. .++..|-. + -+-|.-|.|..+ -...+
T Consensus 263 ~IMEaIn~n-~vvIIcGeTGsGKTTQ----------vPQ---FLYEAGf~s~~~~~~gmIGITqPRRVAa-----iamAk 323 (1172)
T KOG0926|consen 263 RIMEAINEN-PVVIICGETGSGKTTQ----------VPQ---FLYEAGFASEQSSSPGMIGITQPRRVAA-----IAMAK 323 (1172)
T ss_pred HHHHHhhcC-CeEEEecCCCCCcccc----------chH---HHHHcccCCccCCCCCeeeecCchHHHH-----HHHHH
Confidence 455566666 6789999999999954 555 22222211 1 234566888776 45555
Q ss_pred hh--cCC--CCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccc
Q psy7952 129 IV--TGR--SDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204 (444)
Q Consensus 129 ~l--~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~ 204 (444)
+. .++ +..+....-..+.. .....|-++|.+.|..+. .+...+...+.||+||||.=
T Consensus 324 RVa~EL~~~~~eVsYqIRfd~ti--------------~e~T~IkFMTDGVLLrEi-----~~DflL~kYSvIIlDEAHER 384 (1172)
T KOG0926|consen 324 RVAFELGVLGSEVSYQIRFDGTI--------------GEDTSIKFMTDGVLLREI-----ENDFLLTKYSVIILDEAHER 384 (1172)
T ss_pred HHHHHhccCccceeEEEEecccc--------------CCCceeEEecchHHHHHH-----HHhHhhhhceeEEechhhhc
Confidence 55 222 11122222222211 246789999999986432 33334567899999999974
Q ss_pred cccCCCcHHHHHHHHHHHHhhCC------CCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccc
Q psy7952 205 SEWGHDFRPTYRRLGELRQFTGN------SIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLL 278 (444)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~------~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (444)
+-...-.-..+.++..+++...+ ..++|.||||+.-.....=...+-++.|+.-+...+.. ..+++....
T Consensus 385 SvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfP----VsIHF~krT 460 (1172)
T KOG0926|consen 385 SVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFP----VSIHFNKRT 460 (1172)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCc----eEEEeccCC
Confidence 32222234455666667666554 46799999998654332223334444553222221111 122222221
Q ss_pred hhhHHHHHHHHHHHhcc-CCCCCceEEEEecccchHHHHHHHHHhh----------------------------------
Q psy7952 279 KDSYAHVKEFIEKCLGK-DNKANNCGIIYCRTREHTTDLADALRRK---------------------------------- 323 (444)
Q Consensus 279 ~~~~~~~~~~l~~~l~~-~~~~~~~~iVf~~s~~~~~~l~~~L~~~---------------------------------- 323 (444)
.. .++.+..++.... ..-+.+.++||+....++++++..|++.
T Consensus 461 ~~--DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~ 538 (1172)
T KOG0926|consen 461 PD--DYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTD 538 (1172)
T ss_pred Cc--hHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccc
Confidence 11 3333333332222 2337889999999999999999999887
Q ss_pred ---------------------------------------------------------------------------cCHHH
Q psy7952 324 ---------------------------------------------------------------------------VNKHE 328 (444)
Q Consensus 324 ---------------------------------------------------------------------------~~~~~ 328 (444)
++.+.
T Consensus 539 dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~ 618 (1172)
T KOG0926|consen 539 DFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEK 618 (1172)
T ss_pred cchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHH
Confidence 56677
Q ss_pred HHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCC------------------CHHHHHHHhccCCCCCCceeE
Q psy7952 329 RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS------------------SIPAYYQESGRAGRDGLQSYC 390 (444)
Q Consensus 329 r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~------------------s~~~~~Qr~GR~~R~g~~g~~ 390 (444)
+..++..--.|..-++|||++++..+.||++.+||+.|.-+ |-.+--||+|||||.| +|+|
T Consensus 619 Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHc 697 (1172)
T KOG0926|consen 619 QMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHC 697 (1172)
T ss_pred hhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCce
Confidence 77777777788888999999999999999999999877543 4455579999999994 8999
Q ss_pred EEEecccchh
Q psy7952 391 RIYHSEHSKK 400 (444)
Q Consensus 391 ~~~~~~~~~~ 400 (444)
+-+|+..-+.
T Consensus 698 YRLYSSAVf~ 707 (1172)
T KOG0926|consen 698 YRLYSSAVFS 707 (1172)
T ss_pred eehhhhHHhh
Confidence 9999865443
No 115
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.9e-18 Score=176.21 Aligned_cols=102 Identities=26% Similarity=0.231 Sum_probs=92.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHhh--------cCHHHHHHHHHHHhcCCccEEEEcCccccccccC---Ccc-----E
Q psy7952 298 KANNCGIIYCRTREHTTDLADALRRK--------VNKHERSRVQESFMRGEINVITATISFGMGIDRQ---NVR-----F 361 (444)
Q Consensus 298 ~~~~~~iVf~~s~~~~~~l~~~L~~~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~---~~~-----~ 361 (444)
..+.++||||+|++.++.++..|... ....+|...+..|+.+...|+|||++++||+||+ .|. +
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLnakq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~ 675 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNAKQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLF 675 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecCCHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCce
Confidence 36889999999999999999999887 5678899999999999999999999999999999 443 4
Q ss_pred EEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 362 VVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 362 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
||.+..|.|.+.|.|++||+||.|.+|.++.|++.+|.
T Consensus 676 VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 676 ILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred eeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 58999999999999999999999999999999987664
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=2.1e-18 Score=171.18 Aligned_cols=317 Identities=18% Similarity=0.169 Sum_probs=204.8
Q ss_pred HHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchh
Q psy7952 36 LTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPIL 115 (444)
Q Consensus 36 ~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~ 115 (444)
+.++.++.+|..++ +.|.-..-.+++| -+..+.||.|||++|++ |+++. ...+..+ .+++|+.
T Consensus 67 vREa~~R~lg~r~y--dvQlig~l~Ll~G---~VaEM~TGEGKTLvA~l--------~a~l~-AL~G~~V---hvvT~Nd 129 (764)
T PRK12326 67 AREAAERTLGLRPF--DVQLLGALRLLAG---DVIEMATGEGKTLAGAI--------AAAGY-ALQGRRV---HVITVND 129 (764)
T ss_pred HHHHHHHHcCCCcc--hHHHHHHHHHhCC---CcccccCCCCHHHHHHH--------HHHHH-HHcCCCe---EEEcCCH
Confidence 34566777788864 4899999999987 35799999999999544 44111 2333344 8999999
Q ss_pred hhhcccCccchHhhh-----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh-
Q psy7952 116 SSFYLRFRDDKTSIV-----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR- 189 (444)
Q Consensus 116 ~L~~~~q~~~~~~~l-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~- 189 (444)
.|+ .+..+.+ .+| +.+..+.++.+..++...+ .+||+++|...+. |+++..++..
T Consensus 130 yLA-----~RDae~m~~ly~~LG---Lsvg~i~~~~~~~err~aY--------~~DItYgTn~e~g---FDyLRDnm~~~ 190 (764)
T PRK12326 130 YLA-----RRDAEWMGPLYEALG---LTVGWITEESTPEERRAAY--------ACDVTYASVNEIG---FDVLRDQLVTD 190 (764)
T ss_pred HHH-----HHHHHHHHHHHHhcC---CEEEEECCCCCHHHHHHHH--------cCCCEEcCCcccc---cccchhhhccC
Confidence 999 6666655 456 9999999998887777666 6899999988876 4444444321
Q ss_pred -----hCCccEEEEecccccc-ccC--------C-CcHHHHHHHHHHHHh------------------------------
Q psy7952 190 -----YNKLAYIVVDEAHCVS-EWG--------H-DFRPTYRRLGELRQF------------------------------ 224 (444)
Q Consensus 190 -----~~~~~~iViDE~H~~~-~~~--------~-~~~~~~~~l~~~~~~------------------------------ 224 (444)
...+.+.||||+|.++ |.. . .-...|..+..+.+.
T Consensus 191 ~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l 270 (764)
T PRK12326 191 VADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKAL 270 (764)
T ss_pred hHhhcCCccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHc
Confidence 2468999999999873 211 0 000001110000000
Q ss_pred --------------------------------------------------------------------------------
Q psy7952 225 -------------------------------------------------------------------------------- 224 (444)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (444)
T Consensus 271 ~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~ 350 (764)
T PRK12326 271 GGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVL 350 (764)
T ss_pred CCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceee
Confidence
Q ss_pred --------hCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEE--EcccchhhHHHHHHHHHHHhc
Q psy7952 225 --------TGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI--FDDLLKDSYAHVKEFIEKCLG 294 (444)
Q Consensus 225 --------~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~ 294 (444)
|....++.+||+|.... ...+.+..++. +..-+..+|.+..... .......++..+.+.+.+.
T Consensus 351 AsIT~QnfFr~Y~kLsGMTGTa~t~-~~Ef~~iY~l~----Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~-- 423 (764)
T PRK12326 351 DTITVQALIGRYPTVCGMTGTAVAA-GEQLRQFYDLG----VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEV-- 423 (764)
T ss_pred ehhhHHHHHHhcchheeecCCChhH-HHHHHHHhCCc----EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHH--
Confidence 00111246777776443 33344443332 2233334444433211 1111234455555555543
Q ss_pred cCCCCCceEEEEecccchHHHHHHHHHhh------cCH--HHHH-HHHHHHhcC-CccEEEEcCccccccccC-------
Q psy7952 295 KDNKANNCGIIYCRTREHTTDLADALRRK------VNK--HERS-RVQESFMRG-EINVITATISFGMGIDRQ------- 357 (444)
Q Consensus 295 ~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------~~~--~~r~-~~~~~f~~g-~~~vLvaT~~~~~Gidi~------- 357 (444)
...+.|+||.|.|++.++.++..|.+. ++. .+++ .++. ..| ...|.|||++++||.||.
T Consensus 424 --~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~ 499 (764)
T PRK12326 424 --HETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEA 499 (764)
T ss_pred --HHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHH--hcCCCCcEEEEecCCCCccCeecCCCccc
Confidence 236899999999999999999999987 211 1222 2221 245 467899999999999986
Q ss_pred --------CccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 358 --------NVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 358 --------~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
+--+||-...+.|.+--.|-.||+||.|.+|.+..|++-+|.
T Consensus 500 ~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 500 DRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred chHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 122789899999999999999999999999999999986553
No 117
>KOG0924|consensus
Probab=99.81 E-value=2.2e-18 Score=165.86 Aligned_cols=295 Identities=17% Similarity=0.156 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEE--EcchhhhhcccCccchHhh
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGW--ISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vli--l~P~~~L~~~~q~~~~~~~ 129 (444)
..+.+.+..+..+ +-++|++.||||||.- + .+++...|-...-+| .-|.+..+ --.+++
T Consensus 359 ~~R~~ll~~ir~n-~vvvivgETGSGKTTQ----------l---~QyL~edGY~~~GmIGcTQPRRvAA-----iSVAkr 419 (1042)
T KOG0924|consen 359 ACRDQLLSVIREN-QVVVIVGETGSGKTTQ----------L---AQYLYEDGYADNGMIGCTQPRRVAA-----ISVAKR 419 (1042)
T ss_pred HHHHHHHHHHhhC-cEEEEEecCCCCchhh----------h---HHHHHhcccccCCeeeecCchHHHH-----HHHHHH
Confidence 3677788888887 8899999999999966 2 334555553322233 34888877 455555
Q ss_pred h--cCCCC-ceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccc
Q psy7952 130 V--TGRSD-LYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSE 206 (444)
Q Consensus 130 l--~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~ 206 (444)
+ .++.+ +-.+..-..-.+.. .....|-+.|-+.|..+. + ....+.+.+.||+||||.=
T Consensus 420 Va~EM~~~lG~~VGYsIRFEdvT------------~~~T~IkymTDGiLLrEs---L--~d~~L~kYSviImDEAHER-- 480 (1042)
T KOG0924|consen 420 VAEEMGVTLGDTVGYSIRFEDVT------------SEDTKIKYMTDGILLRES---L--KDRDLDKYSVIIMDEAHER-- 480 (1042)
T ss_pred HHHHhCCccccccceEEEeeecC------------CCceeEEEeccchHHHHH---h--hhhhhhheeEEEechhhhc--
Confidence 5 22200 01222111111111 135677899988875321 1 1223557899999999983
Q ss_pred cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHH
Q psy7952 207 WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVK 286 (444)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (444)
.....-.+..++..+.. ..+.++|.+|||+. .+.+..+++ .-|........ |.+..........+++.
T Consensus 481 -slNtDilfGllk~~lar-RrdlKliVtSATm~---a~kf~nfFg-n~p~f~IpGRT------yPV~~~~~k~p~eDYVe 548 (1042)
T KOG0924|consen 481 -SLNTDILFGLLKKVLAR-RRDLKLIVTSATMD---AQKFSNFFG-NCPQFTIPGRT------YPVEIMYTKTPVEDYVE 548 (1042)
T ss_pred -ccchHHHHHHHHHHHHh-hccceEEEeecccc---HHHHHHHhC-CCceeeecCCc------cceEEEeccCchHHHHH
Confidence 21122223333333333 33588999999985 456777776 23322222222 22222222223334555
Q ss_pred HHHHHHhccCCC-CCceEEEEecccchHHHHHHHHHhh--------------------cCHHHHHHHHHHHhcCCccEEE
Q psy7952 287 EFIEKCLGKDNK-ANNCGIIYCRTREHTTDLADALRRK--------------------VNKHERSRVQESFMRGEINVIT 345 (444)
Q Consensus 287 ~~l~~~l~~~~~-~~~~~iVf~~s~~~~~~l~~~L~~~--------------------~~~~~r~~~~~~f~~g~~~vLv 345 (444)
..+.+.+..+.. ..+-++||....++.+..+..+... ++..-+.+++.....|..++||
T Consensus 549 aavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~Iv 628 (1042)
T KOG0924|consen 549 AAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIV 628 (1042)
T ss_pred HHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEE
Confidence 666666555443 4478999999998888877777665 5666666777666678889999
Q ss_pred EcCccccccccCCccEEEEeCC------------------CCCHHHHHHHhccCCCCCCceeEEEEeccc
Q psy7952 346 ATISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEH 397 (444)
Q Consensus 346 aT~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 397 (444)
||++++..+.+|++.+||..|. |-|-.+--||.|||||. .+|.|+-++...
T Consensus 629 ATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 629 ATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred eccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 9999999999999999998775 44777888999999999 588899888753
No 118
>KOG0923|consensus
Probab=99.81 E-value=1.5e-18 Score=166.60 Aligned_cols=296 Identities=15% Similarity=0.188 Sum_probs=187.6
Q ss_pred HHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCcc---ceeEEEcchhhhhcccCccchHhh
Q psy7952 53 LQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVR---SRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 53 ~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~---~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
+-.+.+.++... +-++|.+.||||||.- +|. ++...|-+ +++-+.-|.|..+ .-...+
T Consensus 269 ykdell~av~e~-QVLiI~GeTGSGKTTQ----------iPQ---yL~EaGytk~gk~IgcTQPRRVAA-----mSVAaR 329 (902)
T KOG0923|consen 269 YKDELLKAVKEH-QVLIIVGETGSGKTTQ----------IPQ---YLYEAGYTKGGKKIGCTQPRRVAA-----MSVAAR 329 (902)
T ss_pred hHHHHHHHHHhC-cEEEEEcCCCCCcccc----------ccH---HHHhcccccCCceEeecCcchHHH-----HHHHHH
Confidence 556677777777 8899999999999944 666 45555422 3456666988766 444444
Q ss_pred h--cCCCC-ceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccc
Q psy7952 130 V--TGRSD-LYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSE 206 (444)
Q Consensus 130 l--~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~ 206 (444)
. .++-. +..|..-+.-.++. ....-+=++|.++|. .. +.....+...++|||||||.
T Consensus 330 VA~EMgvkLG~eVGYsIRFEdcT------------SekTvlKYMTDGmLl----RE-fL~epdLasYSViiiDEAHE--- 389 (902)
T KOG0923|consen 330 VAEEMGVKLGHEVGYSIRFEDCT------------SEKTVLKYMTDGMLL----RE-FLSEPDLASYSVIIVDEAHE--- 389 (902)
T ss_pred HHHHhCcccccccceEEEecccc------------CcceeeeeecchhHH----HH-HhccccccceeEEEeehhhh---
Confidence 4 22200 02222221111111 234566799999874 22 22334567789999999998
Q ss_pred cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHH
Q psy7952 207 WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVK 286 (444)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (444)
...+..-.+..+..+.+. .++.+++.+|||+.- +.+..+++ ..|+ +..+..|-++...+...+.. .++-
T Consensus 390 RTL~TDILfgLvKDIar~-RpdLKllIsSAT~DA---ekFS~fFD-dapI--F~iPGRRyPVdi~Yt~~PEA----dYld 458 (902)
T KOG0923|consen 390 RTLHTDILFGLVKDIARF-RPDLKLLISSATMDA---EKFSAFFD-DAPI--FRIPGRRYPVDIFYTKAPEA----DYLD 458 (902)
T ss_pred hhhhhhHHHHHHHHHHhh-CCcceEEeeccccCH---HHHHHhcc-CCcE--EeccCcccceeeecccCCch----hHHH
Confidence 332222333444444443 445899999999854 45566653 2333 33333333333223222211 1222
Q ss_pred HHHHHHhccC-CCCCceEEEEecccchHHHHHHHHHhh-------------------cCHHHHHHHHHHHhcCCccEEEE
Q psy7952 287 EFIEKCLGKD-NKANNCGIIYCRTREHTTDLADALRRK-------------------VNKHERSRVQESFMRGEINVITA 346 (444)
Q Consensus 287 ~~l~~~l~~~-~~~~~~~iVf~~s~~~~~~l~~~L~~~-------------------~~~~~r~~~~~~f~~g~~~vLva 346 (444)
..+...+..+ ..+.+-+|||....++.+.+...|... ++.+.+..+++.--.|..+|++|
T Consensus 459 Aai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLA 538 (902)
T KOG0923|consen 459 AAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLA 538 (902)
T ss_pred HHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEe
Confidence 2222222222 125678999999988877776666555 77788888888777899999999
Q ss_pred cCccccccccCCccEEEEeCC------------------CCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 347 TISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 347 T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
|++++..+.|+++.+||+-|+ |-|..+-.||.|||||.| +|.|+-++.....
T Consensus 539 TNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 539 TNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY 608 (902)
T ss_pred ecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh
Confidence 999999999999999997665 447888899999999995 8889999985443
No 119
>KOG0920|consensus
Probab=99.79 E-value=2.4e-18 Score=175.34 Aligned_cols=308 Identities=18% Similarity=0.135 Sum_probs=192.8
Q ss_pred cC-chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCC-CccccccCCccceeEEEcchhhhhcccCccch
Q psy7952 49 FK-CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPP-GADFILNGNVRSRNGWISPILSSFYLRFRDDK 126 (444)
Q Consensus 49 ~~-t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~-~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~ 126 (444)
+| .+.+.+.++.+.++ +-+++.+.||+|||.- +|. +++.....+..-++++.-|.|--| -..
T Consensus 172 LPa~~~r~~Il~~i~~~-qVvvIsGeTGcGKTTQ----------vpQfiLd~~~~~~~~~~IicTQPRRIsA-----Isv 235 (924)
T KOG0920|consen 172 LPAYKMRDTILDAIEEN-QVVVISGETGCGKTTQ----------VPQFILDEAIESGAACNIICTQPRRISA-----ISV 235 (924)
T ss_pred CccHHHHHHHHHHHHhC-ceEEEeCCCCCCchhh----------hhHHHHHHHHhcCCCCeEEecCCchHHH-----HHH
Confidence 44 34566666777666 8999999999999955 333 122233344444677777998665 344
Q ss_pred Hhhh--cCCC-CceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccc
Q psy7952 127 TSIV--TGRS-DLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHC 203 (444)
Q Consensus 127 ~~~l--~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~ 203 (444)
.++. ..+. .+-.|..-.+-... ......+.+||.+.+. . .+.....+..+..||+||+|.
T Consensus 236 AeRVa~ER~~~~g~~VGYqvrl~~~------------~s~~t~L~fcTtGvLL----r-~L~~~~~l~~vthiivDEVHE 298 (924)
T KOG0920|consen 236 AERVAKERGESLGEEVGYQVRLESK------------RSRETRLLFCTTGVLL----R-RLQSDPTLSGVTHIIVDEVHE 298 (924)
T ss_pred HHHHHHHhccccCCeeeEEEeeecc------------cCCceeEEEecHHHHH----H-HhccCcccccCceeeeeeEEE
Confidence 4544 1110 01112111111111 1235789999988874 2 233345567889999999998
Q ss_pred ccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCce-----------EEE
Q psy7952 204 VSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF-----------YDV 272 (444)
Q Consensus 204 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~ 272 (444)
=.-. .+|- +-.++.++... ++.++|+||||+.. +.+..+++.. + .+......-|-.. |..
T Consensus 299 R~i~-~Dfl--Li~lk~lL~~~-p~LkvILMSAT~da---e~fs~YF~~~-p-vi~i~grtfpV~~~fLEDil~~~~~~~ 369 (924)
T KOG0920|consen 299 RSIN-TDFL--LILLKDLLPRN-PDLKVILMSATLDA---ELFSDYFGGC-P-VITIPGRTFPVKEYFLEDILSKTGYVS 369 (924)
T ss_pred ccCC-cccH--HHHHHHHhhhC-CCceEEEeeeecch---HHHHHHhCCC-c-eEeecCCCcchHHHHHHHHHHHhcccc
Confidence 3322 1222 22333444433 45999999999873 4455666522 2 1222221111100 000
Q ss_pred --------EEcc----------cchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----------
Q psy7952 273 --------IFDD----------LLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------- 323 (444)
Q Consensus 273 --------~~~~----------~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------- 323 (444)
.... ..+..+..+..++...... ...+.+|||.+...+...+.+.|...
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~--~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~i 447 (924)
T KOG0920|consen 370 EDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDER--EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAI 447 (924)
T ss_pred cccccccccccCccccccchhccccccHHHHHHHHHhcccC--CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEE
Confidence 0000 0011222333333333322 35789999999999999999999754
Q ss_pred ------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCC------------------CHHHHHHHhc
Q psy7952 324 ------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS------------------SIPAYYQESG 379 (444)
Q Consensus 324 ------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~------------------s~~~~~Qr~G 379 (444)
++.+++..+++..-.|..+||++|++++.+|.|+++.+||+.+.-+ |..+-.||.|
T Consensus 448 lplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~G 527 (924)
T KOG0920|consen 448 LPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRG 527 (924)
T ss_pred EeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcc
Confidence 7888999999998899999999999999999999999999766422 6777899999
Q ss_pred cCCCCCCceeEEEEecccchhh
Q psy7952 380 RAGRDGLQSYCRIYHSEHSKKS 401 (444)
Q Consensus 380 R~~R~g~~g~~~~~~~~~~~~~ 401 (444)
||||. ..|.|+.+++....+.
T Consensus 528 RAGRv-~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 528 RAGRV-RPGICYHLYTRSRYEK 548 (924)
T ss_pred cccCc-cCCeeEEeechhhhhh
Confidence 99999 8999999998765543
No 120
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.79 E-value=1.4e-17 Score=174.16 Aligned_cols=178 Identities=16% Similarity=0.096 Sum_probs=112.2
Q ss_pred CcEEEEeccCCc-chHHHHHHHhcCCCCeEEEecCCCCCCceEEEEE--cc-----cchhhHHHHHHHHHHHhccCCCCC
Q psy7952 229 IPIIALTATAEP-SVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIF--DD-----LLKDSYAHVKEFIEKCLGKDNKAN 300 (444)
Q Consensus 229 ~~~v~lSAT~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~l~~~l~~~~~~~ 300 (444)
..+|++|||+.- .... +.+.+|+..............+.. .+.. .. ......+.+.+.+..+. . .+
T Consensus 574 ~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~~~~~~~~~-~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~-~---~~ 647 (820)
T PRK07246 574 CKTYFVSATLQISPRVS-LADLLGFEEYLFHKIEKDKKQDQL-VVVDQDMPLVTETSDEVYAEEIAKRLEELK-Q---LQ 647 (820)
T ss_pred CeEEEEecccccCCCCc-HHHHcCCCccceecCCCChHHccE-EEeCCCCCCCCCCChHHHHHHHHHHHHHHH-h---cC
Confidence 357999999962 2223 677788754322211111111111 1111 11 11222335555555543 2 47
Q ss_pred ceEEEEecccchHHHHHHHHHhh-------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCC--ccEEEEeCCCCC-
Q psy7952 301 NCGIIYCRTREHTTDLADALRRK-------VNKHERSRVQESFMRGEINVITATISFGMGIDRQN--VRFVVHWGMPSS- 370 (444)
Q Consensus 301 ~~~iVf~~s~~~~~~l~~~L~~~-------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~--~~~Vi~~~~p~s- 370 (444)
++++|+++|.+..+.+++.|... -....+..++++|++++..||++|+.+.+|||+|. ...||....|..
T Consensus 648 g~~LVLFtS~~~l~~v~~~l~~~~~~~l~Qg~~~~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~ 727 (820)
T PRK07246 648 QPILVLFNSKKHLLAVSDLLDQWQVSHLAQEKNGTAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDN 727 (820)
T ss_pred CCEEEEECcHHHHHHHHHHHhhcCCcEEEeCCCccHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCC
Confidence 89999999999999999988643 11123567899999998999999999999999973 455677776631
Q ss_pred -----------------------------HHHHHHHhccCCCCCCceeEEEEeccc-chhhHHHHHhhccch
Q psy7952 371 -----------------------------IPAYYQESGRAGRDGLQSYCRIYHSEH-SKKSLEYVIKTDTST 412 (444)
Q Consensus 371 -----------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 412 (444)
...+.|.+||.-|...+.-+++++++. ..+.+.+.+-+.+|.
T Consensus 728 P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 728 PEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLAE 799 (820)
T ss_pred CCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCCC
Confidence 344689999999986543356666655 555666666666664
No 121
>KOG0385|consensus
Probab=99.77 E-value=9.9e-18 Score=163.64 Aligned_cols=312 Identities=15% Similarity=0.119 Sum_probs=198.3
Q ss_pred cCchHHHHHHHHHHc---cCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccc
Q psy7952 49 FKCELQKKAIRHILL---RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDD 125 (444)
Q Consensus 49 ~~t~~Q~~~~~~~~~---~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~ 125 (444)
++ +||.+-++++.. +.-+.|+.-..|-|||+- .|++++ |+.. ..-..|+. ||+||...|.+| ..
T Consensus 168 lr-~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~-yl~~----~~~~~GPf---LVi~P~StL~NW---~~ 234 (971)
T KOG0385|consen 168 LR-DYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLG-YLKG----RKGIPGPF---LVIAPKSTLDNW---MN 234 (971)
T ss_pred cc-hhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHH-HHHH----hcCCCCCe---EEEeeHhhHHHH---HH
Confidence 44 799999888774 336799999999999976 222222 1110 02224566 999999999844 34
Q ss_pred hHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccc
Q psy7952 126 KTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVS 205 (444)
Q Consensus 126 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~ 205 (444)
.+.+|... +++..++|+. .++....+++- ..+..+|+|+|+|+... -......-+++|+||||+|++-
T Consensus 235 Ef~rf~P~---l~~~~~~Gdk--~eR~~~~r~~~-~~~~fdV~iTsYEi~i~------dk~~lk~~~W~ylvIDEaHRiK 302 (971)
T KOG0385|consen 235 EFKRFTPS---LNVVVYHGDK--EERAALRRDIM-LPGRFDVCITSYEIAIK------DKSFLKKFNWRYLVIDEAHRIK 302 (971)
T ss_pred HHHHhCCC---cceEEEeCCH--HHHHHHHHHhh-ccCCCceEeehHHHHHh------hHHHHhcCCceEEEechhhhhc
Confidence 44555555 9999999976 44444444443 24589999999998642 2333444578999999999975
Q ss_pred ccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecC-----------------------
Q psy7952 206 EWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTS----------------------- 262 (444)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~----------------------- 262 (444)
... ..+.+.++.+.. ..-+++|+||-.+....+...+.+--|-......
T Consensus 303 N~~-------s~L~~~lr~f~~-~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~ 374 (971)
T KOG0385|consen 303 NEK-------SKLSKILREFKT-DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHK 374 (971)
T ss_pred chh-------hHHHHHHHHhcc-cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHh
Confidence 432 344455555554 4568999999887777666666543221111000
Q ss_pred ----------------CCCCCceEEEEEcc--cchhhHHHHH--------------------------------------
Q psy7952 263 ----------------TFRSNLFYDVIFDD--LLKDSYAHVK-------------------------------------- 286 (444)
Q Consensus 263 ----------------~~~~~~~~~~~~~~--~~~~~~~~~~-------------------------------------- 286 (444)
...|...+.+...- .....+..+.
T Consensus 375 vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ 454 (971)
T KOG0385|consen 375 VLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA 454 (971)
T ss_pred hhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC
Confidence 00011111111100 0111111110
Q ss_pred -------------------HHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHh
Q psy7952 287 -------------------EFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFM 337 (444)
Q Consensus 287 -------------------~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~ 337 (444)
.++.+++.+-...+++|+||........-+-+...-+ ++-++|...++.|.
T Consensus 455 ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn 534 (971)
T KOG0385|consen 455 EPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFN 534 (971)
T ss_pred CCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcC
Confidence 0111111111125777888877666666555544333 78899999999997
Q ss_pred cCC--c-cEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEE
Q psy7952 338 RGE--I-NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 393 (444)
Q Consensus 338 ~g~--~-~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 393 (444)
... . -.|++|.+.+.|||+-..++||.||..+++..-+|..-||.|-|+..-+.+|
T Consensus 535 ~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 535 APPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred CCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 543 3 3499999999999999999999999999999999999999999988765543
No 122
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1.5e-16 Score=161.92 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=94.6
Q ss_pred HHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhh
Q psy7952 37 TAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILS 116 (444)
Q Consensus 37 ~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~ 116 (444)
.++-++..|..+|. .|.-.--.+.+| -+..+.||.|||++|++ |+ .-....+.. |.+++|+..
T Consensus 72 rEa~~R~lGm~~yd--VQliGg~~Lh~G---~iaEM~TGEGKTLvA~l--------~a-~l~al~G~~---VhvvT~ndy 134 (913)
T PRK13103 72 REAGKRVMGMRHFD--VQLIGGMTLHEG---KIAEMRTGEGKTLVGTL--------AV-YLNALSGKG---VHVVTVNDY 134 (913)
T ss_pred HHHHHHHhCCCcch--hHHHhhhHhccC---ccccccCCCCChHHHHH--------HH-HHHHHcCCC---EEEEeCCHH
Confidence 45566667877644 787666666555 67999999999999544 44 111223333 489999999
Q ss_pred hhcccCccchHhhh-----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH---
Q psy7952 117 SFYLRFRDDKTSIV-----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV--- 188 (444)
Q Consensus 117 L~~~~q~~~~~~~l-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~--- 188 (444)
|| .+..+.+ .+| +.+..+.++....++...+ .++|++||...+. |+++..+..
T Consensus 135 LA-----~RD~e~m~~l~~~lG---l~v~~i~~~~~~~err~~Y--------~~dI~YGT~~e~g---FDYLrD~~~~~~ 195 (913)
T PRK13103 135 LA-----RRDANWMRPLYEFLG---LSVGIVTPFQPPEEKRAAY--------AADITYGTNNEFG---FDYLRDNMAFSL 195 (913)
T ss_pred HH-----HHHHHHHHHHhcccC---CEEEEECCCCCHHHHHHHh--------cCCEEEEcccccc---cchhhccceech
Confidence 99 6666665 445 9999999998888777766 4899999988875 344333322
Q ss_pred ---hhCCccEEEEecccccc
Q psy7952 189 ---RYNKLAYIVVDEAHCVS 205 (444)
Q Consensus 189 ---~~~~~~~iViDE~H~~~ 205 (444)
....++++||||+|.++
T Consensus 196 ~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 196 DDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred hhhcccccceeEechhhhee
Confidence 13678999999999873
No 123
>COG4889 Predicted helicase [General function prediction only]
Probab=99.75 E-value=4.2e-18 Score=167.97 Aligned_cols=337 Identities=15% Similarity=0.173 Sum_probs=192.6
Q ss_pred CCCCCcCCCCCCCCCHHHHHHHHHHHhCCcccCchHHHHHHHHHHcc---CCcEEEEccCCCcccccccccccceEEeCC
Q psy7952 18 SLTGNQQDRKGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLR---THDIFVSMPTGAVSLVGSVVSARSRVRIPP 94 (444)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~~~~~~~~ 94 (444)
.+..++++|..... .++...+.-. .... |.++|+.|+....++ +.+-=+.++||+|||++++ .+
T Consensus 134 ei~es~IDW~~f~p--~e~~~nl~l~-~~kk-~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL---------ki 200 (1518)
T COG4889 134 EIAESPIDWDIFDP--TELQDNLPLK-KPKK-PRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL---------KI 200 (1518)
T ss_pred HHhcCCCChhhcCc--cccccccccC-CCCC-CChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH---------HH
Confidence 44556788876553 4444444322 2333 348999999998875 2344567789999999832 11
Q ss_pred CccccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCCh-----------------hhHHHHHH
Q psy7952 95 GADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTK-----------------TENKAILE 156 (444)
Q Consensus 95 ~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~-----------------~~~~~~~~ 156 (444)
.+.+. ..++|+++|+.+|. .|.++.+ .....++....++++... .....++.
T Consensus 201 -sEala----~~~iL~LvPSIsLL-----sQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~ 270 (1518)
T COG4889 201 -SEALA----AARILFLVPSISLL-----SQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILS 270 (1518)
T ss_pred -HHHHh----hhheEeecchHHHH-----HHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHH
Confidence 11111 15679999999999 8899988 444344766667665322 11233444
Q ss_pred HHHh--cCCCeeEEEECCCccccccHHHHHHHH--HhhCCccEEEEecccccccc---C---CCcHHHH--HHHHHHHHh
Q psy7952 157 ELRL--VKPRIKLLYVTPERAVTESFHYLLQHL--VRYNKLAYIVVDEAHCVSEW---G---HDFRPTY--RRLGELRQF 224 (444)
Q Consensus 157 ~~~~--~~~~~~Iiv~Tpe~l~~~~~~~~~~~~--~~~~~~~~iViDE~H~~~~~---~---~~~~~~~--~~l~~~~~~ 224 (444)
.+.. ...+--|+++|++.+. ..... ..+..|++||+||+|+-... + +.|.... ..++.
T Consensus 271 ~~~~~~k~~~~~vvFsTYQSl~------~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa---- 340 (1518)
T COG4889 271 EMEHRQKANGLTVVFSTYQSLP------RIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKA---- 340 (1518)
T ss_pred HHHHhhccCCcEEEEEcccchH------HHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHH----
Confidence 3332 2456679999999974 22222 34678999999999997431 1 1111000 11111
Q ss_pred hCCCCcEEEEeccCCcchHHHHHHHhc--------CC-----------------------CCeEEEecCCCCCCc---eE
Q psy7952 225 TGNSIPIIALTATAEPSVKQDIISVLK--------FN-----------------------KPYKVFKTSTFRSNL---FY 270 (444)
Q Consensus 225 ~~~~~~~v~lSAT~~~~~~~~~~~~l~--------~~-----------------------~~~~~~~~~~~~~~~---~~ 270 (444)
.+.+.|||||.--... ....-. +. ..+.+..-......+ ..
T Consensus 341 ----~kRlYmTATPkiy~eS-~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~ 415 (1518)
T COG4889 341 ----AKRLYMTATPKIYSES-SKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQ 415 (1518)
T ss_pred ----HHhhhcccCchhhchh-hhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhh
Confidence 3457899997421110 000000 00 001111000000000 00
Q ss_pred EEEEcccchhhH---HHHHHHHHHHhccCC------------CCCceEEEEecccchHHHHHHHHHhh------------
Q psy7952 271 DVIFDDLLKDSY---AHVKEFIEKCLGKDN------------KANNCGIIYCRTREHTTDLADALRRK------------ 323 (444)
Q Consensus 271 ~~~~~~~~~~~~---~~~~~~l~~~l~~~~------------~~~~~~iVf~~s~~~~~~l~~~L~~~------------ 323 (444)
............ ..++-...-+..+.. .+-.+.|-||.+.++.+++++.+..-
T Consensus 416 ~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~ 495 (1518)
T COG4889 416 SVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDF 495 (1518)
T ss_pred hhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 000000000011 111111111111111 12346788999999999988877554
Q ss_pred -------------cCHHHHHHHHH---HHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCC-
Q psy7952 324 -------------VNKHERSRVQE---SFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL- 386 (444)
Q Consensus 324 -------------~~~~~r~~~~~---~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~- 386 (444)
|+..+|...+. .|...+++||-....+++|||+|.++.||++++-.|..+.+|.+||+.|...
T Consensus 496 ~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~g 575 (1518)
T COG4889 496 KNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKG 575 (1518)
T ss_pred CCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcC
Confidence 66667644333 3456789999999999999999999999999999999999999999999632
Q ss_pred c--eeEEE
Q psy7952 387 Q--SYCRI 392 (444)
Q Consensus 387 ~--g~~~~ 392 (444)
+ ||.++
T Consensus 576 K~yGYIIL 583 (1518)
T COG4889 576 KKYGYIIL 583 (1518)
T ss_pred CccceEEE
Confidence 2 55544
No 124
>KOG0387|consensus
Probab=99.72 E-value=8.6e-17 Score=157.86 Aligned_cols=316 Identities=14% Similarity=0.104 Sum_probs=203.9
Q ss_pred hHHHHHHHHHHc---cCCcEEEEccCCCcccccccccccceEEeCCCccccccC-CccceeEEEcchhhhhcccCccchH
Q psy7952 52 ELQKKAIRHILL---RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG-NVRSRNGWISPILSSFYLRFRDDKT 127 (444)
Q Consensus 52 ~~Q~~~~~~~~~---~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~-~~~~~vlil~P~~~L~~~~q~~~~~ 127 (444)
+||++.++++.+ .+..-|+.-..|-|||.-.+. | +..+... ....++|||||..-+. +-+
T Consensus 208 ~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiis-----F-----LaaL~~S~k~~~paLIVCP~Tii~------qW~ 271 (923)
T KOG0387|consen 208 PYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIIS-----F-----LAALHHSGKLTKPALIVCPATIIH------QWM 271 (923)
T ss_pred HHHHHHHHHHHHHHhccCCCeecccccCccchhHHH-----H-----HHHHhhcccccCceEEEccHHHHH------HHH
Confidence 599999888774 225678999999999966211 1 1223333 3446679999998887 555
Q ss_pred hhh-cCCCCceeEEEEeCCCChh---------hHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEE
Q psy7952 128 SIV-TGRSDLYQLELIVSGQTKT---------ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIV 197 (444)
Q Consensus 128 ~~l-~~~~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iV 197 (444)
..+ ... +.+.+..+++..... .+...+. +....+..|+++|++.+. ..........++|+|
T Consensus 272 ~E~~~w~-p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~--r~~~~~~~ilitty~~~r------~~~d~l~~~~W~y~I 342 (923)
T KOG0387|consen 272 KEFQTWW-PPFRVFILHGTGSGARYDASHSSHKKDKLLI--RKVATDGGILITTYDGFR------IQGDDLLGILWDYVI 342 (923)
T ss_pred HHHHHhC-cceEEEEEecCCcccccccchhhhhhhhhhe--eeecccCcEEEEehhhhc------ccCcccccccccEEE
Confidence 555 222 228888888876521 1111111 112345679999988863 222333445789999
Q ss_pred EeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecC--------------C
Q psy7952 198 VDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTS--------------T 263 (444)
Q Consensus 198 iDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~--------------~ 263 (444)
+||.|.+-.... .+...+..++. .+.+.+|+||..+....+...+.+-.|..+.... .
T Consensus 343 LDEGH~IrNpns-------~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Ggy 414 (923)
T KOG0387|consen 343 LDEGHRIRNPNS-------KISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGY 414 (923)
T ss_pred ecCcccccCCcc-------HHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheecccc
Confidence 999999866553 22222233333 6678999999887777666555432111100000 0
Q ss_pred -------------------------------------CCCCceEEEEE--------------------------------
Q psy7952 264 -------------------------------------FRSNLFYDVIF-------------------------------- 274 (444)
Q Consensus 264 -------------------------------------~~~~~~~~~~~-------------------------------- 274 (444)
..|.-.-.+.+
T Consensus 415 aNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~ 494 (923)
T KOG0387|consen 415 ANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLS 494 (923)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCcccee
Confidence 00000000000
Q ss_pred -------------------------ccc-chhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----
Q psy7952 275 -------------------------DDL-LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----- 323 (444)
Q Consensus 275 -------------------------~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----- 323 (444)
.+. ...+..-....+..++......+.++++|..++....-+...|...
T Consensus 495 Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysy 574 (923)
T KOG0387|consen 495 GIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSY 574 (923)
T ss_pred chHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceE
Confidence 000 0111123345555555555567889999999999999988888842
Q ss_pred ------cCHHHHHHHHHHHhcCCc-cE-EEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEE--E
Q psy7952 324 ------VNKHERSRVQESFMRGEI-NV-ITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI--Y 393 (444)
Q Consensus 324 ------~~~~~r~~~~~~f~~g~~-~v-LvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~ 393 (444)
.+...|..++++|.+++. .| |++|.+.+-|+|+..++.||.||+.+++.+-.|..-||=|.|+...+++ +
T Consensus 575 lRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL 654 (923)
T KOG0387|consen 575 LRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRL 654 (923)
T ss_pred EEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEE
Confidence 677899999999997753 44 9999999999999999999999999999999999999999999877655 4
Q ss_pred ecccchh
Q psy7952 394 HSEHSKK 400 (444)
Q Consensus 394 ~~~~~~~ 400 (444)
+.....+
T Consensus 655 ~t~gTIE 661 (923)
T KOG0387|consen 655 MTAGTIE 661 (923)
T ss_pred ecCCcHH
Confidence 4544433
No 125
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.72 E-value=1.6e-15 Score=161.62 Aligned_cols=180 Identities=18% Similarity=0.172 Sum_probs=118.4
Q ss_pred cEEEEeccCCcc-hHHHHHHHhcCCCC--eEEEecCCCC-CCceEEEEEccc-------chhhHHHHHHHHHHHhccCCC
Q psy7952 230 PIIALTATAEPS-VKQDIISVLKFNKP--YKVFKTSTFR-SNLFYDVIFDDL-------LKDSYAHVKEFIEKCLGKDNK 298 (444)
Q Consensus 230 ~~v~lSAT~~~~-~~~~~~~~l~~~~~--~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~l~~~l~~~~~ 298 (444)
.+|++|||+... ..+.+.+.+|+.+. .....++... .+....+..... .......+.+.+.+++..
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~--- 750 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKA--- 750 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHh---
Confidence 368999998743 23455677787542 1222222111 111111111111 122234555556555443
Q ss_pred CCceEEEEecccchHHHHHHHHHhh------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCC--ccEEEE
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQN--VRFVVH 364 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~--~~~Vi~ 364 (444)
.+++++|+++|.+..+.+++.|... +....|..+++.|++++-.||++|+.+++|||+|+ +.+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 4679999999999999999998643 12356889999999998899999999999999996 578888
Q ss_pred eCCCCC------------------------------HHHHHHHhccCCCCCCceeEEEEeccc-chhhHHHHHhhccch
Q psy7952 365 WGMPSS------------------------------IPAYYQESGRAGRDGLQSYCRIYHSEH-SKKSLEYVIKTDTST 412 (444)
Q Consensus 365 ~~~p~s------------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 412 (444)
...|.. ...+.|.+||+-|..++.-+++++++. ..+.+.+.+-+.+|.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP~ 909 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLPT 909 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCCC
Confidence 887641 334579999999987554456666655 566677777777764
No 126
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2.1e-15 Score=152.09 Aligned_cols=318 Identities=17% Similarity=0.144 Sum_probs=196.6
Q ss_pred HHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchh
Q psy7952 36 LTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPIL 115 (444)
Q Consensus 36 ~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~ 115 (444)
+.++.++.+|..+|+ .|.-..-.+..| -+..+.||-|||++|+ +|+.+..+...+. -|++...
T Consensus 67 vREA~~R~lG~r~yd--VQliGglvLh~G---~IAEMkTGEGKTLvAt--------LpayLnAL~GkgV----hVVTvNd 129 (925)
T PRK12903 67 AREATKRVLGKRPYD--VQIIGGIILDLG---SVAEMKTGEGKTITSI--------APVYLNALTGKGV----IVSTVNE 129 (925)
T ss_pred HHHHHHHHhCCCcCc--hHHHHHHHHhcC---CeeeecCCCCccHHHH--------HHHHHHHhcCCce----EEEecch
Confidence 446777778988644 788777777666 4699999999999954 4442332433333 5667777
Q ss_pred hhhcccCccchHhhh-----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH--
Q psy7952 116 SSFYLRFRDDKTSIV-----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV-- 188 (444)
Q Consensus 116 ~L~~~~q~~~~~~~l-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~-- 188 (444)
-|+ ....+.+ .+| +.+..+..+.....+...+ .+||+++|...|. |+++..++.
T Consensus 130 YLA-----~RDae~mg~vy~fLG---LsvG~i~~~~~~~~rr~aY--------~~DItYgTn~E~g---FDYLRDnm~~~ 190 (925)
T PRK12903 130 YLA-----ERDAEEMGKVFNFLG---LSVGINKANMDPNLKREAY--------ACDITYSVHSELG---FDYLRDNMVSS 190 (925)
T ss_pred hhh-----hhhHHHHHHHHHHhC---CceeeeCCCCChHHHHHhc--------cCCCeeecCcccc---hhhhhhccccc
Confidence 787 5666555 567 9999998888777766666 6899999988876 555554432
Q ss_pred ----hhCCccEEEEecccccc-ccC----------CCcHHHHHHHHHHHHhhCC-------CCcEEEEec----------
Q psy7952 189 ----RYNKLAYIVVDEAHCVS-EWG----------HDFRPTYRRLGELRQFTGN-------SIPIIALTA---------- 236 (444)
Q Consensus 189 ----~~~~~~~iViDE~H~~~-~~~----------~~~~~~~~~l~~~~~~~~~-------~~~~v~lSA---------- 236 (444)
-...+.+.||||+|.++ +.. ......|..+..+...+.. ..+.+.+|.
T Consensus 191 ~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l 270 (925)
T PRK12903 191 KEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFF 270 (925)
T ss_pred HHHhcCcccceeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHc
Confidence 13568999999999873 311 1111233333333332211 112233332
Q ss_pred --------------------------------------------------------------------------------
Q psy7952 237 -------------------------------------------------------------------------------- 236 (444)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (444)
T Consensus 271 ~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlA 350 (925)
T PRK12903 271 KLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLA 350 (925)
T ss_pred CCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeee
Confidence
Q ss_pred -------------------cCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEE--EcccchhhHHHHHHHHHHHhcc
Q psy7952 237 -------------------TAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI--FDDLLKDSYAHVKEFIEKCLGK 295 (444)
Q Consensus 237 -------------------T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~ 295 (444)
|.... ...+.+..+ ..+..-+..+|.+..... .......++..+.+.+.+..
T Consensus 351 sIT~QnfFr~Y~kLsGMTGTA~te-~~Ef~~iY~----l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~-- 423 (925)
T PRK12903 351 TITYQNFFRLFKKLSGMTGTAKTE-EQEFIDIYN----MRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVH-- 423 (925)
T ss_pred eehHHHHHHhcchhhccCCCCHHH-HHHHHHHhC----CCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHH--
Confidence 21110 011111111 011111222232222111 00112234444444444432
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHhh------cC--HHHHHHHHHHHhcC-CccEEEEcCccccccccCCcc------
Q psy7952 296 DNKANNCGIIYCRTREHTTDLADALRRK------VN--KHERSRVQESFMRG-EINVITATISFGMGIDRQNVR------ 360 (444)
Q Consensus 296 ~~~~~~~~iVf~~s~~~~~~l~~~L~~~------~~--~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gidi~~~~------ 360 (444)
..+.|+||.|.|++.++.++..|.+. ++ ..+++..+-. ..| ...|.|||++++||.||.--.
T Consensus 424 --~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~G 500 (925)
T PRK12903 424 --KKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELG 500 (925)
T ss_pred --hcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcC
Confidence 36889999999999999999999887 22 1222222222 345 567899999999999996222
Q ss_pred --EEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 361 --FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 361 --~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
+||....|.|.+---|-.||+||.|.+|.+..|++-+|.
T Consensus 501 GLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 501 GLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred CcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 899999999999999999999999999999888886543
No 127
>KOG0384|consensus
Probab=99.71 E-value=3.7e-17 Score=166.94 Aligned_cols=320 Identities=16% Similarity=0.150 Sum_probs=207.6
Q ss_pred cccCchHHHHHHHHHHc---cCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCc
Q psy7952 47 DSFKCELQKKAIRHILL---RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFR 123 (444)
Q Consensus 47 ~~~~t~~Q~~~~~~~~~---~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~ 123 (444)
..+| +||.+-+++++. +++++|+.-..|.|||.-.+.. +. |++.. ....|+. |+++|...+..|
T Consensus 369 ~~LR-dyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~f-l~-~l~~~----~~~~gpf---lvvvplst~~~W--- 435 (1373)
T KOG0384|consen 369 NELR-DYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITF-LS-YLFHS----LQIHGPF---LVVVPLSTITAW--- 435 (1373)
T ss_pred chhh-hhhcccchhHHHHHHhcccceehhhcCCCcchHHHHH-HH-HHHHh----hhccCCe---EEEeehhhhHHH---
Confidence 3456 799998887774 2289999999999999762221 11 11111 3345566 999999988844
Q ss_pred cchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhc---CCCeeEEEECCCccccccHHHHHHHHHhh--CCccEEEE
Q psy7952 124 DDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLV---KPRIKLLYVTPERAVTESFHYLLQHLVRY--NKLAYIVV 198 (444)
Q Consensus 124 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~--~~~~~iVi 198 (444)
...+..+. . .++.+++|+.........+.-...- .-..+++++|++.+. .....+ -.+.+++|
T Consensus 436 ~~ef~~w~-~---mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~L--------kDk~~L~~i~w~~~~v 503 (1373)
T KOG0384|consen 436 EREFETWT-D---MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVL--------KDKAELSKIPWRYLLV 503 (1373)
T ss_pred HHHHHHHh-h---hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHh--------ccHhhhccCCcceeee
Confidence 34445555 6 8899999988776555555433221 114789999988864 333333 35799999
Q ss_pred eccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecC----------------
Q psy7952 199 DEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTS---------------- 262 (444)
Q Consensus 199 DE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~---------------- 262 (444)
||||++-... ..+...+..+.- ..-+++|+||-.+....+..++.+..|.......
T Consensus 504 DeahrLkN~~-------~~l~~~l~~f~~-~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~ 575 (1373)
T KOG0384|consen 504 DEAHRLKNDE-------SKLYESLNQFKM-NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRK 575 (1373)
T ss_pred cHHhhcCchH-------HHHHHHHHHhcc-cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHH
Confidence 9999985322 222222333433 4468899998877766666665443221110000
Q ss_pred ---------------------CCCCCceEEEEEcccchhhH---------------------------------------
Q psy7952 263 ---------------------TFRSNLFYDVIFDDLLKDSY--------------------------------------- 282 (444)
Q Consensus 263 ---------------------~~~~~~~~~~~~~~~~~~~~--------------------------------------- 282 (444)
.........+.........+
T Consensus 576 L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi 655 (1373)
T KOG0384|consen 576 LQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLI 655 (1373)
T ss_pred HHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCcccc
Confidence 00000111111000000000
Q ss_pred -----------------HHHH---------HHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCH
Q psy7952 283 -----------------AHVK---------EFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNK 326 (444)
Q Consensus 283 -----------------~~~~---------~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~ 326 (444)
..+. -++.++|.+-...+++||||...+....-|++.|..+ +..
T Consensus 656 ~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrg 735 (1373)
T KOG0384|consen 656 KGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRG 735 (1373)
T ss_pred CcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcch
Confidence 0010 1122334443447899999999999999999999877 778
Q ss_pred HHHHHHHHHHhc---CCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEE--Eecccch
Q psy7952 327 HERSRVQESFMR---GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI--YHSEHSK 399 (444)
Q Consensus 327 ~~r~~~~~~f~~---g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~~~ 399 (444)
+.|+..++.|.. .....|+||.+.+.|||+-..++||.||..+++.+-+|.-.||.|-|+...+-+ +++....
T Consensus 736 elRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 736 ELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred HHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 999999999973 345569999999999999999999999999999999999999999999876543 5555543
No 128
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.71 E-value=4.2e-16 Score=158.72 Aligned_cols=122 Identities=19% Similarity=0.256 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCcc
Q psy7952 281 SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISF 350 (444)
Q Consensus 281 ~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~ 350 (444)
+.+.+.+.+.... ..+.+++|||++++.++.+++.|... ++..+|..+++.|+.|++.|+|||+.+
T Consensus 427 qi~~Ll~eI~~~~----~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L 502 (655)
T TIGR00631 427 QVDDLLSEIRQRV----ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLL 502 (655)
T ss_pred hHHHHHHHHHHHH----cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChh
Confidence 3344444444432 25789999999999999999999876 678999999999999999999999999
Q ss_pred ccccccCCccEEEEeC-----CCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 351 GMGIDRQNVRFVVHWG-----MPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 351 ~~Gidi~~~~~Vi~~~-----~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
++|+|+|++++||+++ .|.+...|+||+||+||. ..|.++++++..+......+.+
T Consensus 503 ~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 503 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred cCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 9999999999999888 799999999999999998 6899999998766544444433
No 129
>KOG0925|consensus
Probab=99.69 E-value=3.3e-15 Score=139.29 Aligned_cols=311 Identities=18% Similarity=0.156 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCC-ccccccCCccceeEEE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPG-ADFILNGNVRSRNGWI 111 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~-~~~l~~~~~~~~vlil 111 (444)
...+.+.+++.-. +|---|++-+-.++.+++-+++++.||+|||.- +|.. +....... .-|...
T Consensus 33 s~rY~~ilk~R~~---LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ----------iPq~~~~~~~~~~--~~v~CT 97 (699)
T KOG0925|consen 33 SQRYYDILKKRRE---LPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ----------IPQFVLEYELSHL--TGVACT 97 (699)
T ss_pred cHHHHHHHHHHhc---CchHHhHHHHHHHHhcCceEEEEecCCCCcccc----------CcHHHHHHHHhhc--cceeec
Confidence 4566777777633 342234444555555449999999999999955 3330 01111111 122555
Q ss_pred cchhhhhcccCccchHhhh------cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH
Q psy7952 112 SPILSSFYLRFRDDKTSIV------TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 185 (444)
-|.+..+ -....+. ..| ..|.....-.++....-+ .-++|.++|..+ ..
T Consensus 98 Qprrvaa-----msva~RVadEMDv~lG---~EVGysIrfEdC~~~~T~------------Lky~tDgmLlrE-----am 152 (699)
T KOG0925|consen 98 QPRRVAA-----MSVAQRVADEMDVTLG---EEVGYSIRFEDCTSPNTL------------LKYCTDGMLLRE-----AM 152 (699)
T ss_pred CchHHHH-----HHHHHHHHHHhccccc---hhccccccccccCChhHH------------HHHhcchHHHHH-----Hh
Confidence 5887665 3333333 233 222222222221111111 124455554211 01
Q ss_pred HHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCC
Q psy7952 186 HLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFR 265 (444)
Q Consensus 186 ~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (444)
....+...++||+||+|. ..-.-.-.+..++......+ +.++|.||||+... .+..+++ ..| .+..+....
T Consensus 153 s~p~l~~y~viiLDeahE---RtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a~---Kfq~yf~-n~P-ll~vpg~~P 223 (699)
T KOG0925|consen 153 SDPLLGRYGVIILDEAHE---RTLATDILMGLLKEVVRNRP-DLKLVVMSATLDAE---KFQRYFG-NAP-LLAVPGTHP 223 (699)
T ss_pred hCcccccccEEEechhhh---hhHHHHHHHHHHHHHHhhCC-CceEEEeecccchH---HHHHHhC-CCC-eeecCCCCc
Confidence 112356789999999998 22111222334444444445 58999999998654 4445553 334 333333222
Q ss_pred CCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh---------------cCHHHHH
Q psy7952 266 SNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK---------------VNKHERS 330 (444)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~---------------~~~~~r~ 330 (444)
..+ +...+...+..+.....+.++-... ..+-++||....++.+..++.+... +.+..+.
T Consensus 224 vEi---~Yt~e~erDylEaairtV~qih~~e--e~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP~~qq 298 (699)
T KOG0925|consen 224 VEI---FYTPEPERDYLEAAIRTVLQIHMCE--EPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYPAQQQ 298 (699)
T ss_pred eEE---EecCCCChhHHHHHHHHHHHHHhcc--CCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCchhhc
Confidence 222 2223334455555556555554443 4788999999999999998888755 4454444
Q ss_pred HHHHHHh---cC--CccEEEEcCccccccccCCccEEEEeCC------------------CCCHHHHHHHhccCCCCCCc
Q psy7952 331 RVQESFM---RG--EINVITATISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQ 387 (444)
Q Consensus 331 ~~~~~f~---~g--~~~vLvaT~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~ 387 (444)
.+++... .| ..+|+|+|++++..+-++++.+||+-|+ |-|..+-.||.||+||. .+
T Consensus 299 ~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~p 377 (699)
T KOG0925|consen 299 RIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RP 377 (699)
T ss_pred cccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CC
Confidence 4443322 12 3589999999999999999999997774 55888899999999998 78
Q ss_pred eeEEEEecccc
Q psy7952 388 SYCRIYHSEHS 398 (444)
Q Consensus 388 g~~~~~~~~~~ 398 (444)
|.|+.++..+-
T Consensus 378 GkcfrLYte~~ 388 (699)
T KOG0925|consen 378 GKCFRLYTEEA 388 (699)
T ss_pred CceEEeecHHh
Confidence 99999998543
No 130
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.69 E-value=2.2e-15 Score=151.11 Aligned_cols=178 Identities=14% Similarity=0.010 Sum_probs=116.8
Q ss_pred cEEEEeccCCcch------HHHHHHHhcCCCCeEEEecCCC----CCC--ceEEEEE----cccch--------------
Q psy7952 230 PIIALTATAEPSV------KQDIISVLKFNKPYKVFKTSTF----RSN--LFYDVIF----DDLLK-------------- 279 (444)
Q Consensus 230 ~~v~lSAT~~~~~------~~~~~~~l~~~~~~~~~~~~~~----~~~--~~~~~~~----~~~~~-------------- 279 (444)
.+|++|||+.-.. .+.+.+.+|++........+.. +.. ..|.... .+...
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 4699999998744 6888999998654222222222 222 1221100 00111
Q ss_pred hhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-------cC-HHHHHHHHHHHhc----CCccEEEEc
Q psy7952 280 DSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-------VN-KHERSRVQESFMR----GEINVITAT 347 (444)
Q Consensus 280 ~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-------~~-~~~r~~~~~~f~~----g~~~vLvaT 347 (444)
...+.+.+.+..++.. .++.++|.+.|....+.++..|... -. ...+...+++|+. |...||++|
T Consensus 453 ~~~~~~~~~~~~~~~~---~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 453 TWLENVSLSTAAILRK---AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKNRLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred hHHHHHHHHHHHHHHH---cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCccHHHHHHHHHHhhcCCCCcEEEeC
Confidence 1222355555555554 4779999999999999999999766 11 1245778999987 478999999
Q ss_pred Ccccccccc--------C--CccEEEEeCCCC-------------------------CHHHHHHHhccCCCCCCc--eeE
Q psy7952 348 ISFGMGIDR--------Q--NVRFVVHWGMPS-------------------------SIPAYYQESGRAGRDGLQ--SYC 390 (444)
Q Consensus 348 ~~~~~Gidi--------~--~~~~Vi~~~~p~-------------------------s~~~~~Qr~GR~~R~g~~--g~~ 390 (444)
+.+.+|||+ | .+++||....|. ....+.|.+||.-|.... --.
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~ 609 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR 609 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE
Confidence 999999999 3 478898887773 134468999999998665 445
Q ss_pred EEEecccchhhHHHHHhhcc
Q psy7952 391 RIYHSEHSKKSLEYVIKTDT 410 (444)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~ 410 (444)
++++++.-.+.+...+.+.+
T Consensus 610 i~ilD~R~~~~yg~~~~~~~ 629 (636)
T TIGR03117 610 IHMLDGRIHWPYMESWQESV 629 (636)
T ss_pred EEEEeCCCCchhHHHHHHHH
Confidence 67777665455555555443
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.67 E-value=1.6e-15 Score=153.87 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=94.5
Q ss_pred HHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchh
Q psy7952 36 LTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPIL 115 (444)
Q Consensus 36 ~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~ 115 (444)
+.++.++.+|..+++ .|.-..-.+.. .-+..+.||.|||++| .+|+.+..+ .+.. |-|++++.
T Consensus 65 vrEa~~R~lG~r~yd--vQlig~l~L~~---G~IaEm~TGEGKTL~a--------~l~ayl~aL-~G~~---VhVvT~Nd 127 (870)
T CHL00122 65 TREASFRTLGLRHFD--VQLIGGLVLND---GKIAEMKTGEGKTLVA--------TLPAYLNAL-TGKG---VHIVTVND 127 (870)
T ss_pred HHHHHHHHhCCCCCc--hHhhhhHhhcC---CccccccCCCCchHHH--------HHHHHHHHh-cCCc---eEEEeCCH
Confidence 446777778988644 78766555544 5789999999999994 445522223 2333 37889999
Q ss_pred hhhcccCccchHhhh-----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH--
Q psy7952 116 SSFYLRFRDDKTSIV-----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV-- 188 (444)
Q Consensus 116 ~L~~~~q~~~~~~~l-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~-- 188 (444)
.|+ ....+.+ .+| +.+..+.++.+..++...+ .+||+++|...+. |+++..++.
T Consensus 128 yLA-----~RD~e~m~pvy~~LG---Lsvg~i~~~~~~~err~aY--------~~DItYgTn~e~g---FDyLRDnm~~~ 188 (870)
T CHL00122 128 YLA-----KRDQEWMGQIYRFLG---LTVGLIQEGMSSEERKKNY--------LKDITYVTNSELG---FDYLRDNMALS 188 (870)
T ss_pred HHH-----HHHHHHHHHHHHHcC---CceeeeCCCCChHHHHHhc--------CCCCEecCCcccc---ccchhhccCcC
Confidence 999 4544444 667 9999998888887776666 6799999988776 444444432
Q ss_pred ----hhCCccEEEEeccccc
Q psy7952 189 ----RYNKLAYIVVDEAHCV 204 (444)
Q Consensus 189 ----~~~~~~~iViDE~H~~ 204 (444)
....+.+.||||+|.+
T Consensus 189 ~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 189 LSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred hHHhhccccceeeeecchhh
Confidence 2356899999999987
No 132
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.67 E-value=8.4e-15 Score=138.42 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=112.7
Q ss_pred CcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEec
Q psy7952 229 IPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCR 308 (444)
Q Consensus 229 ~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~ 308 (444)
.|+|++||||.+...+.-. ..-+.....+.........+... ....+.+...+.+... .+.+++|-+=
T Consensus 387 ~q~i~VSATPg~~E~e~s~-----~~vveQiIRPTGLlDP~ievRp~---~~QvdDL~~EI~~r~~----~~eRvLVTtL 454 (663)
T COG0556 387 PQTIYVSATPGDYELEQSG-----GNVVEQIIRPTGLLDPEIEVRPT---KGQVDDLLSEIRKRVA----KNERVLVTTL 454 (663)
T ss_pred CCEEEEECCCChHHHHhcc-----CceeEEeecCCCCCCCceeeecC---CCcHHHHHHHHHHHHh----cCCeEEEEee
Confidence 5799999999775433111 11111122222222222222222 2333444444444332 4789999999
Q ss_pred ccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCC-----CCCHHH
Q psy7952 309 TREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGM-----PSSIPA 373 (444)
Q Consensus 309 s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~-----p~s~~~ 373 (444)
|++.|+.+.+.|... .+.-+|.++++.++.|...|||+.+.+-+|+|+|.|..|..+|. ..|..+
T Consensus 455 TKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~S 534 (663)
T COG0556 455 TKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 534 (663)
T ss_pred hHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccch
Confidence 999999999999888 67789999999999999999999999999999999999988875 458999
Q ss_pred HHHHhccCCCCCCceeEEEEeccc
Q psy7952 374 YYQESGRAGRDGLQSYCRIYHSEH 397 (444)
Q Consensus 374 ~~Qr~GR~~R~g~~g~~~~~~~~~ 397 (444)
++|-+|||.|. -.|.++.+.+.-
T Consensus 535 LIQtIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 535 LIQTIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHHHHHhhc-cCCeEEEEchhh
Confidence 99999999998 578888887643
No 133
>KOG0951|consensus
Probab=99.67 E-value=6.8e-16 Score=157.74 Aligned_cols=341 Identities=14% Similarity=0.163 Sum_probs=225.0
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
+++|.++++.+.+.++++++.+|+|||||.+|..+++. .....+++++.|..+.+ ..++..+
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------------~~~~~~~vyi~p~~~i~-----~~~~~~w 1206 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------------PDTIGRAVYIAPLEEIA-----DEQYRDW 1206 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------------CccceEEEEecchHHHH-----HHHHHHH
Confidence 36899999999988789999999999999996544332 33345789999999999 8888877
Q ss_pred --cCC-CCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccccc
Q psy7952 131 --TGR-SDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEW 207 (444)
Q Consensus 131 --~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~ 207 (444)
+++ ..+..+..++|..+.+... ....+|+|+||++. +.+ + ....+++.|.||.|.+.+.
T Consensus 1207 ~~~f~~~~G~~~~~l~ge~s~~lkl---------~~~~~vii~tpe~~-----d~l-q---~iQ~v~l~i~d~lh~igg~ 1268 (1674)
T KOG0951|consen 1207 EKKFSKLLGLRIVKLTGETSLDLKL---------LQKGQVIISTPEQW-----DLL-Q---SIQQVDLFIVDELHLIGGV 1268 (1674)
T ss_pred HHhhccccCceEEecCCccccchHH---------hhhcceEEechhHH-----HHH-h---hhhhcceEeeehhhhhccc
Confidence 221 1347788888877655321 23578999999994 333 2 4557899999999998652
Q ss_pred -CCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCc-eEEEEEcccch--hhHH
Q psy7952 208 -GHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNL-FYDVIFDDLLK--DSYA 283 (444)
Q Consensus 208 -~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~ 283 (444)
|.-+.-... +..+...+.++.+++++|..+.+. ...++....-........|+.. ...+....... ....
T Consensus 1269 ~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana-----~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~ 1342 (1674)
T KOG0951|consen 1269 YGAVYEVICS-MRYIASQLEKKIRVVALSSSLANA-----RDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRML 1342 (1674)
T ss_pred CCceEEEEee-HHHHHHHHHhheeEEEeehhhccc-----hhhccccccceeecCcccCCCceeEEEEEeccchhHHHHH
Confidence 222222222 344444556668999999988653 2236665554455555555543 22222222111 1111
Q ss_pred HHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh--------------------------------cCHHHHHH
Q psy7952 284 HVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--------------------------------VNKHERSR 331 (444)
Q Consensus 284 ~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~--------------------------------~~~~~r~~ 331 (444)
...+..-..+......+++.+||++++++|..++..+-.. ++..+..-
T Consensus 1343 am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~i 1422 (1674)
T KOG0951|consen 1343 AMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEI 1422 (1674)
T ss_pred HhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHH
Confidence 1112222223333346889999999999999887765333 55666667
Q ss_pred HHHHHhcCCccEEEEcCccccccccCCccEEEEeC-----------CCCCHHHHHHHhccCCCCCCceeEEEEecccchh
Q psy7952 332 VQESFMRGEINVITATISFGMGIDRQNVRFVVHWG-----------MPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 400 (444)
Q Consensus 332 ~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~-----------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 400 (444)
+-..|..|.+.|+|...- -.|+-.. .+.||..| .+.++.++.|+.|+|.| .|.|+++.......
T Consensus 1423 v~~l~e~g~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~ 1497 (1674)
T KOG0951|consen 1423 VQQLFEAGAIQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKE 1497 (1674)
T ss_pred HHHHHhcCcEEEEEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHH
Confidence 777888999999887766 6677664 33344333 35579999999999988 47899999999999
Q ss_pred hHHHHHhhccchhHH-----------HHHH-HHhhHHHHHHHhhhceeee
Q psy7952 401 SLEYVIKTDTSTKRE-----------QLEL-KFKNYLSMLEYCEQGYFLV 438 (444)
Q Consensus 401 ~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~ 438 (444)
.++++...++|.+.- ++.. -+.+-.+-++|..-.|++.
T Consensus 1498 yykkfl~e~lPves~lq~~lhd~~n~ei~~~tienkqd~vd~lt~s~~yr 1547 (1674)
T KOG0951|consen 1498 YYKKFLYEPLPVESHLQHCLHDNFNAEIVTKTIENKQDAVDYLTWSFMYR 1547 (1674)
T ss_pred HHHHhccCcCchHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 999999999988633 2222 2444455555655555443
No 134
>KOG0389|consensus
Probab=99.64 E-value=2.8e-15 Score=147.19 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=116.3
Q ss_pred hHHHHHHHHHH---ccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHh
Q psy7952 52 ELQKKAIRHIL---LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTS 128 (444)
Q Consensus 52 ~~Q~~~~~~~~---~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~ 128 (444)
+||.--++++. ...-+.|+.-..|-|||.-++ + +-+.+...-..|++ |||||+..|-+| ...+.
T Consensus 402 dYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-a------FlayLkq~g~~gpH---LVVvPsSTleNW---lrEf~ 468 (941)
T KOG0389|consen 402 DYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-A------FLAYLKQIGNPGPH---LVVVPSSTLENW---LREFA 468 (941)
T ss_pred chhhhhHHHHHHHHHccccceehhhccCcchhHHH-H------HHHHHHHcCCCCCc---EEEecchhHHHH---HHHHH
Confidence 58888777765 232567999999999996622 1 11112223345677 999999999844 34455
Q ss_pred hhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccC
Q psy7952 129 IVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG 208 (444)
Q Consensus 129 ~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~ 208 (444)
.|+.. +++..++|.. .++.++...+.....+++|+++|+..+.+.. --+.+....+++++|+||.|.+-..+
T Consensus 469 kwCPs---l~Ve~YyGSq--~ER~~lR~~i~~~~~~ydVllTTY~la~~~k---dDRsflk~~~~n~viyDEgHmLKN~~ 540 (941)
T KOG0389|consen 469 KWCPS---LKVEPYYGSQ--DERRELRERIKKNKDDYDVLLTTYNLAASSK---DDRSFLKNQKFNYVIYDEGHMLKNRT 540 (941)
T ss_pred HhCCc---eEEEeccCcH--HHHHHHHHHHhccCCCccEEEEEeecccCCh---HHHHHHHhccccEEEecchhhhhccc
Confidence 55666 9999999876 6677777777766779999999999987533 22334455689999999999986654
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhc
Q psy7952 209 HDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK 251 (444)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~ 251 (444)
+ ..|..+..+ +. ...+++|+||-.+....+...+.
T Consensus 541 S---eRy~~LM~I----~A-n~RlLLTGTPLQNNL~ELiSLL~ 575 (941)
T KOG0389|consen 541 S---ERYKHLMSI----NA-NFRLLLTGTPLQNNLKELISLLA 575 (941)
T ss_pred h---HHHHHhccc----cc-cceEEeeCCcccccHHHHHHHHH
Confidence 2 334444433 22 44689999987766655544443
No 135
>KOG0390|consensus
Probab=99.64 E-value=2.3e-14 Score=144.21 Aligned_cols=313 Identities=14% Similarity=0.112 Sum_probs=184.5
Q ss_pred hHHHHHHHHHHcc---------CCcEEEEccCCCcccccccccccceEEeCCCccccccCCcc-----ceeEEEcchhhh
Q psy7952 52 ELQKKAIRHILLR---------THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVR-----SRNGWISPILSS 117 (444)
Q Consensus 52 ~~Q~~~~~~~~~~---------~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~-----~~vlil~P~~~L 117 (444)
|+|++.+.-+.++ ...+|+.-.+|+|||+..+.. +..+.+..+. .+.|||+|..-+
T Consensus 241 PHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~Isf----------lwtlLrq~P~~~~~~~k~lVV~P~sLv 310 (776)
T KOG0390|consen 241 PHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISF----------IWTLLRQFPQAKPLINKPLVVAPSSLV 310 (776)
T ss_pred chHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHH----------HHHHHHhCcCccccccccEEEccHHHH
Confidence 7999999877742 245788888999999873222 2223334333 688999998777
Q ss_pred hcccCccchHhhhcCCCCceeEEEEeCCCCh--hhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccE
Q psy7952 118 FYLRFRDDKTSIVTGRSDLYQLELIVSGQTK--TENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAY 195 (444)
Q Consensus 118 ~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~ 195 (444)
-+| .+.+..| .+...+....+.+.... .....++ .+....-...|.+.+.|.+. ..-.......+++
T Consensus 311 ~nW---kkEF~KW-l~~~~i~~l~~~~~~~~~w~~~~sil-~~~~~~~~~~vli~sye~~~------~~~~~il~~~~gl 379 (776)
T KOG0390|consen 311 NNW---KKEFGKW-LGNHRINPLDFYSTKKSSWIKLKSIL-FLGYKQFTTPVLIISYETAS------DYCRKILLIRPGL 379 (776)
T ss_pred HHH---HHHHHHh-ccccccceeeeecccchhhhhhHHHH-HhhhhheeEEEEeccHHHHH------HHHHHHhcCCCCe
Confidence 633 3444444 11123777777776653 1111111 11111123455666655542 2233445668999
Q ss_pred EEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEc
Q psy7952 196 IVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFD 275 (444)
Q Consensus 196 iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (444)
+|+||.|.+-.. -...+..+. ...- .+-|++|+||-.+....+...+++-.|..+......+..........
T Consensus 380 LVcDEGHrlkN~---~s~~~kaL~----~l~t-~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~ 451 (776)
T KOG0390|consen 380 LVCDEGHRLKNS---DSLTLKALS----SLKT-PRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRG 451 (776)
T ss_pred EEECCCCCccch---hhHHHHHHH----hcCC-CceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccc
Confidence 999999996332 122233333 2332 67899999998888877777777655543332221111111000000
Q ss_pred c------c---chhhHHHHHHHHHHHhccCCC--------CCceEEEEecccchHHHHHHHHHh---h------------
Q psy7952 276 D------L---LKDSYAHVKEFIEKCLGKDNK--------ANNCGIIYCRTREHTTDLADALRR---K------------ 323 (444)
Q Consensus 276 ~------~---~~~~~~~~~~~l~~~l~~~~~--------~~~~~iVf~~s~~~~~~l~~~L~~---~------------ 323 (444)
. . ...+..++.+++..++-.... ...-.+|||+-...-..++..|.. .
T Consensus 452 ~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~ 531 (776)
T KOG0390|consen 452 RDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELIT 531 (776)
T ss_pred cCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHH
Confidence 0 0 011233333333333222211 112345666544333333222221 0
Q ss_pred --------------------------------------------------------------------------------
Q psy7952 324 -------------------------------------------------------------------------------- 323 (444)
Q Consensus 324 -------------------------------------------------------------------------------- 323 (444)
T Consensus 532 ~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~ 611 (776)
T KOG0390|consen 532 KLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLF 611 (776)
T ss_pred HHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHH
Confidence
Q ss_pred -----------------cCHHHHHHHHHHHhcC--CccE-EEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCC
Q psy7952 324 -----------------VNKHERSRVQESFMRG--EINV-ITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 383 (444)
Q Consensus 324 -----------------~~~~~r~~~~~~f~~g--~~~v-LvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R 383 (444)
++..+|+.+++.|.+. ...| |.+|.++++||++-+.+.+|.+|+++++..-.|.++|+=|
T Consensus 612 e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~R 691 (776)
T KOG0390|consen 612 EQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWR 691 (776)
T ss_pred HHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhcc
Confidence 8899999999999854 3345 7778899999999999999999999999999999999999
Q ss_pred CCCceeEEEE
Q psy7952 384 DGLQSYCRIY 393 (444)
Q Consensus 384 ~g~~g~~~~~ 393 (444)
.|+..-|+++
T Consensus 692 dGQKk~v~iY 701 (776)
T KOG0390|consen 692 DGQKKPVYIY 701 (776)
T ss_pred CCCcceEEEE
Confidence 9998766553
No 136
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.64 E-value=1.8e-15 Score=123.95 Aligned_cols=110 Identities=31% Similarity=0.510 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCc
Q psy7952 280 DSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATIS 349 (444)
Q Consensus 280 ~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~ 349 (444)
.+...+.+.+... ...++++||||++.+.++.+++.|.+. ++..+|..+.+.|.++...+|++|++
T Consensus 12 ~k~~~i~~~i~~~----~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~ 87 (131)
T cd00079 12 EKLEALLELLKEH----LKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV 87 (131)
T ss_pred HHHHHHHHHHHhc----ccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh
Confidence 3444454544443 225789999999999999999999864 77899999999999999999999999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEE
Q psy7952 350 FGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 393 (444)
Q Consensus 350 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 393 (444)
+++|+|+|.+++||++++|++...++|++||++|.|+.|.++++
T Consensus 88 ~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 88 IARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999998887653
No 137
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.64 E-value=1.4e-14 Score=148.78 Aligned_cols=111 Identities=21% Similarity=0.268 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccc
Q psy7952 282 YAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFG 351 (444)
Q Consensus 282 ~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 351 (444)
...+.+.+.... ..+.+++|||++.+.++.+++.|... ++..+|..+++.|+.|.+.++|||+.++
T Consensus 432 ~~~L~~~L~~~~----~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~ 507 (652)
T PRK05298 432 VDDLLSEIRKRV----AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (652)
T ss_pred HHHHHHHHHHHH----hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh
Confidence 344444444432 25789999999999999999999876 6789999999999999999999999999
Q ss_pred cccccCCccEEEEeCC-----CCCHHHHHHHhccCCCCCCceeEEEEeccc
Q psy7952 352 MGIDRQNVRFVVHWGM-----PSSIPAYYQESGRAGRDGLQSYCRIYHSEH 397 (444)
Q Consensus 352 ~Gidi~~~~~Vi~~~~-----p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 397 (444)
+|+|+|++++||+++. |.+...|+||+||+||. ..|.++.+++..
T Consensus 508 rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 508 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 9999999999998874 78999999999999996 789999999843
No 138
>KOG0953|consensus
Probab=99.62 E-value=8.5e-15 Score=138.74 Aligned_cols=273 Identities=16% Similarity=0.172 Sum_probs=175.7
Q ss_pred CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeC
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVS 144 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~ 144 (444)
+-++-++||.||||.- +++.+...... ++.-|.+-|+ .+.+.++ +.| +.+..++|
T Consensus 192 kIi~H~GPTNSGKTy~-------------ALqrl~~aksG---vycGPLrLLA-----~EV~~r~na~g---ipCdL~TG 247 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR-------------ALQRLKSAKSG---VYCGPLRLLA-----HEVYDRLNALG---IPCDLLTG 247 (700)
T ss_pred eEEEEeCCCCCchhHH-------------HHHHHhhhccc---eecchHHHHH-----HHHHHHhhhcC---CCcccccc
Confidence 4567788999999977 35556666777 9999999999 8999999 888 99999998
Q ss_pred CCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHh
Q psy7952 145 GQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQF 224 (444)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~ 224 (444)
........ ....+..+-||.|++.- ...+++.||||+++|.+..+++... ..++..
T Consensus 248 eE~~~~~~--------~~~~a~hvScTVEM~sv------------~~~yeVAViDEIQmm~Dp~RGwAWT----rALLGl 303 (700)
T KOG0953|consen 248 EERRFVLD--------NGNPAQHVSCTVEMVSV------------NTPYEVAVIDEIQMMRDPSRGWAWT----RALLGL 303 (700)
T ss_pred ceeeecCC--------CCCcccceEEEEEEeec------------CCceEEEEehhHHhhcCcccchHHH----HHHHhh
Confidence 76432110 01346788899998741 1257899999999998765543322 122222
Q ss_pred hCCCCcEEEEeccCCcchHHHHHHHhcCCC-CeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceE
Q psy7952 225 TGNSIPIIALTATAEPSVKQDIISVLKFNK-PYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCG 303 (444)
Q Consensus 225 ~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 303 (444)
..+...+.+=- ...+.+...+.+.. .+.+.. ..|.. ... +.+.+...+.. ..++.++
T Consensus 304 ~AdEiHLCGep-----svldlV~~i~k~TGd~vev~~--YeRl~-------pL~-------v~~~~~~sl~n-lk~GDCv 361 (700)
T KOG0953|consen 304 AADEIHLCGEP-----SVLDLVRKILKMTGDDVEVRE--YERLS-------PLV-------VEETALGSLSN-LKPGDCV 361 (700)
T ss_pred hhhhhhccCCc-----hHHHHHHHHHhhcCCeeEEEe--ecccC-------cce-------ehhhhhhhhcc-CCCCCeE
Confidence 22223333322 23333344333222 221111 11110 000 00111111111 1134444
Q ss_pred EEEecccchHHHHHHHHHhh-----------cCHHHHHHHHHHHhc--CCccEEEEcCccccccccCCccEEEEeCCC--
Q psy7952 304 IIYCRTREHTTDLADALRRK-----------VNKHERSRVQESFMR--GEINVITATISFGMGIDRQNVRFVVHWGMP-- 368 (444)
Q Consensus 304 iVf~~s~~~~~~l~~~L~~~-----------~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p-- 368 (444)
+ |.|+++.-.+...+.+. ++++.|..--..|.+ ++.+||||||+++.|+|+ +++.||+++.-
T Consensus 362 V--~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Ky 438 (700)
T KOG0953|consen 362 V--AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKY 438 (700)
T ss_pred E--EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccC
Confidence 4 44566776676677666 899999999999986 899999999999999999 69999988753
Q ss_pred -------CCHHHHHHHhccCCCCCC---ceeEEEEecccchhhHHHHHhhccch
Q psy7952 369 -------SSIPAYYQESGRAGRDGL---QSYCRIYHSEHSKKSLEYVIKTDTST 412 (444)
Q Consensus 369 -------~s~~~~~Qr~GR~~R~g~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (444)
.+..+..|..|||||.|. .|. ++-+..+|...++..++.+...
T Consensus 439 sg~e~~~it~sqikQIAGRAGRf~s~~~~G~-vTtl~~eDL~~L~~~l~~p~ep 491 (700)
T KOG0953|consen 439 SGRETEDITVSQIKQIAGRAGRFGSKYPQGE-VTTLHSEDLKLLKRILKRPVEP 491 (700)
T ss_pred CcccceeccHHHHHHHhhcccccccCCcCce-EEEeeHhhHHHHHHHHhCCchH
Confidence 468889999999999864 355 4445567888888887755443
No 139
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.61 E-value=5e-15 Score=130.43 Aligned_cols=176 Identities=22% Similarity=0.350 Sum_probs=108.0
Q ss_pred hCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCc
Q psy7952 44 FGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFR 123 (444)
Q Consensus 44 ~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~ 123 (444)
+++.. ++++|.+++..+..+.+++++.+|||+|||.++. ..+ ...+... ...++++++|+..++
T Consensus 4 ~~~~~-~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~--------~~~-~~~~~~~-~~~~~l~~~p~~~~~----- 67 (201)
T smart00487 4 FGFEP-LRPYQKEAIEALLSGLRDVILAAPTGSGKTLAAL--------LPA-LEALKRG-KGKRVLVLVPTRELA----- 67 (201)
T ss_pred cCCCC-CCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHH--------HHH-HHHhccc-CCCcEEEEeCCHHHH-----
Confidence 34555 4689999999999754689999999999999732 222 2212222 134679999999999
Q ss_pred cchHhhh-c-CCCC-ceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEec
Q psy7952 124 DDKTSIV-T-GRSD-LYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDE 200 (444)
Q Consensus 124 ~~~~~~l-~-~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE 200 (444)
.+....+ . .... ......+.+........ .+. .+..+++++|++.+. ............++++|+||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~v~~~t~~~l~----~~~~~~~~~~~~~~~iIiDE 137 (201)
T smart00487 68 EQWAEELKKLGPSLGLKVVGLYGGDSKREQLR----KLE--SGKTDILVTTPGRLL----DLLENDLLELSNVDLVILDE 137 (201)
T ss_pred HHHHHHHHHHhccCCeEEEEEeCCcchHHHHH----HHh--cCCCCEEEeChHHHH----HHHHcCCcCHhHCCEEEEEC
Confidence 5555555 1 2111 13333344333222211 111 233499999999874 22222223455789999999
Q ss_pred cccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHh
Q psy7952 201 AHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVL 250 (444)
Q Consensus 201 ~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l 250 (444)
+|.+.... +...+ ..+....++..+++++||||++..........
T Consensus 138 ~h~~~~~~--~~~~~---~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 138 AHRLLDGG--FGDQL---EKLLKLLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred HHHHhcCC--cHHHH---HHHHHhCCccceEEEEecCCchhHHHHHHHhc
Confidence 99986432 33333 33444445568899999999877666555543
No 140
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=1.6e-13 Score=143.04 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=102.2
Q ss_pred EEEEeccCCcchHHHHHHHhcCCCCeEEEecCC-CCCCceEEEEE-c-----------cc-chhhHHHHHHHHHHHhccC
Q psy7952 231 IIALTATAEPSVKQDIISVLKFNKPYKVFKTST-FRSNLFYDVIF-D-----------DL-LKDSYAHVKEFIEKCLGKD 296 (444)
Q Consensus 231 ~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~-~-----------~~-~~~~~~~~~~~l~~~l~~~ 296 (444)
+|++|||+.+.. .+...+++..+........ ...+....+.. . .. .......+.+.+.++...
T Consensus 444 vil~SgTL~p~~--~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~- 520 (705)
T TIGR00604 444 VILASGTLSPLD--AFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKI- 520 (705)
T ss_pred EEEecccCCcHH--HHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhc-
Confidence 589999998843 4566677654332211111 11111111111 1 01 122334555555555444
Q ss_pred CCCCceEEEEecccchHHHHHHHHHhh----------------cCHHHHHHHHHHHhc----CCccEEEEc--Ccccccc
Q psy7952 297 NKANNCGIIYCRTREHTTDLADALRRK----------------VNKHERSRVQESFMR----GEINVITAT--ISFGMGI 354 (444)
Q Consensus 297 ~~~~~~~iVf~~s~~~~~~l~~~L~~~----------------~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gi 354 (444)
.++.++||++|....+++++.+... -...++..+++.|+. |...||+|+ ..+++||
T Consensus 521 --~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGI 598 (705)
T TIGR00604 521 --IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGI 598 (705)
T ss_pred --CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcc
Confidence 3688999999999999988877642 112467889999964 456799998 8999999
Q ss_pred ccCC--ccEEEEeCCCC-C------------------------------HHHHHHHhccCCCCCCceeEEEEeccc
Q psy7952 355 DRQN--VRFVVHWGMPS-S------------------------------IPAYYQESGRAGRDGLQSYCRIYHSEH 397 (444)
Q Consensus 355 di~~--~~~Vi~~~~p~-s------------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 397 (444)
|+++ ++.||.++.|. + .....|.+||+-|..++--++++++..
T Consensus 599 Df~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R 674 (705)
T TIGR00604 599 DFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKR 674 (705)
T ss_pred ccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehh
Confidence 9986 68899999886 1 123469999999986554355566543
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=3.7e-13 Score=136.65 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=95.8
Q ss_pred HHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchh
Q psy7952 36 LTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPIL 115 (444)
Q Consensus 36 ~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~ 115 (444)
+.++-++..|..+|+ .|.-.--.+.+| -+..+.||-|||++| .+|+.+..+. +.. |-|++++.
T Consensus 74 vREa~~R~lG~r~yd--VQliGgl~Lh~G---~IAEM~TGEGKTL~a--------tlpaylnAL~-Gkg---VhVVTvNd 136 (939)
T PRK12902 74 VREASKRVLGMRHFD--VQLIGGMVLHEG---QIAEMKTGEGKTLVA--------TLPSYLNALT-GKG---VHVVTVND 136 (939)
T ss_pred HHHHHHHHhCCCcch--hHHHhhhhhcCC---ceeeecCCCChhHHH--------HHHHHHHhhc-CCC---eEEEeCCH
Confidence 345667777888644 887766666655 679999999999994 4555222232 223 37888999
Q ss_pred hhhcccCccchHhhh-----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh-
Q psy7952 116 SSFYLRFRDDKTSIV-----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR- 189 (444)
Q Consensus 116 ~L~~~~q~~~~~~~l-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~- 189 (444)
.|| ....+.+ .+| +.+..+.++....++...+ .+||+++|+..+. |+++..++..
T Consensus 137 YLA-----~RDae~m~~vy~~LG---Ltvg~i~~~~~~~err~aY--------~~DItYgTn~e~g---FDYLRDnm~~~ 197 (939)
T PRK12902 137 YLA-----RRDAEWMGQVHRFLG---LSVGLIQQDMSPEERKKNY--------ACDITYATNSELG---FDYLRDNMATD 197 (939)
T ss_pred HHH-----HhHHHHHHHHHHHhC---CeEEEECCCCChHHHHHhc--------CCCeEEecCCccc---ccchhhhhccc
Confidence 999 5555554 567 9999998888777766655 7899999999886 4555555432
Q ss_pred -----hCCccEEEEeccccc
Q psy7952 190 -----YNKLAYIVVDEAHCV 204 (444)
Q Consensus 190 -----~~~~~~iViDE~H~~ 204 (444)
...+.+.||||+|.+
T Consensus 198 ~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 198 ISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred ccccccCccceEEEecccce
Confidence 256899999999987
No 142
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.58 E-value=4.6e-13 Score=138.63 Aligned_cols=177 Identities=19% Similarity=0.140 Sum_probs=111.4
Q ss_pred EEEEeccCCcc-hHHHHHHHhcCCC---CeEEEecCCCC-CCceEEEEE----cc-cchhhHHHHHHHHHHHhccCCCCC
Q psy7952 231 IIALTATAEPS-VKQDIISVLKFNK---PYKVFKTSTFR-SNLFYDVIF----DD-LLKDSYAHVKEFIEKCLGKDNKAN 300 (444)
Q Consensus 231 ~v~lSAT~~~~-~~~~~~~~l~~~~---~~~~~~~~~~~-~~~~~~~~~----~~-~~~~~~~~~~~~l~~~l~~~~~~~ 300 (444)
+|++|||+.+. ..+.+.+.+|++. ......++... .+....+.. .. ........+.+.+.+++. . +
T Consensus 459 vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~---~ 534 (697)
T PRK11747 459 AVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-K---H 534 (697)
T ss_pred EEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-c---C
Confidence 48889998762 3456667777763 22222222211 111111111 10 122334566666666655 2 4
Q ss_pred ceEEEEecccchHHHHHHHHHhh-------cCHHHHHHHHHHHh----cCCccEEEEcCccccccccCC--ccEEEEeCC
Q psy7952 301 NCGIIYCRTREHTTDLADALRRK-------VNKHERSRVQESFM----RGEINVITATISFGMGIDRQN--VRFVVHWGM 367 (444)
Q Consensus 301 ~~~iVf~~s~~~~~~l~~~L~~~-------~~~~~r~~~~~~f~----~g~~~vLvaT~~~~~Gidi~~--~~~Vi~~~~ 367 (444)
+.++|+++|.+..++++..|... -....+..+++.|+ .|+..||++|..+.+|||+|+ +++||..+.
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kL 614 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKI 614 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCchHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcC
Confidence 44899999999999999988643 12245677887776 467889999999999999986 788998887
Q ss_pred CCC------------------------------HHHHHHHhccCCCCCCceeEEEEeccc-chhhHHHHHhhccc
Q psy7952 368 PSS------------------------------IPAYYQESGRAGRDGLQSYCRIYHSEH-SKKSLEYVIKTDTS 411 (444)
Q Consensus 368 p~s------------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~ 411 (444)
|.. ...+.|.+||+-|...+--+++++++. ..+.+.+.+-+.+|
T Consensus 615 PF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 615 PFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhCC
Confidence 741 223479999999986554356666655 44555555555554
No 143
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.56 E-value=3.3e-13 Score=140.55 Aligned_cols=180 Identities=17% Similarity=0.215 Sum_probs=114.3
Q ss_pred cEEEEeccCCcchH-HHHHHHhcCCCCe-EEEecCCCC-CCceEEEEEccc--ch--hhHHHHHHHHHHHhccCCCCCce
Q psy7952 230 PIIALTATAEPSVK-QDIISVLKFNKPY-KVFKTSTFR-SNLFYDVIFDDL--LK--DSYAHVKEFIEKCLGKDNKANNC 302 (444)
Q Consensus 230 ~~v~lSAT~~~~~~-~~~~~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~~--~~--~~~~~~~~~l~~~l~~~~~~~~~ 302 (444)
.+|++|||+.+... ..+....+..... .....+... ............ .. .....+...+...+... +++
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~ 481 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKAS---PGG 481 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhc---CCC
Confidence 46999999877432 2244444444333 122222111 111111111111 11 34556666666666554 569
Q ss_pred EEEEecccchHHHHHHHHHhh--------cCHHHHHHHHHHHhcCCc-cEEEEcCccccccccCC--ccEEEEeCCCC--
Q psy7952 303 GIIYCRTREHTTDLADALRRK--------VNKHERSRVQESFMRGEI-NVITATISFGMGIDRQN--VRFVVHWGMPS-- 369 (444)
Q Consensus 303 ~iVf~~s~~~~~~l~~~L~~~--------~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gidi~~--~~~Vi~~~~p~-- 369 (444)
++||++|.+..+.+++.+... .+...+...++.|+.+.- .++|+|..+++|||+|+ +..||..+.|.
T Consensus 482 ~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~ 561 (654)
T COG1199 482 VLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPN 561 (654)
T ss_pred EEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCC
Confidence 999999999999999998853 445666688999986655 89999999999999985 57788888775
Q ss_pred ----------------------------CHHHHHHHhccCCCCCCceeEEEEeccc-chhhHHHHHhhccch
Q psy7952 370 ----------------------------SIPAYYQESGRAGRDGLQSYCRIYHSEH-SKKSLEYVIKTDTST 412 (444)
Q Consensus 370 ----------------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 412 (444)
-...+.|.+||+-|.....-++++++.. ....++..+...++.
T Consensus 562 p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~ 633 (654)
T COG1199 562 PDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPP 633 (654)
T ss_pred CCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCC
Confidence 2556789999999975443344555543 444466666655554
No 144
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.55 E-value=6.4e-14 Score=142.48 Aligned_cols=296 Identities=8% Similarity=-0.012 Sum_probs=169.3
Q ss_pred EEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCCh
Q psy7952 69 FVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTK 148 (444)
Q Consensus 69 ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~ 148 (444)
+..+.+|+|||.+ |+-.+ .+.+..++. +|+++|...|. .+..+++...++...+..+|++.+.
T Consensus 164 i~~~~~GSGKTev--------yl~~i-~~~l~~Gk~---vLvLvPEi~lt-----~q~~~rl~~~f~~~~v~~lhS~l~~ 226 (665)
T PRK14873 164 VWQALPGEDWARR--------LAAAA-AATLRAGRG---ALVVVPDQRDV-----DRLEAALRALLGAGDVAVLSAGLGP 226 (665)
T ss_pred HhhcCCCCcHHHH--------HHHHH-HHHHHcCCe---EEEEecchhhH-----HHHHHHHHHHcCCCcEEEECCCCCH
Confidence 3444469999999 54322 333334444 49999999999 7777888332222458889999998
Q ss_pred hhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCC-CcHHHHHHHHHHHHhhCC
Q psy7952 149 TENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH-DFRPTYRRLGELRQFTGN 227 (444)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~-~~~~~~~~l~~~~~~~~~ 227 (444)
.++...+..+. .+..+|+|||-.-+ +..+.++++||+||=|.-+-... ..+..-..+..++... .
T Consensus 227 ~~R~~~w~~~~--~G~~~IViGtRSAv-----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~-~ 292 (665)
T PRK14873 227 ADRYRRWLAVL--RGQARVVVGTRSAV-----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ-H 292 (665)
T ss_pred HHHHHHHHHHh--CCCCcEEEEcceeE-----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH-c
Confidence 88877776664 57789999995544 23567899999999997532111 1111122233333333 3
Q ss_pred CCcEEEEeccCCcchHHHHHHHhcCCCCeEEEe--cCCCCCCceEEEEEc-cc-----chh--hHHHHHHHHHHHhccCC
Q psy7952 228 SIPIIALTATAEPSVKQDIISVLKFNKPYKVFK--TSTFRSNLFYDVIFD-DL-----LKD--SYAHVKEFIEKCLGKDN 297 (444)
Q Consensus 228 ~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-~~-----~~~--~~~~~~~~l~~~l~~~~ 297 (444)
+.++|+.||||+-.....+... ......... .....|.+...-... +. ... -...+.+.+.+.++
T Consensus 293 ~~~lvLgSaTPSles~~~~~~g--~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~--- 367 (665)
T PRK14873 293 GCALLIGGHARTAEAQALVESG--WAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALE--- 367 (665)
T ss_pred CCcEEEECCCCCHHHHHHHhcC--cceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHh---
Confidence 4889999999976554432211 101000000 011122222111110 00 000 11233444444443
Q ss_pred CCCceEEEEecccchHHHHHH-----------------------------------------------------------
Q psy7952 298 KANNCGIIYCRTREHTTDLAD----------------------------------------------------------- 318 (444)
Q Consensus 298 ~~~~~~iVf~~s~~~~~~l~~----------------------------------------------------------- 318 (444)
.+ ++|||.|.+..+-.+..
T Consensus 368 -~g-qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~ee 445 (665)
T PRK14873 368 -HG-PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAE 445 (665)
T ss_pred -cC-cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHH
Confidence 35 88888776655433221
Q ss_pred HHHhhc-----CHHHHHHHHHHHhcCCccEEEEcC----ccccccccCCccEEEEeCCCC------------CHHHHHHH
Q psy7952 319 ALRRKV-----NKHERSRVQESFMRGEINVITATI----SFGMGIDRQNVRFVVHWGMPS------------SIPAYYQE 377 (444)
Q Consensus 319 ~L~~~~-----~~~~r~~~~~~f~~g~~~vLvaT~----~~~~Gidi~~~~~Vi~~~~p~------------s~~~~~Qr 377 (444)
.|.+.+ -..+++.+++.|. ++..|||+|+ ++. +++..|+..|... ....+.|.
T Consensus 446 eL~~~FP~~~V~r~d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qv 519 (665)
T PRK14873 446 ELGRAFPGVPVVTSGGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAA 519 (665)
T ss_pred HHHHHCCCCCEEEEChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHH
Confidence 111111 1113445778886 5899999999 665 3456665544321 24556899
Q ss_pred hccCCCCCCceeEEEEecccchhhHHHHHhhc
Q psy7952 378 SGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTD 409 (444)
Q Consensus 378 ~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 409 (444)
.||+||.+.+|.+++...++ ...++.+...+
T Consensus 520 agragr~~~~G~V~iq~~p~-~~~~~~l~~~d 550 (665)
T PRK14873 520 AALVRPRADGGQVVVVAESS-LPTVQALIRWD 550 (665)
T ss_pred HHhhcCCCCCCEEEEEeCCC-CHHHHHHHhCC
Confidence 99999998999988876444 35566665544
No 145
>KOG1000|consensus
Probab=99.55 E-value=2.4e-14 Score=133.91 Aligned_cols=302 Identities=14% Similarity=0.120 Sum_probs=180.8
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV- 130 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l- 130 (444)
|+|++-+...++...++++.-..|-|||+-|+.. +.+....+.- ||+||.....-| .+++.+|
T Consensus 201 PFQreGv~faL~RgGR~llADeMGLGKTiQAlaI----------A~yyraEwpl---liVcPAsvrftW---a~al~r~l 264 (689)
T KOG1000|consen 201 PFQREGVIFALERGGRILLADEMGLGKTIQALAI----------ARYYRAEWPL---LIVCPASVRFTW---AKALNRFL 264 (689)
T ss_pred chhhhhHHHHHhcCCeEEEecccccchHHHHHHH----------HHHHhhcCcE---EEEecHHHhHHH---HHHHHHhc
Confidence 5999999888875488999999999999874432 2223344555 999998776522 5666766
Q ss_pred cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCC
Q psy7952 131 TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHD 210 (444)
Q Consensus 131 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~ 210 (444)
..-.+ +.+..-..+...+ ..-...|.|.+++++. .+........+++||+||+|++-+...
T Consensus 265 ps~~p-i~vv~~~~D~~~~-----------~~t~~~v~ivSye~ls------~l~~~l~~~~~~vvI~DEsH~Lk~skt- 325 (689)
T KOG1000|consen 265 PSIHP-IFVVDKSSDPLPD-----------VCTSNTVAIVSYEQLS------LLHDILKKEKYRVVIFDESHMLKDSKT- 325 (689)
T ss_pred ccccc-eEEEecccCCccc-----------cccCCeEEEEEHHHHH------HHHHHHhcccceEEEEechhhhhccch-
Confidence 22211 3333333322211 1123467888877754 233334445699999999999854221
Q ss_pred cHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHH-------------------HHHHHhcCCCCeEEEec--C-------
Q psy7952 211 FRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQ-------------------DIISVLKFNKPYKVFKT--S------- 262 (444)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~-------------------~~~~~l~~~~~~~~~~~--~------- 262 (444)
.+.+........-.++|++|+||.-.-.. .-.++... ..+..... .
T Consensus 326 -----kr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~-k~vr~~~Dykg~tnl~EL 399 (689)
T KOG1000|consen 326 -----KRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDG-KQVRFCFDYKGCTNLEEL 399 (689)
T ss_pred -----hhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCc-cccceeeecCCCCCHHHH
Confidence 11222222222235699999996321000 00000000 00000000 0
Q ss_pred -------------------CCCCCceEEEE-Ecccchhh---------------------------HH----HHHHHHHH
Q psy7952 263 -------------------TFRSNLFYDVI-FDDLLKDS---------------------------YA----HVKEFIEK 291 (444)
Q Consensus 263 -------------------~~~~~~~~~~~-~~~~~~~~---------------------------~~----~~~~~l~~ 291 (444)
...+.....+. ........ +. .....+.+
T Consensus 400 ~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~e 479 (689)
T KOG1000|consen 400 AALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCE 479 (689)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHH
Confidence 00000000000 00000000 00 01122222
Q ss_pred Hhcc----CCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHh-cCCccE-EEEcCccccccc
Q psy7952 292 CLGK----DNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFM-RGEINV-ITATISFGMGID 355 (444)
Q Consensus 292 ~l~~----~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~-~g~~~v-LvaT~~~~~Gid 355 (444)
.+.. ....+.+.+|||+-....+.+...+.++ .++..|...-+.|. +.+.+| +++...++.|++
T Consensus 480 yi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt 559 (689)
T KOG1000|consen 480 YILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLT 559 (689)
T ss_pred HHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccccee
Confidence 2222 3346789999999999999999998887 78899999999998 446777 778888999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEe
Q psy7952 356 RQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 394 (444)
Q Consensus 356 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 394 (444)
+...+.|++...++++--++|.--|+.|.|+..-+.+.+
T Consensus 560 ~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 560 LTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred eeccceEEEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 999999999999999999999999999999876554433
No 146
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.54 E-value=1.4e-14 Score=107.03 Aligned_cols=62 Identities=39% Similarity=0.590 Sum_probs=60.2
Q ss_pred cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCC
Q psy7952 324 VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 385 (444)
Q Consensus 324 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 385 (444)
+++.+|..+++.|++++..+||||+++++|+|+|.+++||++++|+|...|.|++||++|.|
T Consensus 17 ~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 17 MSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 67889999999999999999999999999999999999999999999999999999999986
No 147
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.49 E-value=7.6e-14 Score=115.62 Aligned_cols=143 Identities=15% Similarity=0.232 Sum_probs=88.0
Q ss_pred CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeC
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVS 144 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~ 144 (444)
+++++.+|||+|||.+++.++. . +...+..+++++++|++.++ .+..+.+ ......+.+..+.+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~---------~-~~~~~~~~~~lv~~p~~~l~-----~~~~~~~~~~~~~~~~~~~~~~ 65 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPIL---------E-LLDSLKGGQVLVLAPTRELA-----NQVAERLKELFGEGIKVGYLIG 65 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHH---------H-HHhcccCCCEEEEcCcHHHH-----HHHHHHHHHHhhCCcEEEEEec
Confidence 4689999999999988332211 1 22223345779999999999 5555555 11110366777777
Q ss_pred CCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHh
Q psy7952 145 GQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQF 224 (444)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~ 224 (444)
.......... .....+|+++|++.+. ............++++|+||+|.+.... ..... ......
T Consensus 66 ~~~~~~~~~~------~~~~~~i~i~t~~~~~----~~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~---~~~~~~ 130 (144)
T cd00046 66 GTSIKQQEKL------LSGKTDIVVGTPGRLL----DELERLKLSLKKLDLLILDEAHRLLNQG--FGLLG---LKILLK 130 (144)
T ss_pred CcchhHHHHH------hcCCCCEEEECcHHHH----HHHHcCCcchhcCCEEEEeCHHHHhhcc--hHHHH---HHHHhh
Confidence 6554433211 2467899999999874 2222222234578999999999986533 11111 112223
Q ss_pred hCCCCcEEEEeccC
Q psy7952 225 TGNSIPIIALTATA 238 (444)
Q Consensus 225 ~~~~~~~v~lSAT~ 238 (444)
.....+++++||||
T Consensus 131 ~~~~~~~i~~saTp 144 (144)
T cd00046 131 LPKDRQVLLLSATP 144 (144)
T ss_pred CCccceEEEEeccC
Confidence 34558899999997
No 148
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.49 E-value=6.7e-14 Score=121.84 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHc------cCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccc
Q psy7952 52 ELQKKAIRHILL------RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDD 125 (444)
Q Consensus 52 ~~Q~~~~~~~~~------~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~ 125 (444)
++|.+++..+.+ ..+++++.+|||+|||.+|+..+ ..+.. +++|++|+..|+ .|
T Consensus 6 ~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~----------~~l~~-----~~l~~~p~~~l~-----~Q 65 (184)
T PF04851_consen 6 PYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALI----------LELAR-----KVLIVAPNISLL-----EQ 65 (184)
T ss_dssp HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHH----------HHHHC-----EEEEEESSHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhh----------hcccc-----ceeEecCHHHHH-----HH
Confidence 799999999995 13789999999999999843211 11222 669999999999 55
Q ss_pred hHhhh-cCCCCceeEEEE-----------eCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHH-------HHH
Q psy7952 126 KTSIV-TGRSDLYQLELI-----------VSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYL-------LQH 186 (444)
Q Consensus 126 ~~~~l-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~-------~~~ 186 (444)
....+ ............ ........... .......+++++|.+.+........ ...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 140 (184)
T PF04851_consen 66 WYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKS-----ESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSY 140 (184)
T ss_dssp HHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHH-----HHCBSS-SEEEEEHHHHHHHHHH---------GCH
T ss_pred HHHHHHHhhhhhhhhccccccccccccccccccccccccc-----ccccccccchhhHHHHHHhhcccccccccchhhhh
Confidence 55555 222111111110 11111111111 1124678899999888753210000 001
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCc
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEP 240 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~ 240 (444)
.......++||+||||++... ..+..+.+ .+...+|+|||||.+
T Consensus 141 ~~~~~~~~~vI~DEaH~~~~~-----~~~~~i~~-----~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 141 KLLKNKFDLVIIDEAHHYPSD-----SSYREIIE-----FKAAFILGLTATPFR 184 (184)
T ss_dssp HGGGGSESEEEEETGGCTHHH-----HHHHHHHH-----SSCCEEEEEESS-S-
T ss_pred hhccccCCEEEEehhhhcCCH-----HHHHHHHc-----CCCCeEEEEEeCccC
Confidence 122346799999999996431 11344433 333779999999963
No 149
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.48 E-value=1.5e-12 Score=134.25 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=57.9
Q ss_pred EEEEecccchHHHHHHHHHhh----------------cCHHHHHHHHHH----------------------Hhc----CC
Q psy7952 303 GIIYCRTREHTTDLADALRRK----------------VNKHERSRVQES----------------------FMR----GE 340 (444)
Q Consensus 303 ~iVf~~s~~~~~~l~~~L~~~----------------~~~~~r~~~~~~----------------------f~~----g~ 340 (444)
++|-+++++.+..++..|... .....|..+++. .++ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 577788888888888887655 222233332222 122 46
Q ss_pred ccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCc
Q psy7952 341 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ 387 (444)
Q Consensus 341 ~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~ 387 (444)
..|+|+|++.+.|+|+. .+.+|. -|.+++..+|+.||+.|.|..
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhcccccccC
Confidence 78999999999999984 555553 466799999999999998653
No 150
>KOG0392|consensus
Probab=99.46 E-value=1.3e-12 Score=133.97 Aligned_cols=92 Identities=22% Similarity=0.263 Sum_probs=82.5
Q ss_pred CCceEEEEecccchHHHHHHHHHhh-------------cCHHHHHHHHHHHhcC-CccE-EEEcCccccccccCCccEEE
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK-------------VNKHERSRVQESFMRG-EINV-ITATISFGMGIDRQNVRFVV 363 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~-------------~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~Gidi~~~~~Vi 363 (444)
.+++++|||.-+...+-+.+.|-+. .++.+|.++.++|.++ .+.+ |++|.+.+.|+|+.+.++||
T Consensus 1339 sqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVV 1418 (1549)
T KOG0392|consen 1339 SQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVV 1418 (1549)
T ss_pred ccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEE
Confidence 4679999999999998888877666 7899999999999988 6787 67889999999999999999
Q ss_pred EeCCCCCHHHHHHHhccCCCCCCceeE
Q psy7952 364 HWGMPSSIPAYYQESGRAGRDGLQSYC 390 (444)
Q Consensus 364 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~ 390 (444)
+++-.|++-.-+|..-||.|-|++..+
T Consensus 1419 FvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1419 FVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred EEecCCCchhhHHHHHHHHhhcCceee
Confidence 999999999999999999999987643
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=1.5e-11 Score=126.47 Aligned_cols=114 Identities=24% Similarity=0.200 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------cCH--HHHHHHHHHHhcC-CccEEEEcCccc
Q psy7952 281 SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------VNK--HERSRVQESFMRG-EINVITATISFG 351 (444)
Q Consensus 281 ~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------~~~--~~r~~~~~~f~~g-~~~vLvaT~~~~ 351 (444)
++..+.+.+.+. ...+.|+||-+.|++.++.++..|... ++. .+++.-+-. ..| ...|-|||+|++
T Consensus 613 K~~Aii~ei~~~----~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA-~AG~~GaVTIATNMAG 687 (1112)
T PRK12901 613 KYNAVIEEITEL----SEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVA-EAGQPGTVTIATNMAG 687 (1112)
T ss_pred HHHHHHHHHHHH----HHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHH-hcCCCCcEEEeccCcC
Confidence 344444444443 236899999999999999999999887 211 122221111 234 467899999999
Q ss_pred cccccC--------CccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 352 MGIDRQ--------NVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 352 ~Gidi~--------~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
||-||. +--+||-...+.|.+---|-.||+||.|.+|.+..|++-+|.
T Consensus 688 RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 688 RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999996 334788899999999999999999999999999999886654
No 152
>KOG0386|consensus
Probab=99.38 E-value=1.7e-12 Score=131.00 Aligned_cols=315 Identities=16% Similarity=0.162 Sum_probs=194.6
Q ss_pred ccCchHHHHHHHHHH---ccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCcc
Q psy7952 48 SFKCELQKKAIRHIL---LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRD 124 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~---~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~ 124 (444)
.++ +||...+.++. +|+=+-|+.-.+|-|||... |++.. |+.-. ....|+. +|+||+-.|.+| .
T Consensus 394 ~Lk-~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLit-YLmE~----K~~~GP~---LvivPlstL~NW---~ 460 (1157)
T KOG0386|consen 394 ELK-EYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLIT-YLMEH----KQMQGPF---LIIVPLSTLVNW---S 460 (1157)
T ss_pred CCc-hhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHH-HHHHH----cccCCCe---EEeccccccCCc---h
Confidence 356 79999887765 45456799999999999762 11111 11111 3345666 999999999955 2
Q ss_pred chHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccc
Q psy7952 125 DKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204 (444)
Q Consensus 125 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~ 204 (444)
..+..|+.. +....+.| +...+.....+++. ++.+|+++|++.+.. -...+..-++.|+||||-|+|
T Consensus 461 ~Ef~kWaPS---v~~i~YkG--tp~~R~~l~~qir~--gKFnVLlTtyEyiik------dk~lLsKI~W~yMIIDEGHRm 527 (1157)
T KOG0386|consen 461 SEFPKWAPS---VQKIQYKG--TPQQRSGLTKQQRH--GKFNVLLTTYEYIIK------DKALLSKISWKYMIIDEGHRM 527 (1157)
T ss_pred hhccccccc---eeeeeeeC--CHHHHhhHHHHHhc--ccceeeeeeHHHhcC------CHHHHhccCCcceeecccccc
Confidence 444444333 55544444 44555666666653 789999999888753 223333447899999999997
Q ss_pred cccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCC----------------e------------
Q psy7952 205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKP----------------Y------------ 256 (444)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~----------------~------------ 256 (444)
... ...+...+.......+.+++|+||-.+....+...+.+--| +
T Consensus 528 KNa-------~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteE 600 (1157)
T KOG0386|consen 528 KNA-------ICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEE 600 (1157)
T ss_pred cch-------hhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccch
Confidence 542 13333333322223456788888654433333333221100 0
Q ss_pred --------------------------------------------------------EEEecC-----CCC----------
Q psy7952 257 --------------------------------------------------------KVFKTS-----TFR---------- 265 (444)
Q Consensus 257 --------------------------------------------------------~~~~~~-----~~~---------- 265 (444)
.+.... ..+
T Consensus 601 EtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLR 680 (1157)
T KOG0386|consen 601 ETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLR 680 (1157)
T ss_pred HHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHH
Confidence 000000 000
Q ss_pred -----CCce----EEE--EEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------c
Q psy7952 266 -----SNLF----YDV--IFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------V 324 (444)
Q Consensus 266 -----~~~~----~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~ 324 (444)
|..+ ..+ ......-.......+++...+-+-...+++++.||....-..-+.+.|.-. .
T Consensus 681 KiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~T 760 (1157)
T KOG0386|consen 681 KLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQT 760 (1157)
T ss_pred HhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCc
Confidence 0000 000 000001111122234555555555557999999998877666666666544 7
Q ss_pred CHHHHHHHHHHHhcC--C-ccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEec
Q psy7952 325 NKHERSRVQESFMRG--E-INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHS 395 (444)
Q Consensus 325 ~~~~r~~~~~~f~~g--~-~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 395 (444)
...+|-..++.|..- . ..+|.+|...+.|+|+...+.||.||..+++..+.|+--||-|.|+...+-++.-
T Consensus 761 K~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 761 KVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred chhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 788999999999733 2 3459999999999999999999999999999999999999999998877665543
No 153
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.35 E-value=3.5e-12 Score=95.02 Aligned_cols=62 Identities=37% Similarity=0.599 Sum_probs=59.4
Q ss_pred cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCC
Q psy7952 324 VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 385 (444)
Q Consensus 324 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 385 (444)
+++.+|...++.|..+...+|++|+++++|+|+|++++||.+++|.+...|.|++||++|.|
T Consensus 21 ~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 21 LSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 67888999999999999999999999999999999999999999999999999999999975
No 154
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.32 E-value=1e-10 Score=124.55 Aligned_cols=289 Identities=13% Similarity=0.136 Sum_probs=155.9
Q ss_pred CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeC
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVS 144 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~ 144 (444)
+..+|+--||||||+++.-+ ...+......++|+||+-++.|- .|....+ ..+....... .
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~----------A~~l~~~~~~~~v~fvvDR~dLd-----~Q~~~~f~~~~~~~~~~~---~ 335 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKL----------ARLLLELPKNPKVLFVVDRKDLD-----DQTSDEFQSFGKVAFNDP---K 335 (962)
T ss_pred CceEEEeecCCchHHHHHHH----------HHHHHhccCCCeEEEEechHHHH-----HHHHHHHHHHHHhhhhcc---c
Confidence 45899999999999993321 22244445667889999999999 4455544 2220001111 2
Q ss_pred CCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH---HhhCCccEEEEeccccccccCCCcHHHHHHHHHH
Q psy7952 145 GQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL---VRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGEL 221 (444)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~---~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~ 221 (444)
..+.. +..+.+.. ....|+|+|.++|.. ..... ....+=-+||+||||+-- .| ..-.. +
T Consensus 336 ~~s~~---~Lk~~l~~--~~~~ii~TTIQKf~~-----~~~~~~~~~~~~~~ivvI~DEaHRSQ-~G----~~~~~---~ 397 (962)
T COG0610 336 AESTS---ELKELLED--GKGKIIVTTIQKFNK-----AVKEDELELLKRKNVVVIIDEAHRSQ-YG----ELAKL---L 397 (962)
T ss_pred ccCHH---HHHHHHhc--CCCcEEEEEecccch-----hhhcccccccCCCcEEEEEechhhcc-cc----HHHHH---H
Confidence 22222 22233322 355899999999853 22111 111222478999999932 23 11122 2
Q ss_pred HHhhCCCCcEEEEeccCCcchHHH-HHHHhcCCCCeEEEec-CCCC----CCceEEEE-EcccchhhH------------
Q psy7952 222 RQFTGNSIPIIALTATAEPSVKQD-IISVLKFNKPYKVFKT-STFR----SNLFYDVI-FDDLLKDSY------------ 282 (444)
Q Consensus 222 ~~~~~~~~~~v~lSAT~~~~~~~~-~~~~l~~~~~~~~~~~-~~~~----~~~~~~~~-~~~~~~~~~------------ 282 (444)
...+++ +.++++|+||.-..... ....+| ..+....- ...+ ..+.|... .........
T Consensus 398 ~~~~~~-a~~~gFTGTPi~~~d~~tt~~~fg--~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (962)
T COG0610 398 KKALKK-AIFIGFTGTPIFKEDKDTTKDVFG--DYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIE 474 (962)
T ss_pred HHHhcc-ceEEEeeCCccccccccchhhhhc--ceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHh
Confidence 334555 88999999997544433 122222 22111111 0001 01222221 000000000
Q ss_pred ---------------------------H-HHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----------
Q psy7952 283 ---------------------------A-HVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------- 323 (444)
Q Consensus 283 ---------------------------~-~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------- 323 (444)
. ...+....... ....+.++++.+.++..+..+++.....
T Consensus 475 ~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~-~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~ 553 (962)
T COG0610 475 EITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKK-EEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLE 553 (962)
T ss_pred hhHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHh-hcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhh
Confidence 0 01112222222 2335678888888887555444443222
Q ss_pred ---------------------cCHHHHHHHHHHH--hcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhcc
Q psy7952 324 ---------------------VNKHERSRVQESF--MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380 (444)
Q Consensus 324 ---------------------~~~~~r~~~~~~f--~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR 380 (444)
.....+.....+| .....++||.++++-.|+|.|.++++. +|.|.--..++|.+.|
T Consensus 554 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisR 632 (962)
T COG0610 554 GAIKDYNTEFETDFDKKQSHAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISR 632 (962)
T ss_pred hHHHHHHhhcccchhhhhhhHHHHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHH
Confidence 1122333444443 356789999999999999999888877 5677888889999999
Q ss_pred CCCC--C--CceeEEEEec
Q psy7952 381 AGRD--G--LQSYCRIYHS 395 (444)
Q Consensus 381 ~~R~--g--~~g~~~~~~~ 395 (444)
++|. + ..|..+.|..
T Consensus 633 tNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 633 TNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hccCCCCCCCCcEEEECcc
Confidence 9995 3 2355444443
No 155
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.24 E-value=1.3e-10 Score=117.24 Aligned_cols=288 Identities=15% Similarity=0.111 Sum_probs=160.0
Q ss_pred CcEEEEccCCCcccccccccccceEEeCCCccccccC--CccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEE
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG--NVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELI 142 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~--~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~ 142 (444)
.-.+|.+|.|||||.+ . +.. +... ....+++++...++|+ .+...++ ..+-+++....-
T Consensus 50 ~V~vVRSpMGTGKTta--------L-i~w----Lk~~l~~~~~~VLvVShRrSL~-----~sL~~rf~~~~l~gFv~Y~d 111 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTA--------L-IRW----LKDALKNPDKSVLVVSHRRSLT-----KSLAERFKKAGLSGFVNYLD 111 (824)
T ss_pred CeEEEECCCCCCcHHH--------H-HHH----HHHhccCCCCeEEEEEhHHHHH-----HHHHHHHhhcCCCcceeeec
Confidence 3468999999999977 1 222 3222 3445779999999999 7888887 443111221111
Q ss_pred eCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHH----H
Q psy7952 143 VSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRR----L 218 (444)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~----l 218 (444)
..+.... ...++-+++..+.+. .+. ...+.+.++||+||+-.....- +.+.+.. +
T Consensus 112 ~~~~~i~------------~~~~~rLivqIdSL~-----R~~--~~~l~~yDvVIIDEv~svL~qL--~S~Tm~~~~~v~ 170 (824)
T PF02399_consen 112 SDDYIID------------GRPYDRLIVQIDSLH-----RLD--GSLLDRYDVVIIDEVMSVLNQL--FSPTMRQREEVD 170 (824)
T ss_pred ccccccc------------ccccCeEEEEehhhh-----hcc--cccccccCEEEEehHHHHHHHH--hHHHHhhHHHHH
Confidence 1111110 123567888877763 111 2235568999999997664311 2121111 2
Q ss_pred HHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEE---EEEcc-----------cc---hh-
Q psy7952 219 GELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYD---VIFDD-----------LL---KD- 280 (444)
Q Consensus 219 ~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~~---~~- 280 (444)
..+.....+...+|++-|++.....+.+... .-.+++.++......+..... ....- .. +.
T Consensus 171 ~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~-Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~ 249 (824)
T PF02399_consen 171 NLLKELIRNAKTVIVMDADLNDQTVDFLASC-RPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTS 249 (824)
T ss_pred HHHHHHHHhCCeEEEecCCCCHHHHHHHHHh-CCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccC
Confidence 2233334455779999999999888776654 334555555444222211000 00000 00 00
Q ss_pred -------------hH-HHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------cCHHHHHHHHHHHhcCC
Q psy7952 281 -------------SY-AHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------VNKHERSRVQESFMRGE 340 (444)
Q Consensus 281 -------------~~-~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------~~~~~r~~~~~~f~~g~ 340 (444)
.. .....+...+.. ....++++-||++|...++.+++..... ++......-.+.+ ++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~tF~~~L~~-~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~~W--~~ 326 (824)
T PF02399_consen 250 PTPKHSPDPTATAAISNDETTFFSELLA-RLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVESW--KK 326 (824)
T ss_pred CCcCCCCccccccccccchhhHHHHHHH-HHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccccc--cc
Confidence 00 000111111111 1125788899999999888888777665 1111111112222 56
Q ss_pred ccEEEEcCccccccccCCcc--EEEEeCCC----CCHHHHHHHhccCCCCCCceeEEEEeccc
Q psy7952 341 INVITATISFGMGIDRQNVR--FVVHWGMP----SSIPAYYQESGRAGRDGLQSYCRIYHSEH 397 (444)
Q Consensus 341 ~~vLvaT~~~~~Gidi~~~~--~Vi~~~~p----~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 397 (444)
.+|++=|++++.|+++...+ .++.|=.| .+..+..|++||+ |.-.....+++++..
T Consensus 327 ~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 327 YDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred eeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 89999999999999987544 35544223 3566789999999 544556667777644
No 156
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.20 E-value=1e-11 Score=99.46 Aligned_cols=134 Identities=14% Similarity=0.044 Sum_probs=71.9
Q ss_pred CcEEEEccCCCcccccccccccceEEeCC-CccccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEe
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPP-GADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIV 143 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~-~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~ 143 (444)
+--++...||+|||.- .+|. +.+.+.++. |+|++.||+.++ .+..+.+ ... +...
T Consensus 5 ~~~~~d~hpGaGKTr~---------vlp~~~~~~i~~~~---rvLvL~PTRvva-----~em~~aL~~~~---~~~~--- 61 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRR---------VLPEIVREAIKRRL---RVLVLAPTRVVA-----EEMYEALKGLP---VRFH--- 61 (148)
T ss_dssp EEEEEE--TTSSTTTT---------HHHHHHHHHHHTT-----EEEEESSHHHH-----HHHHHHTTTSS---EEEE---
T ss_pred ceeEEecCCCCCCccc---------ccHHHHHHHHHccC---eEEEecccHHHH-----HHHHHHHhcCC---cccC---
Confidence 4568999999999986 2443 112233334 459999999999 7777777 333 3322
Q ss_pred CCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHH
Q psy7952 144 SGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQ 223 (444)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~ 223 (444)
....... ..++.-|-++|...+ ..++.......++++||+||||......-.++.. + +.+.
T Consensus 62 t~~~~~~----------~~g~~~i~vMc~at~-----~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~---l-~~~~ 122 (148)
T PF07652_consen 62 TNARMRT----------HFGSSIIDVMCHATY-----GHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGY---L-RELA 122 (148)
T ss_dssp STTSS--------------SSSSEEEEEHHHH-----HHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHH---H-HHHH
T ss_pred ceeeecc----------ccCCCcccccccHHH-----HHHhcCcccccCccEEEEeccccCCHHHHhhhee---H-HHhh
Confidence 1111110 124566778886664 3344444556789999999999854322112221 1 1122
Q ss_pred hhCCCCcEEEEeccCCcch
Q psy7952 224 FTGNSIPIIALTATAEPSV 242 (444)
Q Consensus 224 ~~~~~~~~v~lSAT~~~~~ 242 (444)
. .....+|+|||||+...
T Consensus 123 ~-~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 123 E-SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp H-TTS-EEEEEESS-TT--
T ss_pred h-ccCeeEEEEeCCCCCCC
Confidence 2 22367999999998864
No 157
>KOG0388|consensus
Probab=99.18 E-value=3e-10 Score=110.98 Aligned_cols=93 Identities=19% Similarity=0.211 Sum_probs=82.4
Q ss_pred CCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccE-EEEcCccccccccCCccEEEEe
Q psy7952 297 NKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINV-ITATISFGMGIDRQNVRFVVHW 365 (444)
Q Consensus 297 ~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~v-LvaT~~~~~Gidi~~~~~Vi~~ 365 (444)
...++++++|+...+...-+.+.|..+ ...++|..++..|....+-| |++|.+.+.|||+...++||+|
T Consensus 1041 kaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFY 1120 (1185)
T KOG0388|consen 1041 KAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFY 1120 (1185)
T ss_pred hcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEe
Confidence 346889999999888888888888766 66789999999999877765 9999999999999999999999
Q ss_pred CCCCCHHHHHHHhccCCCCCCcee
Q psy7952 366 GMPSSIPAYYQESGRAGRDGLQSY 389 (444)
Q Consensus 366 ~~p~s~~~~~Qr~GR~~R~g~~g~ 389 (444)
|..+++..-.|..-||.|.|+...
T Consensus 1121 dSDWNPT~D~QAMDRAHRLGQTrd 1144 (1185)
T KOG0388|consen 1121 DSDWNPTADQQAMDRAHRLGQTRD 1144 (1185)
T ss_pred cCCCCcchhhHHHHHHHhccCccc
Confidence 999999999999999999987654
No 158
>KOG1002|consensus
Probab=99.13 E-value=5.4e-10 Score=105.12 Aligned_cols=108 Identities=12% Similarity=0.079 Sum_probs=80.6
Q ss_pred CCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcC-CccE-EEEcCccccccccCCccEEEEeC
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRG-EINV-ITATISFGMGIDRQNVRFVVHWG 366 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~Gidi~~~~~Vi~~~ 366 (444)
...+.|||..-.....-+...|.+. |++..|...++.|++. .++| |++-.+.+..+|+....+|+++|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 3457788877666666666666655 9999999999999976 4665 78888899999999999999999
Q ss_pred CCCCHHHHHHHhccCCCCCC--ceeEEEEecccch-hhHHHHH
Q psy7952 367 MPSSIPAYYQESGRAGRDGL--QSYCRIYHSEHSK-KSLEYVI 406 (444)
Q Consensus 367 ~p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~~-~~~~~~~ 406 (444)
+-+++.---|.--|..|-|+ +=.++.|+..... +++-.+-
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQ 759 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQ 759 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHH
Confidence 99999888887777777775 3445555554433 3344443
No 159
>KOG0391|consensus
Probab=99.11 E-value=9.4e-10 Score=112.64 Aligned_cols=169 Identities=12% Similarity=0.107 Sum_probs=107.3
Q ss_pred hHHHHHHHHHH---ccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHh
Q psy7952 52 ELQKKAIRHIL---LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTS 128 (444)
Q Consensus 52 ~~Q~~~~~~~~---~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~ 128 (444)
+||..-++++. +.+-|.|+.-..|.|||.- .|.++. ++... -...|.+ ||||||-.+.+| .-.++
T Consensus 618 eYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllA-hLACe----egnWGPH---LIVVpTsviLnW---EMElK 685 (1958)
T KOG0391|consen 618 EYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLA-HLACE----EGNWGPH---LIVVPTSVILNW---EMELK 685 (1958)
T ss_pred HHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHH-HHHhc----ccCCCCc---eEEeechhhhhh---hHHHh
Confidence 58887777655 4445789999999999965 222111 11111 1234688 999999999965 45667
Q ss_pred hhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccC
Q psy7952 129 IVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG 208 (444)
Q Consensus 129 ~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~ 208 (444)
+|+-+ +++..++|... +++.-.+.|. ..+..+|.|+++..+... .......++.|+|+||+|.+-.+.
T Consensus 686 RwcPg---lKILTYyGs~k--ErkeKRqgW~-kPnaFHVCItSYklv~qd------~~AFkrkrWqyLvLDEaqnIKnfk 753 (1958)
T KOG0391|consen 686 RWCPG---LKILTYYGSHK--ERKEKRQGWA-KPNAFHVCITSYKLVFQD------LTAFKRKRWQYLVLDEAQNIKNFK 753 (1958)
T ss_pred hhCCc---ceEeeecCCHH--HHHHHhhccc-CCCeeEEeehhhHHHHhH------HHHHHhhccceeehhhhhhhcchh
Confidence 77888 99999988653 3333344443 356778888887765321 122234579999999999987654
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcC
Q psy7952 209 HDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKF 252 (444)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~ 252 (444)
+ ..|.. +++. .. .+.+++|+||-.+..-.++..+.+
T Consensus 754 s---qrWQA---llnf-ns-qrRLLLtgTPLqNslmELWSLmhF 789 (1958)
T KOG0391|consen 754 S---QRWQA---LLNF-NS-QRRLLLTGTPLQNSLMELWSLMHF 789 (1958)
T ss_pred H---HHHHH---Hhcc-ch-hheeeecCCchhhHHHHHHHHHHH
Confidence 2 12333 3322 22 567899999866555545444443
No 160
>KOG4439|consensus
Probab=99.10 E-value=6.1e-10 Score=108.92 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=60.5
Q ss_pred cCHHHHHHHHHHHh--cCCccE-EEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEE
Q psy7952 324 VNKHERSRVQESFM--RGEINV-ITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI 392 (444)
Q Consensus 324 ~~~~~r~~~~~~f~--~g~~~v-LvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 392 (444)
....+|..+++.|. .|..+| |++-...+.|+|+-..+|+|..|+.+++.-=.|..-|..|.|+...+++
T Consensus 780 v~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 780 VLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 67889999999997 454666 6667788999999999999999999999999999999999999877655
No 161
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.00 E-value=2e-10 Score=108.21 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=89.1
Q ss_pred HHHHHHHHHHcc------------CCcEEEEccCCCcccccccccccceEEeCCCccccccCC---ccceeEEEcchhhh
Q psy7952 53 LQKKAIRHILLR------------THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN---VRSRNGWISPILSS 117 (444)
Q Consensus 53 ~Q~~~~~~~~~~------------~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~---~~~~vlil~P~~~L 117 (444)
+|.+++..++.. .+.+++...+|+|||..++.++. .+...+ ...++||+||. .+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~----------~l~~~~~~~~~~~~LIv~P~-~l 69 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS----------YLKNEFPQRGEKKTLIVVPS-SL 69 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH----------HHHHCCTTSS-S-EEEEE-T-TT
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh----------hhhhccccccccceeEeecc-ch
Confidence 577777766432 26789999999999988443221 122222 21246999999 55
Q ss_pred hcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEE
Q psy7952 118 FYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIV 197 (444)
Q Consensus 118 ~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iV 197 (444)
. .||.+.+..+.. ....++..+.+..... ..........+++++|++.+....-.... ......++++||
T Consensus 70 ~--~~W~~E~~~~~~-~~~~~v~~~~~~~~~~------~~~~~~~~~~~vvi~ty~~~~~~~~~~~~-~~l~~~~~~~vI 139 (299)
T PF00176_consen 70 L--SQWKEEIEKWFD-PDSLRVIIYDGDSERR------RLSKNQLPKYDVVITTYETLRKARKKKDK-EDLKQIKWDRVI 139 (299)
T ss_dssp H--HHHHHHHHHHSG-T-TS-EEEESSSCHHH------HTTSSSCCCSSEEEEEHHHHH--TSTHTT-HHHHTSEEEEEE
T ss_pred h--hhhhhhhccccc-cccccccccccccccc------cccccccccceeeeccccccccccccccc-cccccccceeEE
Confidence 5 233344444421 1126777777665110 11111246789999998886400000011 112224589999
Q ss_pred EeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhc
Q psy7952 198 VDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK 251 (444)
Q Consensus 198 iDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~ 251 (444)
+||+|.+-+... ..+..+. .+. ....+++||||..+...++...+.
T Consensus 140 vDEaH~~k~~~s---~~~~~l~----~l~-~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 140 VDEAHRLKNKDS---KRYKALR----KLR-ARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp ETTGGGGTTTTS---HHHHHHH----CCC-ECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred Eecccccccccc---ccccccc----ccc-cceEEeeccccccccccccccchh
Confidence 999999854332 2222222 233 367889999998887776666554
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.99 E-value=1.2e-08 Score=103.96 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcc
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISP 113 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P 113 (444)
.-+.++-++.+|..+|. .|.-..-.+.. .-+..+.||-|||++|.+ |+.+..+...+.+ +++.
T Consensus 67 av~REa~~Rvlg~~~~d--VQliG~i~lh~---g~iaEM~TGEGKTL~atl--------p~ylnaL~gkgVh----vVTv 129 (822)
T COG0653 67 AVVREASKRVLGMRHFD--VQLLGGIVLHL---GDIAEMRTGEGKTLVATL--------PAYLNALAGKGVH----VVTV 129 (822)
T ss_pred HhhhHHHHHhcCCChhh--HHHhhhhhhcC---CceeeeecCCchHHHHHH--------HHHHHhcCCCCcE----Eeee
Confidence 34456777777888644 67554444444 467999999999999554 4433334444444 5555
Q ss_pred hhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh--
Q psy7952 114 ILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR-- 189 (444)
Q Consensus 114 ~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~-- 189 (444)
..-|+ ..=.+++..+ ..| +.+.....+....++...+ .+||.++|...+- |+++..++..
T Consensus 130 NdYLA--~RDae~m~~l~~~LG---lsvG~~~~~m~~~ek~~aY--------~~DItY~TnnElG---FDYLRDNm~~~~ 193 (822)
T COG0653 130 NDYLA--RRDAEWMGPLYEFLG---LSVGVILAGMSPEEKRAAY--------ACDITYGTNNELG---FDYLRDNMVTSQ 193 (822)
T ss_pred hHHhh--hhCHHHHHHHHHHcC---CceeeccCCCChHHHHHHH--------hcCceeccccccC---cchhhhhhhccH
Confidence 55566 1112333334 567 9999999999888888777 6899999988776 4444444221
Q ss_pred ----hCCccEEEEeccccc
Q psy7952 190 ----YNKLAYIVVDEAHCV 204 (444)
Q Consensus 190 ----~~~~~~iViDE~H~~ 204 (444)
...+.+.|+||++-+
T Consensus 194 ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 194 EEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred HHhhhccCCeEEEcchhhe
Confidence 246899999999977
No 163
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.78 E-value=1.2e-08 Score=94.72 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=44.7
Q ss_pred hCCcccCchHHHHHHHHHH----ccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCc---cceeEEEcchhh
Q psy7952 44 FGFDSFKCELQKKAIRHIL----LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNV---RSRNGWISPILS 116 (444)
Q Consensus 44 ~g~~~~~t~~Q~~~~~~~~----~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~---~~~vlil~P~~~ 116 (444)
|+|++ ++.|.+.+..+. +| .++++.+|||+|||++ ++.|+ +.++...+. ..+++|+++|..
T Consensus 5 FPy~~--r~~Q~~~m~~v~~~~~~~-~~~~~eapTGtGKTl~--------~L~~a-l~~~~~~~~~~~~~kvi~~t~T~~ 72 (289)
T smart00489 5 FPYEP--YPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLS--------LLCLT-LTWLRSFPERIQKIKLIYLSRTVS 72 (289)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHcC-CcEEEECCCCcchhHH--------HHHHH-HHHHHhCcccccccceeEEeccHH
Confidence 67775 479999655544 45 8899999999999999 66665 322232222 236799999988
Q ss_pred hh
Q psy7952 117 SF 118 (444)
Q Consensus 117 L~ 118 (444)
+.
T Consensus 73 ~~ 74 (289)
T smart00489 73 EI 74 (289)
T ss_pred HH
Confidence 86
No 164
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.78 E-value=1.2e-08 Score=94.72 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=44.7
Q ss_pred hCCcccCchHHHHHHHHHH----ccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCc---cceeEEEcchhh
Q psy7952 44 FGFDSFKCELQKKAIRHIL----LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNV---RSRNGWISPILS 116 (444)
Q Consensus 44 ~g~~~~~t~~Q~~~~~~~~----~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~---~~~vlil~P~~~ 116 (444)
|+|++ ++.|.+.+..+. +| .++++.+|||+|||++ ++.|+ +.++...+. ..+++|+++|..
T Consensus 5 FPy~~--r~~Q~~~m~~v~~~~~~~-~~~~~eapTGtGKTl~--------~L~~a-l~~~~~~~~~~~~~kvi~~t~T~~ 72 (289)
T smart00488 5 FPYEP--YPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLS--------LLCLT-LTWLRSFPERIQKIKLIYLSRTVS 72 (289)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHcC-CcEEEECCCCcchhHH--------HHHHH-HHHHHhCcccccccceeEEeccHH
Confidence 67775 479999655544 45 8899999999999999 66665 322232222 236799999988
Q ss_pred hh
Q psy7952 117 SF 118 (444)
Q Consensus 117 L~ 118 (444)
+.
T Consensus 73 ~~ 74 (289)
T smart00488 73 EI 74 (289)
T ss_pred HH
Confidence 86
No 165
>KOG1015|consensus
Probab=98.77 E-value=1.3e-07 Score=95.74 Aligned_cols=69 Identities=17% Similarity=0.081 Sum_probs=59.6
Q ss_pred cCHHHHHHHHHHHhcC-C--c-cEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEE
Q psy7952 324 VNKHERSRVQESFMRG-E--I-NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI 392 (444)
Q Consensus 324 ~~~~~r~~~~~~f~~g-~--~-~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 392 (444)
.....|..+...|.+- . . -.||+|.+.+.|||+=..+.||.||..|++.--+|-+=|+-|.|+..-|++
T Consensus 1198 t~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1198 TTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred ccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 6678899999999743 2 2 359999999999999999999999999999999999999999998765554
No 166
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.76 E-value=2.7e-06 Score=82.02 Aligned_cols=235 Identities=12% Similarity=0.133 Sum_probs=148.6
Q ss_pred CCeeEEEECCCccccccHHHHHH-------HHHhhCCccEEEEeccccccc--cCCCcHHHHHHHHHHHHhhC-------
Q psy7952 163 PRIKLLYVTPERAVTESFHYLLQ-------HLVRYNKLAYIVVDEAHCVSE--WGHDFRPTYRRLGELRQFTG------- 226 (444)
Q Consensus 163 ~~~~Iiv~Tpe~l~~~~~~~~~~-------~~~~~~~~~~iViDE~H~~~~--~~~~~~~~~~~l~~~~~~~~------- 226 (444)
..+||||++|=-|. ..+. ..-.++.|.++|+|.+|.+.- |.+ +. .+...++..|
T Consensus 130 y~SDIIiASPLGLr-----~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H-v~----~v~~~lN~~P~~~~~~D 199 (442)
T PF06862_consen 130 YSSDIIIASPLGLR-----MIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH-VL----HVFEHLNLQPKKSHDTD 199 (442)
T ss_pred ccCCEEEEChHHHH-----HHhccccccccccchhheeeeEeechhhHHHHhhHHH-HH----HHHHHhccCCCCCCCCC
Confidence 35799999998763 2222 233467899999999998742 221 11 1111222112
Q ss_pred --------------CCCcEEEEeccCCcchHHHHHHHhcC-CCCeEEEecC-------CCCCCceEEEEE--cccc----
Q psy7952 227 --------------NSIPIIALTATAEPSVKQDIISVLKF-NKPYKVFKTS-------TFRSNLFYDVIF--DDLL---- 278 (444)
Q Consensus 227 --------------~~~~~v~lSAT~~~~~~~~~~~~l~~-~~~~~~~~~~-------~~~~~~~~~~~~--~~~~---- 278 (444)
...|.|++|+...+.....+.....- ...+.+.... ...+.+...... ....
T Consensus 200 fsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~ 279 (442)
T PF06862_consen 200 FSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDP 279 (442)
T ss_pred HHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhh
Confidence 12478999999988766555543211 1111111111 111222222221 2221
Q ss_pred hhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcC
Q psy7952 279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATI 348 (444)
Q Consensus 279 ~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~ 348 (444)
+.........+...+.+ ......+|||++|-=+=..+...|++. .+..+-...-..|..|+.++|+-|.
T Consensus 280 d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TE 358 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTE 358 (442)
T ss_pred hHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEh
Confidence 22223333333333332 235789999999998888888888866 7778888888999999999999997
Q ss_pred cc--ccccccCCccEEEEeCCCCCHHHHHHHhccCCCCC------CceeEEEEecccchhhHHHHHhh
Q psy7952 349 SF--GMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG------LQSYCRIYHSEHSKKSLEYVIKT 408 (444)
Q Consensus 349 ~~--~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g------~~g~~~~~~~~~~~~~~~~~~~~ 408 (444)
=+ =+-..+.++++||+|++|..+.-|-..++-.+... ....|.++++.-|.-.+..++.+
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 54 34567889999999999999888877776554443 25789999999998888888753
No 167
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.61 E-value=2.1e-06 Score=89.66 Aligned_cols=69 Identities=17% Similarity=0.059 Sum_probs=53.7
Q ss_pred CCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCc
Q psy7952 163 PRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEP 240 (444)
Q Consensus 163 ~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~ 240 (444)
....|+++||..+. ..++.+......+..|||||||++.+.. .+.-|.++++...+...+.++||+|..
T Consensus 6 ~~ggi~~~T~rIl~----~DlL~~ri~~~~itgiiv~~Ahr~~~~~-----~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 6 LEGGIFSITSRILV----VDLLTGIIPPELITGILVLRADRIIESS-----QEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hcCCEEEEechhhH----hHHhcCCCCHHHccEEEEeecccccccc-----cHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 46789999999997 5668888888999999999999986422 134455666666666779999999775
No 168
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.55 E-value=5.2e-07 Score=97.88 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=81.8
Q ss_pred CCc--eEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcC--CccEEEEcCccccccccCCccEEEE
Q psy7952 299 ANN--CGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRG--EINVITATISFGMGIDRQNVRFVVH 364 (444)
Q Consensus 299 ~~~--~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~Gidi~~~~~Vi~ 364 (444)
.+. +++||+.......-+...+... ++...|...++.|.++ ..-+++++..++.|+|+...++||+
T Consensus 708 ~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~ 787 (866)
T COG0553 708 EGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL 787 (866)
T ss_pred hcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE
Confidence 455 8999999999888888888776 4478999999999986 3455888899999999999999999
Q ss_pred eCCCCCHHHHHHHhccCCCCCCceeEEEE
Q psy7952 365 WGMPSSIPAYYQESGRAGRDGLQSYCRIY 393 (444)
Q Consensus 365 ~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 393 (444)
+|+.+++....|...|+.|.|+...+.++
T Consensus 788 ~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 788 FDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred eccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 99999999999999999999887765443
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.52 E-value=1.2e-07 Score=85.87 Aligned_cols=133 Identities=14% Similarity=0.189 Sum_probs=90.0
Q ss_pred HHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhh
Q psy7952 37 TAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILS 116 (444)
Q Consensus 37 ~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~ 116 (444)
.++.++.+|+.+ .+.|.-+.-.+..| + ++...||-|||++++ +++++..+ .+.. |-|++.+..
T Consensus 67 rea~~r~~g~~p--~~vQll~~l~L~~G-~--laEm~TGEGKTli~~--------l~a~~~AL-~G~~---V~vvT~Ndy 129 (266)
T PF07517_consen 67 REAARRTLGLRP--YDVQLLGALALHKG-R--LAEMKTGEGKTLIAA--------LPAALNAL-QGKG---VHVVTSNDY 129 (266)
T ss_dssp HHHHHHHTS------HHHHHHHHHHHTT-S--EEEESTTSHHHHHHH--------HHHHHHHT-TSS----EEEEESSHH
T ss_pred HHHHHHHcCCcc--cHHHHhhhhhcccc-e--eEEecCCCCcHHHHH--------HHHHHHHH-hcCC---cEEEeccHH
Confidence 345566668775 46899888888766 3 899999999999944 44422223 2333 368888889
Q ss_pred hhcccCccchHhhh-----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh--
Q psy7952 117 SFYLRFRDDKTSIV-----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR-- 189 (444)
Q Consensus 117 L~~~~q~~~~~~~l-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~-- 189 (444)
|+ ....+.+ .+| +.+..+.++.....+.+.+ .++|+++|...+. |+.+..+...
T Consensus 130 LA-----~RD~~~~~~~y~~LG---lsv~~~~~~~~~~~r~~~Y--------~~dI~Y~t~~~~~---fD~Lrd~~~~~~ 190 (266)
T PF07517_consen 130 LA-----KRDAEEMRPFYEFLG---LSVGIITSDMSSEERREAY--------AADIVYGTNSEFG---FDYLRDNLALSK 190 (266)
T ss_dssp HH-----HHHHHHHHHHHHHTT-----EEEEETTTEHHHHHHHH--------HSSEEEEEHHHHH---HHHHHHTT-SSG
T ss_pred Hh-----hccHHHHHHHHHHhh---hccccCccccCHHHHHHHH--------hCcccccccchhh---HHHHHHHHhhcc
Confidence 98 6666655 677 9999999998877666666 4689999988876 3444433221
Q ss_pred ----hCCccEEEEecccccc
Q psy7952 190 ----YNKLAYIVVDEAHCVS 205 (444)
Q Consensus 190 ----~~~~~~iViDE~H~~~ 205 (444)
...++++||||+|.++
T Consensus 191 ~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 191 NEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp GG--SSSSSEEEECTHHHHT
T ss_pred chhccCCCCEEEEeccceEE
Confidence 3578999999999873
No 170
>KOG0952|consensus
Probab=98.49 E-value=2e-08 Score=102.69 Aligned_cols=227 Identities=15% Similarity=0.107 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV- 130 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l- 130 (444)
+.|...+..+..-+.++++.+|||+|||.+|..+++. .....+..+++++.|-++|+ .+-+..+
T Consensus 930 ~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~----------~~~~~p~~kvvyIap~kalv-----ker~~Dw~ 994 (1230)
T KOG0952|consen 930 PIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFR----------ALSYYPGSKVVYIAPDKALV-----KERSDDWS 994 (1230)
T ss_pred CccceEEEEEeecchhhhhcCCccCcchhHHHHHHHH----------HhccCCCccEEEEcCCchhh-----cccccchh
Confidence 4666666665555578999999999999996554332 22233346789999999999 8888887
Q ss_pred -cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH---HHhhCCccEEEEeccccccc
Q psy7952 131 -TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH---LVRYNKLAYIVVDEAHCVSE 206 (444)
Q Consensus 131 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~---~~~~~~~~~iViDE~H~~~~ 206 (444)
+...+++++...+|+...+.. . -...+++|+||++.. ...+. ...+.+++.+|+||.|++.+
T Consensus 995 ~r~~~~g~k~ie~tgd~~pd~~-----~----v~~~~~~ittpek~d-----gi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 995 KRDELPGIKVIELTGDVTPDVK-----A----VREADIVITTPEKWD-----GISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred hhcccCCceeEeccCccCCChh-----h----eecCceEEccccccc-----CccccccchhhhccccceeecccccccC
Confidence 344345889999888765521 1 136799999999963 22332 23356789999999999865
Q ss_pred c-CCCcHHHHHHHHHHH----HhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEE-ccc---
Q psy7952 207 W-GHDFRPTYRRLGELR----QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIF-DDL--- 277 (444)
Q Consensus 207 ~-~~~~~~~~~~l~~~~----~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 277 (444)
. |. .+..+..-. ...++..+.+++|--+. ..+++..+++..+. .-++ +..+|........ .+.
T Consensus 1061 ~rgP----Vle~ivsr~n~~s~~t~~~vr~~glsta~~--na~dla~wl~~~~~-~nf~-~svrpvp~~~~i~gfp~~~~ 1132 (1230)
T KOG0952|consen 1061 DRGP----VLEVIVSRMNYISSQTEEPVRYLGLSTALA--NANDLADWLNIKDM-YNFR-PSVRPVPLEVHIDGFPGQHY 1132 (1230)
T ss_pred CCcc----eEEEEeeccccCccccCcchhhhhHhhhhh--ccHHHHHHhCCCCc-CCCC-cccccCCceEeecCCCchhc
Confidence 3 32 111111111 11222355666665543 34678888887665 2222 2223322211111 111
Q ss_pred ---chhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHH
Q psy7952 278 ---LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADAL 320 (444)
Q Consensus 278 ---~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L 320 (444)
.....+.....++. ..+..+++||+.+++...--+..|
T Consensus 1133 cprm~smnkpa~qaik~-----~sp~~p~lifv~srrqtrlta~~l 1173 (1230)
T KOG0952|consen 1133 CPRMMSMNKPAFQAIKT-----HSPIKPVLIFVSSRRQTRLTALDL 1173 (1230)
T ss_pred chhhhhcccHHHHHHhc-----CCCCCceEEEeecccccccchHhH
Confidence 11111122222222 347889999999887654443333
No 171
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.41 E-value=2.5e-07 Score=83.60 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHccCCc-EEEEccCCCcccccccccccceEEeCCCcccc------ccCCccceeEEEcchhhhhcccCc
Q psy7952 51 CELQKKAIRHILLRTHD-IFVSMPTGAVSLVGSVVSARSRVRIPPGADFI------LNGNVRSRNGWISPILSSFYLRFR 123 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~-~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l------~~~~~~~~vlil~P~~~L~~~~q~ 123 (444)
++.|.+|+..++.. .. .+|.||+|||||.+..- + +..+ .......++|+++|+...+
T Consensus 3 n~~Q~~Ai~~~~~~-~~~~~i~GpPGTGKT~~l~~---------~-i~~~~~~~~~~~~~~~~~il~~~~sN~av----- 66 (236)
T PF13086_consen 3 NESQREAIQSALSS-NGITLIQGPPGTGKTTTLAS---------I-IAQLLQRFKSRSADRGKKILVVSPSNAAV----- 66 (236)
T ss_dssp -HHHHHHHHHHCTS-SE-EEEE-STTSSHHHHHHH---------H-HHHH-------HCCCSS-EEEEESSHHHH-----
T ss_pred CHHHHHHHHHHHcC-CCCEEEECCCCCChHHHHHH---------H-HHHhccchhhhhhhccccceeecCCchhH-----
Confidence 36899999999998 66 99999999999965111 1 1112 1133445779999999998
Q ss_pred cchHhhh
Q psy7952 124 DDKTSIV 130 (444)
Q Consensus 124 ~~~~~~l 130 (444)
.+.++++
T Consensus 67 d~~~~~l 73 (236)
T PF13086_consen 67 DNILERL 73 (236)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777776
No 172
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.35 E-value=2.4e-06 Score=72.70 Aligned_cols=99 Identities=23% Similarity=0.305 Sum_probs=71.6
Q ss_pred CCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcC--ccccccccCC--ccEEEE
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATI--SFGMGIDRQN--VRFVVH 364 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gidi~~--~~~Vi~ 364 (444)
.++.++||++|....+.+.+.+... -....+...++.|+.++..+|+++. .+++|||+|+ ++.||.
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii 87 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQGSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVII 87 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEESTCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeecCcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeee
Confidence 4689999999999999999988765 1356788999999999999999998 9999999996 778999
Q ss_pred eCCCCC------------------------------HHHHHHHhccCCCCCCceeEEEEeccc
Q psy7952 365 WGMPSS------------------------------IPAYYQESGRAGRDGLQSYCRIYHSEH 397 (444)
Q Consensus 365 ~~~p~s------------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 397 (444)
.+.|.. .....|.+||+-|..++--+++++++.
T Consensus 88 ~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 88 VGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 998851 223369999999986654445555543
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.20 E-value=7.7e-06 Score=85.76 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=42.1
Q ss_pred CccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCC
Q psy7952 340 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384 (444)
Q Consensus 340 ~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 384 (444)
..+.|++-+++-+|-|.|++-.++......|...-.|.+||+.|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 678999999999999999999999999888999999999999985
No 174
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.14 E-value=2.5e-06 Score=74.15 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=37.1
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhh
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSS 117 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L 117 (444)
+|+.|..++..+... +-+++.+|.|||||+.|+..+ ++.+.. +...+++++-|..+.
T Consensus 5 ~~~~Q~~~~~al~~~-~~v~~~G~AGTGKT~LA~a~A---------l~~v~~-g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 5 KNEEQKFALDALLNN-DLVIVNGPAGTGKTFLALAAA---------LELVKE-GEYDKIIITRPPVEA 61 (205)
T ss_dssp -SHHHHHHHHHHHH--SEEEEE--TTSSTTHHHHHHH---------HHHHHT-TS-SEEEEEE-S--T
T ss_pred CCHHHHHHHHHHHhC-CeEEEECCCCCcHHHHHHHHH---------HHHHHh-CCCcEEEEEecCCCC
Confidence 578999999999966 889999999999998844322 333433 666678888787754
No 175
>KOG0921|consensus
Probab=98.13 E-value=5.9e-06 Score=83.71 Aligned_cols=98 Identities=20% Similarity=0.269 Sum_probs=72.9
Q ss_pred CCceEEEEecccchHHHHHHHHHhh-----------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccE
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK-----------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRF 361 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~-----------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~ 361 (444)
-.+-++||.+-....-.+...+-.. ....+..++.+....|..++|++|.+.+..+.+.++..
T Consensus 642 i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~ 721 (1282)
T KOG0921|consen 642 IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVY 721 (1282)
T ss_pred CccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeE
Confidence 4567888988888777777766544 23344455566666788899999999999999888777
Q ss_pred EEEeCCC------------------CCHHHHHHHhccCCCCCCceeEEEEeccc
Q psy7952 362 VVHWGMP------------------SSIPAYYQESGRAGRDGLQSYCRIYHSEH 397 (444)
Q Consensus 362 Vi~~~~p------------------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 397 (444)
|++.+.- .|..+..||.||+||. ++|+|..+.+.-
T Consensus 722 vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 722 VIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred EEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH
Confidence 7754432 2677789999999998 788888877643
No 176
>KOG1016|consensus
Probab=98.10 E-value=0.00042 Score=69.69 Aligned_cols=96 Identities=15% Similarity=0.173 Sum_probs=77.5
Q ss_pred CCceEEEEecccchHHHHHHHHHhh----------------------------cCHHHHHHHHHHHhcC---CccEEEEc
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK----------------------------VNKHERSRVQESFMRG---EINVITAT 347 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~----------------------------~~~~~r~~~~~~f~~g---~~~vLvaT 347 (444)
.+.++|||..+.....-+...|.+. .+..+|.+.++.|.+- .+-++++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 4667888888777776666666555 5678899999999743 24678999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEe
Q psy7952 348 ISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 394 (444)
Q Consensus 348 ~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 394 (444)
.....|||+-..+.++.++..++..--.|.+-|+-|-|+..-|+++=
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 99999999987888888898999999999999999999887777654
No 177
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.00 E-value=2.2e-05 Score=71.53 Aligned_cols=165 Identities=19% Similarity=0.124 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHc--------c-CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhccc
Q psy7952 51 CELQKKAIRHILL--------R-THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLR 121 (444)
Q Consensus 51 t~~Q~~~~~~~~~--------~-~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~ 121 (444)
+..|.+++-.+.+ + ...+++--.||.||-.. .+ .++.+....++ +|.||++.+..|.
T Consensus 39 S~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~--------iA-giI~~n~l~Gr--~r~vwvS~s~dL~--- 104 (303)
T PF13872_consen 39 SALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQ--------IA-GIILENWLRGR--KRAVWVSVSNDLK--- 104 (303)
T ss_pred cHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccch--------hH-HHHHHHHHcCC--CceEEEECChhhh---
Confidence 4678887765542 1 15688999999999977 22 12123233332 2569999999999
Q ss_pred CccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCcccccc-----HHHHHHHHHhh---CC
Q psy7952 122 FRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTES-----FHYLLQHLVRY---NK 192 (444)
Q Consensus 122 q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~-----~~~~~~~~~~~---~~ 192 (444)
.+..+.+ ..+...+.+..+..-..... ..-...|+++|+..|.... ....+...... ..
T Consensus 105 --~Da~RDl~DIG~~~i~v~~l~~~~~~~~----------~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~df 172 (303)
T PF13872_consen 105 --YDAERDLRDIGADNIPVHPLNKFKYGDI----------IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDF 172 (303)
T ss_pred --hHHHHHHHHhCCCcccceechhhccCcC----------CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCC
Confidence 7877777 45544455554443111100 0124579999988875431 11122222221 22
Q ss_pred ccEEEEeccccccccCC---CcHHHHHHHHHHHHhhCCCCcEEEEeccCCcch
Q psy7952 193 LAYIVVDEAHCVSEWGH---DFRPTYRRLGELRQFTGNSIPIIALTATAEPSV 242 (444)
Q Consensus 193 ~~~iViDE~H~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~ 242 (444)
-++||+||||....... .-...-..+..+.+.+|+ .++|.+|||--..-
T Consensus 173 dgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATgasep 224 (303)
T PF13872_consen 173 DGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN-ARVVYASATGASEP 224 (303)
T ss_pred CceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC-CcEEEecccccCCC
Confidence 37899999999854321 011222344556666776 88999999965543
No 178
>KOG1803|consensus
Probab=97.99 E-value=1.2e-05 Score=78.67 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
..-|..|+..+...+.-.++++|+|+|||.+ +..++..+...+ ++||++.||..-+ .+.++++
T Consensus 187 n~SQk~Av~~~~~~k~l~~I~GPPGTGKT~T----------lvEiI~qlvk~~--k~VLVcaPSn~AV-----dNiverl 249 (649)
T KOG1803|consen 187 NSSQKAAVSFAINNKDLLIIHGPPGTGKTRT----------LVEIISQLVKQK--KRVLVCAPSNVAV-----DNIVERL 249 (649)
T ss_pred cHHHHHHHHHHhccCCceEeeCCCCCCceee----------HHHHHHHHHHcC--CeEEEEcCchHHH-----HHHHHHh
Confidence 4578888888888755689999999999977 222233343333 4679999999988 7888764
No 179
>KOG1513|consensus
Probab=97.96 E-value=0.00031 Score=70.79 Aligned_cols=74 Identities=23% Similarity=0.301 Sum_probs=54.8
Q ss_pred HHHHhcCCccEEEEcCccccccccCCccEE--------EEeCCCCCHHHHHHHhccCCCCCC---ceeEEEEecccchhh
Q psy7952 333 QESFMRGEINVITATISFGMGIDRQNVRFV--------VHWGMPSSIPAYYQESGRAGRDGL---QSYCRIYHSEHSKKS 401 (444)
Q Consensus 333 ~~~f~~g~~~vLvaT~~~~~Gidi~~~~~V--------i~~~~p~s~~~~~Qr~GR~~R~g~---~g~~~~~~~~~~~~~ 401 (444)
-++|.+|+..|-|-+..++.||-+..-+.| |-...|+|.+.-+|.+||+.|..+ +.|++++.+-...++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 346888998888888899999988754443 467799999999999999999865 466666655444444
Q ss_pred HHHHH
Q psy7952 402 LEYVI 406 (444)
Q Consensus 402 ~~~~~ 406 (444)
+..+.
T Consensus 930 FAS~V 934 (1300)
T KOG1513|consen 930 FASIV 934 (1300)
T ss_pred HHHHH
Confidence 44443
No 180
>KOG1802|consensus
Probab=97.91 E-value=2.7e-05 Score=76.71 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=55.9
Q ss_pred CCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCcc
Q psy7952 45 GFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRD 124 (444)
Q Consensus 45 g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~ 124 (444)
++..+ +.-|..|+.++++. .--+|.+|+|+|||.+. ..+...+... ...+||+++|+...+ +
T Consensus 407 ~lpkL-N~SQ~~AV~~VL~r-plsLIQGPPGTGKTvts----------a~IVyhl~~~-~~~~VLvcApSNiAV-----D 468 (935)
T KOG1802|consen 407 NLPKL-NASQSNAVKHVLQR-PLSLIQGPPGTGKTVTS----------ATIVYHLARQ-HAGPVLVCAPSNIAV-----D 468 (935)
T ss_pred Cchhh-chHHHHHHHHHHcC-CceeeecCCCCCceehh----------HHHHHHHHHh-cCCceEEEcccchhH-----H
Confidence 44443 46899999999998 77899999999999772 1112222222 223559999999999 6
Q ss_pred chHhhh-cCCCCceeEEEEeCC
Q psy7952 125 DKTSIV-TGRSDLYQLELIVSG 145 (444)
Q Consensus 125 ~~~~~l-~~~~~~i~~~~~~~~ 145 (444)
+..+.+ ..| +++..+...
T Consensus 469 qLaeKIh~tg---LKVvRl~ak 487 (935)
T KOG1802|consen 469 QLAEKIHKTG---LKVVRLCAK 487 (935)
T ss_pred HHHHHHHhcC---ceEeeeehh
Confidence 666666 667 777766553
No 181
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.88 E-value=4.4e-05 Score=77.85 Aligned_cols=84 Identities=23% Similarity=0.142 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc--CCcccee
Q psy7952 31 VSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN--GNVRSRN 108 (444)
Q Consensus 31 ~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~--~~~~~~v 108 (444)
+++..+.+.+...|+...-..++|+.|+...+.+ +-.+|.+++|+|||.+. ..++..+.. .+...++
T Consensus 134 ~~~~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~v----------~~ll~~l~~~~~~~~~~i 202 (615)
T PRK10875 134 VDEALLRQTLDALFGPVTDEVDWQKVAAAVALTR-RISVISGGPGTGKTTTV----------AKLLAALIQLADGERCRI 202 (615)
T ss_pred CChHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHH----------HHHHHHHHHhcCCCCcEE
Confidence 3456777788887766531247999999999987 88999999999999771 111111222 1223467
Q ss_pred EEEcchhhhhcccCccchHhhh
Q psy7952 109 GWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 109 lil~P~~~L~~~~q~~~~~~~l 130 (444)
+++.||...+ ....+.+
T Consensus 203 ~l~APTgkAA-----~rL~e~~ 219 (615)
T PRK10875 203 RLAAPTGKAA-----ARLTESL 219 (615)
T ss_pred EEECCcHHHH-----HHHHHHH
Confidence 8889999888 4554444
No 182
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.78 E-value=4.4e-05 Score=77.66 Aligned_cols=56 Identities=13% Similarity=-0.005 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC---ccceeEEEcchhhhh
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN---VRSRNGWISPILSSF 118 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~---~~~~vlil~P~~~L~ 118 (444)
++|+.|+..++.+ +-++|.+++|||||.+.. .++..+.... ...++++++||-..+
T Consensus 148 ~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~----------~ll~~l~~~~~~~~~~~I~l~APTGkAA 206 (586)
T TIGR01447 148 NWQKVAVALALKS-NFSLITGGPGTGKTTTVA----------RLLLALVKQSPKQGKLRIALAAPTGKAA 206 (586)
T ss_pred HHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHH----------HHHHHHHHhccccCCCcEEEECCcHHHH
Confidence 6999999999998 889999999999997611 1111122111 124679999998887
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.74 E-value=5e-05 Score=78.31 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
++.|.+|+..++.....++|++|+|||||.++. .. +..+...+ .+|++++||...+ .+.++++
T Consensus 159 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~---------~i-i~~~~~~g--~~VLv~a~sn~Av-----d~l~e~l 221 (637)
T TIGR00376 159 NESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV---------EL-IRQLVKRG--LRVLVTAPSNIAV-----DNLLERL 221 (637)
T ss_pred CHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH---------HH-HHHHHHcC--CCEEEEcCcHHHH-----HHHHHHH
Confidence 679999999998764678999999999997621 11 11122222 2679999999988 7777777
No 184
>KOG2340|consensus
Probab=97.71 E-value=0.0011 Score=64.02 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=79.8
Q ss_pred CceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCcc--ccccccCCccEEEEeCC
Q psy7952 300 NNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISF--GMGIDRQNVRFVVHWGM 367 (444)
Q Consensus 300 ~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~--~~Gidi~~~~~Vi~~~~ 367 (444)
...+|||.+|-=+-..+...+++. .+++.-...-.-|-.|...+|+-|.=+ -+-.++.+++.||+|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 345799999987777777777665 444555566667889999999998754 35688999999999999
Q ss_pred CCCHHHH---HHHhccCCCC----CCceeEEEEecccchhhHHHHHh
Q psy7952 368 PSSIPAY---YQESGRAGRD----GLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 368 p~s~~~~---~Qr~GR~~R~----g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
|..+.-| +-+.+|+.-. +....|.+++++-|.-.+..+..
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 9886655 5666665432 33467888999888877777754
No 185
>PRK10536 hypothetical protein; Provisional
Probab=97.70 E-value=0.00017 Score=64.73 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=41.2
Q ss_pred CCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhh
Q psy7952 45 GFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSS 117 (444)
Q Consensus 45 g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L 117 (444)
++.+ ++..|...+..+.++ ..+++.+|+|+|||+.|... + ++.+.. +...++++.-|+...
T Consensus 56 ~i~p-~n~~Q~~~l~al~~~-~lV~i~G~aGTGKT~La~a~--------a-~~~l~~-~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 56 PILA-RNEAQAHYLKAIESK-QLIFATGEAGCGKTWISAAK--------A-AEALIH-KDVDRIIVTRPVLQA 116 (262)
T ss_pred cccC-CCHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHH--------H-HHHHhc-CCeeEEEEeCCCCCc
Confidence 4455 578999999988887 78999999999999884321 1 112323 334466666666543
No 186
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.69 E-value=5.9e-05 Score=65.99 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHccCC-cEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 51 CELQKKAIRHILLRTH-DIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~-~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
++-|.+++..++.+.+ -.++.+|.|+|||.+ +..+...+...+ .++++++||...+
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~----------l~~~~~~~~~~g--~~v~~~apT~~Aa 59 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTL----------LKALAEALEAAG--KRVIGLAPTNKAA 59 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH----------HHHHHHHHHHTT----EEEEESSHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH----------HHHHHHHHHhCC--CeEEEECCcHHHH
Confidence 4689999999986533 467889999999976 222122233332 4679999999888
No 187
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.64 E-value=0.00087 Score=68.42 Aligned_cols=47 Identities=23% Similarity=0.179 Sum_probs=43.4
Q ss_pred cCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCC
Q psy7952 338 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384 (444)
Q Consensus 338 ~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 384 (444)
+...+.|.+-.++-+|-|-|+|=.++-.....|..+=+|.+||+.|-
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 34689999999999999999999999999999999999999999994
No 188
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.62 E-value=8.6e-05 Score=68.64 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=52.9
Q ss_pred HHHHHhCCcccCchHHHHHHHHHHccC-CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhh
Q psy7952 39 KLKALFGFDSFKCELQKKAIRHILLRT-HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSS 117 (444)
Q Consensus 39 ~l~~~~g~~~~~t~~Q~~~~~~~~~~~-~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L 117 (444)
.-++.||+.+ ++..|.-|+..+++.+ .-|.+.++.|||||+.|+.+ .+......+...++++.-|+..+
T Consensus 219 ~~~~vwGi~p-rn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaA---------gleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 219 EDQEVWGIRP-RNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAA---------GLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred CchhhhccCc-ccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHH---------HHHHHHHHhhhceEEEecCCcCc
Confidence 4457789998 6678999999999864 44789999999999884432 24446666666778888888877
Q ss_pred h
Q psy7952 118 F 118 (444)
Q Consensus 118 ~ 118 (444)
-
T Consensus 289 G 289 (436)
T COG1875 289 G 289 (436)
T ss_pred c
Confidence 5
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.56 E-value=0.00019 Score=75.27 Aligned_cols=67 Identities=10% Similarity=-0.008 Sum_probs=46.0
Q ss_pred HHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 39 KLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 39 ~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
.+...+++. .++.|.+|+..+..+ +-+++.+++|+|||.+ +..++..+...+...++++++||-..+
T Consensus 315 ~~~~~~~~~--l~~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt~----------l~~i~~~~~~~~~~~~v~l~ApTg~AA 381 (720)
T TIGR01448 315 EVEKKLRKG--LSEEQKQALDTAIQH-KVVILTGGPGTGKTTI----------TRAIIELAEELGGLLPVGLAAPTGRAA 381 (720)
T ss_pred HHHHhcCCC--CCHHHHHHHHHHHhC-CeEEEECCCCCCHHHH----------HHHHHHHHHHcCCCceEEEEeCchHHH
Confidence 344445655 358999999999877 7899999999999976 122122233333223568888998887
No 190
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.00086 Score=65.84 Aligned_cols=58 Identities=22% Similarity=0.141 Sum_probs=34.5
Q ss_pred HHHHHHHHHHh--cCCccEEEEcCccccccccCCc---cEEE---EeCCCCC----HHHHHHHhccCCCC
Q psy7952 327 HERSRVQESFM--RGEINVITATISFGMGIDRQNV---RFVV---HWGMPSS----IPAYYQESGRAGRD 384 (444)
Q Consensus 327 ~~r~~~~~~f~--~g~~~vLvaT~~~~~Gidi~~~---~~Vi---~~~~p~s----~~~~~Qr~GR~~R~ 384 (444)
++-...++.+. +.++++|.+.+.+.+|-|+-++ +.+. ...-... ...=.|-+||+.|-
T Consensus 315 ~e~~lllnsled~dnpir~if~vd~lnegwdvlnlfdmr~i~rrk~~an~kk~~~~TikekQLIGRGaRY 384 (812)
T COG3421 315 EESMLLLNSLEDRDNPIRVIFSVDKLNEGWDVLNLFDMRGIKRRKKMANDKKLAAATIKEKQLIGRGARY 384 (812)
T ss_pred HHHHHHHhhhhhcCCCeEEEEEeecccccchhhhhhhHHHHHHHHhhhcccchhhhhhhHHHHHhcccee
Confidence 34445555553 5689999999999999886431 1111 0001112 33346889998884
No 191
>PF13245 AAA_19: Part of AAA domain
Probab=97.42 E-value=5.5e-05 Score=54.79 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=35.8
Q ss_pred HHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccc-cCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 57 AIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFIL-NGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 57 ~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~-~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
++...+.+++-++|.+|+|||||.++ +..+...+. ......++++++|++..+ .+..+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~---------~~~i~~l~~~~~~~~~~vlv~a~t~~aa-----~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTL---------AARIAELLAARADPGKRVLVLAPTRAAA-----DELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHH---------HHHHHHHHHHhcCCCCeEEEECCCHHHH-----HHHHHHH
Confidence 45544444244566999999999661 111112121 111255789999999999 6555554
No 192
>KOG1805|consensus
Probab=97.34 E-value=0.00034 Score=72.22 Aligned_cols=127 Identities=13% Similarity=0.028 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV- 130 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l- 130 (444)
.-|++|+.+++......+|.+=+|||||.+ +..++..+...|. +||+.+-|...+ ++....+
T Consensus 672 ~dQr~A~~k~L~aedy~LI~GMPGTGKTTt----------I~~LIkiL~~~gk--kVLLtsyThsAV-----DNILiKL~ 734 (1100)
T KOG1805|consen 672 NDQRQALLKALAAEDYALILGMPGTGKTTT----------ISLLIKILVALGK--KVLLTSYTHSAV-----DNILIKLK 734 (1100)
T ss_pred HHHHHHHHHHHhccchheeecCCCCCchhh----------HHHHHHHHHHcCC--eEEEEehhhHHH-----HHHHHHHh
Confidence 589999999998856689999999999977 1111222333333 457777777777 7888777
Q ss_pred cCCCCceeEEEEeCCCChhhH-----------HHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEe
Q psy7952 131 TGRSDLYQLELIVSGQTKTEN-----------KAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVD 199 (444)
Q Consensus 131 ~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViD 199 (444)
..+ +....+..+...... ...+.+++...+...|+.+|-=-+..+ ....+.|||.|||
T Consensus 735 ~~~---i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p--------lf~~R~FD~cIiD 803 (1100)
T KOG1805|consen 735 GFG---IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP--------LFVNRQFDYCIID 803 (1100)
T ss_pred ccC---cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch--------hhhccccCEEEEc
Confidence 556 444433333222111 233445556678889999995444321 1223469999999
Q ss_pred ccccccc
Q psy7952 200 EAHCVSE 206 (444)
Q Consensus 200 E~H~~~~ 206 (444)
||-.+..
T Consensus 804 EASQI~l 810 (1100)
T KOG1805|consen 804 EASQILL 810 (1100)
T ss_pred ccccccc
Confidence 9998754
No 193
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.31 E-value=0.0021 Score=52.80 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCC-ccEEEEcCccccccccCC--ccEEEEeCCCCC-------------------------------HHHH
Q psy7952 329 RSRVQESFMRGE-INVITATISFGMGIDRQN--VRFVVHWGMPSS-------------------------------IPAY 374 (444)
Q Consensus 329 r~~~~~~f~~g~-~~vLvaT~~~~~Gidi~~--~~~Vi~~~~p~s-------------------------------~~~~ 374 (444)
...+++.|+... ..||+++..+++|+|+|+ ++.||..+.|.. ...+
T Consensus 36 ~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 115 (141)
T smart00492 36 TGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPDAMRTL 115 (141)
T ss_pred HHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 455667776543 379999988999999996 567998887741 2334
Q ss_pred HHHhccCCCCCCceeEEEEecc
Q psy7952 375 YQESGRAGRDGLQSYCRIYHSE 396 (444)
Q Consensus 375 ~Qr~GR~~R~g~~g~~~~~~~~ 396 (444)
.|.+||+-|..++--+++++++
T Consensus 116 ~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 116 AQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHhCccccCcCceEEEEEEec
Confidence 7999999998654334555543
No 194
>PRK08181 transposase; Validated
Probab=97.31 E-value=0.00087 Score=61.37 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=21.0
Q ss_pred hHHHHHHH---HHHccCCcEEEEccCCCccccc
Q psy7952 52 ELQKKAIR---HILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~---~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+.|..++. .+....+++++.||+|+|||..
T Consensus 90 ~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHL 122 (269)
T PRK08181 90 KAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHL 122 (269)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEecCCCcHHHH
Confidence 45555553 2333338899999999999966
No 195
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.25 E-value=0.00092 Score=58.35 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=37.7
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHh
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVL 250 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l 250 (444)
..+.++|+||-+.+... -...+..+..+.....+...++.+|||......+.+..+.
T Consensus 81 ~~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPR----DEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY 137 (196)
T ss_dssp HTTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH
T ss_pred hcCCCEEEEecCCcchh----hHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh
Confidence 34689999999877432 2344566666666665556688999999877666555443
No 196
>PRK06526 transposase; Provisional
Probab=97.15 E-value=0.00052 Score=62.47 Aligned_cols=17 Identities=12% Similarity=0.088 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccccc
Q psy7952 65 THDIFVSMPTGAVSLVG 81 (444)
Q Consensus 65 ~~~~ii~apTGsGKT~~ 81 (444)
.+++++.||+|+|||..
T Consensus 98 ~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 98 KENVVFLGPPGTGKTHL 114 (254)
T ss_pred CceEEEEeCCCCchHHH
Confidence 38999999999999976
No 197
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0034 Score=60.51 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=36.4
Q ss_pred hhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCC-CcEEEEeccCCcchHHHHHHH
Q psy7952 189 RYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNS-IPIIALTATAEPSVKQDIISV 249 (444)
Q Consensus 189 ~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~v~lSAT~~~~~~~~~~~~ 249 (444)
...+.++|+||++.+... -...+..+..++...... -.++.+|||........+...
T Consensus 251 ~~~~~DlVLIDTaGr~~~----~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPK----DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred HhCCCCEEEEcCCCCCcc----CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 346789999999998642 112245666666554432 467899999876555544333
No 198
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.95 E-value=0.00039 Score=66.94 Aligned_cols=43 Identities=12% Similarity=-0.006 Sum_probs=28.5
Q ss_pred CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
+-++|.+.+|||||++|+- . +..+.......+++++++...|.
T Consensus 2 ~v~~I~G~aGTGKTvla~~---------l-~~~l~~~~~~~~~~~l~~n~~l~ 44 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALN---------L-AKELQNSEEGKKVLYLCGNHPLR 44 (352)
T ss_pred eEEEEEecCCcCHHHHHHH---------H-HHHhhccccCCceEEEEecchHH
Confidence 3579999999999988331 1 11121122334559999999998
No 199
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.95 E-value=0.0028 Score=52.10 Aligned_cols=67 Identities=22% Similarity=0.208 Sum_probs=45.3
Q ss_pred HHHHHHHhcCC---ccEEEEcCc--cccccccCC--ccEEEEeCCCCC-------------------------------H
Q psy7952 330 SRVQESFMRGE---INVITATIS--FGMGIDRQN--VRFVVHWGMPSS-------------------------------I 371 (444)
Q Consensus 330 ~~~~~~f~~g~---~~vLvaT~~--~~~Gidi~~--~~~Vi~~~~p~s-------------------------------~ 371 (444)
..+++.|++.. ..||+++.- +++|||+|+ ++.||..+.|.. .
T Consensus 34 ~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 113 (142)
T smart00491 34 EELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAM 113 (142)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34555565432 257877766 999999996 678998887741 2
Q ss_pred HHHHHHhccCCCCCCceeEEEEecc
Q psy7952 372 PAYYQESGRAGRDGLQSYCRIYHSE 396 (444)
Q Consensus 372 ~~~~Qr~GR~~R~g~~g~~~~~~~~ 396 (444)
....|.+||+-|..++--+++++++
T Consensus 114 ~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 114 RALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHhCccccCccceEEEEEEec
Confidence 3347999999998654334555553
No 200
>KOG1132|consensus
Probab=96.84 E-value=0.0014 Score=67.29 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=33.3
Q ss_pred HHHhCCcccCchHHHHHHHHHHcc---CCcEEEEccCCCccccccccccc
Q psy7952 41 KALFGFDSFKCELQKKAIRHILLR---THDIFVSMPTGAVSLVGSVVSAR 87 (444)
Q Consensus 41 ~~~~g~~~~~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~ 87 (444)
.-.|.|.++| .|...+..+++. .++.++..|||+|||+.-++..+
T Consensus 15 ~V~fP~qpY~--~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~L 62 (945)
T KOG1132|consen 15 PVEFPFQPYP--TQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTL 62 (945)
T ss_pred eeeccCCcch--HHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHH
Confidence 3347777644 799888877752 37899999999999988555444
No 201
>KOG1133|consensus
Probab=96.83 E-value=0.025 Score=56.83 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh--------------cCHHHHHHHHHHHh----cCCc
Q psy7952 280 DSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--------------VNKHERSRVQESFM----RGEI 341 (444)
Q Consensus 280 ~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~--------------~~~~~r~~~~~~f~----~g~~ 341 (444)
.....+...+..+.... .+.+++|++|.+-..++...+... -+...-..+++.|. .|..
T Consensus 612 ~~l~~l~~~~~nL~~~V---PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~G 688 (821)
T KOG1133|consen 612 EMIKDLGSSISNLSNAV---PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRG 688 (821)
T ss_pred HHHHHHHHHHHHHHhhC---CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCcccHHHHHHHHHHHhhcCCC
Confidence 33445555555554443 588999999999888888777644 01111245555554 4554
Q ss_pred cEEEEc--CccccccccCC--ccEEEEeCCCCC--------------------------------HHHHHHHhccCCCCC
Q psy7952 342 NVITAT--ISFGMGIDRQN--VRFVVHWGMPSS--------------------------------IPAYYQESGRAGRDG 385 (444)
Q Consensus 342 ~vLvaT--~~~~~Gidi~~--~~~Vi~~~~p~s--------------------------------~~~~~Qr~GR~~R~g 385 (444)
.+|+|. .-+++|||+.+ ++.|+..|+|.. ....-|-+|||-|..
T Consensus 689 aiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~ 768 (821)
T KOG1133|consen 689 AILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHR 768 (821)
T ss_pred eEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566554 67899999975 778999998862 112248899999995
Q ss_pred CceeEEEEecc
Q psy7952 386 LQSYCRIYHSE 396 (444)
Q Consensus 386 ~~g~~~~~~~~ 396 (444)
++=.++++++.
T Consensus 769 ~DYA~i~LlD~ 779 (821)
T KOG1133|consen 769 KDYASIYLLDK 779 (821)
T ss_pred ccceeEEEehh
Confidence 55555555553
No 202
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.76 E-value=0.0053 Score=55.95 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=49.1
Q ss_pred HHHHHHhcCCccEEEEcCccccccccCCc--------cEEEEeCCCCCHHHHHHHhccCCCCCCc
Q psy7952 331 RVQESFMRGEINVITATISFGMGIDRQNV--------RFVVHWGMPSSIPAYYQESGRAGRDGLQ 387 (444)
Q Consensus 331 ~~~~~f~~g~~~vLvaT~~~~~Gidi~~~--------~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~ 387 (444)
...+.|.+|+..|+|-++..+.|+-++.- ++-|...+|+|+...+|..||+.|.++.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 34678999999999999999999987632 3567788999999999999999999874
No 203
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.71 E-value=0.0027 Score=66.98 Aligned_cols=72 Identities=15% Similarity=0.002 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEE
Q psy7952 31 VSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGW 110 (444)
Q Consensus 31 ~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vli 110 (444)
+++..+...+.. ++. .++.|.+|+..++.+++-++|.+++|+|||.+ +..+...+...+ .++++
T Consensus 338 ~~~~~~~~~l~~--~~~--Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl----------l~~i~~~~~~~g--~~V~~ 401 (744)
T TIGR02768 338 VSPPIVDAAIDQ--HYR--LSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM----------LKAAREAWEAAG--YRVIG 401 (744)
T ss_pred CCHHHHHHHHhc--cCC--CCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH----------HHHHHHHHHhCC--CeEEE
Confidence 344455555542 222 24799999999998646689999999999966 222122222222 35688
Q ss_pred Ecchhhhh
Q psy7952 111 ISPILSSF 118 (444)
Q Consensus 111 l~P~~~L~ 118 (444)
++||-..+
T Consensus 402 ~ApTg~Aa 409 (744)
T TIGR02768 402 AALSGKAA 409 (744)
T ss_pred EeCcHHHH
Confidence 88998776
No 204
>PRK12377 putative replication protein; Provisional
Probab=96.71 E-value=0.0038 Score=56.48 Aligned_cols=40 Identities=8% Similarity=-0.037 Sum_probs=25.8
Q ss_pred CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
.++++.+|+|+|||..| .++...+...+.. +++++..+|.
T Consensus 102 ~~l~l~G~~GtGKThLa----------~AIa~~l~~~g~~---v~~i~~~~l~ 141 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA----------AAIGNRLLAKGRS---VIVVTVPDVM 141 (248)
T ss_pred CeEEEECCCCCCHHHHH----------HHHHHHHHHcCCC---eEEEEHHHHH
Confidence 57999999999999662 2223334444555 5555666666
No 205
>KOG0989|consensus
Probab=96.70 E-value=0.002 Score=58.51 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=30.0
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccC
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATA 238 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~ 238 (444)
.+..||+||||.|.. ..+..+.+....++...++++.+.-+
T Consensus 129 ~fKiiIlDEcdsmts------daq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 129 PFKIIILDECDSMTS------DAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred cceEEEEechhhhhH------HHHHHHHHHHhccccceEEEEEcCCh
Confidence 568999999999853 23456666666677778888877664
No 206
>PRK08727 hypothetical protein; Validated
Probab=96.68 E-value=0.0035 Score=56.51 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999965
No 207
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.67 E-value=0.0063 Score=53.63 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=62.4
Q ss_pred cCchHHHHHHHHHHcc--CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccch
Q psy7952 49 FKCELQKKAIRHILLR--THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDK 126 (444)
Q Consensus 49 ~~t~~Q~~~~~~~~~~--~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~ 126 (444)
+| +.|.+...++.+. ..+.+..+-+|.|||.+ .+|+ +..+...+.. -+.+++|. +|. .+.
T Consensus 24 iR-~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV---------I~Pm-la~~LAdg~~-LvrviVpk-~Ll-----~q~ 85 (229)
T PF12340_consen 24 IR-PVQVEIAREMISPPSGKNSVMQLNMGEGKTSV---------IVPM-LALALADGSR-LVRVIVPK-ALL-----EQM 85 (229)
T ss_pred ee-HHHHHHHHHHhCCCCCCCeEeeecccCCccch---------HHHH-HHHHHcCCCc-EEEEEcCH-HHH-----HHH
Confidence 45 7999999999873 26889999999999988 5566 3333333322 23445554 455 333
Q ss_pred Hhhh--cCC---CCceeEEEEeCCCChhhH--HHHHHHHHhcCCCeeEEEECCCcccc
Q psy7952 127 TSIV--TGR---SDLYQLELIVSGQTKTEN--KAILEELRLVKPRIKLLYVTPERAVT 177 (444)
Q Consensus 127 ~~~l--~~~---~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Iiv~Tpe~l~~ 177 (444)
...+ +++ ...+-...+......... ..+..-+........|+++|||.+.+
T Consensus 86 ~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 86 RQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred HHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 3333 111 112444445544443221 11222222223466799999998864
No 208
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.05 Score=52.18 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=33.4
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHh
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVL 250 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l 250 (444)
+.++|+||-+-+... -...+..+.++++...+...++.+|||........+.+.+
T Consensus 320 ~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 320 RVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred CCCEEEEeCccccCc----CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 589999999877432 2333455555555443334467799987765544444444
No 209
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.59 E-value=0.015 Score=55.41 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=39.2
Q ss_pred HHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhc
Q psy7952 184 LQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK 251 (444)
Q Consensus 184 ~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~ 251 (444)
......+.+.++|.||=+-+-.. -......+..+.+...+.-..+.+|||........+...+.
T Consensus 273 ~~ai~~l~~~d~ILVDTaGrs~~----D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~ 336 (407)
T COG1419 273 AEAIEALRDCDVILVDTAGRSQY----DKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS 336 (407)
T ss_pred HHHHHHhhcCCEEEEeCCCCCcc----CHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc
Confidence 44445556778888888876321 12334555555555444345688999987777766666554
No 210
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.48 E-value=0.0058 Score=65.68 Aligned_cols=74 Identities=14% Similarity=-0.079 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHH--hCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCcccee
Q psy7952 31 VSEQELTAKLKAL--FGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRN 108 (444)
Q Consensus 31 ~~~~~~~~~l~~~--~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~v 108 (444)
+++......+... .|+. .++-|.+++..++.+.+-+++.++.|+|||.+ +..+...+...+ .+|
T Consensus 328 v~~~~~~~~l~~~~~~g~~--Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~----------l~~~~~~~e~~G--~~V 393 (988)
T PRK13889 328 VSDADREAALARAEARGLV--LSGEQADALAHVTDGRDLGVVVGYAGTGKSAM----------LGVAREAWEAAG--YEV 393 (988)
T ss_pred CCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH----------HHHHHHHHHHcC--CeE
Confidence 4455555544431 2443 35799999999998745579999999999976 222122222222 346
Q ss_pred EEEcchhhhh
Q psy7952 109 GWISPILSSF 118 (444)
Q Consensus 109 lil~P~~~L~ 118 (444)
+.++||-..+
T Consensus 394 ~~~ApTGkAA 403 (988)
T PRK13889 394 RGAALSGIAA 403 (988)
T ss_pred EEecCcHHHH
Confidence 8888988776
No 211
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.45 E-value=0.0057 Score=49.48 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=12.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.++|.||+|+|||..
T Consensus 5 ~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 5 RILVISGPPGSGKTTL 20 (131)
T ss_dssp --EEEEE-TTSSHHHH
T ss_pred cccEEEcCCCCCHHHH
Confidence 6789999999999987
No 212
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.40 E-value=0.0023 Score=61.86 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=37.7
Q ss_pred chHHHHHHHHH------HccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 51 CELQKKAIRHI------LLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 51 t~~Q~~~~~~~------~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
++-|++++..+ .++ ..+++.+|-|+|||++ +.++.+.+.. ....+++++||-..|
T Consensus 3 n~eQ~~~~~~v~~~~~~~~~-~~~fv~G~~GtGKs~l----------~~~i~~~~~~--~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIENEEG-LNFFVTGPAGTGKSFL----------IKAIIDYLRS--RGKKVLVTAPTGIAA 63 (364)
T ss_pred CHHHHHHHHHHHHHHHccCC-cEEEEEcCCCCChhHH----------HHHHHHHhcc--ccceEEEecchHHHH
Confidence 36799998887 445 7899999999999976 3331222222 233568888888776
No 213
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.26 E-value=0.0014 Score=61.84 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC-CccceeEEEcchhhhhcccCccchHhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG-NVRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~-~~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
|+-|.+++.. .. ++++|.|+.|||||.+ ....+ +..+... ....+++++++|+..+ .+.-.+
T Consensus 2 ~~eQ~~~i~~-~~--~~~lV~a~AGSGKT~~--------l~~ri-~~ll~~~~~~~~~Il~lTft~~aa-----~e~~~r 64 (315)
T PF00580_consen 2 TDEQRRIIRS-TE--GPLLVNAGAGSGKTTT--------LLERI-AYLLYEGGVPPERILVLTFTNAAA-----QEMRER 64 (315)
T ss_dssp -HHHHHHHHS--S--SEEEEEE-TTSSHHHH--------HHHHH-HHHHHTSSSTGGGEEEEESSHHHH-----HHHHHH
T ss_pred CHHHHHHHhC-CC--CCEEEEeCCCCCchHH--------HHHHH-HHhhccccCChHHheecccCHHHH-----HHHHHH
Confidence 4679999988 33 6999999999999988 11111 2223333 2345889999999998 566565
Q ss_pred h
Q psy7952 130 V 130 (444)
Q Consensus 130 l 130 (444)
+
T Consensus 65 i 65 (315)
T PF00580_consen 65 I 65 (315)
T ss_dssp H
T ss_pred H
Confidence 5
No 214
>PRK06921 hypothetical protein; Provisional
Probab=96.22 E-value=0.013 Score=53.89 Aligned_cols=16 Identities=13% Similarity=-0.074 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+++++.+|+|+|||..
T Consensus 118 ~~l~l~G~~G~GKThL 133 (266)
T PRK06921 118 NSIALLGQPGSGKTHL 133 (266)
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999966
No 215
>KOG2028|consensus
Probab=96.20 E-value=0.0058 Score=56.81 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=30.1
Q ss_pred HHHHHHhCCcccCchHHHHHHHHHHccC--CcEEEEccCCCccccc
Q psy7952 38 AKLKALFGFDSFKCELQKKAIRHILLRT--HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 38 ~~l~~~~g~~~~~t~~Q~~~~~~~~~~~--~~~ii~apTGsGKT~~ 81 (444)
+.|.+.+|-+.+- -|.-.+..++..+ .++++++|+|+|||..
T Consensus 135 ktL~dyvGQ~hlv--~q~gllrs~ieq~~ipSmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 135 KTLDDYVGQSHLV--GQDGLLRSLIEQNRIPSMILWGPPGTGKTTL 178 (554)
T ss_pred chHHHhcchhhhc--CcchHHHHHHHcCCCCceEEecCCCCchHHH
Confidence 4566666666544 4666677766543 5799999999999966
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.20 E-value=0.011 Score=53.33 Aligned_cols=30 Identities=17% Similarity=-0.035 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHc-------cCCcEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILL-------RTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~-------~~~~~ii~apTGsGKT~~ 81 (444)
+.|..++..+.+ +...+++.+++|+|||..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThL 115 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHL 115 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHH
Confidence 355555554442 114799999999999966
No 217
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.20 E-value=0.004 Score=56.75 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHc------cCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 52 ELQKKAIRHILL------RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 52 ~~Q~~~~~~~~~------~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
..+..++..+.. ...++++.||+|+|||..| .++...+...|.. +.++++.+++
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa----------~Ai~~~l~~~g~s---v~f~~~~el~ 145 (254)
T COG1484 86 GIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLA----------IAIGNELLKAGIS---VLFITAPDLL 145 (254)
T ss_pred chhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHH----------HHHHHHHHHcCCe---EEEEEHHHHH
Confidence 455555554432 2279999999999999762 2223334466777 8888888888
No 218
>PRK05642 DNA replication initiation factor; Validated
Probab=96.19 E-value=0.0083 Score=54.09 Aligned_cols=16 Identities=13% Similarity=-0.122 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..++++||+|+|||..
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999965
No 219
>PRK14974 cell division protein FtsY; Provisional
Probab=96.11 E-value=0.055 Score=51.25 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=35.0
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHH
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIIS 248 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~ 248 (444)
...++|+||.++++.. -...+..+.++......+..++.++||......+.+..
T Consensus 221 ~~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 221 RGIDVVLIDTAGRMHT----DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred CCCCEEEEECCCccCC----cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 4578999999998642 23344555555555555566888999876655544433
No 220
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.11 E-value=0.0017 Score=55.76 Aligned_cols=41 Identities=10% Similarity=0.001 Sum_probs=25.6
Q ss_pred CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 65 THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 65 ~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
.+++++.+|+|+|||..|. ++...+...+.. +..++...|+
T Consensus 47 ~~~l~l~G~~G~GKThLa~----------ai~~~~~~~g~~---v~f~~~~~L~ 87 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAV----------AIANEAIRKGYS---VLFITASDLL 87 (178)
T ss_dssp --EEEEEESTTSSHHHHHH----------HHHHHHHHTT-----EEEEEHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHH----------HHHHHhccCCcc---eeEeecCcee
Confidence 3889999999999997732 112234445555 6666777777
No 221
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.08 E-value=0.018 Score=54.47 Aligned_cols=40 Identities=13% Similarity=-0.083 Sum_probs=26.1
Q ss_pred CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
+++++.||||+|||..| .++...+...+.. ++..+...|.
T Consensus 184 ~~Lll~G~~GtGKThLa----------~aIa~~l~~~g~~---V~y~t~~~l~ 223 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLS----------NCIAKELLDRGKS---VIYRTADELI 223 (329)
T ss_pred CcEEEECCCCCcHHHHH----------HHHHHHHHHCCCe---EEEEEHHHHH
Confidence 78999999999999662 2223334444544 5555656665
No 222
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.06 E-value=0.016 Score=51.61 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=28.4
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhh-CCCCcEEEEeccCCcch
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFT-GNSIPIIALTATAEPSV 242 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~v~lSAT~~~~~ 242 (444)
+...+++++|++|.+.+.. .....+.++++.+ ..+.++|+.|..+|...
T Consensus 95 ~~~~DlL~iDDi~~l~~~~----~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQ----RTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHH----HHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCch----HHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4578999999999975421 1123333444333 23366777776666543
No 223
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.05 E-value=0.18 Score=49.67 Aligned_cols=58 Identities=17% Similarity=0.090 Sum_probs=34.3
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHH-hhCCCCcEEEEeccCCcchHHHHHHHhc
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQ-FTGNSIPIIALTATAEPSVKQDIISVLK 251 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~v~lSAT~~~~~~~~~~~~l~ 251 (444)
..+.++|+||.+-+... -......+..+.. ........+.+|||........+...+.
T Consensus 297 ~~~~DlVlIDt~G~~~~----d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 297 LRDCDVILIDTAGRSQR----DKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred hCCCCEEEEeCCCCCCC----CHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 44689999999876322 1222344444444 1122244788999988766666555543
No 224
>KOG1131|consensus
Probab=96.05 E-value=0.025 Score=54.95 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=56.9
Q ss_pred CceEEEEecccchHHHHHHHHHhh----------------cCHHHHHHHHHHHh----cCCccE--EEEcCccccccccC
Q psy7952 300 NNCGIIYCRTREHTTDLADALRRK----------------VNKHERSRVQESFM----RGEINV--ITATISFGMGIDRQ 357 (444)
Q Consensus 300 ~~~~iVf~~s~~~~~~l~~~L~~~----------------~~~~~r~~~~~~f~----~g~~~v--LvaT~~~~~Gidi~ 357 (444)
.+.++.|+.+.-..+.++...... -+..+-...++.++ .|...| =|+-.-.++|+|+.
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 344566777665555554443332 12222234444443 344444 46678889999997
Q ss_pred Ccc--EEEEeCCCCC---------------------------HH---HHHHHhccCCCCCCceeEEEEecc
Q psy7952 358 NVR--FVVHWGMPSS---------------------------IP---AYYQESGRAGRDGLQSYCRIYHSE 396 (444)
Q Consensus 358 ~~~--~Vi~~~~p~s---------------------------~~---~~~Qr~GR~~R~g~~g~~~~~~~~ 396 (444)
+-. .||+++.|.- .+ .-.|-.||+.|. +..|...++.+
T Consensus 610 hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~-K~dYg~mI~aD 679 (755)
T KOG1131|consen 610 HHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRG-KTDYGLMIFAD 679 (755)
T ss_pred cccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhc-cccceeeEeee
Confidence 644 8999999861 11 124778999886 66666666643
No 225
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.04 E-value=0.036 Score=49.98 Aligned_cols=16 Identities=19% Similarity=-0.039 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..++++||+|+|||..
T Consensus 46 ~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 46 GYIYLWSREGAGRSHL 61 (235)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999966
No 226
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.03 E-value=0.015 Score=47.59 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 20 ~~v~i~G~~G~GKT~l 35 (151)
T cd00009 20 KNLLLYGPPGTGKTTL 35 (151)
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999976
No 227
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.014 Score=59.37 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=27.0
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEecc
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTAT 237 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT 237 (444)
.+.+++||||+|.|.... .+.+.+.+..-+.++.+|+.|.-
T Consensus 123 gr~KViIIDEah~Ls~~A------aNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHA------FNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCHHH------HHHHHHhhccCCCCceEEEEeCC
Confidence 467899999999986422 34455555555555666666643
No 228
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.02 E-value=0.015 Score=55.05 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHccC---CcEEEEccCCCcccccc
Q psy7952 52 ELQKKAIRHILLRT---HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~---~~~ii~apTGsGKT~~a 82 (444)
|||...++.+.+.+ +-.++++|.|.|||..|
T Consensus 6 PWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 6 PWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA 39 (328)
T ss_pred CCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH
Confidence 59999999998753 34889999999999774
No 229
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.099 Score=50.19 Aligned_cols=55 Identities=11% Similarity=0.153 Sum_probs=30.3
Q ss_pred hhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHH
Q psy7952 189 RYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDII 247 (444)
Q Consensus 189 ~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~ 247 (444)
.+.+.++|+||.+-..... ......+..+.........++.+|||........+.
T Consensus 212 ~l~~~DlVLIDTaG~~~~d----~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQRD----RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred HhcCCCEEEEcCCCCCccc----HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 4556799999999763210 112222322222222224588999998776655443
No 230
>PRK04296 thymidine kinase; Provisional
Probab=95.98 E-value=0.0064 Score=52.91 Aligned_cols=15 Identities=7% Similarity=-0.150 Sum_probs=12.9
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-.++.+|+|+|||..
T Consensus 4 i~litG~~GsGKTT~ 18 (190)
T PRK04296 4 LEFIYGAMNSGKSTE 18 (190)
T ss_pred EEEEECCCCCHHHHH
Confidence 468899999999976
No 231
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.98 E-value=0.016 Score=57.78 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.||+|+|||..
T Consensus 149 ~~l~l~G~~G~GKThL 164 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL 164 (450)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999966
No 232
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.91 E-value=0.014 Score=57.72 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+++++.||+|+|||..
T Consensus 142 npl~L~G~~G~GKTHL 157 (445)
T PRK12422 142 NPIYLFGPEGSGKTHL 157 (445)
T ss_pred ceEEEEcCCCCCHHHH
Confidence 4689999999999966
No 233
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.89 E-value=0.015 Score=57.72 Aligned_cols=16 Identities=13% Similarity=0.085 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.|++|+|||..
T Consensus 142 npl~i~G~~G~GKTHL 157 (450)
T PRK14087 142 NPLFIYGESGMGKTHL 157 (450)
T ss_pred CceEEECCCCCcHHHH
Confidence 4689999999999966
No 234
>KOG0739|consensus
Probab=95.86 E-value=0.029 Score=50.91 Aligned_cols=57 Identities=26% Similarity=0.254 Sum_probs=31.8
Q ss_pred hhCCccEEEEeccccccccCC-CcHHHHHHHH-HHH-H--hh-CCCCcEEEEeccCCcchHHH
Q psy7952 189 RYNKLAYIVVDEAHCVSEWGH-DFRPTYRRLG-ELR-Q--FT-GNSIPIIALTATAEPSVKQD 245 (444)
Q Consensus 189 ~~~~~~~iViDE~H~~~~~~~-~~~~~~~~l~-~~~-~--~~-~~~~~~v~lSAT~~~~~~~~ 245 (444)
.-...+.|+|||++.+..... .-.....+|+ .++ + .. .++--++.+.||-.+...+.
T Consensus 222 Re~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 222 RENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred HhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHH
Confidence 345789999999998854221 1122223332 111 1 12 23355889999976655443
No 235
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.84 E-value=0.02 Score=56.76 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+++++.||+|+|||..
T Consensus 131 n~l~lyG~~G~GKTHL 146 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL 146 (440)
T ss_pred CeEEEEcCCCCcHHHH
Confidence 4699999999999966
No 236
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.83 E-value=0.034 Score=57.58 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=25.4
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
.+.+++||||+|.|.... .+.+.+.+...+.+..+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A------~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA------FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH------HHHHHHHHHhcCCCeEEEEEE
Confidence 357899999999986422 344555555555556666555
No 237
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.82 E-value=0.031 Score=51.44 Aligned_cols=49 Identities=24% Similarity=0.278 Sum_probs=27.5
Q ss_pred HHHhhCCccEEEEeccccccccCC-CcHHHHHHHHHHHHhhCCCCcEEEEecc
Q psy7952 186 HLVRYNKLAYIVVDEAHCVSEWGH-DFRPTYRRLGELRQFTGNSIPIIALTAT 237 (444)
Q Consensus 186 ~~~~~~~~~~iViDE~H~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~v~lSAT 237 (444)
+....-..+++||||+|.++.... ..+..+..|+.+-+.+ ..++|++ +|
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~v-Gt 188 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIVGV-GT 188 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeEEe-cc
Confidence 344455789999999999865331 2233333333332222 2567765 55
No 238
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.82 E-value=0.012 Score=51.03 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=14.3
Q ss_pred hhCCccEEEEeccccccc
Q psy7952 189 RYNKLAYIVVDEAHCVSE 206 (444)
Q Consensus 189 ~~~~~~~iViDE~H~~~~ 206 (444)
...+.+++|+||...+.+
T Consensus 92 ~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 92 EEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHhCCCEEEEeCcHHHhh
Confidence 345789999999998754
No 239
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.75 E-value=0.083 Score=48.67 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=23.1
Q ss_pred cCchHHHHHHHHHH----ccCCcEEEEccCCCccccc
Q psy7952 49 FKCELQKKAIRHIL----LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 49 ~~t~~Q~~~~~~~~----~~~~~~ii~apTGsGKT~~ 81 (444)
|+++.+.+++..+. .+...+++.||+|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 34556666666553 2324689999999999977
No 240
>PRK08116 hypothetical protein; Validated
Probab=95.72 E-value=0.023 Score=52.35 Aligned_cols=16 Identities=6% Similarity=-0.091 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.|++|+|||..
T Consensus 115 ~gl~l~G~~GtGKThL 130 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL 130 (268)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3499999999999976
No 241
>PRK06893 DNA replication initiation factor; Validated
Probab=95.72 E-value=0.015 Score=52.30 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=27.5
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhh-CCCCcEEEEeccCCcchH
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFT-GNSIPIIALTATAEPSVK 243 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~v~lSAT~~~~~~ 243 (444)
.+.+++++||+|.+..... .. ..+..+++.. ..+.+++++|++..+...
T Consensus 90 ~~~dlLilDDi~~~~~~~~-~~---~~l~~l~n~~~~~~~~illits~~~p~~l 139 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEE-WE---LAIFDLFNRIKEQGKTLLLISADCSPHAL 139 (229)
T ss_pred ccCCEEEEeChhhhcCChH-HH---HHHHHHHHHHHHcCCcEEEEeCCCChHHc
Confidence 3678999999998753211 11 1233333322 223557778887655443
No 242
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.72 E-value=0.037 Score=50.84 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=15.0
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
.++++.+|+|+|||.+|
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 57899999999999873
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=95.71 E-value=0.041 Score=50.41 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=16.2
Q ss_pred HccCCcEEEEccCCCccccc
Q psy7952 62 LLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 62 ~~~~~~~ii~apTGsGKT~~ 81 (444)
..+ .++++.+|+|+|||..
T Consensus 100 ~~~-~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 100 ERN-ENIVLLGPSGVGKTHL 118 (259)
T ss_pred hcC-CeEEEEeCCCCCHHHH
Confidence 345 7899999999999966
No 244
>KOG1001|consensus
Probab=95.66 E-value=0.021 Score=58.94 Aligned_cols=69 Identities=13% Similarity=0.061 Sum_probs=56.0
Q ss_pred cCHHHHHHHHHHHhcCC-ccE-EEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEE
Q psy7952 324 VNKHERSRVQESFMRGE-INV-ITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI 392 (444)
Q Consensus 324 ~~~~~r~~~~~~f~~g~-~~v-LvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 392 (444)
|....|...+..|..+. .++ +++..+...|+|+-...+|+..|+-+++...-|.+-|+-|-|+...+.+
T Consensus 573 ~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 573 MLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 66677888888887443 333 6778889999999999999999999999999999999999988765443
No 245
>KOG0742|consensus
Probab=95.65 E-value=0.036 Score=52.47 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+++++.+|+|+|||..
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999977
No 246
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.61 E-value=0.018 Score=56.60 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.||+|+|||..
T Consensus 137 n~l~l~G~~G~GKThL 152 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL 152 (405)
T ss_pred CeEEEECCCCCcHHHH
Confidence 4589999999999976
No 247
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.089 Score=53.07 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=26.6
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
.+.+++||||+|.+... ....+.+.+...++++.+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~------a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH------SFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH------HHHHHHHHHhccCCCeEEEEEE
Confidence 36789999999998642 2345556666666666676655
No 248
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.058 Score=56.96 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=25.1
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEE
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIAL 234 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~l 234 (444)
.+..++||||+|.|.. .....+.+.+...+.+.++|+.
T Consensus 118 gk~KViIIDEAh~LT~------eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR------SSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCH------HHHHHHHHHHhccCCCeEEEEE
Confidence 4678999999999753 2235555555555555666664
No 249
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.50 E-value=0.088 Score=51.59 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.||+|+|||.+
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999977
No 250
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.45 E-value=0.067 Score=51.81 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.+++|.||+|+|||.+
T Consensus 41 ~~i~I~G~~GtGKT~l 56 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV 56 (365)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5799999999999977
No 251
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.43 E-value=0.061 Score=55.20 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=26.8
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
+...+++||||+|.+... ....+.+.+...+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~------a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA------AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH------HHHHHHHHHHhCCCCeEEEEEe
Confidence 456789999999998542 2355555565666656666655
No 252
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.35 E-value=0.14 Score=59.88 Aligned_cols=56 Identities=14% Similarity=-0.065 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHccC-CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 51 CELQKKAIRHILLRT-HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~-~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
++-|.+++..++.+. +-.+|.++.|+|||.+ +..+...+...| .+|+.++||-.-+
T Consensus 431 s~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~----------l~~l~~~~~~~G--~~V~~lAPTgrAA 487 (1960)
T TIGR02760 431 SPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI----------AQLLLHLASEQG--YEIQIITAGSLSA 487 (1960)
T ss_pred CHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH----------HHHHHHHHHhcC--CeEEEEeCCHHHH
Confidence 578999999998753 5579999999999977 222122222222 3568899998876
No 253
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.33 E-value=0.067 Score=50.78 Aligned_cols=26 Identities=19% Similarity=0.246 Sum_probs=19.6
Q ss_pred HHHHHHHccC--CcEEEEccCCCccccc
Q psy7952 56 KAIRHILLRT--HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 56 ~~~~~~~~~~--~~~ii~apTGsGKT~~ 81 (444)
..+..+++.. .++|+++|+|+|||..
T Consensus 37 ~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 37 KPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred chHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 3455555532 5799999999999977
No 254
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.27 E-value=0.026 Score=61.29 Aligned_cols=56 Identities=16% Similarity=-0.062 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
++-|.+++..+..+++-+++.++.|+|||.+ +..+...+...| .+|+.+.||-.-+
T Consensus 383 s~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~----------l~~~~~~~e~~G--~~V~g~ApTgkAA 438 (1102)
T PRK13826 383 SDEQKTAIEHVAGPARIAAVVGRAGAGKTTM----------MKAAREAWEAAG--YRVVGGALAGKAA 438 (1102)
T ss_pred CHHHHHHHHHHhccCCeEEEEeCCCCCHHHH----------HHHHHHHHHHcC--CeEEEEcCcHHHH
Confidence 5789999999876546789999999999977 222122222223 3458888988777
No 255
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.083 Score=54.07 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=25.2
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
.+.+++||||+|++.... ...+.+.+...++...+|+.|
T Consensus 117 gk~KV~IIDEVh~LS~~A------~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS------FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH------HHHHHHHHhcCCCCcEEEEEE
Confidence 457899999999976422 344555555555556566544
No 256
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.23 E-value=0.099 Score=52.12 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=24.7
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
.+.+++||||+|.+... ....+.+.+..-++...+|+.|
T Consensus 115 ~~~KVvIIDEah~Ls~~------A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNS------AFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHH------HHHHHHHHHhCCCCCeEEEEEe
Confidence 46789999999997542 2344555555555545555544
No 257
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.21 E-value=0.032 Score=56.67 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.++|.+++|+|||..
T Consensus 315 NpL~LyG~sGsGKTHL 330 (617)
T PRK14086 315 NPLFIYGESGLGKTHL 330 (617)
T ss_pred CcEEEECCCCCCHHHH
Confidence 4589999999999966
No 258
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.20 E-value=0.049 Score=49.33 Aligned_cols=18 Identities=6% Similarity=-0.165 Sum_probs=15.3
Q ss_pred ccCCcEEEEccCCCccccc
Q psy7952 63 LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~ 81 (444)
.| +-++|.|+||+|||..
T Consensus 12 ~G-~l~lI~G~~G~GKT~~ 29 (242)
T cd00984 12 PG-DLIIIAARPSMGKTAF 29 (242)
T ss_pred CC-eEEEEEeCCCCCHHHH
Confidence 44 6789999999999976
No 259
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.19 E-value=0.12 Score=55.05 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=27.5
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
.+.+++||||+|.|...+ .+.|.+++...+.+..+|+.|
T Consensus 119 ~~~KV~IIDEad~lt~~a------~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG------FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHHhCCCCCeEEEEEe
Confidence 467899999999986532 355666666666666666665
No 260
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.19 E-value=0.042 Score=49.18 Aligned_cols=16 Identities=6% Similarity=-0.081 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.||+|+|||..
T Consensus 39 ~~lll~G~~G~GKT~l 54 (226)
T TIGR03420 39 RFLYLWGESGSGKSHL 54 (226)
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999977
No 261
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.18 E-value=0.031 Score=47.18 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=29.7
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCC
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAE 239 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~ 239 (444)
...+++||||+|.|... ....+.+.+..-+.+..++++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~------a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE------AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH------HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH------HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 35789999999997542 24666677777777677777776543
No 262
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.11 E-value=0.021 Score=50.13 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++++|+|+|||..
T Consensus 51 ~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTL 66 (233)
T ss_dssp -EEEEESSTTSSHHHH
T ss_pred ceEEEECCCccchhHH
Confidence 4799999999999977
No 263
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.10 E-value=0.2 Score=40.20 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=12.8
Q ss_pred EEEEccCCCccccc
Q psy7952 68 IFVSMPTGAVSLVG 81 (444)
Q Consensus 68 ~ii~apTGsGKT~~ 81 (444)
+++++|+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999977
No 264
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.13 Score=49.56 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=18.9
Q ss_pred HHHHHHHHhhCCccEEEEeccccccccC
Q psy7952 181 HYLLQHLVRYNKLAYIVVDEAHCVSEWG 208 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~iViDE~H~~~~~~ 208 (444)
..+..........-+||+||++.+.+..
T Consensus 112 ~~l~~~~~~~~~~~IvvLDEid~L~~~~ 139 (366)
T COG1474 112 KRLYDNLSKKGKTVIVILDEVDALVDKD 139 (366)
T ss_pred HHHHHHHHhcCCeEEEEEcchhhhcccc
Confidence 3344444444566789999999997654
No 265
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.00 E-value=0.15 Score=53.69 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=13.1
Q ss_pred cE-EEEccCCCccccc
Q psy7952 67 DI-FVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~-ii~apTGsGKT~~ 81 (444)
++ +|.|+||+|||.+
T Consensus 782 nvLYIyG~PGTGKTAT 797 (1164)
T PTZ00112 782 QILYISGMPGTGKTAT 797 (1164)
T ss_pred ceEEEECCCCCCHHHH
Confidence 44 5999999999988
No 266
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.07 Score=52.72 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=15.1
Q ss_pred cEEEEccCCCcccccccc
Q psy7952 67 DIFVSMPTGAVSLVGSVV 84 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~~ 84 (444)
.++++||.|+|||.+|-+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999988543
No 267
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.96 E-value=0.094 Score=43.84 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=15.4
Q ss_pred HHHhhCCccEEEEecccccc
Q psy7952 186 HLVRYNKLAYIVVDEAHCVS 205 (444)
Q Consensus 186 ~~~~~~~~~~iViDE~H~~~ 205 (444)
........+++|+||++.+.
T Consensus 79 ~~~~~~~~~~lviDe~~~~~ 98 (165)
T cd01120 79 RLRERGGDDLIILDELTRLV 98 (165)
T ss_pred HHHhCCCCEEEEEEcHHHHH
Confidence 34445678999999999874
No 268
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.22 Score=50.93 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=27.2
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
..+.+++||||+|.+... ....|.+.+...+.+..+|+.|
T Consensus 116 ~~~~KVvIIDEah~Lt~~------A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA------GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH------HHHHHHHHHhcCCCCeEEEEEe
Confidence 356789999999998642 2355556666666656666666
No 269
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.037 Score=51.64 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccccc
Q psy7952 65 THDIFVSMPTGAVSLVG 81 (444)
Q Consensus 65 ~~~~ii~apTGsGKT~~ 81 (444)
.+.+++.+|+|||||+.
T Consensus 185 PKGVLLYGPPGTGKTLL 201 (406)
T COG1222 185 PKGVLLYGPPGTGKTLL 201 (406)
T ss_pred CCceEeeCCCCCcHHHH
Confidence 37899999999999977
No 270
>KOG0383|consensus
Probab=94.86 E-value=0.024 Score=58.05 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=42.3
Q ss_pred hccCCCCCceEEEEecccchHHHHHHHHHhh---------cCHHHHHHHHHHHh-cC--CccEEEEcCccccc
Q psy7952 293 LGKDNKANNCGIIYCRTREHTTDLADALRRK---------VNKHERSRVQESFM-RG--EINVITATISFGMG 353 (444)
Q Consensus 293 l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~---------~~~~~r~~~~~~f~-~g--~~~vLvaT~~~~~G 353 (444)
+.+....+++++||..-....+-+-+.+... .....|+..+.+|. .| ....|.+|...+.|
T Consensus 624 ~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 624 LKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3333446888888888777776666666554 55677888899987 33 34568888877665
No 271
>PLN03025 replication factor C subunit; Provisional
Probab=94.80 E-value=0.061 Score=51.03 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=23.3
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
..+++|+||+|.+.... ...+.+.+...++..++++.+
T Consensus 99 ~~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEe
Confidence 46899999999975421 244445555555545555433
No 272
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.79 E-value=0.033 Score=52.36 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=29.1
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccC
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATA 238 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~ 238 (444)
...+++|||++|.|.... -+.+.+.+..-+.+..+|++|..+
T Consensus 112 g~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 112 GIAQVVIVDPADAINRAA------CNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred CCcEEEEeccHhhhCHHH------HHHHHHHhhCCCCCCeEEEEECCh
Confidence 356899999999986432 355666666666667777776553
No 273
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.79 E-value=0.13 Score=52.18 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=25.5
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
.+.+++||||+|.+.... ...+.+.+...+.+..+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~a------~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA------FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH------HHHHHHHHhCCCCCEEEEEEe
Confidence 457899999999976422 344555555555556666665
No 274
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.77 E-value=0.22 Score=51.35 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=25.8
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
...+++||||+|+|... ....+.+.+..-+.+..+|+.|
T Consensus 118 g~~KV~IIDEah~Ls~~------a~NALLKtLEEPp~~v~FIL~T 156 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH------SFNALLKTLEEPPEHVKFLLAT 156 (647)
T ss_pred CCCEEEEEechHhCCHH------HHHHHHHHHHcCCCCeEEEEec
Confidence 46789999999998642 2355555555555555566653
No 275
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.73 E-value=0.081 Score=52.31 Aligned_cols=160 Identities=11% Similarity=0.086 Sum_probs=71.7
Q ss_pred HHHHHHcc---CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh---
Q psy7952 57 AIRHILLR---THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV--- 130 (444)
Q Consensus 57 ~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l--- 130 (444)
.++.+..| ..-+++.|+||+|||..|+-.+. ......+ .+|+|++.-. -. .+.+.++
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~---------~~a~~~g--~~v~~fSlEm-~~-----~~l~~Rl~~~ 245 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAE---------NVALREG--KPVLFFSLEM-SA-----EQLGERLLAS 245 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHH---------HHHHhCC--CcEEEEECCC-CH-----HHHHHHHHHH
Confidence 45555543 15689999999999976332111 1111222 2346765221 11 2333333
Q ss_pred cCCCCceeEEEE-eCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh-hCCccEEEEeccccccc-c
Q psy7952 131 TGRSDLYQLELI-VSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR-YNKLAYIVVDEAHCVSE-W 207 (444)
Q Consensus 131 ~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~-~~~~~~iViDE~H~~~~-~ 207 (444)
..+ +....+ .+.....++.........+. +..+.|.....+.-............ ...+++||||=.|.+.. .
T Consensus 246 ~~~---v~~~~~~~~~l~~~~~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~ 321 (421)
T TIGR03600 246 KSG---INTGNIRTGRFNDSDFNRLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTR 321 (421)
T ss_pred HcC---CCHHHHhcCCCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCC
Confidence 122 221111 23334444433333333322 33456554433321111222222222 23699999999998853 2
Q ss_pred CCCcHHHHHHHHHHHHhhC--CCCcEEEEecc
Q psy7952 208 GHDFRPTYRRLGELRQFTG--NSIPIIALTAT 237 (444)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~--~~~~~v~lSAT 237 (444)
+..-...+..+.+-++.+. -+++++++|-.
T Consensus 322 ~~~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQl 353 (421)
T TIGR03600 322 GRDRNEELGGISRGLKALAKELDVPVVLLAQL 353 (421)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCcEEEeccc
Confidence 2222222333333333221 23778887754
No 276
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.73 E-value=0.13 Score=47.57 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=16.7
Q ss_pred HHHccCCcEEEEccCCCccccc
Q psy7952 60 HILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 60 ~~~~~~~~~ii~apTGsGKT~~ 81 (444)
-+..| .-+++.||||+|||..
T Consensus 26 G~~~g-~~~~i~g~~G~GKT~l 46 (271)
T cd01122 26 GLRKG-ELIILTAGTGVGKTTF 46 (271)
T ss_pred EEcCC-cEEEEEcCCCCCHHHH
Confidence 34445 6789999999999976
No 277
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.73 E-value=0.16 Score=49.92 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++++++|+|||.+
T Consensus 96 ~vI~lvG~~GsGKTTt 111 (437)
T PRK00771 96 QTIMLVGLQGSGKTTT 111 (437)
T ss_pred eEEEEECCCCCcHHHH
Confidence 4578999999999987
No 278
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.67 E-value=0.16 Score=52.40 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=26.0
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
..+.+++||||+|.+... ....+.+.+...+..+.+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~------A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS------AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH------HHHHHHHHHHhCCCCcEEEEEe
Confidence 346789999999997532 2344555555555556666655
No 279
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.67 E-value=0.6 Score=44.78 Aligned_cols=16 Identities=19% Similarity=-0.041 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 207 ~ii~lvGptGvGKTTt 222 (407)
T PRK12726 207 RIISLIGQTGVGKTTT 222 (407)
T ss_pred eEEEEECCCCCCHHHH
Confidence 5678999999999977
No 280
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.65 E-value=0.1 Score=53.37 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=15.9
Q ss_pred CcEEEEccCCCcccccccc
Q psy7952 66 HDIFVSMPTGAVSLVGSVV 84 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~ 84 (444)
+.+++++|.|+|||.+|.+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999988544
No 281
>PRK05595 replicative DNA helicase; Provisional
Probab=94.62 E-value=0.15 Score=50.67 Aligned_cols=167 Identities=9% Similarity=0.024 Sum_probs=76.9
Q ss_pred ccCchHHHHHHHHHHccC---CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCcc
Q psy7952 48 SFKCELQKKAIRHILLRT---HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRD 124 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~~~~---~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~ 124 (444)
.+||.++ .++.+..|- .-++|.|.||+|||..|+- .+.+.....+ .+|++++.-..- .
T Consensus 183 gi~tg~~--~ld~~~~G~~~g~liviaarpg~GKT~~al~---------ia~~~a~~~g--~~vl~fSlEms~------~ 243 (444)
T PRK05595 183 GVASGFR--ELDAKTSGFQKGDMILIAARPSMGKTTFALN---------IAEYAALREG--KSVAIFSLEMSK------E 243 (444)
T ss_pred cccCChH--HHHHhcCCCCCCcEEEEEecCCCChHHHHHH---------HHHHHHHHcC--CcEEEEecCCCH------H
Confidence 3455443 566665431 4578899999999976321 1011111222 234676543222 1
Q ss_pred chHhhh---cCCCCceeEEEE-eCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEec
Q psy7952 125 DKTSIV---TGRSDLYQLELI-VSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDE 200 (444)
Q Consensus 125 ~~~~~l---~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE 200 (444)
+.+.++ ..+ +....+ .+.....++.........+. ...+.|-.+..+.-...............+++||||=
T Consensus 244 ~l~~R~~a~~~~---v~~~~~~~~~l~~~e~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDy 319 (444)
T PRK05595 244 QLAYKLLCSEAN---VDMLRLRTGNLEDKDWENIARASGPLA-AAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDY 319 (444)
T ss_pred HHHHHHHHHhcC---CCHHHHhcCCCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeH
Confidence 333333 222 222222 23344444444444433322 2345554333232111222233333345699999999
Q ss_pred cccccccCC-CcH-HHHHHHHHHHHhhC--CCCcEEEEecc
Q psy7952 201 AHCVSEWGH-DFR-PTYRRLGELRQFTG--NSIPIIALTAT 237 (444)
Q Consensus 201 ~H~~~~~~~-~~~-~~~~~l~~~~~~~~--~~~~~v~lSAT 237 (444)
.|.+...+. .-+ ..+..+.+-++.+. -+++++++|-.
T Consensus 320 lql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~vi~lsQL 360 (444)
T PRK05595 320 LQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIALSQL 360 (444)
T ss_pred HHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCeEEEeecc
Confidence 999853221 111 22333333333332 24778877643
No 282
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.55 E-value=1.2 Score=40.81 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=35.1
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHh
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVL 250 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l 250 (444)
..+.++|+||-+-+... -...+..+..+.....+...++.+|||........+.+.+
T Consensus 152 ~~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f 208 (270)
T PRK06731 152 EARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 208 (270)
T ss_pred cCCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHh
Confidence 34689999999977432 1334455555555444434577899998765554444443
No 283
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.54 E-value=0.23 Score=50.34 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=26.4
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
..+.+++||||+|.+... ....+.+.+...+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~------a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ------SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH------HHHHHHHHHhcCCCCceEEEEE
Confidence 356789999999997542 2345555555555556666655
No 284
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.49 E-value=0.31 Score=48.78 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=29.3
Q ss_pred hhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHH
Q psy7952 189 RYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIIS 248 (444)
Q Consensus 189 ~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~ 248 (444)
.+.+.++|+||.+-..... ......+..+... .....++.++++........+.+
T Consensus 425 ~l~~~DLVLIDTaG~s~~D----~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~eii~ 479 (559)
T PRK12727 425 RLRDYKLVLIDTAGMGQRD----RALAAQLNWLRAA-RQVTSLLVLPANAHFSDLDEVVR 479 (559)
T ss_pred HhccCCEEEecCCCcchhh----HHHHHHHHHHHHh-hcCCcEEEEECCCChhHHHHHHH
Confidence 3456899999999764211 1112222222222 22356888888876544444433
No 285
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.47 E-value=0.1 Score=48.97 Aligned_cols=16 Identities=6% Similarity=-0.039 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+++++.||+|+|||..
T Consensus 157 ~gl~L~G~~G~GKThL 172 (306)
T PRK08939 157 KGLYLYGDFGVGKSYL 172 (306)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999966
No 286
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.43 E-value=0.13 Score=51.74 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=16.0
Q ss_pred CcEEEEccCCCcccccccc
Q psy7952 66 HDIFVSMPTGAVSLVGSVV 84 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~ 84 (444)
+.++++||.|+|||.+|-+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999988544
No 287
>PRK06904 replicative DNA helicase; Validated
Probab=94.37 E-value=0.16 Score=50.81 Aligned_cols=152 Identities=11% Similarity=0.079 Sum_probs=69.0
Q ss_pred CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEE-e
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELI-V 143 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~-~ 143 (444)
.-+++.|.||+|||..|+-.+ .......+ .+|+|++.-..- .+.+.++ +.... +....+ .
T Consensus 222 ~LiiIaarPg~GKTafalnia---------~~~a~~~g--~~Vl~fSlEMs~------~ql~~Rlla~~s~-v~~~~i~~ 283 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLC---------ENAAMASE--KPVLVFSLEMPA------EQIMMRMLASLSR-VDQTKIRT 283 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHH---------HHHHHhcC--CeEEEEeccCCH------HHHHHHHHHhhCC-CCHHHhcc
Confidence 557889999999997632111 11111222 234676543322 2344443 11100 222222 3
Q ss_pred C-CCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh-hCCccEEEEeccccccccCC--CcHHHHHHHH
Q psy7952 144 S-GQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR-YNKLAYIVVDEAHCVSEWGH--DFRPTYRRLG 219 (444)
Q Consensus 144 ~-~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~-~~~~~~iViDE~H~~~~~~~--~~~~~~~~l~ 219 (444)
| ..+..++..+......+.....+.|-....+.-.......+.... ...+++||||=.+.+...+. .-...+..+.
T Consensus 284 g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~is 363 (472)
T PRK06904 284 GQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEIS 363 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHH
Confidence 3 345555544443333333334455542111211111222222222 23689999999998854321 1122334444
Q ss_pred HHHHhhCC--CCcEEEEe
Q psy7952 220 ELRQFTGN--SIPIIALT 235 (444)
Q Consensus 220 ~~~~~~~~--~~~~v~lS 235 (444)
+-++.+.+ +++++++|
T Consensus 364 r~LK~lAkel~ipVi~ls 381 (472)
T PRK06904 364 RSLKALAKELKVPVVALS 381 (472)
T ss_pred HHHHHHHHHhCCeEEEEE
Confidence 33333322 47888888
No 288
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.31 E-value=0.051 Score=51.62 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHcc--C--CcEEEEccCCCcccccccc
Q psy7952 52 ELQKKAIRHILLR--T--HDIFVSMPTGAVSLVGSVV 84 (444)
Q Consensus 52 ~~Q~~~~~~~~~~--~--~~~ii~apTGsGKT~~a~~ 84 (444)
|||...++.+... . +-+++++|.|.||+..|..
T Consensus 4 PW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~ 40 (342)
T PRK06964 4 PWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH 40 (342)
T ss_pred cccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH
Confidence 4888888877752 1 4578999999999987543
No 289
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.27 E-value=0.12 Score=50.33 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=24.8
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEecc
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTAT 237 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT 237 (444)
.+..++||||+|.+.... ...+.+.+..-+++..+|+.|.+
T Consensus 116 ~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECC
Confidence 456799999999985422 23444555554554545555544
No 290
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.25 E-value=0.22 Score=47.60 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=20.0
Q ss_pred HHHHHHHHHccCC--cEEEEccCCCcccccc
Q psy7952 54 QKKAIRHILLRTH--DIFVSMPTGAVSLVGS 82 (444)
Q Consensus 54 Q~~~~~~~~~~~~--~~ii~apTGsGKT~~a 82 (444)
..+.+..+...++ +++++||+|+|||..|
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 3334444444434 7999999999999773
No 291
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.22 E-value=0.027 Score=59.71 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc-CC-ccceeEEEcchhhhhcccCccchHh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN-GN-VRSRNGWISPILSSFYLRFRDDKTS 128 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~-~~-~~~~vlil~P~~~L~~~~q~~~~~~ 128 (444)
++-|++++.+ .. .+++|.|.+|||||.+ . ..- +.++.. .+ ...++|+++.|+..+ .+.-+
T Consensus 6 n~~Q~~av~~--~~-g~~lV~AgaGSGKT~~--------L-~~R-ia~Li~~~~v~p~~IL~lTFTnkAA-----~em~~ 67 (715)
T TIGR01075 6 NDKQREAVAA--PP-GNLLVLAGAGSGKTRV--------L-THR-IAWLLSVENASPHSIMAVTFTNKAA-----AEMRH 67 (715)
T ss_pred CHHHHHHHcC--CC-CCEEEEecCCCCHHHH--------H-HHH-HHHHHHcCCCCHHHeEeeeccHHHH-----HHHHH
Confidence 4789998875 23 5899999999999988 1 111 222333 33 234889999999999 77777
Q ss_pred hh
Q psy7952 129 IV 130 (444)
Q Consensus 129 ~l 130 (444)
++
T Consensus 68 Rl 69 (715)
T TIGR01075 68 RI 69 (715)
T ss_pred HH
Confidence 76
No 292
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.10 E-value=0.19 Score=45.01 Aligned_cols=29 Identities=7% Similarity=-0.071 Sum_probs=19.9
Q ss_pred HHHHHHHHHHc---cCCcEEEEccCCCccccc
Q psy7952 53 LQKKAIRHILL---RTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~~~~~---~~~~~ii~apTGsGKT~~ 81 (444)
.....+..+.. ..+.+++++|+|+|||..
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHL 58 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHH
Confidence 34444544433 126799999999999966
No 293
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.03 E-value=0.028 Score=59.59 Aligned_cols=62 Identities=8% Similarity=0.039 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc-CCc-cceeEEEcchhhhhcccCccchHh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN-GNV-RSRNGWISPILSSFYLRFRDDKTS 128 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~-~~~-~~~vlil~P~~~L~~~~q~~~~~~ 128 (444)
++-|++++.+. . .+++|.|.+|||||.+ . ..- +.++.. .+. ..++|+++-|+..+ .+.-+
T Consensus 11 n~~Q~~av~~~--~-g~~lV~AgaGSGKT~v--------l-~~R-ia~Li~~~~v~p~~IL~lTFT~kAA-----~Em~~ 72 (721)
T PRK11773 11 NDKQREAVAAP--L-GNMLVLAGAGSGKTRV--------L-VHR-IAWLMQVENASPYSIMAVTFTNKAA-----AEMRH 72 (721)
T ss_pred CHHHHHHHhCC--C-CCEEEEecCCCCHHHH--------H-HHH-HHHHHHcCCCChhHeEeeeccHHHH-----HHHHH
Confidence 47899998753 3 5899999999999988 1 111 222332 342 34789999999999 77777
Q ss_pred hh
Q psy7952 129 IV 130 (444)
Q Consensus 129 ~l 130 (444)
++
T Consensus 73 Rl 74 (721)
T PRK11773 73 RI 74 (721)
T ss_pred HH
Confidence 76
No 294
>KOG0741|consensus
Probab=94.02 E-value=0.076 Score=52.07 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHhCCcccCchHHHHHHHHHHcc-CCcEEEEccCCCccccc
Q psy7952 28 GGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLR-THDIFVSMPTGAVSLVG 81 (444)
Q Consensus 28 ~~~~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~-~~~~ii~apTGsGKT~~ 81 (444)
+..-.+.++.+.+++.|-..-||.+ .++.+-=. -+.+++.+|+|+|||+.
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~----vie~lGi~HVKGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPE----VIEQLGIKHVKGILLYGPPGTGKTLI 272 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHH----HHHHcCccceeeEEEECCCCCChhHH
Confidence 3344588888999988877777733 23322211 15689999999999988
No 295
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.94 E-value=0.14 Score=53.21 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=24.0
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
....++||||+|.+... ....+.+.+...+....+|+.|
T Consensus 117 g~~KV~IIDEa~~LT~~------A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKS------AFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCHH------HHHHHHHHhhcCCCceEEEEEc
Confidence 56789999999997532 2345555555544444445444
No 296
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.92 E-value=0.47 Score=43.73 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=13.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+++.+|+|+|||.+
T Consensus 73 ~vi~l~G~~G~GKTTt 88 (272)
T TIGR00064 73 NVILFVGVNGVGKTTT 88 (272)
T ss_pred eEEEEECCCCCcHHHH
Confidence 4578889999999977
No 297
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.86 E-value=0.17 Score=52.02 Aligned_cols=39 Identities=10% Similarity=0.229 Sum_probs=24.6
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
.+++++||||+|.+.... ++.+.+.+..-+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a------~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA------FNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHH------HHHHHHhcccCCCCeEEEEEE
Confidence 357899999999986422 344445554445545565554
No 298
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.86 E-value=0.16 Score=48.61 Aligned_cols=42 Identities=7% Similarity=0.068 Sum_probs=27.3
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccC
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATA 238 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~ 238 (444)
....++||||+|.+.... ...+.+.+...+.+..++++|..+
T Consensus 140 g~~rVviIDeAd~l~~~a------anaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA------ANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred CCceEEEEEchhhcCHHH------HHHHHHHHhcCCCCceEEEEECCh
Confidence 467899999999985422 344555555555556666766443
No 299
>KOG0701|consensus
Probab=93.84 E-value=0.037 Score=61.65 Aligned_cols=84 Identities=27% Similarity=0.375 Sum_probs=72.3
Q ss_pred ceEEEEecccchHHHHHHHHHhh----------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCC
Q psy7952 301 NCGIIYCRTREHTTDLADALRRK----------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQN 358 (444)
Q Consensus 301 ~~~iVf~~s~~~~~~l~~~L~~~----------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 358 (444)
-..++|++.+..+....+.++.. -....+.++++.|....+++|++|.++.+|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 45689999888888888877766 11223678899999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHhccCCCC
Q psy7952 359 VRFVVHWGMPSSIPAYYQESGRAGRD 384 (444)
Q Consensus 359 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 384 (444)
++.|+.++.|.....|+|..||+.+.
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccc
Confidence 99999999999999999999999655
No 300
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.84 E-value=0.18 Score=51.77 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=26.0
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
..+.+++||||+|.+... ....+.+.+...+.+..+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~------a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN------AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH------HHHHHHHHHHcCCCCeEEEEEe
Confidence 346789999999997642 2345555555555556666555
No 301
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.78 E-value=0.049 Score=52.82 Aligned_cols=159 Identities=11% Similarity=0.013 Sum_probs=82.6
Q ss_pred CCCCCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccce
Q psy7952 28 GGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSR 107 (444)
Q Consensus 28 ~~~~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~ 107 (444)
....+...+.+.++. .+..|-+ .|.++.-..-.|.+ -|.+-.|||||.+ .+..+ ..+...++..+
T Consensus 144 ~~~~~a~a~l~~ies--kIanfD~-~Q~kaa~~~~~G~q--rIrGLAGSGKT~~--------La~Ka--a~lh~knPd~~ 208 (660)
T COG3972 144 RINLEANALLDTIES--KIANFDT-DQTKAAFQSGFGKQ--RIRGLAGSGKTEL--------LAHKA--AELHSKNPDSR 208 (660)
T ss_pred cccchhHHHHHHHHH--HHhcccc-hhheeeeecCCchh--hhhcccCCCchhH--------HHHHH--HHHhcCCCCce
Confidence 333445555555553 2334443 78887766666633 5788899999988 44333 33556667779
Q ss_pred eEEEcchhhhhcccCccchHhhh-----cCCCCceeE--EEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIV-----TGRSDLYQL--ELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESF 180 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l-----~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~ 180 (444)
++|.+-|+.|+ +|....+..+ ...+++-+. .--.|+.+.......+.... ....+-++--+.-.....
T Consensus 209 I~~Tfftk~L~--s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~---~~~~~~fsg~g~~F~~aC 283 (660)
T COG3972 209 IAFTFFTKILA--STMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYIC---HYYEIPFSGFGNGFDAAC 283 (660)
T ss_pred EEEEeehHHHH--HHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHh---cccccccCCCCcchHHHH
Confidence 99999999998 2223333333 112222222 22223333322222222221 222333331111111112
Q ss_pred HHHHHHHHhhCCccEEEEeccccccc
Q psy7952 181 HYLLQHLVRYNKLAYIVVDEAHCVSE 206 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~iViDE~H~~~~ 206 (444)
..++.......-.++|.|||.+-+.+
T Consensus 284 ~eli~~~~~~~~yD~ilIDE~QDFP~ 309 (660)
T COG3972 284 KELIADINNKKAYDYILIDESQDFPQ 309 (660)
T ss_pred HHHHHhhhccccccEEEecccccCCH
Confidence 33444455566789999999988643
No 302
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.77 E-value=0.15 Score=50.88 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=14.5
Q ss_pred cEEEEccCCCccccccc
Q psy7952 67 DIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~ 83 (444)
.++++||+|+|||..|-
T Consensus 38 ~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 38 AYIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999998844
No 303
>PRK08760 replicative DNA helicase; Provisional
Probab=93.77 E-value=0.17 Score=50.75 Aligned_cols=166 Identities=12% Similarity=0.111 Sum_probs=75.2
Q ss_pred cCchHHHHHHHHHHcc---CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccc
Q psy7952 49 FKCELQKKAIRHILLR---THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDD 125 (444)
Q Consensus 49 ~~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~ 125 (444)
+||.+. .+..+..| ..-++|.|.||+|||..|+-.+ .......+ .+|+|++.-..-. +
T Consensus 212 i~TG~~--~LD~~t~G~~~G~LivIaarPg~GKTafal~iA---------~~~a~~~g--~~V~~fSlEMs~~------q 272 (476)
T PRK08760 212 LPTGYN--DFDAMTAGLQPTDLIILAARPAMGKTTFALNIA---------EYAAIKSK--KGVAVFSMEMSAS------Q 272 (476)
T ss_pred ccCCcH--HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHH---------HHHHHhcC--CceEEEeccCCHH------H
Confidence 454332 45555433 1557899999999997633211 11111222 2346765433222 3
Q ss_pred hHhhh-cCCCCceeEEEE-eCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccc
Q psy7952 126 KTSIV-TGRSDLYQLELI-VSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHC 203 (444)
Q Consensus 126 ~~~~l-~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~ 203 (444)
.+.++ +.... +....+ .|..+..++......+..+. +..+.|.....+.-...............+++||||=.+.
T Consensus 273 l~~Rl~a~~s~-i~~~~i~~g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql 350 (476)
T PRK08760 273 LAMRLISSNGR-INAQRLRTGALEDEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQL 350 (476)
T ss_pred HHHHHHHhhCC-CcHHHHhcCCCCHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHh
Confidence 33343 11100 211111 23444444444433333333 3456555433332222222333333445789999999998
Q ss_pred ccccCC--CcHHHHHHHHHHHHhhCC--CCcEEEEe
Q psy7952 204 VSEWGH--DFRPTYRRLGELRQFTGN--SIPIIALT 235 (444)
Q Consensus 204 ~~~~~~--~~~~~~~~l~~~~~~~~~--~~~~v~lS 235 (444)
+...+. .-...+..+.+-++.+.+ +++++++|
T Consensus 351 ~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~ls 386 (476)
T PRK08760 351 MSVPGNSENRATEISEISRSLKGLAKELNVPVIALS 386 (476)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 853221 111223333333332221 37777777
No 304
>KOG1133|consensus
Probab=93.74 E-value=0.034 Score=55.96 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=33.9
Q ss_pred hCCcccCchHHHHHHHHHHc----cCCcEEEEccCCCcccccccccccc
Q psy7952 44 FGFDSFKCELQKKAIRHILL----RTHDIFVSMPTGAVSLVGSVVSARS 88 (444)
Q Consensus 44 ~g~~~~~t~~Q~~~~~~~~~----~~~~~ii~apTGsGKT~~a~~~~~~ 88 (444)
|+|..-|..+|.+.+..+++ | +-.|+.+|||||||+.-+++++.
T Consensus 10 F~fPy~PYdIQ~~lM~elyrvLe~G-kIgIfESPTGTGKSLSLiCaalt 57 (821)
T KOG1133|consen 10 FPFPYTPYDIQEDLMRELYRVLEEG-KIGIFESPTGTGKSLSLICAALT 57 (821)
T ss_pred cCCCCCchhHHHHHHHHHHHHHhcC-CeeeeeCCCCCCchHHHHHHHHH
Confidence 55554467799998887774 6 77899999999999986666643
No 305
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=93.74 E-value=0.091 Score=54.66 Aligned_cols=59 Identities=12% Similarity=-0.054 Sum_probs=42.7
Q ss_pred CchHHHHHHHHHHcc----CCcEEEEccCCCcccccccccccceEEeCCCcccccc--CCccceeEEEcchhhhhcccCc
Q psy7952 50 KCELQKKAIRHILLR----THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN--GNVRSRNGWISPILSSFYLRFR 123 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~----~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~--~~~~~~vlil~P~~~L~~~~q~ 123 (444)
|+..|..++..+.++ .+..++.+.||+|||+++ .. +.. +.+. ||++|...++
T Consensus 10 ~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~----------a~----~~~~~~~p~---Lvi~~n~~~A----- 67 (655)
T TIGR00631 10 PAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTM----------AN----VIAQVNRPT---LVIAHNKTLA----- 67 (655)
T ss_pred CChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHH----------HH----HHHHhCCCE---EEEECCHHHH-----
Confidence 577899998887654 236679999999999881 11 222 2344 9999999999
Q ss_pred cchHhhh
Q psy7952 124 DDKTSIV 130 (444)
Q Consensus 124 ~~~~~~l 130 (444)
.+....+
T Consensus 68 ~ql~~el 74 (655)
T TIGR00631 68 AQLYNEF 74 (655)
T ss_pred HHHHHHH
Confidence 5666666
No 306
>PRK05748 replicative DNA helicase; Provisional
Probab=93.69 E-value=0.2 Score=49.92 Aligned_cols=168 Identities=10% Similarity=0.080 Sum_probs=74.6
Q ss_pred ccCchHHHHHHHHHHcc---CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCcc
Q psy7952 48 SFKCELQKKAIRHILLR---THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRD 124 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~ 124 (444)
.+||.+ ..++.+..| ..-++|.|+||+|||..|+-.+ .+.....+ .+|++++.-.. . .
T Consensus 185 gi~TG~--~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia---------~~~a~~~g--~~v~~fSlEms-~-----~ 245 (448)
T PRK05748 185 GIPTGF--TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIA---------QNVATKTD--KNVAIFSLEMG-A-----E 245 (448)
T ss_pred CccCCh--HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHH---------HHHHHhCC--CeEEEEeCCCC-H-----H
Confidence 345433 355555543 1558999999999997632211 11111222 23366643222 1 2
Q ss_pred chHhhh-cCCCCceeEE-EEeCCCChhhHHHHHHHHHhcCCCeeEEEE-CCCccccccHHHHHHHHHhhC-CccEEEEec
Q psy7952 125 DKTSIV-TGRSDLYQLE-LIVSGQTKTENKAILEELRLVKPRIKLLYV-TPERAVTESFHYLLQHLVRYN-KLAYIVVDE 200 (444)
Q Consensus 125 ~~~~~l-~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~-Tpe~l~~~~~~~~~~~~~~~~-~~~~iViDE 200 (444)
+.+.++ +... .+... ...+.....++.........+.. ..+.|. +|. +.-..+........... ++++||||=
T Consensus 246 ~l~~R~l~~~~-~v~~~~i~~~~l~~~e~~~~~~a~~~l~~-~~~~i~d~~~-~ti~~i~~~~r~~~~~~~~~~~vvIDy 322 (448)
T PRK05748 246 SLVMRMLCAEG-NIDAQRLRTGQLTDDDWPKLTIAMGSLSD-APIYIDDTPG-IKVTEIRARCRRLAQEHGGLGLILIDY 322 (448)
T ss_pred HHHHHHHHHhc-CCCHHHhhcCCCCHHHHHHHHHHHHHHhc-CCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 333333 1100 02221 11234444444444444433333 345554 333 22111122223333333 789999999
Q ss_pred cccccccCC---CcHHHHHHHHHHHHhhC--CCCcEEEEecc
Q psy7952 201 AHCVSEWGH---DFRPTYRRLGELRQFTG--NSIPIIALTAT 237 (444)
Q Consensus 201 ~H~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~~v~lSAT 237 (444)
.|.+...+. .....+..+.+-++.+. -+++++++|-.
T Consensus 323 L~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~vi~lsQl 364 (448)
T PRK05748 323 LQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIALSQL 364 (448)
T ss_pred chhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeEEEeccc
Confidence 999853221 11122333333332221 23777777754
No 307
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.57 E-value=0.08 Score=48.56 Aligned_cols=149 Identities=14% Similarity=0.091 Sum_probs=70.4
Q ss_pred CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcc---hhhhhcccCccchHhhhcCCCCceeEEEE
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISP---ILSSFYLRFRDDKTSIVTGRSDLYQLELI 142 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P---~~~L~~~~q~~~~~~~l~~~~~~i~~~~~ 142 (444)
.=+++.|+||.|||..|+- .+.+.....+ ..|++++. ...++ ...+... .+ +....+
T Consensus 20 ~L~vi~a~pg~GKT~~~l~---------ia~~~a~~~~--~~vly~SlEm~~~~l~-----~R~la~~-s~---v~~~~i 79 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQ---------IALNAALNGG--YPVLYFSLEMSEEELA-----ARLLARL-SG---VPYNKI 79 (259)
T ss_dssp -EEEEEESTTSSHHHHHHH---------HHHHHHHTTS--SEEEEEESSS-HHHHH-----HHHHHHH-HT---STHHHH
T ss_pred cEEEEEecccCCchHHHHH---------HHHHHHHhcC--CeEEEEcCCCCHHHHH-----HHHHHHh-hc---chhhhh
Confidence 5589999999999977322 2122233322 34477764 33444 3333333 11 111111
Q ss_pred e-CCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh-CCccEEEEecccccccc--CCCcHHHHHH-
Q psy7952 143 V-SGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY-NKLAYIVVDEAHCVSEW--GHDFRPTYRR- 217 (444)
Q Consensus 143 ~-~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~-~~~~~iViDE~H~~~~~--~~~~~~~~~~- 217 (444)
. +.....+..........+....-.+..+|. +............... ..+++||||=+|.+... .......+..
T Consensus 80 ~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~-~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i 158 (259)
T PF03796_consen 80 RSGDLSDEEFERLQAAAEKLSDLPLYIEDTPS-LTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEI 158 (259)
T ss_dssp HCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS--BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHH
T ss_pred hccccCHHHHHHHHHHHHHHhhCcEEEECCCC-CCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHH
Confidence 1 223333333333333333333333344444 2222223333333333 78999999999998552 1122333333
Q ss_pred ---HHHHHHhhCCCCcEEEEecc
Q psy7952 218 ---LGELRQFTGNSIPIIALTAT 237 (444)
Q Consensus 218 ---l~~~~~~~~~~~~~v~lSAT 237 (444)
++.+...+ +.+++++|-.
T Consensus 159 ~~~Lk~lA~~~--~i~vi~~sQl 179 (259)
T PF03796_consen 159 SRELKALAKEL--NIPVIALSQL 179 (259)
T ss_dssp HHHHHHHHHHH--TSEEEEEEEB
T ss_pred HHHHHHHHHHc--CCeEEEcccc
Confidence 34433333 3777777765
No 308
>KOG0734|consensus
Probab=93.57 E-value=0.18 Score=49.60 Aligned_cols=53 Identities=23% Similarity=0.118 Sum_probs=32.9
Q ss_pred CCccEEEEecccccccc-----CCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchH
Q psy7952 191 NKLAYIVVDEAHCVSEW-----GHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVK 243 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~ 243 (444)
.-...|+|||+|.+... .+..+..+..+..-+..|.++-.+|.+.||--+...
T Consensus 395 ~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 395 RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 34678999999998542 111223333344444456667789999999555443
No 309
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.56 E-value=0.2 Score=50.52 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=13.9
Q ss_pred EEEEccCCCccccccc
Q psy7952 68 IFVSMPTGAVSLVGSV 83 (444)
Q Consensus 68 ~ii~apTGsGKT~~a~ 83 (444)
+++++|+|+|||.+|.
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5999999999998843
No 310
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.51 E-value=0.4 Score=46.91 Aligned_cols=15 Identities=13% Similarity=-0.039 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+++++++|+|||.+
T Consensus 102 vi~lvG~~GvGKTTt 116 (429)
T TIGR01425 102 VIMFVGLQGSGKTTT 116 (429)
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999977
No 311
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.51 E-value=0.034 Score=58.09 Aligned_cols=77 Identities=9% Similarity=0.024 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccc-cCC-ccceeEEEcchhhhhcccCccchH
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFIL-NGN-VRSRNGWISPILSSFYLRFRDDKT 127 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~-~~~-~~~~vlil~P~~~L~~~~q~~~~~ 127 (444)
.|+-|++++.. .. .+++|.|..|||||.++ +.. +.++. .++ ...++++++.++..+ .+.-
T Consensus 197 L~~~Q~~av~~--~~-~~~lV~agaGSGKT~vl---------~~r-~ayLl~~~~~~~~~IL~ltft~~AA-----~em~ 258 (684)
T PRK11054 197 LNPSQARAVVN--GE-DSLLVLAGAGSGKTSVL---------VAR-AGWLLARGQAQPEQILLLAFGRQAA-----EEMD 258 (684)
T ss_pred CCHHHHHHHhC--CC-CCeEEEEeCCCCHHHHH---------HHH-HHHHHHhCCCCHHHeEEEeccHHHH-----HHHH
Confidence 46889998864 22 57899999999999881 111 11222 222 234789999999999 6777
Q ss_pred hhh--cCCCCceeEEEEeC
Q psy7952 128 SIV--TGRSDLYQLELIVS 144 (444)
Q Consensus 128 ~~l--~~~~~~i~~~~~~~ 144 (444)
+++ ..+...+.+.++|+
T Consensus 259 eRL~~~lg~~~v~v~TFHS 277 (684)
T PRK11054 259 ERIRERLGTEDITARTFHA 277 (684)
T ss_pred HHHHHhcCCCCcEEEeHHH
Confidence 666 33323356666554
No 312
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.49 E-value=0.31 Score=47.12 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=23.6
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
....++||||+|.+.... ...+.+.+...+.+..+++.|
T Consensus 118 ~~~kviIIDEa~~l~~~a------~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS------FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHH------HHHHHHHHhcCCCCeEEEEEc
Confidence 356799999999975421 234444444445545565554
No 313
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.48 E-value=0.074 Score=45.22 Aligned_cols=39 Identities=10% Similarity=0.025 Sum_probs=19.2
Q ss_pred EEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 69 FVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 69 ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
++.|+-|-|||.+..+++ ..+...+. .+|+|.+|+.+-+
T Consensus 1 VltA~RGRGKSa~lGl~~----------a~l~~~~~-~~I~vtAP~~~~~ 39 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAA----------AALIQKGK-IRILVTAPSPENV 39 (177)
T ss_dssp -EEE-TTSSHHHHHHHCC----------CCSSS------EEEE-SS--S-
T ss_pred CccCCCCCCHHHHHHHHH----------HHHHHhcC-ceEEEecCCHHHH
Confidence 478999999997733322 12333333 3678889999877
No 314
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.41 E-value=0.23 Score=44.47 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccccc
Q psy7952 65 THDIFVSMPTGAVSLVG 81 (444)
Q Consensus 65 ~~~~ii~apTGsGKT~~ 81 (444)
.+++++.+|||+|||..
T Consensus 151 PknVLFyGppGTGKTm~ 167 (368)
T COG1223 151 PKNVLFYGPPGTGKTMM 167 (368)
T ss_pred cceeEEECCCCccHHHH
Confidence 37899999999999976
No 315
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.40 E-value=1.3 Score=43.32 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=32.2
Q ss_pred hhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHh
Q psy7952 189 RYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVL 250 (444)
Q Consensus 189 ~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l 250 (444)
.+.+.++++||.+-+... .......+..+.........++.+|||........+...+
T Consensus 266 ~l~~~d~VLIDTaGrsqr----d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f 323 (420)
T PRK14721 266 ELRGKHMVLIDTVGMSQR----DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY 323 (420)
T ss_pred HhcCCCEEEecCCCCCcc----hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh
Confidence 455678888888633211 1222334444332222334578899998777666655544
No 316
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.32 E-value=0.54 Score=40.66 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=24.0
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
.....+|||||+|.+... ....+.+.+...+++..+|+++
T Consensus 94 ~~~~kviiide~~~l~~~------~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA------AANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHH------HHHHHHHHhcCCCCCeEEEEEE
Confidence 346789999999997542 1244555555444444455544
No 317
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.32 E-value=0.084 Score=50.21 Aligned_cols=42 Identities=5% Similarity=-0.077 Sum_probs=27.8
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccC
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATA 238 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~ 238 (444)
+..+++|||++|.|.... -+.+.+.+.+-+.+..++++|.-+
T Consensus 107 g~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~ 148 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAA------ANALLKTLEEPPENTWFFLACREP 148 (334)
T ss_pred CCceEEEEcchHhhCHHH------HHHHHHHhcCCCCCeEEEEEECCh
Confidence 467899999999986422 255556666655555566666543
No 318
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.32 E-value=0.44 Score=46.73 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=22.3
Q ss_pred HHHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 53 LQKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
.....+..+..+ +++++.+|+|+|||..
T Consensus 183 ~le~l~~~L~~~-~~iil~GppGtGKT~l 210 (459)
T PRK11331 183 TIETILKRLTIK-KNIILQGPPGVGKTFV 210 (459)
T ss_pred HHHHHHHHHhcC-CCEEEECCCCCCHHHH
Confidence 445556666666 8999999999999977
No 319
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.27 E-value=0.12 Score=48.84 Aligned_cols=42 Identities=7% Similarity=-0.049 Sum_probs=27.9
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccC
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATA 238 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~ 238 (444)
+..+++|||++|.|.... ...+.+.+..-+.+..+++.|..+
T Consensus 106 g~~KV~iI~~a~~m~~~A------aNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAA------ANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred CCceEEEEechhhhCHHH------HHHHHHHhcCCCCCeEEEEEECCh
Confidence 467899999999986432 355666666656656566655443
No 320
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.25 E-value=2.1 Score=45.15 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+++|||+|||.+
T Consensus 186 ~Vi~lVGpnGvGKTTT 201 (767)
T PRK14723 186 GVLALVGPTGVGKTTT 201 (767)
T ss_pred eEEEEECCCCCcHHHH
Confidence 3478999999999977
No 321
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.24 E-value=0.4 Score=49.47 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=25.3
Q ss_pred hhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 189 RYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 189 ~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
.+...+++||||+|.+... ....+.+.+..-+....+|+++
T Consensus 124 ~~~~~KVvIIdEad~Lt~~------a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLSTA------AFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred hcCCCEEEEEeChhhcCHH------HHHHHHHHHhCCCCCeEEEEEe
Confidence 3456789999999997542 2344555555544444455554
No 322
>KOG0744|consensus
Probab=93.24 E-value=0.16 Score=46.91 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=19.3
Q ss_pred cccccHHHHHHHHHhhCCccEEEEeccccc
Q psy7952 175 AVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204 (444)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~iViDE~H~~ 204 (444)
+....|..+..-..+.+.+-+|.|||+..+
T Consensus 233 lV~kmF~kI~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 233 LVAKMFQKIQELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeHHHHHH
Confidence 333334444444445667889999999876
No 323
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.24 E-value=0.43 Score=44.49 Aligned_cols=125 Identities=9% Similarity=0.087 Sum_probs=67.9
Q ss_pred cEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc---chhhhhcccCccchHhhh--cCCCCceeEEE
Q psy7952 67 DIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS---PILSSFYLRFRDDKTSIV--TGRSDLYQLEL 141 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~---P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~ 141 (444)
-+++++..|+|||.+ +.-+.+++...|.. ++++ ..|+-+ -+|++.| +.+ +..
T Consensus 141 Vil~vGVNG~GKTTT----------IaKLA~~l~~~g~~---VllaA~DTFRAaA-----iEQL~~w~er~g-----v~v 197 (340)
T COG0552 141 VILFVGVNGVGKTTT----------IAKLAKYLKQQGKS---VLLAAGDTFRAAA-----IEQLEVWGERLG-----VPV 197 (340)
T ss_pred EEEEEecCCCchHhH----------HHHHHHHHHHCCCe---EEEEecchHHHHH-----HHHHHHHHHHhC-----CeE
Confidence 368999999999987 23323445555554 4443 467777 7888888 445 333
Q ss_pred EeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHH
Q psy7952 142 IVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGEL 221 (444)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~ 221 (444)
+.+....+...-.+.. +. ...-.++++|++|=+-++... .+.+..|.++
T Consensus 198 I~~~~G~DpAaVafDA-------------------------i~--~Akar~~DvvliDTAGRLhnk----~nLM~EL~KI 246 (340)
T COG0552 198 ISGKEGADPAAVAFDA-------------------------IQ--AAKARGIDVVLIDTAGRLHNK----KNLMDELKKI 246 (340)
T ss_pred EccCCCCCcHHHHHHH-------------------------HH--HHHHcCCCEEEEeCcccccCc----hhHHHHHHHH
Confidence 3322222222112211 11 112347888999988887543 2334444444
Q ss_pred HHhhCCCC------cEEEEeccCCcchHHH
Q psy7952 222 RQFTGNSI------PIIALTATAEPSVKQD 245 (444)
Q Consensus 222 ~~~~~~~~------~~v~lSAT~~~~~~~~ 245 (444)
.+-..+.. -++.+=||...+..+-
T Consensus 247 ~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 247 VRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred HHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 44333222 2455578877655543
No 324
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=93.20 E-value=0.24 Score=47.59 Aligned_cols=19 Identities=16% Similarity=-0.071 Sum_probs=16.3
Q ss_pred HccCCcEEEEccCCCccccc
Q psy7952 62 LLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 62 ~~~~~~~ii~apTGsGKT~~ 81 (444)
-.| ++.+|.+|.|+|||..
T Consensus 167 GkG-QR~lIvgppGvGKTTL 185 (416)
T PRK09376 167 GKG-QRGLIVAPPKAGKTVL 185 (416)
T ss_pred ccC-ceEEEeCCCCCChhHH
Confidence 356 8999999999999955
No 325
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.15 E-value=0.034 Score=58.26 Aligned_cols=63 Identities=11% Similarity=-0.013 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCc-cceeEEEcchhhhhcccCccchHhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNV-RSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~-~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
++-|++++.+. . .+++|.|.+|||||.+ . ...+...+...+. -.++|+++.|+..+ .+..++
T Consensus 4 n~~Q~~av~~~--~-g~~lV~AgpGSGKT~v--------L-~~Ria~Li~~~~v~p~~IL~lTFT~kAA-----~em~~R 66 (672)
T PRK10919 4 NPGQQQAVEFV--T-GPCLVLAGAGSGKTRV--------I-TNKIAHLIRGCGYQARHIAAVTFTNKAA-----REMKER 66 (672)
T ss_pred CHHHHHHHhCC--C-CCEEEEecCCCCHHHH--------H-HHHHHHHHHhcCCCHHHeeeEechHHHH-----HHHHHH
Confidence 46899998762 3 5899999999999988 2 1221222323343 34789999999999 676666
Q ss_pred h
Q psy7952 130 V 130 (444)
Q Consensus 130 l 130 (444)
+
T Consensus 67 l 67 (672)
T PRK10919 67 V 67 (672)
T ss_pred H
Confidence 6
No 326
>PRK08506 replicative DNA helicase; Provisional
Probab=93.04 E-value=0.27 Score=49.30 Aligned_cols=165 Identities=13% Similarity=0.100 Sum_probs=74.5
Q ss_pred ccCchHHHHHHHHHHccC---CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCcc
Q psy7952 48 SFKCELQKKAIRHILLRT---HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRD 124 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~~~~---~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~ 124 (444)
.+||. ...++.+..|- .-+++.|.||+|||..|+-.+ .+ ....+ .+|+|++.-..- .
T Consensus 174 Gi~TG--~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia---------~~-~~~~g--~~V~~fSlEMs~------~ 233 (472)
T PRK08506 174 GLDTG--FVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMA---------LK-ALNQD--KGVAFFSLEMPA------E 233 (472)
T ss_pred cccCC--hHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHH---------HH-HHhcC--CcEEEEeCcCCH------H
Confidence 34543 33556655431 557899999999997633211 11 11222 234666533222 2
Q ss_pred chHhhh-c--CCCCceeEEE-EeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh-hCCccEEEEe
Q psy7952 125 DKTSIV-T--GRSDLYQLEL-IVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR-YNKLAYIVVD 199 (444)
Q Consensus 125 ~~~~~l-~--~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~-~~~~~~iViD 199 (444)
+.+.++ + .+ +.... ..+.....++.........+.. ..+.|-....+.-.......+.... ...+++||||
T Consensus 234 ql~~Rlla~~s~---v~~~~i~~~~l~~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvID 309 (472)
T PRK08506 234 QLMLRMLSAKTS---IPLQNLRTGDLDDDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVID 309 (472)
T ss_pred HHHHHHHHHhcC---CCHHHHhcCCCCHHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 333333 1 22 21111 1244444444444333333333 3455543222211111222222222 2468999999
Q ss_pred ccccccccCC--CcHHHHHHHHHHHHhhCC--CCcEEEEec
Q psy7952 200 EAHCVSEWGH--DFRPTYRRLGELRQFTGN--SIPIIALTA 236 (444)
Q Consensus 200 E~H~~~~~~~--~~~~~~~~l~~~~~~~~~--~~~~v~lSA 236 (444)
=.+.+...+. .-...+..+.+-++.+.+ +++++++|-
T Consensus 310 yLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ipVi~lsQ 350 (472)
T PRK08506 310 YLQLMSGSGNFKDRHLQISEISRGLKLLARELDIPIIALSQ 350 (472)
T ss_pred ChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 9998853321 112223333333332222 477888873
No 327
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.97 E-value=0.1 Score=49.13 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=28.5
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccC
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATA 238 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~ 238 (444)
+..+++|||++|.|.... -..+.+.+.+-+.+..++++|..+
T Consensus 107 ~~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 107 NGYRLFVIEPADAMNESA------SNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred CCceEEEecchhhhCHHH------HHHHHHHhcCCCCCeEEEEEECCh
Confidence 457899999999986422 355666666666656666666554
No 328
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.97 E-value=0.49 Score=45.71 Aligned_cols=18 Identities=17% Similarity=0.006 Sum_probs=16.0
Q ss_pred ccCCcEEEEccCCCccccc
Q psy7952 63 LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~ 81 (444)
.| +.+.|.+|+|+|||..
T Consensus 167 ~G-q~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KG-QRGLIVAPPKAGKTVL 184 (415)
T ss_pred CC-CEEEEECCCCCChhHH
Confidence 46 8899999999999966
No 329
>PRK05973 replicative DNA helicase; Provisional
Probab=92.92 E-value=0.2 Score=44.98 Aligned_cols=18 Identities=6% Similarity=0.060 Sum_probs=15.4
Q ss_pred CcEEEEccCCCccccccc
Q psy7952 66 HDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~ 83 (444)
.-++|.|+||+|||..|+
T Consensus 65 sl~LIaG~PG~GKT~lal 82 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGL 82 (237)
T ss_pred CEEEEEeCCCCCHHHHHH
Confidence 668999999999998743
No 330
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.89 E-value=0.14 Score=52.93 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=15.7
Q ss_pred CcEEEEccCCCcccccccc
Q psy7952 66 HDIFVSMPTGAVSLVGSVV 84 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~ 84 (444)
+.++++||.|+|||.+|..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4579999999999988543
No 331
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.89 E-value=0.83 Score=48.15 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=18.2
Q ss_pred HHHHHHccC--CcEEEEccCCCccccc
Q psy7952 57 AIRHILLRT--HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~~~--~~~ii~apTGsGKT~~ 81 (444)
.+..+..+. .++++.+|+|+|||..
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKTTL 68 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKTTL 68 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHH
Confidence 444444432 4799999999999977
No 332
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.88 E-value=0.36 Score=45.71 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHcc----CCcEEEEccCCCccccccc
Q psy7952 52 ELQKKAIRHILLR----THDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 52 ~~Q~~~~~~~~~~----~~~~ii~apTGsGKT~~a~ 83 (444)
|||...+..+... .+-+++++|.|.|||..|.
T Consensus 4 PW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 4 PWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 4888888887742 1458999999999998743
No 333
>KOG0738|consensus
Probab=92.87 E-value=0.19 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=18.3
Q ss_pred HHHHHHhhCCccEEEEeccccccc
Q psy7952 183 LLQHLVRYNKLAYIVVDEAHCVSE 206 (444)
Q Consensus 183 ~~~~~~~~~~~~~iViDE~H~~~~ 206 (444)
++..+..+.-.+.|+|||++.+..
T Consensus 295 lLFemARfyAPStIFiDEIDslcs 318 (491)
T KOG0738|consen 295 LLFEMARFYAPSTIFIDEIDSLCS 318 (491)
T ss_pred HHHHHHHHhCCceeehhhHHHHHh
Confidence 455555666789999999999854
No 334
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.86 E-value=0.24 Score=47.73 Aligned_cols=42 Identities=10% Similarity=0.050 Sum_probs=27.1
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccC
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATA 238 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~ 238 (444)
....++||||+|.+... ....+.+.+..-+.+..+|++|..+
T Consensus 140 ~~~kVviIDead~m~~~------aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 140 GGWRVVIVDTADEMNAN------AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CCCEEEEEechHhcCHH------HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 45689999999997532 2345556665555555566666554
No 335
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.84 E-value=0.21 Score=48.95 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=15.5
Q ss_pred CcEEEEccCCCcccccccc
Q psy7952 66 HDIFVSMPTGAVSLVGSVV 84 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~ 84 (444)
+.+++++|+|+|||.+|.+
T Consensus 39 ha~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3488999999999988543
No 336
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.76 E-value=0.076 Score=50.09 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+.|.+.+..+..+..++++.++||+|||..
T Consensus 135 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 164 (319)
T PRK13894 135 AAQREAIIAAVRAHRNILVIGGTGSGKTTL 164 (319)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 678888888777668999999999999965
No 337
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.74 E-value=0.11 Score=59.36 Aligned_cols=58 Identities=19% Similarity=0.054 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHccC-CcEEEEccCCCcccccccccccceEEeCCCccccc--cCCccceeEEEcchhhhh
Q psy7952 51 CELQKKAIRHILLRT-HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFIL--NGNVRSRNGWISPILSSF 118 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~-~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~--~~~~~~~vlil~P~~~L~ 118 (444)
++.|.+|+..++.+. +-++|.+..|+|||.+ +..+...+. ......+|+.++||-.-+
T Consensus 969 t~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~----------l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 969 TSGQRAATRMILESTDRFTVVQGYAGVGKTTQ----------FRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred CHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH----------HHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 689999999999852 5689999999999977 222111121 111223568889998887
No 338
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.70 E-value=0.54 Score=48.01 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=15.7
Q ss_pred CcEEEEccCCCcccccccc
Q psy7952 66 HDIFVSMPTGAVSLVGSVV 84 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~ 84 (444)
+.++++||.|+|||..|..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999988543
No 339
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.69 E-value=0.8 Score=41.19 Aligned_cols=25 Identities=16% Similarity=0.003 Sum_probs=18.6
Q ss_pred HHHHHHccC----CcEEEEccCCCccccc
Q psy7952 57 AIRHILLRT----HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~~~----~~~ii~apTGsGKT~~ 81 (444)
.++.++.|. .-+++.+++|+|||..
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l 41 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVL 41 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHH
Confidence 455665531 5689999999999977
No 340
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.67 E-value=0.11 Score=49.06 Aligned_cols=30 Identities=27% Similarity=0.190 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+.|.+.+..+.....+++++++||||||..
T Consensus 131 ~~~~~~L~~~v~~~~nilI~G~tGSGKTTl 160 (323)
T PRK13833 131 EAQASVIRSAIDSRLNIVISGGTGSGKTTL 160 (323)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 678888888887768999999999999976
No 341
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.55 E-value=0.31 Score=48.04 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=17.6
Q ss_pred HHHHHccC--CcEEEEccCCCccccc
Q psy7952 58 IRHILLRT--HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 58 ~~~~~~~~--~~~ii~apTGsGKT~~ 81 (444)
+..++.+. .++++.||+|+|||..
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtL 52 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTL 52 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHH
Confidence 44444432 4799999999999977
No 342
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.55 E-value=0.086 Score=59.44 Aligned_cols=59 Identities=17% Similarity=0.027 Sum_probs=39.9
Q ss_pred CchHHHHHHHHHHcc-CCcEEEEccCCCcccccccccccceEEeCCCccccc--cCCccceeEEEcchhhhh
Q psy7952 50 KCELQKKAIRHILLR-THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFIL--NGNVRSRNGWISPILSSF 118 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~-~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~--~~~~~~~vlil~P~~~L~ 118 (444)
.|+.|.+|+..++.+ ++-++|.+..|+|||.+ +..++..+. ......+++.++||-..+
T Consensus 836 Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~----------l~~i~~~~~~l~e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 836 LTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ----------FRAVMSAVNMLPESERPRVVGLGPTHRAV 897 (1623)
T ss_pred cCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH----------HHHHHHHHHHHhhccCceEEEEechHHHH
Confidence 357999999999964 25689999999999976 111111111 112223568899998887
No 343
>PRK09165 replicative DNA helicase; Provisional
Probab=92.53 E-value=0.33 Score=48.96 Aligned_cols=168 Identities=13% Similarity=0.065 Sum_probs=77.4
Q ss_pred ccCchHHHHHHHHHHccC---CcEEEEccCCCcccccccccccceEEeCCCccccccC------------CccceeEEEc
Q psy7952 48 SFKCELQKKAIRHILLRT---HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG------------NVRSRNGWIS 112 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~~~~---~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~------------~~~~~vlil~ 112 (444)
.++|.+. -++.+..|- .-++|.|+||+|||..|+-.+.+ . .... ....+|+|++
T Consensus 199 gi~TG~~--~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~-----~----a~~~~~~~~~~~~~~~~~g~~vl~fS 267 (497)
T PRK09165 199 GISTGLR--DLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFN-----A----AKAYRREAQPDGSKKAVNGGVVGFFS 267 (497)
T ss_pred cccCChH--HHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHH-----H----HHhhcccccccccccccCCCeEEEEe
Confidence 3444443 455554431 45799999999999764322111 0 1110 0123457775
Q ss_pred chhhhhcccCccchHhhh---cCCCCceeEEE-EeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH
Q psy7952 113 PILSSFYLRFRDDKTSIV---TGRSDLYQLEL-IVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV 188 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l---~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~ 188 (444)
.-..-. +.+.++ ..+ +.... ..+.....++..+......+. ...+.|-....+.-.......+...
T Consensus 268 lEMs~~------ql~~R~la~~s~---v~~~~i~~~~l~~~e~~~l~~a~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~ 337 (497)
T PRK09165 268 LEMSAE------QLATRILSEQSE---ISSSKIRRGKISEEDFEKLVDASQELQ-KLPLYIDDTPALSISQLRARARRLK 337 (497)
T ss_pred CcCCHH------HHHHHHHHHhcC---CCHHHHhcCCCCHHHHHHHHHHHHHHh-cCCeEEeCCCCCCHHHHHHHHHHHH
Confidence 333222 333443 122 22211 233445555554444443332 3445555433332111122233333
Q ss_pred hhCCccEEEEeccccccccCC---CcH-HHHHHHHHHHHhhC--CCCcEEEEec
Q psy7952 189 RYNKLAYIVVDEAHCVSEWGH---DFR-PTYRRLGELRQFTG--NSIPIIALTA 236 (444)
Q Consensus 189 ~~~~~~~iViDE~H~~~~~~~---~~~-~~~~~l~~~~~~~~--~~~~~v~lSA 236 (444)
....+++||||=.|.+...+. .-+ ..+..+.+-++.+. -+++++++|-
T Consensus 338 ~~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQ 391 (497)
T PRK09165 338 RQHGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQ 391 (497)
T ss_pred HhcCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeec
Confidence 345689999999998853221 111 22333333333332 2367777764
No 344
>PRK05636 replicative DNA helicase; Provisional
Probab=92.53 E-value=0.28 Score=49.38 Aligned_cols=163 Identities=11% Similarity=0.065 Sum_probs=73.7
Q ss_pred cCchHHHHHHHHHHcc---CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcc---hhhhhcccC
Q psy7952 49 FKCELQKKAIRHILLR---THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISP---ILSSFYLRF 122 (444)
Q Consensus 49 ~~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P---~~~L~~~~q 122 (444)
+||.+. -+..+..| ..-+++.|.||+|||..|+-.+ .......+ ..++|++. ...++
T Consensus 248 i~TG~~--~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a---------~~~a~~~g--~~v~~fSlEMs~~ql~---- 310 (505)
T PRK05636 248 IPTGFK--DLDDLTNGLRGGQMIIVAARPGVGKSTLALDFM---------RSASIKHN--KASVIFSLEMSKSEIV---- 310 (505)
T ss_pred eecChH--HHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHH---------HHHHHhCC--CeEEEEEeeCCHHHHH----
Confidence 455433 45555443 1456889999999996632211 11111222 23466643 33333
Q ss_pred ccchHhhhcCCCCceeEEE-EeCCCChhhHHHHHHHHHhcCCCeeEEEE-CCCccccccHHHHHHHHHhhCCccEEEEec
Q psy7952 123 RDDKTSIVTGRSDLYQLEL-IVSGQTKTENKAILEELRLVKPRIKLLYV-TPERAVTESFHYLLQHLVRYNKLAYIVVDE 200 (444)
Q Consensus 123 ~~~~~~~l~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~-Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE 200 (444)
...+... .+ ++... ..+..+..++..+...+..+. +..+.|- +|. +.-.......+.......+++||||=
T Consensus 311 -~R~ls~~-s~---v~~~~i~~g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~-~ti~~I~~~~r~~~~~~~~~lvvIDY 383 (505)
T PRK05636 311 -MRLLSAE-AE---VRLSDMRGGKMDEDAWEKLVQRLGKIA-QAPIFIDDSAN-LTMMEIRSKARRLKQKHDLKLIVVDY 383 (505)
T ss_pred -HHHHHHh-cC---CCHHHHhcCCCCHHHHHHHHHHHHHHh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 2222211 11 11111 133445555555444444333 3445554 333 21111122223333345699999999
Q ss_pred cccccccC--CCcHHHHHHHHHHHHhhCC--CCcEEEEe
Q psy7952 201 AHCVSEWG--HDFRPTYRRLGELRQFTGN--SIPIIALT 235 (444)
Q Consensus 201 ~H~~~~~~--~~~~~~~~~l~~~~~~~~~--~~~~v~lS 235 (444)
.|.+.... ..-...+..+.+-++.+.+ +++++++|
T Consensus 384 Lql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~ls 422 (505)
T PRK05636 384 LQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAIS 422 (505)
T ss_pred hHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 99985321 1111223333333333322 47788887
No 345
>PRK08840 replicative DNA helicase; Provisional
Probab=92.48 E-value=0.34 Score=48.36 Aligned_cols=166 Identities=8% Similarity=0.036 Sum_probs=74.5
Q ss_pred ccCchHHHHHHHHHHcc---CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCcc
Q psy7952 48 SFKCELQKKAIRHILLR---THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRD 124 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~ 124 (444)
.++|.+. .++.+..| .+-+++.|.||.|||..|+-.+. ......+ ..|+|++.-..-.
T Consensus 199 gi~TG~~--~LD~~~~G~~~g~LiviaarPg~GKTafalnia~---------~~a~~~~--~~v~~fSlEMs~~------ 259 (464)
T PRK08840 199 GVDTGFT--DLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCE---------NAAMDQD--KPVLIFSLEMPAE------ 259 (464)
T ss_pred CcCCCcH--HHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHH---------HHHHhCC--CeEEEEeccCCHH------
Confidence 4555543 44444433 15578899999999976322111 1111222 2346665332222
Q ss_pred chHhhh---cCCCCceeEEEE-eCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh-hCCccEEEEe
Q psy7952 125 DKTSIV---TGRSDLYQLELI-VSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR-YNKLAYIVVD 199 (444)
Q Consensus 125 ~~~~~l---~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~-~~~~~~iViD 199 (444)
+.+.++ ..+ +....+ .+..+..++.........+.....+.|-....+.-.......+.... ...+++||||
T Consensus 260 ql~~Rlla~~s~---v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvID 336 (464)
T PRK08840 260 QLMMRMLASLSR---VDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVD 336 (464)
T ss_pred HHHHHHHHhhCC---CCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 333333 112 221111 33445555554443333332233455542211211111222222222 2358999999
Q ss_pred ccccccccCC--CcHHHHHHHHHHHHhhC--CCCcEEEEe
Q psy7952 200 EAHCVSEWGH--DFRPTYRRLGELRQFTG--NSIPIIALT 235 (444)
Q Consensus 200 E~H~~~~~~~--~~~~~~~~l~~~~~~~~--~~~~~v~lS 235 (444)
=.|.+...+. .-...+..+.+-++.+. -+++++++|
T Consensus 337 YLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~Ls 376 (464)
T PRK08840 337 YLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALS 376 (464)
T ss_pred cHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 9998853221 11122333433333332 247788887
No 346
>KOG0991|consensus
Probab=92.46 E-value=0.16 Score=44.55 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=16.1
Q ss_pred ccC-CcEEEEccCCCccccc
Q psy7952 63 LRT-HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 63 ~~~-~~~ii~apTGsGKT~~ 81 (444)
+|+ .++++.+|+|+|||..
T Consensus 45 ~gnmP~liisGpPG~GKTTs 64 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTS 64 (333)
T ss_pred cCCCCceEeeCCCCCchhhH
Confidence 343 6799999999999988
No 347
>PRK08006 replicative DNA helicase; Provisional
Probab=92.45 E-value=0.38 Score=48.06 Aligned_cols=165 Identities=8% Similarity=0.020 Sum_probs=75.9
Q ss_pred cCchHHHHHHHHHHcc---CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccc
Q psy7952 49 FKCELQKKAIRHILLR---THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDD 125 (444)
Q Consensus 49 ~~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~ 125 (444)
++|.+. .++.+..| ..-++|.|.||+|||..|+-.+ .......+ .+|+|++.-..-. +
T Consensus 207 i~TG~~--~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia---------~~~a~~~g--~~V~~fSlEM~~~------q 267 (471)
T PRK08006 207 VNTGYD--DLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLC---------ENAAMLQD--KPVLIFSLEMPGE------Q 267 (471)
T ss_pred ccCCCH--HHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHH---------HHHHHhcC--CeEEEEeccCCHH------H
Confidence 455443 44444433 1557889999999996632211 11111222 2346665432222 3
Q ss_pred hHhhh---cCCCCceeEEEE-eCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh-hCCccEEEEec
Q psy7952 126 KTSIV---TGRSDLYQLELI-VSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR-YNKLAYIVVDE 200 (444)
Q Consensus 126 ~~~~l---~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~-~~~~~~iViDE 200 (444)
.+.++ ..+ +....+ .+..+..++..+......+.....+.|-....+.-.......+.... ...+++||||=
T Consensus 268 l~~Rlla~~~~---v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDY 344 (471)
T PRK08006 268 IMMRMLASLSR---VDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDY 344 (471)
T ss_pred HHHHHHHHhcC---CCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 33444 122 222222 34455555555444443332334455543222211111222222222 23699999999
Q ss_pred cccccccC--CCcHHHHHHHHHHHHhhC--CCCcEEEEe
Q psy7952 201 AHCVSEWG--HDFRPTYRRLGELRQFTG--NSIPIIALT 235 (444)
Q Consensus 201 ~H~~~~~~--~~~~~~~~~l~~~~~~~~--~~~~~v~lS 235 (444)
.|.+...+ ..-...+..+.+-++.+. -++++|++|
T Consensus 345 Lqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~Ls 383 (471)
T PRK08006 345 LQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALS 383 (471)
T ss_pred HHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 99885321 111223344433333332 247888888
No 348
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.43 E-value=0.84 Score=46.75 Aligned_cols=169 Identities=13% Similarity=0.142 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
.+.+.+.|+..|+...+. ..+++...+ +-.++..|=-.|||.... +. +..+...-..-+|++.+
T Consensus 228 a~r~~~~lk~~Fdi~~~s----~~~~~~fkq--k~tVflVPRR~GKTwivv---------~i-I~~ll~s~~Gi~IgytA 291 (738)
T PHA03368 228 AERVERFLRTVFNTPLFS----DAAVRHFRQ--RATVFLVPRRHGKTWFLV---------PL-IALALATFRGIKIGYTA 291 (738)
T ss_pred HHHHHHHHHHHcCCcccc----HHHHHHhhc--cceEEEecccCCchhhHH---------HH-HHHHHHhCCCCEEEEEc
Confidence 566778888888877533 234555444 567888899999998622 22 11122222234569999
Q ss_pred chhhhhcccCccchHhhh----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCC--eeEEEECCCccccccHHHHHHH
Q psy7952 113 PILSSFYLRFRDDKTSIV----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPR--IKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
|.+..+ +..++++ ...++.-.+....|. ... + .+.++ ..|.+++.- ..+
T Consensus 292 H~~~ts-----~~vF~eI~~~le~~f~~~~v~~vkGe-~I~-----i----~f~nG~kstI~FaSar----------ntN 346 (738)
T PHA03368 292 HIRKAT-----EPVFEEIGARLRQWFGASRVDHVKGE-TIS-----F----SFPDGSRSTIVFASSH----------NTN 346 (738)
T ss_pred CcHHHH-----HHHHHHHHHHHhhhcchhheeeecCc-EEE-----E----EecCCCccEEEEEecc----------CCC
Confidence 999888 5555555 111111112122221 110 0 00111 244454311 111
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHh
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVL 250 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l 250 (444)
...-..++++|+|||+.+.+. .+..+.-.+. ..++++|++|.|-.......+...+
T Consensus 347 siRGqtfDLLIVDEAqFIk~~------al~~ilp~l~--~~n~k~I~ISS~Ns~~~sTSFL~nL 402 (738)
T PHA03368 347 GIRGQDFNLLFVDEANFIRPD------AVQTIMGFLN--QTNCKIIFVSSTNTGKASTSFLYNL 402 (738)
T ss_pred CccCCcccEEEEechhhCCHH------HHHHHHHHHh--ccCccEEEEecCCCCccchHHHHhh
Confidence 122237899999999997542 2333333322 2358899999997775555544433
No 349
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.36 E-value=0.11 Score=48.74 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+-|.+.+..+..+..++++++|||||||..
T Consensus 119 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 148 (299)
T TIGR02782 119 AAQRDVLREAVLARKNILVVGGTGSGKTTL 148 (299)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 567777777777658999999999999976
No 350
>PRK07004 replicative DNA helicase; Provisional
Probab=92.33 E-value=0.43 Score=47.63 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=75.2
Q ss_pred cCchHHHHHHHHHHcc---CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc---chhhhhcccC
Q psy7952 49 FKCELQKKAIRHILLR---THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS---PILSSFYLRF 122 (444)
Q Consensus 49 ~~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~---P~~~L~~~~q 122 (444)
+||.+. -++.+..| ..-+++.|.||+|||..|+-.+ .+.....+ ..++|++ +...|+
T Consensus 196 i~TG~~--~LD~~t~G~~~g~liviaarpg~GKT~~al~ia---------~~~a~~~~--~~v~~fSlEM~~~ql~---- 258 (460)
T PRK07004 196 TPTGFV--DLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIG---------EYVAVEYG--LPVAVFSMEMPGTQLA---- 258 (460)
T ss_pred ccCCcH--HhcccccCCCCCceEEEEeCCCCCccHHHHHHH---------HHHHHHcC--CeEEEEeCCCCHHHHH----
Confidence 454433 44444432 1568899999999997632211 11111222 2336664 333343
Q ss_pred ccchHhhhcCCCCceeEEEE-eCCCChhhHHHHHHHHHhcCCCeeEEEE-CCCccccccHHHHHHHHHh-hCCccEEEEe
Q psy7952 123 RDDKTSIVTGRSDLYQLELI-VSGQTKTENKAILEELRLVKPRIKLLYV-TPERAVTESFHYLLQHLVR-YNKLAYIVVD 199 (444)
Q Consensus 123 ~~~~~~~l~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Iiv~-Tpe~l~~~~~~~~~~~~~~-~~~~~~iViD 199 (444)
...+... .+ +....+ .|.....++..+...+..+. +..+.|. +|. +.............. ...+++||||
T Consensus 259 -~R~la~~-~~---v~~~~i~~g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~-~~~~~i~~~~r~l~~~~~~~~lviID 331 (460)
T PRK07004 259 -MRMLGSV-GR---LDQHRMRTGRLTDEDWPKLTHAVQKMS-EAQLFIDETGG-LNPMELRSRARRLARQCGKLGLIIID 331 (460)
T ss_pred -HHHHHhh-cC---CCHHHHhcCCCCHHHHHHHHHHHHHHh-cCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 2222221 11 221111 34555555555554444443 3445554 333 221111222222222 2458999999
Q ss_pred ccccccccC--CCcHHHHHHHHHHHHhhC--CCCcEEEEec
Q psy7952 200 EAHCVSEWG--HDFRPTYRRLGELRQFTG--NSIPIIALTA 236 (444)
Q Consensus 200 E~H~~~~~~--~~~~~~~~~l~~~~~~~~--~~~~~v~lSA 236 (444)
=.|.+...+ ..-...+..+.+-++.+. -+++++++|-
T Consensus 332 YLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQ 372 (460)
T PRK07004 332 YLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQ 372 (460)
T ss_pred hhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 999985322 112222333333333332 2377888773
No 351
>PRK04195 replication factor C large subunit; Provisional
Probab=92.30 E-value=0.29 Score=49.35 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.||+|+|||..
T Consensus 40 ~~lLL~GppG~GKTtl 55 (482)
T PRK04195 40 KALLLYGPPGVGKTSL 55 (482)
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999977
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.30 E-value=1.4 Score=41.73 Aligned_cols=58 Identities=9% Similarity=0.142 Sum_probs=30.4
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHh---hCCCCcEEEEeccCCcchHHHHHHH
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQF---TGNSIPIIALTATAEPSVKQDIISV 249 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~v~lSAT~~~~~~~~~~~~ 249 (444)
.++++||||=+-++..... ....+..+.+..+. ..+...++.++||...........+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~-l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTN-LMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHH-HHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 5688999998877532111 22233333333221 1222357889999665544444433
No 353
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.26 E-value=0.46 Score=47.98 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=26.2
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
...+++||||+|.+... ....+.+.+...++...+|+.+
T Consensus 116 ~~~KVvIIDEad~Lt~~------A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKE------AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHH------HHHHHHHHHhhcCCceEEEEEE
Confidence 46789999999997542 2345555555556656666655
No 354
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.24 E-value=0.26 Score=53.02 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=20.4
Q ss_pred HHHHHHHHH----cc-CCcEEEEccCCCccccc
Q psy7952 54 QKKAIRHIL----LR-THDIFVSMPTGAVSLVG 81 (444)
Q Consensus 54 Q~~~~~~~~----~~-~~~~ii~apTGsGKT~~ 81 (444)
|..-+..+. ++ ..+.++++|+|+|||.+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAV 224 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHH
Confidence 555555554 32 26899999999999977
No 355
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.21 E-value=4.5 Score=39.57 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=33.8
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhC---CCCcEEEEeccCCcchHHHHHHHh
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTG---NSIPIIALTATAEPSVKQDIISVL 250 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~v~lSAT~~~~~~~~~~~~l 250 (444)
...++|+||=+-+... -...+..+..+..... +.-.++.+|||........+...+
T Consensus 298 ~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 5678999997655321 2244455555555432 224578999998876655555544
No 356
>PRK06321 replicative DNA helicase; Provisional
Probab=92.19 E-value=0.41 Score=47.85 Aligned_cols=167 Identities=9% Similarity=0.117 Sum_probs=78.1
Q ss_pred ccCchHHHHHHHHHHccC---CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc---chhhhhccc
Q psy7952 48 SFKCELQKKAIRHILLRT---HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS---PILSSFYLR 121 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~~~~---~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~---P~~~L~~~~ 121 (444)
.+||.+. -++.+..|- .=++|.|.||+|||..|+- .+.......+ ..|+|++ |...|+
T Consensus 208 Gi~tG~~--~LD~~t~Gl~~G~LiiiaarPgmGKTafal~---------ia~~~a~~~g--~~v~~fSLEMs~~ql~--- 271 (472)
T PRK06321 208 GIPTHFI--DLDKMINGFSPSNLMILAARPAMGKTALALN---------IAENFCFQNR--LPVGIFSLEMTVDQLI--- 271 (472)
T ss_pred ccccCcH--HHHHHhcCCCCCcEEEEEeCCCCChHHHHHH---------HHHHHHHhcC--CeEEEEeccCCHHHHH---
Confidence 4565543 566665531 4468899999999976322 1011111212 2346665 333444
Q ss_pred CccchHhhhcCCCCceeEEEE-eCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEec
Q psy7952 122 FRDDKTSIVTGRSDLYQLELI-VSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDE 200 (444)
Q Consensus 122 q~~~~~~~l~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE 200 (444)
...+.. ..+ +....+ .+.....++.........+.. ..+.|-....+.-..+....+.......+++||||=
T Consensus 272 --~Rlla~-~s~---v~~~~i~~~~l~~~e~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDy 344 (472)
T PRK06321 272 --HRIICS-RSE---VESKKISVGDLSGRDFQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDY 344 (472)
T ss_pred --HHHHHh-hcC---CCHHHhhcCCCCHHHHHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 222211 112 222222 344445555544444444333 345554222221111222233333345689999999
Q ss_pred cccccccC-----CCcHHHHHHHHHHHHhhCC--CCcEEEEecc
Q psy7952 201 AHCVSEWG-----HDFRPTYRRLGELRQFTGN--SIPIIALTAT 237 (444)
Q Consensus 201 ~H~~~~~~-----~~~~~~~~~l~~~~~~~~~--~~~~v~lSAT 237 (444)
.+.+...+ ..-...+..+.+-++.+.+ +++++++|-.
T Consensus 345 Lql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel~vpVi~lsQL 388 (472)
T PRK06321 345 LQLLSGSGNLRNSESRQTEISEISRMLKNLARELNIPILCLSQL 388 (472)
T ss_pred hHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 99885322 1112233334333333322 4788888754
No 357
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.15 E-value=0.39 Score=47.76 Aligned_cols=25 Identities=4% Similarity=-0.093 Sum_probs=18.3
Q ss_pred HHHHHHccC---CcEEEEccCCCccccc
Q psy7952 57 AIRHILLRT---HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~~~---~~~ii~apTGsGKT~~ 81 (444)
.+..+..|- .-++|.|+||+|||..
T Consensus 184 ~LD~~~~G~~~G~l~vi~g~pg~GKT~~ 211 (434)
T TIGR00665 184 DLDKLTSGLQPSDLIILAARPSMGKTAF 211 (434)
T ss_pred hhHhhcCCCCCCeEEEEEeCCCCChHHH
Confidence 556655431 5579999999999976
No 358
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.10 E-value=0.2 Score=48.92 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=28.5
Q ss_pred cEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 67 DIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
++++.||||+|||.. +.+|. +...+. .++|+=|.-++.
T Consensus 1 H~lv~g~tGsGKt~~--------~viP~----ll~~~~--s~vv~D~Kge~~ 38 (384)
T cd01126 1 HVLVFAPTRSGKGVG--------FVIPN----LLTWPG--SVVVLDPKGENF 38 (384)
T ss_pred CeeEecCCCCCCccE--------EEccc----hhcCCC--CEEEEccchhHH
Confidence 578999999999999 88888 443332 336666888887
No 359
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.98 E-value=0.15 Score=51.20 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=36.8
Q ss_pred hHHHHHHHHHH-----ccC---CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 52 ELQKKAIRHIL-----LRT---HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 52 ~~Q~~~~~~~~-----~~~---~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
|||.-.+..++ .|. +.+++..|=|.|||..+...++ |.+ +..+.....++++++++.-+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~l--y~l------~~~g~~~~~i~~~A~~~~QA 67 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIAL--YML------FLDGEPGAEIYCAANTRDQA 67 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHH--HHH------hcCCccCceEEEEeCCHHHH
Confidence 47777766666 121 4578899999999977332211 111 12233445678899999888
No 360
>KOG0298|consensus
Probab=91.97 E-value=0.073 Score=57.27 Aligned_cols=152 Identities=14% Similarity=0.034 Sum_probs=82.9
Q ss_pred CcEEEEccCCCcccccccccccceEEeCCCc-----------cccccCCccceeEEEcchhhhhcccCccchHhhh-cCC
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPPGA-----------DFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGR 133 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~-----------~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~ 133 (444)
.++++.--.|.|||...++..+ +..|... ..+...|.+ ||+||.--|. |-+... ..-
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l--~~~~k~~~~~cS~~~~e~~n~~~tgaT---LII~P~aIl~------QW~~EI~kH~ 443 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILEL--SDLPKLCPSCCSELVKEGENLVETGAT---LIICPNAILM------QWFEEIHKHI 443 (1394)
T ss_pred cceeehhhhhccchHHHHHHHH--hcccccchhhhhHHHhcccceeecCce---EEECcHHHHH------HHHHHHHHhc
Confidence 5567777779999977433322 1122200 111123455 9999998887 555555 222
Q ss_pred CCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH---Hh-------h-C-----CccEEE
Q psy7952 134 SDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL---VR-------Y-N-----KLAYIV 197 (444)
Q Consensus 134 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~---~~-------~-~-----~~~~iV 197 (444)
.+.+++..+.|-........ .+ -..+|||++|++.|.++..+..-.+. .. . + .+=.|+
T Consensus 444 ~~~lKv~~Y~Girk~~~~~~--~e----l~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIc 517 (1394)
T KOG0298|consen 444 SSLLKVLLYFGIRKTFWLSP--FE----LLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRIC 517 (1394)
T ss_pred cccceEEEEechhhhcccCc--hh----hhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHh
Confidence 22278887777543221111 11 24799999999999765433211000 00 0 0 134579
Q ss_pred EeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcch
Q psy7952 198 VDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSV 242 (444)
Q Consensus 198 iDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~ 242 (444)
+||++++-... ....++...++. ...-+.|+||...+
T Consensus 518 lDEaQMvesss-------S~~a~M~~rL~~-in~W~VTGTPiq~I 554 (1394)
T KOG0298|consen 518 LDEAQMVESSS-------SAAAEMVRRLHA-INRWCVTGTPIQKI 554 (1394)
T ss_pred hhHHHhhcchH-------HHHHHHHHHhhh-hceeeecCCchhhh
Confidence 99999975422 222222222332 44569999998773
No 361
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=91.91 E-value=0.068 Score=56.30 Aligned_cols=63 Identities=13% Similarity=-0.018 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC-ccceeEEEcchhhhhcccCccchHhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN-VRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~-~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
++-|.+++.. .. .+++|.|.+|||||.+ . +..+.+.+...+ ...++++++.|+..+ .+.-++
T Consensus 3 n~~Q~~av~~--~~-~~~~V~Ag~GSGKT~~--------L-~~ri~~ll~~~~~~p~~IL~vTFt~~Aa-----~em~~R 65 (664)
T TIGR01074 3 NPQQQEAVEY--VT-GPCLVLAGAGSGKTRV--------I-TNKIAYLIQNCGYKARNIAAVTFTNKAA-----REMKER 65 (664)
T ss_pred CHHHHHHHhC--CC-CCEEEEecCCCCHHHH--------H-HHHHHHHHHhcCCCHHHeEEEeccHHHH-----HHHHHH
Confidence 4679888875 23 6899999999999988 2 222122232333 234788888888888 566555
Q ss_pred h
Q psy7952 130 V 130 (444)
Q Consensus 130 l 130 (444)
+
T Consensus 66 l 66 (664)
T TIGR01074 66 V 66 (664)
T ss_pred H
Confidence 5
No 362
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.59 E-value=0.15 Score=46.14 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHhCCcccCchHHHHHHHHHHcc--C--CcEEEEccCCCccccc
Q psy7952 40 LKALFGFDSFKCELQKKAIRHILLR--T--HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 40 l~~~~g~~~~~t~~Q~~~~~~~~~~--~--~~~ii~apTGsGKT~~ 81 (444)
|.+..|-+... -|.+.+-.+... . .++++.+|+|.|||..
T Consensus 25 l~efiGQ~~vk--~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTL 68 (332)
T COG2255 25 LDEFIGQEKVK--EQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTL 68 (332)
T ss_pred HHHhcChHHHH--HHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHH
Confidence 34433555433 355554444432 1 5799999999999976
No 363
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.57 E-value=0.29 Score=47.73 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++++|+|+|||..
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 6799999999999977
No 364
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.56 E-value=0.11 Score=44.46 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=27.4
Q ss_pred cCCCeeEEEECCCccccccHHHHHHHHH-hhCCccEEEEeccccccc
Q psy7952 161 VKPRIKLLYVTPERAVTESFHYLLQHLV-RYNKLAYIVVDEAHCVSE 206 (444)
Q Consensus 161 ~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~-~~~~~~~iViDE~H~~~~ 206 (444)
....++|+|+++..+..+... .... ...+-.+|||||||.+.+
T Consensus 116 ~~~~adivi~~y~yl~~~~~~---~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIR---KSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHH---HHHCT--CCCEEEEETTGGGCGG
T ss_pred hcccCCEEEeCHHHHhhHHHH---hhhccccccCcEEEEecccchHH
Confidence 356789999998888653321 1111 123447899999999865
No 365
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.52 E-value=0.46 Score=48.64 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=15.3
Q ss_pred CcEEEEccCCCcccccccc
Q psy7952 66 HDIFVSMPTGAVSLVGSVV 84 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~ 84 (444)
+-++++||.|+|||.+|-+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4478999999999988443
No 366
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.48 E-value=0.56 Score=47.99 Aligned_cols=58 Identities=3% Similarity=-0.019 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHHccC-CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 50 KCELQKKAIRHILLRT-HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~-~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
++|||.+.++.+.... +.+.+..++-+|||.+++.++ + | .....+ ..++++.||..++
T Consensus 17 ~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~-g-~--------~i~~~P-~~~l~v~Pt~~~a 75 (557)
T PF05876_consen 17 RTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWI-G-Y--------SIDQDP-GPMLYVQPTDDAA 75 (557)
T ss_pred CChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhc-e-E--------EEEeCC-CCEEEEEEcHHHH
Confidence 3679999999988754 678999999999998733222 1 1 112222 1349999999998
No 367
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.43 E-value=3.4 Score=41.27 Aligned_cols=16 Identities=19% Similarity=0.054 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+.+|||+|||.+
T Consensus 257 ~Vi~LvGpnGvGKTTT 272 (484)
T PRK06995 257 GVFALMGPTGVGKTTT 272 (484)
T ss_pred cEEEEECCCCccHHHH
Confidence 4588999999999988
No 368
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.28 E-value=0.27 Score=50.54 Aligned_cols=42 Identities=21% Similarity=0.130 Sum_probs=31.5
Q ss_pred ccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 63 LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
.+.+++++.||||+|||.. +.+|. +..-+.+ ++|+=|--++.
T Consensus 156 ~g~~hvLviapTgSGKg~g--------~VIPn----LL~~~~S--~VV~DpKGEl~ 197 (606)
T PRK13897 156 DGFQHALLFAPTGSGKGVG--------FVIPN----LLFWEDS--VVVHDIKLENY 197 (606)
T ss_pred cCCceEEEEcCCCCCcceE--------Eehhh----HHhCCCC--EEEEeCcHHHH
Confidence 3447899999999999999 88999 4443333 35566877887
No 369
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.18 E-value=0.2 Score=50.44 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=29.3
Q ss_pred CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
.++++.||||+|||.. +.+|. +...+.. ++|.=|--+|.
T Consensus 45 ~h~lvig~tgSGKt~~--------~viP~----ll~~~~s--~iV~D~KgEl~ 83 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTS--------FVIPN----LLNYPGS--MIVTDPKGELY 83 (469)
T ss_pred eEEEEEeCCCCCccce--------eeHhH----HHhccCC--EEEEECCCcHH
Confidence 3799999999999999 88888 4443323 35666888887
No 370
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=91.12 E-value=0.27 Score=51.40 Aligned_cols=61 Identities=10% Similarity=-0.024 Sum_probs=43.0
Q ss_pred CchHHHHHHHHHHcc----CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccc
Q psy7952 50 KCELQKKAIRHILLR----THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDD 125 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~----~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~ 125 (444)
|++.|..++..+.++ .++.++.+.+|+|||+. + .. +... ....+|||+|+...+ .+
T Consensus 13 ~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~l--------i--a~----l~~~-~~r~vLIVt~~~~~A-----~~ 72 (652)
T PRK05298 13 PAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFT--------M--AN----VIAR-LQRPTLVLAHNKTLA-----AQ 72 (652)
T ss_pred CChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHH--------H--HH----HHHH-hCCCEEEEECCHHHH-----HH
Confidence 578999999888653 23577999999999977 1 11 2221 112459999999999 56
Q ss_pred hHhhh
Q psy7952 126 KTSIV 130 (444)
Q Consensus 126 ~~~~l 130 (444)
....+
T Consensus 73 l~~dL 77 (652)
T PRK05298 73 LYSEF 77 (652)
T ss_pred HHHHH
Confidence 66666
No 371
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.04 E-value=1.5 Score=43.60 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=24.1
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
...+++||||+|.+... ....+.+.+...+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~------~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE------AFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHH------HHHHHHHHhhcCCCCceEEEEe
Confidence 46789999999997532 2344555555544445555544
No 372
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.02 E-value=1.1 Score=46.32 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccccc
Q psy7952 66 HDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~ 83 (444)
+.++++||.|+|||.+|-
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~ 56 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTAR 56 (585)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346999999999998843
No 373
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=90.92 E-value=0.46 Score=42.51 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=68.1
Q ss_pred HHHccC--CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCc
Q psy7952 60 HILLRT--HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDL 136 (444)
Q Consensus 60 ~~~~~~--~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~ 136 (444)
.+++|. ++++++++.|+|||-. +.+++......+-. +|=++...|. .+.+.+..+ ...
T Consensus 45 ~Fl~G~pannvLL~G~rGtGKSSl----------Vkall~~y~~~GLR---lIev~k~~L~---~l~~l~~~l~~~~--- 105 (249)
T PF05673_consen 45 QFLQGLPANNVLLWGARGTGKSSL----------VKALLNEYADQGLR---LIEVSKEDLG---DLPELLDLLRDRP--- 105 (249)
T ss_pred HHHcCCCCcceEEecCCCCCHHHH----------HHHHHHHHhhcCce---EEEECHHHhc---cHHHHHHHHhcCC---
Confidence 444542 7899999999999965 33323335556666 7777777765 123444444 334
Q ss_pred eeEEEEeCCCChhhHHHHHHHHHhc-------CCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccc
Q psy7952 137 YQLELIVSGQTKTENKAILEELRLV-------KPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHC 203 (444)
Q Consensus 137 i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~ 203 (444)
.+...+..+.+.......+..++.. .+..-++++|..+- +.+...+.+... +.=||+|.
T Consensus 106 ~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR-----HLv~E~~~d~~~---~~~~eih~ 171 (249)
T PF05673_consen 106 YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR-----HLVPESFSDRED---IQDDEIHP 171 (249)
T ss_pred CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh-----hccchhhhhccC---CCccccCc
Confidence 5667777777665555555544432 33345677886652 333333333333 55667776
No 374
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=90.88 E-value=0.3 Score=42.49 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=23.8
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCC-CCcEEEEeccCCcchHHHHH
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGN-SIPIIALTATAEPSVKQDII 247 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~v~lSAT~~~~~~~~~~ 247 (444)
.-.++|+||||.+.................+..... +.-++++|=.+. .+...++
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~-~id~~ir 134 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPS-QIDKFIR 134 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GG-GB-HHHH
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHH-HHhHHHH
Confidence 568999999999854221101111222233333333 244667665553 3444444
No 375
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=90.87 E-value=0.27 Score=49.79 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 89 ~giLL~GppGtGKT~l 104 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLL 104 (495)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5799999999999977
No 376
>PRK10867 signal recognition particle protein; Provisional
Probab=90.83 E-value=1.3 Score=43.65 Aligned_cols=15 Identities=20% Similarity=0.023 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+++++|+|+|||.+
T Consensus 102 vI~~vG~~GsGKTTt 116 (433)
T PRK10867 102 VIMMVGLQGAGKTTT 116 (433)
T ss_pred EEEEECCCCCcHHHH
Confidence 478999999999987
No 377
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=90.83 E-value=0.084 Score=56.14 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCcc-ceeEEEcchhhhhcccCccchHhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVR-SRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~-~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
++-|++++.+. . .+++|.|..|||||.+ .. .-+...+...+.. .++|+++-|+..+ .+..++
T Consensus 6 n~~Q~~av~~~--~-g~~lV~AgaGSGKT~~--------l~-~ria~Li~~~~i~P~~IL~lTFT~kAA-----~em~~R 68 (726)
T TIGR01073 6 NPEQREAVKTT--E-GPLLIMAGAGSGKTRV--------LT-HRIAHLIAEKNVAPWNILAITFTNKAA-----REMKER 68 (726)
T ss_pred CHHHHHHHhCC--C-CCEEEEeCCCCCHHHH--------HH-HHHHHHHHcCCCCHHHeeeeeccHHHH-----HHHHHH
Confidence 47899998753 3 5899999999999988 21 1112222233333 4789999998887 666666
Q ss_pred h
Q psy7952 130 V 130 (444)
Q Consensus 130 l 130 (444)
+
T Consensus 69 l 69 (726)
T TIGR01073 69 V 69 (726)
T ss_pred H
Confidence 5
No 378
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=90.76 E-value=0.12 Score=48.93 Aligned_cols=16 Identities=6% Similarity=-0.270 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+++++|+|+|||+.
T Consensus 149 lgllL~GPPGcGKTll 164 (413)
T PLN00020 149 LILGIWGGKGQGKSFQ 164 (413)
T ss_pred eEEEeeCCCCCCHHHH
Confidence 4578999999999977
No 379
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=90.76 E-value=2 Score=44.28 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=27.4
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchH
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVK 243 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~ 243 (444)
.++++|+|||+.+.. ..+..+.-.+.. .+.+++.+|.+-....+
T Consensus 294 ~~DLLIVDEAAfI~~------~~l~aIlP~l~~--~~~k~IiISS~~~~~s~ 337 (752)
T PHA03333 294 NPDLVIVDEAAFVNP------GALLSVLPLMAV--KGTKQIHISSPVDADSW 337 (752)
T ss_pred CCCEEEEECcccCCH------HHHHHHHHHHcc--CCCceEEEeCCCCcchH
Confidence 579999999999753 223344333332 34677888877654443
No 380
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=90.76 E-value=0.11 Score=58.27 Aligned_cols=63 Identities=17% Similarity=0.047 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
|+-|++++.. .+ ++++|.|..|||||.+ .. ..++..+..+....++++++-|+..+ .+.-.++
T Consensus 3 t~~Q~~ai~~--~~-~~~lv~A~AGsGKT~~--------lv-~r~~~~~~~~~~~~~il~~tFt~~aa-----~e~~~ri 65 (1232)
T TIGR02785 3 TDEQWQAIYT--RG-QNILVSASAGSGKTAV--------LV-ERIIKKILRGVDIDRLLVVTFTNAAA-----REMKERI 65 (1232)
T ss_pred CHHHHHHHhC--CC-CCEEEEecCCCcHHHH--------HH-HHHHHHHhcCCCHhhEEEEeccHHHH-----HHHHHHH
Confidence 5789999983 55 8999999999999988 21 11122233332335789999999998 6766665
No 381
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.73 E-value=0.21 Score=49.18 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHccCC-cEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILLRTH-DIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~-~~ii~apTGsGKT~~ 81 (444)
+.|...+..++...+ -+++.+|||||||.+
T Consensus 244 ~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 244 PFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 578888888887643 479999999999987
No 382
>CHL00176 ftsH cell division protein; Validated
Probab=90.71 E-value=0.52 Score=48.90 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5799999999999977
No 383
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.70 E-value=0.25 Score=42.78 Aligned_cols=30 Identities=20% Similarity=0.116 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+-|.+.+.........+++.+|||+|||..
T Consensus 12 ~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 12 PLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 678888887777658999999999999966
No 384
>KOG1132|consensus
Probab=90.68 E-value=5.4 Score=42.04 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=45.2
Q ss_pred CceEEEEecccchHHHHHHHHHhh----------------cCHHHHHHHHHHHh--------cCCccEEEEcCccccccc
Q psy7952 300 NNCGIIYCRTREHTTDLADALRRK----------------VNKHERSRVQESFM--------RGEINVITATISFGMGID 355 (444)
Q Consensus 300 ~~~~iVf~~s~~~~~~l~~~L~~~----------------~~~~~r~~~~~~f~--------~g~~~vLvaT~~~~~Gid 355 (444)
...++||+++-...+++....... -++.+-.+++..|. .|..-..||-...++|+|
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 445999999988777774444332 12222233344443 233456788899999999
Q ss_pred cCC--ccEEEEeCCCC
Q psy7952 356 RQN--VRFVVHWGMPS 369 (444)
Q Consensus 356 i~~--~~~Vi~~~~p~ 369 (444)
..+ .+.||..|.|.
T Consensus 641 FsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPY 656 (945)
T ss_pred ccccCCceeEEecCCC
Confidence 964 66799999875
No 385
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=0.1 Score=47.94 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.1
Q ss_pred CcEEEEccCCCcccccccc
Q psy7952 66 HDIFVSMPTGAVSLVGSVV 84 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~ 84 (444)
.|+++.+|||||||+.|-.
T Consensus 98 SNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred ccEEEECCCCCcHHHHHHH
Confidence 5799999999999988443
No 386
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.62 E-value=0.36 Score=52.17 Aligned_cols=16 Identities=6% Similarity=-0.105 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.+.++++|+|+|||.+
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 5899999999999977
No 387
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=90.60 E-value=0.21 Score=45.09 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=55.4
Q ss_pred ccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCC-CChhhHHHHHHHHHhcCCCeeEEEECCCccccccHH
Q psy7952 104 VRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSG-QTKTENKAILEELRLVKPRIKLLYVTPERAVTESFH 181 (444)
Q Consensus 104 ~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~ 181 (444)
..|.+||++.+--=+ .+..+.+ .+......+..+... ....++...+. ....+|.||||+++. .
T Consensus 125 gsP~~lvvs~SalRa-----~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~-----~~~~~i~vGTP~Rl~----k 190 (252)
T PF14617_consen 125 GSPHVLVVSSSALRA-----ADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLK-----KTRVHIAVGTPGRLS----K 190 (252)
T ss_pred CCCEEEEEcchHHHH-----HHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHH-----hCCceEEEeChHHHH----H
Confidence 446778888776656 5677766 332111334334333 35555555553 357899999999985 3
Q ss_pred HHHHHHHhhCCccEEEEecccc
Q psy7952 182 YLLQHLVRYNKLAYIVVDEAHC 203 (444)
Q Consensus 182 ~~~~~~~~~~~~~~iViDE~H~ 203 (444)
.+-.....+.++.+||+|--|.
T Consensus 191 Lle~~~L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 191 LLENGALSLSNLKRIVLDWSYL 212 (252)
T ss_pred HHHcCCCCcccCeEEEEcCCcc
Confidence 3445556678899999998765
No 388
>PHA02542 41 41 helicase; Provisional
Probab=90.54 E-value=0.8 Score=45.79 Aligned_cols=35 Identities=6% Similarity=-0.046 Sum_probs=22.8
Q ss_pred CcccCchHHHHHHHHHHc-cC---CcEEEEccCCCcccccc
Q psy7952 46 FDSFKCELQKKAIRHILL-RT---HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 46 ~~~~~t~~Q~~~~~~~~~-~~---~~~ii~apTGsGKT~~a 82 (444)
...+||. ..-+..+.. |- .-+++.|+||+|||..|
T Consensus 169 ~~gi~TG--~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfa 207 (473)
T PHA02542 169 ANKIPFK--LEILNKITKGGAERKTLNVLLAGVNVGKSLGL 207 (473)
T ss_pred CCccCCC--cHHHHHhccCCCCCCcEEEEEcCCCccHHHHH
Confidence 3344553 346666663 21 44788999999999773
No 389
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.54 E-value=0.28 Score=53.01 Aligned_cols=16 Identities=6% Similarity=-0.105 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.+.++++|+|+|||.+
T Consensus 195 ~n~lL~G~pGvGKT~l 210 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAI 210 (852)
T ss_pred CceEEEcCCCCCHHHH
Confidence 6899999999999977
No 390
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.40 E-value=0.57 Score=45.25 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=19.2
Q ss_pred HHHHHHccC----CcEEEEccCCCccccc
Q psy7952 57 AIRHILLRT----HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~~~----~~~ii~apTGsGKT~~ 81 (444)
-++.++.|. .-+++.+++|+|||..
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStL 98 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTL 98 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHH
Confidence 566666541 5589999999999977
No 391
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.35 E-value=0.095 Score=47.12 Aligned_cols=14 Identities=21% Similarity=0.005 Sum_probs=12.4
Q ss_pred EEEEccCCCccccc
Q psy7952 68 IFVSMPTGAVSLVG 81 (444)
Q Consensus 68 ~ii~apTGsGKT~~ 81 (444)
++|+|++|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999977
No 392
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=90.19 E-value=0.23 Score=43.29 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=20.0
Q ss_pred HHHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 53 LQKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
.-.+|+.-+..|.+++++.+|+|+|||..
T Consensus 10 ~aKrAL~iAAaG~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 10 EAKRALEIAAAGGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp HHHHHHHHHHHCC--EEEES-CCCTHHHH
T ss_pred HHHHHHHHHHcCCCCeEEECCCCCCHHHH
Confidence 34456666666669999999999999977
No 393
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.08 E-value=0.19 Score=46.38 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=20.7
Q ss_pred HHHHHHHccCCcEEEEccCCCccccc
Q psy7952 56 KAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 56 ~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
..+..++.++++++++||+|+|||..
T Consensus 24 ~ll~~l~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 24 YLLDLLLSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHHHHHHHCTEEEEEESSTTSSHHHH
T ss_pred HHHHHHHHcCCcEEEECCCCCchhHH
Confidence 34555555558999999999999977
No 394
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.04 E-value=1.2 Score=47.34 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=18.6
Q ss_pred HHHHHHHc-cCCcEEEEccCCCccccc
Q psy7952 56 KAIRHILL-RTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 56 ~~~~~~~~-~~~~~ii~apTGsGKT~~ 81 (444)
+++..+.+ ...++++.+|+|+|||..
T Consensus 197 ~~i~iL~r~~~~n~LLvGppGvGKT~l 223 (758)
T PRK11034 197 RAIQVLCRRRKNNPLLVGESGVGKTAI 223 (758)
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHH
Confidence 34443333 236899999999999977
No 395
>KOG2170|consensus
Probab=90.03 E-value=1.6 Score=40.14 Aligned_cols=57 Identities=11% Similarity=0.108 Sum_probs=36.9
Q ss_pred HhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCC-------CCcEEEEeccCCcchHHHHHHHh
Q psy7952 188 VRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGN-------SIPIIALTATAEPSVKQDIISVL 250 (444)
Q Consensus 188 ~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~v~lSAT~~~~~~~~~~~~l 250 (444)
.....=+++|+||++.|.. ..++.|.-+++..+. +.-+|++|.+-...+.+...+..
T Consensus 174 v~~C~rslFIFDE~DKmp~------gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~ 237 (344)
T KOG2170|consen 174 VQACQRSLFIFDEVDKLPP------GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENA 237 (344)
T ss_pred HHhcCCceEEechhhhcCH------hHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHH
Confidence 3345668999999999743 345666666664332 13478999887766665555544
No 396
>KOG0733|consensus
Probab=90.02 E-value=0.96 Score=45.54 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++++|+|+|||..
T Consensus 224 rGvLlHGPPGCGKT~l 239 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSL 239 (802)
T ss_pred CceeeeCCCCccHHHH
Confidence 6799999999999976
No 397
>PRK07773 replicative DNA helicase; Validated
Probab=89.99 E-value=0.77 Score=49.95 Aligned_cols=33 Identities=6% Similarity=-0.112 Sum_probs=21.5
Q ss_pred ccCchHHHHHHHHHHccC---CcEEEEccCCCcccccc
Q psy7952 48 SFKCELQKKAIRHILLRT---HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~~~~---~~~ii~apTGsGKT~~a 82 (444)
.+||. ...++.+..|- .-++|.|+||+|||..|
T Consensus 199 Gi~TG--~~~LD~l~~Gl~~G~livIagrPg~GKT~fa 234 (886)
T PRK07773 199 GVPTG--FTELDAMTNGLHPGQLIIVAARPSMGKTTFG 234 (886)
T ss_pred CccCC--hhHhccccCCCCCCcEEEEEeCCCCCcHHHH
Confidence 34543 33555555431 44789999999999763
No 398
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.95 E-value=1.3 Score=41.80 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.||+|+|||.+
T Consensus 39 ~~~ll~G~~G~GKt~~ 54 (319)
T PRK00440 39 PHLLFAGPPGTGKTTA 54 (319)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3599999999999977
No 399
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=89.91 E-value=0.42 Score=46.67 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 180 kgvLL~GppGTGKT~L 195 (398)
T PTZ00454 180 RGVLLYGPPGTGKTML 195 (398)
T ss_pred ceEEEECCCCCCHHHH
Confidence 7799999999999977
No 400
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.86 E-value=0.47 Score=50.56 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 488 ~giLL~GppGtGKT~l 503 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLL 503 (733)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5689999999999977
No 401
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.84 E-value=0.82 Score=43.13 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=27.1
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccC
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATA 238 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~ 238 (444)
...+++|||++|.|.... ...+.+.+..-+ +..++++|..+
T Consensus 123 ~~~kVvII~~ae~m~~~a------aNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 123 APRKVVVIEDAETMNEAA------ANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred CCceEEEEEchhhcCHHH------HHHHHHHHhCCC-CCeEEEEECCh
Confidence 467999999999985422 355556666555 46566666543
No 402
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=89.82 E-value=0.45 Score=49.34 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=31.3
Q ss_pred cCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 64 RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 64 ~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
|+.++++.||||+|||.. +.+|. +...+.. ++++=|..++.
T Consensus 223 g~~H~Lv~ApTgsGKt~g--------~VIPn----LL~~~gS--~VV~DpKgEl~ 263 (641)
T PRK13822 223 GSTHGLVFAGSGGFKTTS--------VVVPT----ALKWGGP--LVVLDPSTEVA 263 (641)
T ss_pred CCceEEEEeCCCCCccce--------Eehhh----hhcCCCC--EEEEeCcHHHH
Confidence 347899999999999999 89998 5554434 25555888876
No 403
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.79 E-value=0.83 Score=45.40 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=19.7
Q ss_pred HHHHHHccC----CcEEEEccCCCcccccc
Q psy7952 57 AIRHILLRT----HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 57 ~~~~~~~~~----~~~ii~apTGsGKT~~a 82 (444)
-++.++.|. .-+++.+++|+|||..+
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~ 97 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLL 97 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHH
Confidence 566666541 56799999999999773
No 404
>PHA02533 17 large terminase protein; Provisional
Probab=89.72 E-value=1 Score=45.79 Aligned_cols=57 Identities=9% Similarity=-0.052 Sum_probs=38.1
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
.++|.+.+..+..+ +-.++..+=..|||.++...++. ..+... ...+++++|+..-+
T Consensus 61 ~p~Q~~i~~~~~~~-R~~ii~~aRq~GKStl~a~~al~--------~a~~~~--~~~v~i~A~~~~QA 117 (534)
T PHA02533 61 RDYQKDMLKIMHKN-RFNACNLSRQLGKTTVVAIFLLH--------YVCFNK--DKNVGILAHKASMA 117 (534)
T ss_pred cHHHHHHHHHHhcC-eEEEEEEcCcCChHHHHHHHHHH--------HHHhCC--CCEEEEEeCCHHHH
Confidence 57999999887655 55678888999999884322111 011122 23678899988877
No 405
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.72 E-value=1.2 Score=47.40 Aligned_cols=16 Identities=6% Similarity=-0.049 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.+|+|+|||..
T Consensus 204 ~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAI 219 (731)
T ss_pred CceEEECCCCCCHHHH
Confidence 6899999999999977
No 406
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.64 E-value=3.2 Score=35.23 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=12.7
Q ss_pred EEEEccCCCccccc
Q psy7952 68 IFVSMPTGAVSLVG 81 (444)
Q Consensus 68 ~ii~apTGsGKT~~ 81 (444)
+++.+|+|+|||..
T Consensus 3 ~~~~G~~G~GKTt~ 16 (173)
T cd03115 3 ILLVGLQGVGKTTT 16 (173)
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999977
No 407
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.54 E-value=1.4 Score=41.60 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=23.9
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
..++||+||+|.+... .....+..++...+.+.++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~-----~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLA-----DAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCH-----HHHHHHHHHHHhcCCCceEEEEc
Confidence 5689999999987321 12234455555556656666644
No 408
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=89.53 E-value=0.27 Score=48.02 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=22.8
Q ss_pred HHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 54 QKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 54 Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
=++++.....|.++.++.+|+|||||..
T Consensus 187 AKrAleiAAAGgHnLl~~GpPGtGKTml 214 (490)
T COG0606 187 AKRALEIAAAGGHNLLLVGPPGTGKTML 214 (490)
T ss_pred HHHHHHHHHhcCCcEEEecCCCCchHHh
Confidence 3456666667779999999999999976
No 409
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.50 E-value=0.24 Score=45.45 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=19.2
Q ss_pred HHHHHHccCCcEEEEccCCCcccccc
Q psy7952 57 AIRHILLRTHDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 57 ~~~~~~~~~~~~ii~apTGsGKT~~a 82 (444)
++..+..+ +++++.+|+|+|||..|
T Consensus 14 ~l~~l~~g-~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 14 ALRYLKSG-YPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHhcC-CeEEEEcCCCCCHHHHH
Confidence 33344456 89999999999999873
No 410
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.38 E-value=2.7 Score=41.38 Aligned_cols=15 Identities=13% Similarity=0.003 Sum_probs=13.6
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+++++++|+|||.+
T Consensus 101 vi~~vG~~GsGKTTt 115 (428)
T TIGR00959 101 VILMVGLQGSGKTTT 115 (428)
T ss_pred EEEEECCCCCcHHHH
Confidence 478999999999987
No 411
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.36 E-value=1.4 Score=44.40 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=13.7
Q ss_pred EEEEccCCCccccccc
Q psy7952 68 IFVSMPTGAVSLVGSV 83 (444)
Q Consensus 68 ~ii~apTGsGKT~~a~ 83 (444)
+++.||.|+|||.+|-
T Consensus 41 yLf~Gp~G~GKTtlAr 56 (486)
T PRK14953 41 YIFAGPRGTGKTTIAR 56 (486)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998743
No 412
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=88.93 E-value=1.2 Score=42.35 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=27.4
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEecc
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTAT 237 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT 237 (444)
....+++||||+|.+.... ...+.+.+..-+++..+|+.|..
T Consensus 108 ~~~~kvviI~~a~~~~~~a------~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA------ANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred ccCceEEEeehHhhhCHHH------HHHHHHHhcCCCCCceEEEEeCC
Confidence 3467899999999975422 34555666665665666665543
No 413
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.92 E-value=2.1 Score=44.48 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=24.9
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
....+++||||+|.+... ....+.+.+...+.+..+|+.|
T Consensus 119 ~~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEe
Confidence 346789999999998542 2345555555555544454444
No 414
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=88.89 E-value=0.45 Score=49.55 Aligned_cols=41 Identities=27% Similarity=0.147 Sum_probs=30.5
Q ss_pred cCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 64 RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 64 ~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
+++++++.||||+|||.. +.+|. +..-+.+ ++|+=|--++.
T Consensus 138 ~~~hvlviApTgSGKgvg--------~VIPn----LL~~~gS--~VV~DpKGE~~ 178 (670)
T PRK13850 138 EQPHSLVVAPTRAGKGVG--------VVIPT----LLTFKGS--VIALDVKGELF 178 (670)
T ss_pred CCceEEEEecCCCCceee--------ehHhH----HhcCCCC--EEEEeCCchHH
Confidence 346899999999999999 88888 4443322 35666777777
No 415
>PRK10689 transcription-repair coupling factor; Provisional
Probab=88.88 E-value=1.9 Score=48.11 Aligned_cols=81 Identities=7% Similarity=0.143 Sum_probs=61.7
Q ss_pred eeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 107 RNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 107 ~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
+++|++|+..-+ ....+.+....+...+..+||+++..++.....+.. .+..+|+|+|. +...
T Consensus 811 qv~vf~n~i~~i-----e~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr--~Gk~~VLVaTd----------Iier 873 (1147)
T PRK10689 811 QVYYLYNDVENI-----QKAAERLAELVPEARIAIGHGQMRERELERVMNDFH--HQRFNVLVCTT----------IIET 873 (1147)
T ss_pred eEEEEECCHHHH-----HHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHH--hcCCCEEEECc----------hhhc
Confidence 569999999877 555555522222278899999999998888887776 47899999991 2445
Q ss_pred HHhhCCccEEEEeccccc
Q psy7952 187 LVRYNKLAYIVVDEAHCV 204 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~ 204 (444)
-.+..++++||++.++++
T Consensus 874 GIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 874 GIDIPTANTIIIERADHF 891 (1147)
T ss_pred ccccccCCEEEEecCCCC
Confidence 567788999999999874
No 416
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.84 E-value=0.39 Score=45.81 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=21.4
Q ss_pred HHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 54 QKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 54 Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
....+..+.....++++.+|||||||..
T Consensus 151 ~~~~l~~~v~~~~nilI~G~tGSGKTTl 178 (344)
T PRK13851 151 LEAFLHACVVGRLTMLLCGPTGSGKTTM 178 (344)
T ss_pred HHHHHHHHHHcCCeEEEECCCCccHHHH
Confidence 3445555555558999999999999966
No 417
>KOG0733|consensus
Probab=88.68 E-value=0.71 Score=46.43 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++++|+|+|||+.
T Consensus 546 sGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLL 561 (802)
T ss_pred CceEEeCCCCccHHHH
Confidence 5699999999999977
No 418
>KOG0732|consensus
Probab=88.48 E-value=0.62 Score=50.14 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=35.3
Q ss_pred hhCCccEEEEeccccccc----cCC-CcHHHHHHHHHHHHhhCCCCcEEEEeccCCcch
Q psy7952 189 RYNKLAYIVVDEAHCVSE----WGH-DFRPTYRRLGELRQFTGNSIPIIALTATAEPSV 242 (444)
Q Consensus 189 ~~~~~~~iViDE~H~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~ 242 (444)
.......|.+||++-+.- +.. .-...+..+..++..++...|++..+||..+..
T Consensus 360 ~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda 418 (1080)
T KOG0732|consen 360 QKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDA 418 (1080)
T ss_pred hccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccc
Confidence 345678999999995421 111 112344556677777777789999999965533
No 419
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.35 E-value=1.1 Score=47.74 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++++|+|+|||..
T Consensus 213 ~giLL~GppGtGKT~l 228 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLL 228 (733)
T ss_pred ceEEEECCCCCChHHH
Confidence 6799999999999976
No 420
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=88.35 E-value=1.2 Score=52.47 Aligned_cols=59 Identities=15% Similarity=0.032 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHccC-CcEEEEccCCCcccccccccccceEE--eCCCccccccCCccceeEEEcchhhhh
Q psy7952 50 KCELQKKAIRHILLRT-HDIFVSMPTGAVSLVGSVVSARSRVR--IPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~-~~~ii~apTGsGKT~~a~~~~~~~~~--~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
.|+.|.+|+..++.+. +-++|.++.|+|||.+ +. ...+.+.+...+ .+|+.++||...+
T Consensus 1020 Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~--------l~~~~~~i~~~~~~~g--~~v~glApT~~Aa 1081 (1960)
T TIGR02760 1020 LTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTM--------LESRYKPVLQAFESEQ--LQVIGLAPTHEAV 1081 (1960)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHh--------HHHHHHHHHHHHHhcC--CeEEEEeChHHHH
Confidence 3689999999998763 4568899999999977 10 011111122222 3468889998877
No 421
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=88.25 E-value=1.2 Score=42.11 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=27.0
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEec
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTA 236 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSA 236 (444)
....+||+||++.+... ....+.+.....+.+.++++.+-
T Consensus 108 ~~~kviiidead~mt~~------A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED------AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH------HHHHHHHHhccCCCCeEEEEEcC
Confidence 46789999999998542 23555555556666666666664
No 422
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.20 E-value=0.44 Score=45.30 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=20.8
Q ss_pred HHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 55 KKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 55 ~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
...+..+..+..+++++++||||||..
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTF 176 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHH
Confidence 344555555558999999999999966
No 423
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=88.17 E-value=0.41 Score=49.79 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=31.0
Q ss_pred cCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 64 RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 64 ~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
+.+++++.||||+|||.. +.+|. +...+.+ ++|+=|--++.
T Consensus 174 g~~HvlviapTgSGKgvg--------~ViPn----LL~~~~S--~VV~D~KGE~~ 214 (636)
T PRK13880 174 GPEHVLTYAPTRSGKGVG--------LVVPT----LLSWGHS--SVITDLKGELW 214 (636)
T ss_pred CCceEEEEecCCCCCceE--------EEccc----hhhCCCC--EEEEeCcHHHH
Confidence 347899999999999999 88899 5544333 35666777776
No 424
>KOG0331|consensus
Probab=87.99 E-value=0.83 Score=45.50 Aligned_cols=75 Identities=9% Similarity=0.104 Sum_probs=57.7
Q ss_pred ccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHH
Q psy7952 104 VRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHY 182 (444)
Q Consensus 104 ~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~ 182 (444)
...|+||+|-|+.-+ .+....+ ..+ +++..+||+.+..++...+.+.+ .+++.|+|+|--
T Consensus 340 ~~~KvIIFc~tkr~~-----~~l~~~l~~~~---~~a~~iHGd~sQ~eR~~~L~~Fr--eG~~~vLVATdV--------- 400 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTC-----DELARNLRRKG---WPAVAIHGDKSQSERDWVLKGFR--EGKSPVLVATDV--------- 400 (519)
T ss_pred CCCcEEEEecchhhH-----HHHHHHHHhcC---cceeeecccccHHHHHHHHHhcc--cCCcceEEEccc---------
Confidence 335789999999999 6666666 557 88999999999999998888865 588999999922
Q ss_pred HHHHHHhhCCccEEEE
Q psy7952 183 LLQHLVRYNKLAYIVV 198 (444)
Q Consensus 183 ~~~~~~~~~~~~~iVi 198 (444)
-.+-++..++++||-
T Consensus 401 -AaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 401 -AARGLDVPDVDLVIN 415 (519)
T ss_pred -ccccCCCccccEEEe
Confidence 234445667777773
No 425
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=87.96 E-value=0.64 Score=43.58 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=40.8
Q ss_pred CCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcc
Q psy7952 45 GFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYL 120 (444)
Q Consensus 45 g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~ 120 (444)
.|.. .++-|...+..+.+...++++++.||||||.. +.+... ... ...|++.+=-|.+|-++
T Consensus 154 ~~gt-~~~~~a~~L~~av~~r~NILisGGTGSGKTTl----------LNal~~-~i~--~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGT-MIRRAAKFLRRAVGIRCNILISGGTGSGKTTL----------LNALSG-FID--SDERVITIEDTAELQLA 215 (355)
T ss_pred HcCC-cCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH----------HHHHHh-cCC--CcccEEEEeehhhhccC
Confidence 3344 34689999998888856999999999999966 111000 111 12255777777777643
No 426
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=87.83 E-value=2.2 Score=41.78 Aligned_cols=91 Identities=13% Similarity=0.175 Sum_probs=48.2
Q ss_pred eCCCChhhHHHHHHHHHhcCCCeeEEEE-CCCccccccHHHHHHHHHhhCCccEEEEeccccccccCC--CcHHHHHHHH
Q psy7952 143 VSGQTKTENKAILEELRLVKPRIKLLYV-TPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH--DFRPTYRRLG 219 (444)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~Iiv~-Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~--~~~~~~~~l~ 219 (444)
+|.....++.........+.... |.|- ||+.=. .......+.......++++++|=.+.+...+. .....+..+.
T Consensus 258 tg~l~~~d~~~l~~a~~~l~~~~-i~IdD~~~~si-~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~~~~~r~qevs~iS 335 (435)
T COG0305 258 TGRLSDDEWERLIKAASELSEAP-IFIDDTPGLTI-TEIRSKARRLKLKHNLGLIVIDYLQLMTGGKKSENRKQEVSEIS 335 (435)
T ss_pred cccccHHHHHHHHHHHHHHhhCC-eeecCCCcCCH-HHHHHHHHHHHHhcCccEEEEEEEEeecccccchhHHHHHHHHH
Confidence 33445566665555555544444 5443 444322 11233344445556699999999999865442 1233334444
Q ss_pred HHHHhhCC--CCcEEEEe
Q psy7952 220 ELRQFTGN--SIPIIALT 235 (444)
Q Consensus 220 ~~~~~~~~--~~~~v~lS 235 (444)
+-++.+.+ +++++++|
T Consensus 336 r~LK~lAkEl~vpvialS 353 (435)
T COG0305 336 RSLKGLAKELGVPVIALS 353 (435)
T ss_pred HHHHHHHHhcCCcEEehh
Confidence 33333322 36777776
No 427
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=87.77 E-value=0.87 Score=44.04 Aligned_cols=17 Identities=12% Similarity=0.026 Sum_probs=15.8
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
.++++.++||+||++.|
T Consensus 102 ~~vLi~GetGtGKel~A 118 (403)
T COG1221 102 LPVLIIGETGTGKELFA 118 (403)
T ss_pred CcEEEecCCCccHHHHH
Confidence 89999999999999884
No 428
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=87.67 E-value=0.24 Score=44.28 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=14.9
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
..+++.+|+|+|||..+
T Consensus 20 s~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLA 36 (226)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEEeCCCCCcHHHH
Confidence 66899999999999773
No 429
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=87.53 E-value=0.99 Score=45.70 Aligned_cols=50 Identities=16% Similarity=0.101 Sum_probs=28.3
Q ss_pred CCccEEEEeccccccccCC-Cc----HHHHHHHHHHHHhhCCCCcEEEEeccCCc
Q psy7952 191 NKLAYIVVDEAHCVSEWGH-DF----RPTYRRLGELRQFTGNSIPIIALTATAEP 240 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~~v~lSAT~~~ 240 (444)
.....|++||++.+..... .. ......+...+........++.+-||=.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p 388 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRP 388 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCc
Confidence 4568999999999855321 11 23444444444434444456666666444
No 430
>KOG0741|consensus
Probab=87.51 E-value=3.5 Score=41.05 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=34.0
Q ss_pred CCccEEEEeccccccccC---CCcHHH-HHHHHHHHHhhCC-CCcEEEEeccCCcchHHHHHHHhcCCCC
Q psy7952 191 NKLAYIVVDEAHCVSEWG---HDFRPT-YRRLGELRQFTGN-SIPIIALTATAEPSVKQDIISVLKFNKP 255 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~---~~~~~~-~~~l~~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~l~~~~~ 255 (444)
+.+++||+|++.++.+|. ..|.+. ++.+.-+++..|+ ..+++.+..|- ...+.+.+++.+.
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS----~~~vL~~m~i~~~ 662 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTS----RREVLQEMGILDC 662 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEeccc----HHHHHHHcCHHHh
Confidence 468999999999998864 233332 3334444444443 34555555553 3344444444443
No 431
>KOG0729|consensus
Probab=87.25 E-value=2.4 Score=38.22 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCccccc
Q psy7952 65 THDIFVSMPTGAVSLVG 81 (444)
Q Consensus 65 ~~~~ii~apTGsGKT~~ 81 (444)
.+.+++.+|+|+|||++
T Consensus 211 pkgvllygppgtgktl~ 227 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLC 227 (435)
T ss_pred CCceEEeCCCCCchhHH
Confidence 47899999999999988
No 432
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=87.23 E-value=0.81 Score=47.68 Aligned_cols=56 Identities=7% Similarity=-0.021 Sum_probs=35.6
Q ss_pred HHHHHHHHHHccCC-cEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 53 LQKKAIRHILLRTH-DIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 53 ~Q~~~~~~~~~~~~-~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
-|.+.+..+++..+ -+++.|+-|=|||.++.+++. + +.......+++|..|+.+-+
T Consensus 218 ~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~------~----~~~~~~~~~iiVTAP~~~nv 274 (758)
T COG1444 218 EALEILERLLDAPKRALVLTADRGRGKSAALGIALA------A----AARLAGSVRIIVTAPTPANV 274 (758)
T ss_pred HHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH------H----HHHhcCCceEEEeCCCHHHH
Confidence 34445566666543 578999999999988554321 1 11222134678999999887
No 433
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=86.97 E-value=0.22 Score=44.95 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHcc----CCcEEEEccCCCcccccc
Q psy7952 57 AIRHILLR----THDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 57 ~~~~~~~~----~~~~ii~apTGsGKT~~a 82 (444)
-++.++.| ...+++.+|+|+|||..|
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la 38 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFS 38 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHH
Confidence 45555543 166899999999999873
No 434
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=86.92 E-value=1.6 Score=47.41 Aligned_cols=82 Identities=11% Similarity=0.163 Sum_probs=61.9
Q ss_pred ceeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 185 (444)
.+++|+||+.+-+ ....+.+....+..++..+||.++..++.....+.. .+..+|+|+|- ++.
T Consensus 661 ~qv~if~n~i~~~-----e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~--~Gk~~ILVaT~----------iie 723 (926)
T TIGR00580 661 GQVFYVHNRIESI-----EKLATQLRELVPEARIAIAHGQMTENELEEVMLEFY--KGEFQVLVCTT----------IIE 723 (926)
T ss_pred CeEEEEECCcHHH-----HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHH--cCCCCEEEECC----------hhh
Confidence 3579999998777 444455522122388999999999998888888776 47899999992 245
Q ss_pred HHHhhCCccEEEEeccccc
Q psy7952 186 HLVRYNKLAYIVVDEAHCV 204 (444)
Q Consensus 186 ~~~~~~~~~~iViDE~H~~ 204 (444)
.-.+..++++||++.++++
T Consensus 724 ~GIDIp~v~~VIi~~a~~~ 742 (926)
T TIGR00580 724 TGIDIPNANTIIIERADKF 742 (926)
T ss_pred cccccccCCEEEEecCCCC
Confidence 5667788999999999873
No 435
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=86.87 E-value=1.6 Score=41.47 Aligned_cols=22 Identities=5% Similarity=-0.023 Sum_probs=17.5
Q ss_pred HHHccCCcEEEEccCCCccccc
Q psy7952 60 HILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 60 ~~~~~~~~~ii~apTGsGKT~~ 81 (444)
.+...+.+++|.+++|+||+.+
T Consensus 17 ~~a~~~~pVLI~GE~GtGK~~l 38 (329)
T TIGR02974 17 RLAPLDRPVLIIGERGTGKELI 38 (329)
T ss_pred HHhCCCCCEEEECCCCChHHHH
Confidence 3334448899999999999977
No 436
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=86.83 E-value=0.31 Score=39.18 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 3 ~~~~l~G~~G~GKTtl 18 (148)
T smart00382 3 EVILIVGPPGSGKTTL 18 (148)
T ss_pred CEEEEECCCCCcHHHH
Confidence 6799999999999987
No 437
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.47 E-value=1.2 Score=48.13 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=13.2
Q ss_pred EEEEccCCCccccc
Q psy7952 68 IFVSMPTGAVSLVG 81 (444)
Q Consensus 68 ~ii~apTGsGKT~~ 81 (444)
+++.+|||+|||..
T Consensus 599 ~lf~Gp~GvGKT~l 612 (852)
T TIGR03345 599 FLLVGPSGVGKTET 612 (852)
T ss_pred EEEECCCCCCHHHH
Confidence 79999999999977
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=86.47 E-value=1.8 Score=38.84 Aligned_cols=16 Identities=6% Similarity=-0.097 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+++.+|+|+|||..
T Consensus 25 ~~~~i~G~~G~GKTtl 40 (230)
T PRK08533 25 SLILIEGDESTGKSIL 40 (230)
T ss_pred cEEEEECCCCCCHHHH
Confidence 6789999999999977
No 439
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.47 E-value=4.8 Score=42.43 Aligned_cols=55 Identities=20% Similarity=0.354 Sum_probs=38.0
Q ss_pred HHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCc
Q psy7952 181 HYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEP 240 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~ 240 (444)
..++.......+.=++|+|+.|.+.+.- .. ..+..+++..|.+..+++.|=+-++
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~~~~--l~---~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLISDPA--LH---EALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccCccc--HH---HHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3444444445555699999999987643 22 4566777788888888888877544
No 440
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=86.37 E-value=1 Score=38.65 Aligned_cols=16 Identities=13% Similarity=-0.145 Sum_probs=13.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-.++.+|..||||..
T Consensus 5 ~l~~i~gpM~SGKT~e 20 (201)
T COG1435 5 WLEFIYGPMFSGKTEE 20 (201)
T ss_pred EEEEEEccCcCcchHH
Confidence 3468999999999987
No 441
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=86.35 E-value=1.6 Score=43.76 Aligned_cols=74 Identities=9% Similarity=0.095 Sum_probs=56.4
Q ss_pred cceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHH
Q psy7952 105 RSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYL 183 (444)
Q Consensus 105 ~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~ 183 (444)
..++||+|+++.-+ ....+.+ ..+ +.+..++++.+..++...+..++ .+..+|+|+|. .
T Consensus 245 ~~~~lVF~~t~~~~-----~~l~~~L~~~g---~~~~~lhg~~~~~~R~~~l~~F~--~g~~~iLVaTd----------v 304 (456)
T PRK10590 245 WQQVLVFTRTKHGA-----NHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFK--SGDIRVLVATD----------I 304 (456)
T ss_pred CCcEEEEcCcHHHH-----HHHHHHHHHCC---CCEEEEECCCCHHHHHHHHHHHH--cCCCcEEEEcc----------H
Confidence 35789999999988 6666666 667 88999999999999988888776 47889999992 2
Q ss_pred HHHHHhhCCccEEEE
Q psy7952 184 LQHLVRYNKLAYIVV 198 (444)
Q Consensus 184 ~~~~~~~~~~~~iVi 198 (444)
...-.++.++++||.
T Consensus 305 ~~rGiDip~v~~VI~ 319 (456)
T PRK10590 305 AARGLDIEELPHVVN 319 (456)
T ss_pred HhcCCCcccCCEEEE
Confidence 334445667777763
No 442
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=86.34 E-value=2.9 Score=42.92 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccccc
Q psy7952 66 HDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~ 83 (444)
+-+++.||.|+|||.+|-
T Consensus 39 hayLf~Gp~G~GKTt~Ar 56 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSAR 56 (563)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347999999999998843
No 443
>KOG0344|consensus
Probab=86.21 E-value=3.6 Score=41.22 Aligned_cols=87 Identities=10% Similarity=0.128 Sum_probs=66.4
Q ss_pred cccCCccceeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccc
Q psy7952 99 ILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTE 178 (444)
Q Consensus 99 l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~ 178 (444)
+...+..|.++|.+-+.+-+ .+.+..+. -.+.+++.+++|..+...+.+.....+ .+...++|||
T Consensus 381 ~v~~g~~PP~lIfVQs~eRa-----k~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~FR--~g~IwvLicT------- 445 (593)
T KOG0344|consen 381 LVASGFKPPVLIFVQSKERA-----KQLFEELE-IYDNINVDVIHGERSQKQRDETMERFR--IGKIWVLICT------- 445 (593)
T ss_pred HHhccCCCCeEEEEecHHHH-----HHHHHHhh-hccCcceeeEecccchhHHHHHHHHHh--ccCeeEEEeh-------
Confidence 55666777889999998888 66666662 223399999999998888888777776 4788999999
Q ss_pred cHHHHHHHHHhhCCccEEEEecccc
Q psy7952 179 SFHYLLQHLVRYNKLAYIVVDEAHC 203 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~iViDE~H~ 203 (444)
. ++.+-.++..+++||.+++-.
T Consensus 446 --d-ll~RGiDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 446 --D-LLARGIDFKGVNLVINYDFPQ 467 (593)
T ss_pred --h-hhhccccccCcceEEecCCCc
Confidence 3 344557889999999977754
No 444
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.12 E-value=2.3 Score=43.85 Aligned_cols=76 Identities=9% Similarity=0.206 Sum_probs=59.1
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++..+ ....+.+ ..+ +.+..++++....++...++.++ .+..+|+|+|. ..
T Consensus 258 ~k~LVF~nt~~~a-----e~l~~~L~~~g---~~v~~lhg~l~~~eR~~il~~Fr--~G~~~VLVaTd----------v~ 317 (572)
T PRK04537 258 ARTMVFVNTKAFV-----ERVARTLERHG---YRVGVLSGDVPQKKRESLLNRFQ--KGQLEILVATD----------VA 317 (572)
T ss_pred CcEEEEeCCHHHH-----HHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHH--cCCCeEEEEeh----------hh
Confidence 4679999999999 5666666 667 88999999999999988888876 47899999992 23
Q ss_pred HHHHhhCCccEEEEecc
Q psy7952 185 QHLVRYNKLAYIVVDEA 201 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE~ 201 (444)
..-.++.++++||.-++
T Consensus 318 arGIDip~V~~VInyd~ 334 (572)
T PRK04537 318 ARGLHIDGVKYVYNYDL 334 (572)
T ss_pred hcCCCccCCCEEEEcCC
Confidence 34456778888886544
No 445
>KOG0333|consensus
Probab=86.09 E-value=1.3 Score=43.74 Aligned_cols=75 Identities=12% Similarity=0.185 Sum_probs=58.5
Q ss_pred CccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHH
Q psy7952 103 NVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFH 181 (444)
Q Consensus 103 ~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~ 181 (444)
+..+.++|+++++.-+ ....+.| ..+ +++..+||+.+...+...+.+++ .+..+|+|+|.--
T Consensus 515 ~~~ppiIIFvN~kk~~-----d~lAk~LeK~g---~~~~tlHg~k~qeQRe~aL~~fr--~~t~dIlVaTDvA------- 577 (673)
T KOG0333|consen 515 NFDPPIIIFVNTKKGA-----DALAKILEKAG---YKVTTLHGGKSQEQRENALADFR--EGTGDILVATDVA------- 577 (673)
T ss_pred CCCCCEEEEEechhhH-----HHHHHHHhhcc---ceEEEeeCCccHHHHHHHHHHHH--hcCCCEEEEeccc-------
Confidence 3457889999999988 6666777 778 99999999999999999998887 3678999999322
Q ss_pred HHHHHHHhhCCccEEE
Q psy7952 182 YLLQHLVRYNKLAYIV 197 (444)
Q Consensus 182 ~~~~~~~~~~~~~~iV 197 (444)
-.-.+..++++||
T Consensus 578 ---gRGIDIpnVSlVi 590 (673)
T KOG0333|consen 578 ---GRGIDIPNVSLVI 590 (673)
T ss_pred ---ccCCCCCccceee
Confidence 2334556676666
No 446
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.00 E-value=0.82 Score=41.99 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHccC-CcEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILLRT-HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~-~~~ii~apTGsGKT~~ 81 (444)
+.|.+.+..++... ..+++.+|||+|||..
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 46777887777532 4689999999999977
No 447
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.79 E-value=0.49 Score=43.64 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+...+.+....++..++++.||||||||..
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~ 143 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTL 143 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHH
T ss_pred HHHHHHHhhccccceEEEEECCCccccchH
Confidence 344555555544447999999999999977
No 448
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.73 E-value=2.2 Score=42.24 Aligned_cols=75 Identities=11% Similarity=0.132 Sum_probs=58.2
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ......+ ..+ +++..++|+....++...+++++ .+..+|+|+|. ..
T Consensus 256 ~~~lVF~~t~~~~-----~~l~~~L~~~g---~~v~~lhg~~~~~~R~~~l~~F~--~g~~~vLVaTd----------v~ 315 (423)
T PRK04837 256 DRAIIFANTKHRC-----EEIWGHLAADG---HRVGLLTGDVAQKKRLRILEEFT--RGDLDILVATD----------VA 315 (423)
T ss_pred CeEEEEECCHHHH-----HHHHHHHHhCC---CcEEEecCCCChhHHHHHHHHHH--cCCCcEEEEec----------hh
Confidence 4679999999998 6666666 667 89999999999988888888776 57899999992 23
Q ss_pred HHHHhhCCccEEEEec
Q psy7952 185 QHLVRYNKLAYIVVDE 200 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE 200 (444)
..-.++.++++||.-+
T Consensus 316 ~rGiDip~v~~VI~~d 331 (423)
T PRK04837 316 ARGLHIPAVTHVFNYD 331 (423)
T ss_pred hcCCCccccCEEEEeC
Confidence 3445666788777544
No 449
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=85.55 E-value=0.6 Score=48.58 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=30.6
Q ss_pred cCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 64 RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 64 ~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
+++++++.||||+|||.. +.+|. +..-..+ +||.=|.-++.
T Consensus 143 g~~hvLviApTrSGKgvg--------~VIPn----LL~~~~S--~VV~D~KGEl~ 183 (663)
T PRK13876 143 GPEHVLCFAPTRSGKGVG--------LVVPT----LLTWPGS--AIVHDIKGENW 183 (663)
T ss_pred CCceEEEEecCCCCccee--------Eehhh----HHhCCCC--EEEEeCcchHH
Confidence 457999999999999999 88898 5443333 25555777776
No 450
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=85.54 E-value=3.1 Score=33.82 Aligned_cols=23 Identities=4% Similarity=0.089 Sum_probs=17.3
Q ss_pred HHHHccCCcEEEEccCCCccccc
Q psy7952 59 RHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 59 ~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
..+...+.++++.+++|+||+.+
T Consensus 15 ~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 15 ERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHhCCCCcEEEEcCCCCCHHHH
Confidence 33444448999999999999987
No 451
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=85.39 E-value=4.1 Score=36.75 Aligned_cols=20 Identities=20% Similarity=-0.006 Sum_probs=15.9
Q ss_pred cEEEEccCCCcccccccccc
Q psy7952 67 DIFVSMPTGAVSLVGSVVSA 86 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~~~~ 86 (444)
-.++.+|.|+|||..++..+
T Consensus 3 ~~ll~g~~G~GKS~lal~la 22 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLA 22 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHH
Confidence 35899999999998865544
No 452
>PRK12608 transcription termination factor Rho; Provisional
Probab=85.20 E-value=3.7 Score=39.42 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=22.0
Q ss_pred HHHHHHHHHH---ccCCcEEEEccCCCccccc
Q psy7952 53 LQKKAIRHIL---LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~~~~---~~~~~~ii~apTGsGKT~~ 81 (444)
.-.++++.+. .| ++.+|.+|.|+|||..
T Consensus 119 ~~~RvID~l~PiGkG-QR~LIvG~pGtGKTTL 149 (380)
T PRK12608 119 LSMRVVDLVAPIGKG-QRGLIVAPPRAGKTVL 149 (380)
T ss_pred hhHhhhhheeecCCC-ceEEEECCCCCCHHHH
Confidence 4445666555 56 8999999999999977
No 453
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=85.16 E-value=4.5 Score=34.35 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=31.3
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcch
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSV 242 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~ 242 (444)
-..+++||+||+-...+.+ +-+. ..+..+++..|...-+|+..-.+++..
T Consensus 95 ~~~~DlvVLDEi~~A~~~g--li~~-~~v~~lL~~rp~~~evVlTGR~~p~~l 144 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYG--YLDV-EEVVEALQERPGHQHVIITGRGCPQDL 144 (173)
T ss_pred cCCCCEEEehhhHHHHHCC--CcCH-HHHHHHHHhCCCCCEEEEECCCCCHHH
Confidence 4679999999998777665 2222 345566666666555555444444433
No 454
>PRK06749 replicative DNA helicase; Provisional
Probab=85.15 E-value=2.6 Score=41.63 Aligned_cols=33 Identities=0% Similarity=-0.053 Sum_probs=21.5
Q ss_pred ccCchHHHHHHHHHHccC---CcEEEEccCCCcccccc
Q psy7952 48 SFKCELQKKAIRHILLRT---HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~~~~---~~~ii~apTGsGKT~~a 82 (444)
.+||.+. .++.+..|- .-++|.|.||.|||..|
T Consensus 168 Gi~TG~~--~LD~~t~Gl~~G~LiiIaarPgmGKTafa 203 (428)
T PRK06749 168 GIETGYT--SLNKMTCGLQEGDFVVLGARPSMGKTAFA 203 (428)
T ss_pred CccCCcH--HHHHHhCCCCCCcEEEEEeCCCCCchHHH
Confidence 3555543 455554431 55789999999999763
No 455
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=84.98 E-value=0.29 Score=45.50 Aligned_cols=17 Identities=6% Similarity=-0.076 Sum_probs=15.0
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
.++++.+|+|+|||.+|
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47999999999999874
No 456
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=84.90 E-value=2.6 Score=40.46 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.4
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
+.+++.||+|+|||..|
T Consensus 37 ~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA 53 (355)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35799999999999773
No 457
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=84.89 E-value=0.63 Score=43.86 Aligned_cols=27 Identities=11% Similarity=-0.050 Sum_probs=20.2
Q ss_pred HHHHHHc-cC----CcEEEEccCCCccccccc
Q psy7952 57 AIRHILL-RT----HDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 57 ~~~~~~~-~~----~~~ii~apTGsGKT~~a~ 83 (444)
.++.++. |. +-+.+.+|+|+|||..|+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal 73 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLAL 73 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 5667776 31 457899999999997743
No 458
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=84.83 E-value=3.2 Score=37.41 Aligned_cols=105 Identities=14% Similarity=0.241 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhhcCHHHHHHHHHHHhcC----CccEEEEcCccccccc
Q psy7952 280 DSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKHERSRVQESFMRG----EINVITATISFGMGID 355 (444)
Q Consensus 280 ~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~r~~~~~~f~~g----~~~vLvaT~~~~~Gid 355 (444)
.+++.+...+...+.. +--|+.+||....+. | .+.++ ...|+|+=+.++||+.
T Consensus 94 ~s~~ei~~~l~~~~~~-----~~~v~~vNS~~~~~~----l--------------dy~~~~~~~~~~I~VGGn~LsRGlT 150 (239)
T PF10593_consen 94 PSWEEIKPELPKAISD-----GIEVVVVNSGSSDDS----L--------------DYDDGENLGLNVIAVGGNKLSRGLT 150 (239)
T ss_pred cCHHHHHHHHHHHHhc-----CceEEEEeCCCcccc----c--------------cccccccCCceEEEECCccccCcee
Confidence 4455666666665542 233777776543332 1 12222 3788999999999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHhccCC-CCCCceeEEEEecccchhhHHHHHh
Q psy7952 356 RQNVRFVVHWGMPSSIPAYYQESGRAG-RDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 356 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~-R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
++++.+-.+...+...++++||.-=.| |.|-.+.|-++.+++-...+..+..
T Consensus 151 leGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 151 LEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDLCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred ECCcEEEEecCCCchHHHHHHHhhcccCCcccccceEEecCHHHHHHHHHHHH
Confidence 999999999999998999988864455 7888899999999888888777764
No 459
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.78 E-value=2.1 Score=46.23 Aligned_cols=104 Identities=16% Similarity=0.060 Sum_probs=0.0
Q ss_pred EEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCC
Q psy7952 68 IFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSG 145 (444)
Q Consensus 68 ~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~ 145 (444)
+++++|||+|||.. ...+... ... .....+...
T Consensus 542 ~lf~Gp~GvGKt~l------------------------------------------A~~LA~~l~~~~---~~~~~~d~s 576 (821)
T CHL00095 542 FLFSGPTGVGKTEL------------------------------------------TKALASYFFGSE---DAMIRLDMS 576 (821)
T ss_pred EEEECCCCCcHHHH------------------------------------------HHHHHHHhcCCc---cceEEEEch
Q ss_pred CChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHh-
Q psy7952 146 QTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQF- 224 (444)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~- 224 (444)
.-.. .....-++++|..-....-...+......+..++|++||+|.+ -......+..++..
T Consensus 577 ~~~~------------~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka------~~~v~~~Llq~le~g 638 (821)
T CHL00095 577 EYME------------KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA------HPDIFNLLLQILDDG 638 (821)
T ss_pred hccc------------cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC------CHHHHHHHHHHhccC
Q ss_pred -----------hCCCCcEEEEe
Q psy7952 225 -----------TGNSIPIIALT 235 (444)
Q Consensus 225 -----------~~~~~~~v~lS 235 (444)
+.+ +-+|+.|
T Consensus 639 ~~~d~~g~~v~~~~-~i~I~Ts 659 (821)
T CHL00095 639 RLTDSKGRTIDFKN-TLIIMTS 659 (821)
T ss_pred ceecCCCcEEecCc-eEEEEeC
No 460
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=84.75 E-value=2.8 Score=38.88 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=30.2
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCC
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAE 239 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~ 239 (444)
+..+++|||++|.|.... ...+.+.+..-+++..++++|..+.
T Consensus 94 ~~~kv~ii~~ad~mt~~A------aNaLLK~LEEPp~~~~fiL~~~~~~ 136 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDA------ISAFLKVLEDPPQHGVIILTSAKPQ 136 (290)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHhhcCCCCeEEEEEeCChh
Confidence 467899999999986422 3566667777676677777776643
No 461
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=84.74 E-value=1 Score=41.75 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++++|||+|||.+
T Consensus 195 ~vi~~vGptGvGKTTt 210 (282)
T TIGR03499 195 GVIALVGPTGVGKTTT 210 (282)
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999977
No 462
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=84.71 E-value=6.6 Score=39.98 Aligned_cols=166 Identities=13% Similarity=0.090 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
...+.+.++..||...+. ..+++...+ +--+.-.|---|||.. .+|+ +..+...-..=++.+++
T Consensus 176 a~r~~~~lk~~Fdi~~~s----~~~l~~FKQ--kaTVFLVPRRHGKTWf---------~Vpi-IsllL~s~~gI~IGYvA 239 (668)
T PHA03372 176 ANRVLEYLLHVFDIEFLS----ESSLNIFKQ--KATVFLVPRRHGKTWF---------IIPI-ISFLLKNIIGISIGYVA 239 (668)
T ss_pred HHHHHHHHHHHcCCcccC----HHHHHHhhc--cceEEEecccCCceeh---------HHHH-HHHHHHhhcCceEEEEe
Confidence 566778889998988633 345666555 3455667899999965 2333 33333322223567888
Q ss_pred chhhhhcccCccchHhhh----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHH-HHHHH
Q psy7952 113 PILSSFYLRFRDDKTSIV----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHY-LLQHL 187 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~-~~~~~ 187 (444)
.-+..+ +-.+++. +.-++.-.+... .+..|.+.-|+.=....|.. ...+.
T Consensus 240 HqKhvs-----~~Vf~EI~~~lrrwF~~~~vi~~--------------------k~~tI~~s~pg~Kst~~fasc~n~Ns 294 (668)
T PHA03372 240 HQKHVS-----QFVLKEVEFRCRRMFPRKHTIEN--------------------KDNVISIDHRGAKSTALFASCYNTNS 294 (668)
T ss_pred eHHHHH-----HHHHHHHHHHHhhhcCccceeee--------------------cCcEEEEecCCCcceeeehhhccCcc
Confidence 877665 3333332 111110111100 11234444443211111111 11122
Q ss_pred HhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHH
Q psy7952 188 VRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDII 247 (444)
Q Consensus 188 ~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~ 247 (444)
..-.+++++++||+|-+.. ..+..|.-++ ..+++++|..|.|-.......+.
T Consensus 295 iRGQ~fnll~VDEA~FI~~------~a~~tilgfm--~q~~~KiIfISS~Nsg~~sTSfL 346 (668)
T PHA03372 295 IRGQNFHLLLVDEAHFIKK------DAFNTILGFL--AQNTTKIIFISSTNTTNDATCFL 346 (668)
T ss_pred ccCCCCCEEEEehhhccCH------HHHHHhhhhh--cccCceEEEEeCCCCCCccchHH
Confidence 2334789999999998643 1223333222 23458899999886555444333
No 463
>KOG0730|consensus
Probab=84.56 E-value=2.4 Score=43.19 Aligned_cols=27 Identities=7% Similarity=0.062 Sum_probs=19.2
Q ss_pred HHHHHHHH-ccCCcEEEEccCCCccccc
Q psy7952 55 KKAIRHIL-LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 55 ~~~~~~~~-~~~~~~ii~apTGsGKT~~ 81 (444)
-+.+..+- +-.+.|++.+|+|+|||..
T Consensus 457 pe~F~r~Gi~ppkGVLlyGPPGC~KT~l 484 (693)
T KOG0730|consen 457 PEKFARFGISPPKGVLLYGPPGCGKTLL 484 (693)
T ss_pred hHHHHHhcCCCCceEEEECCCCcchHHH
Confidence 33444433 2237899999999999977
No 464
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=84.49 E-value=1.9 Score=43.74 Aligned_cols=72 Identities=8% Similarity=0.152 Sum_probs=57.9
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|.|+..+ ......+ ..+ +++..+||+.+...+...+...+ .+..+|+|+|- +.
T Consensus 274 ~~~IVF~~tk~~~-----~~l~~~l~~~g---~~~~~lhG~l~q~~R~~~l~~F~--~g~~~vLVaTD----------va 333 (513)
T COG0513 274 GRVIVFVRTKRLV-----EELAESLRKRG---FKVAALHGDLPQEERDRALEKFK--DGELRVLVATD----------VA 333 (513)
T ss_pred CeEEEEeCcHHHH-----HHHHHHHHHCC---CeEEEecCCCCHHHHHHHHHHHH--cCCCCEEEEec----------hh
Confidence 3589999999999 6666666 788 99999999999999999998887 58899999992 22
Q ss_pred HHHHhhCCccEEE
Q psy7952 185 QHLVRYNKLAYIV 197 (444)
Q Consensus 185 ~~~~~~~~~~~iV 197 (444)
.+-.+..++++||
T Consensus 334 aRGiDi~~v~~Vi 346 (513)
T COG0513 334 ARGLDIPDVSHVI 346 (513)
T ss_pred hccCCccccceeE
Confidence 3445566677775
No 465
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=84.46 E-value=1.5 Score=43.04 Aligned_cols=41 Identities=2% Similarity=-0.107 Sum_probs=24.4
Q ss_pred cEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhh
Q psy7952 67 DIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILS 116 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~ 116 (444)
-.++.+..|||||.++.+. . +..+.......+++++-|+..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~--------~-~~~~~~~~~~~~~~~~r~~~~ 43 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALK--------L-VEKLAINKKQQNILAARKVQN 43 (396)
T ss_pred eEEEeCCCCcccHHHHHHH--------H-HHHHHhcCCCcEEEEEehhhh
Confidence 4678999999999883322 2 111222112245677878776
No 466
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=84.41 E-value=2.4 Score=38.54 Aligned_cols=21 Identities=14% Similarity=-0.072 Sum_probs=17.5
Q ss_pred HHHccCCcEEEEccCCCccccc
Q psy7952 60 HILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 60 ~~~~~~~~~ii~apTGsGKT~~ 81 (444)
.+-.| +.+++.+|.|+|||..
T Consensus 12 ~i~~G-qr~~I~G~~G~GKTTL 32 (249)
T cd01128 12 PIGKG-QRGLIVAPPKAGKTTL 32 (249)
T ss_pred ccCCC-CEEEEECCCCCCHHHH
Confidence 34467 8999999999999965
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.33 E-value=0.57 Score=47.18 Aligned_cols=28 Identities=11% Similarity=-0.044 Sum_probs=20.9
Q ss_pred HHHHHHHccC----CcEEEEccCCCccccccc
Q psy7952 56 KAIRHILLRT----HDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 56 ~~~~~~~~~~----~~~ii~apTGsGKT~~a~ 83 (444)
.-++.++.|. .-+++.+|+|+|||..++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~ 281 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVS 281 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHH
Confidence 4566767542 558999999999998743
No 468
>PRK10436 hypothetical protein; Provisional
Probab=84.33 E-value=0.9 Score=45.20 Aligned_cols=30 Identities=30% Similarity=0.290 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHccC-CcEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILLRT-HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~-~~~ii~apTGsGKT~~ 81 (444)
+.|.+.+..+.... .-+++++|||||||.+
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHH
Confidence 46777887776532 4689999999999987
No 469
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=84.31 E-value=0.79 Score=47.36 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=31.5
Q ss_pred cCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 64 RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 64 ~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
|+.++++.||||+|||.. +.+|. +...+.. ++++=|.-++.
T Consensus 210 g~~H~lv~ApTgsGKgvg--------~VIPn----LL~~~gS--~VV~DpKgE~~ 250 (623)
T TIGR02767 210 GSTHMIFFAGSGGFKTTS--------VVVPT----ALKYGGP--LVCLDPSTEVA 250 (623)
T ss_pred CCceEEEEeCCCCCccce--------eehhh----hhcCCCC--EEEEEChHHHH
Confidence 347899999999999999 88998 5554433 26666888887
No 470
>PTZ00110 helicase; Provisional
Probab=84.12 E-value=2.8 Score=43.03 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=57.2
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+....++...+..++ .+...|+|+|. ..
T Consensus 378 ~k~LIF~~t~~~a-----~~l~~~L~~~g---~~~~~ihg~~~~~eR~~il~~F~--~G~~~ILVaTd----------v~ 437 (545)
T PTZ00110 378 DKILIFVETKKGA-----DFLTKELRLDG---WPALCIHGDKKQEERTWVLNEFK--TGKSPIMIATD----------VA 437 (545)
T ss_pred CeEEEEecChHHH-----HHHHHHHHHcC---CcEEEEECCCcHHHHHHHHHHHh--cCCCcEEEEcc----------hh
Confidence 4779999999998 5666666 566 78899999999999988888876 47788999992 13
Q ss_pred HHHHhhCCccEEEEe
Q psy7952 185 QHLVRYNKLAYIVVD 199 (444)
Q Consensus 185 ~~~~~~~~~~~iViD 199 (444)
..-.+..++++||.-
T Consensus 438 ~rGIDi~~v~~VI~~ 452 (545)
T PTZ00110 438 SRGLDVKDVKYVINF 452 (545)
T ss_pred hcCCCcccCCEEEEe
Confidence 344566778888753
No 471
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=84.08 E-value=3.6 Score=44.87 Aligned_cols=66 Identities=6% Similarity=0.215 Sum_probs=59.2
Q ss_pred CCceEEEEecccchHHHHHHHHHhh--------------cCHHHHHHHHHHHhcCCccEEEEcCc-cccccccCCccEEE
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK--------------VNKHERSRVQESFMRGEINVITATIS-FGMGIDRQNVRFVV 363 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~--------------~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gidi~~~~~Vi 363 (444)
.++++.|.++|---|++-++-++.+ .+..+...+++..++|+++|+|+|.- ++.+|-+.++..+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 5799999999999999999999888 67899999999999999999999965 67888888888887
Q ss_pred E
Q psy7952 364 H 364 (444)
Q Consensus 364 ~ 364 (444)
.
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 3
No 472
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.96 E-value=1.1 Score=45.17 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHccCC-cEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILLRTH-DIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~-~~ii~apTGsGKT~~ 81 (444)
+-|.+.+..+....+ -+++.+|||||||..
T Consensus 228 ~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 228 PELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 468888888776534 478999999999977
No 473
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=83.86 E-value=1 Score=42.96 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+.+.+.+..+.....++++.++||+|||..
T Consensus 165 ~~~~~~L~~~v~~~~~ili~G~tGsGKTTl 194 (340)
T TIGR03819 165 PGVARLLRAIVAARLAFLISGGTGSGKTTL 194 (340)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 678888888887768999999999999965
No 474
>KOG0298|consensus
Probab=83.71 E-value=2 Score=46.91 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=65.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHhh-------cCHHHHHHHHHHHhcCCccE-EEEcCccccccccCCccEEEEeCCCC
Q psy7952 298 KANNCGIIYCRTREHTTDLADALRRK-------VNKHERSRVQESFMRGEINV-ITATISFGMGIDRQNVRFVVHWGMPS 369 (444)
Q Consensus 298 ~~~~~~iVf~~s~~~~~~l~~~L~~~-------~~~~~r~~~~~~f~~g~~~v-LvaT~~~~~Gidi~~~~~Vi~~~~p~ 369 (444)
+...++|||..-.....-+...+... ...++....+..|++ +.+ ++-++..+.|+|+-+..||+..++-.
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePiL 1296 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPIL 1296 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCcchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecccc
Confidence 35678999987554433333333222 223445566666665 554 67788899999999999999999999
Q ss_pred CHHHHHHHhccCCCCCCce
Q psy7952 370 SIPAYYQESGRAGRDGLQS 388 (444)
Q Consensus 370 s~~~~~Qr~GR~~R~g~~g 388 (444)
+...-.|.+||+.|.|+.-
T Consensus 1297 N~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1297 NPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred CchHHHhhhhhhhhccccc
Confidence 9999999999999999864
No 475
>KOG2228|consensus
Probab=83.71 E-value=6.7 Score=36.85 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+++++.+|-|+|||..
T Consensus 50 nsviiigprgsgkT~l 65 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTIL 65 (408)
T ss_pred CceEEEccCCCCceEe
Confidence 7899999999999954
No 476
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=83.46 E-value=4.1 Score=38.86 Aligned_cols=56 Identities=9% Similarity=-0.097 Sum_probs=31.6
Q ss_pred HHHHHHccC----CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 57 AIRHILLRT----HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 57 ~~~~~~~~~----~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
.++.++.|. .-..|.+|+|+|||..++..+.. .++|. ..++...+++|+......-
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~-~qlp~-----~~gg~~~~vvyIdTE~tF~ 173 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVT-TQLPT-----EMGGGNGKVAYIDTEGTFR 173 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHH-Hhcch-----hhCCCCceEEEEEcCCCCC
Confidence 456666642 34679999999999875433221 11221 1233334668887655433
No 477
>PHA00350 putative assembly protein
Probab=83.38 E-value=6 Score=38.44 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=13.4
Q ss_pred EEEEccCCCccccccc
Q psy7952 68 IFVSMPTGAVSLVGSV 83 (444)
Q Consensus 68 ~ii~apTGsGKT~~a~ 83 (444)
.++.+.+|+|||+.|+
T Consensus 4 ~l~tG~pGSGKT~~aV 19 (399)
T PHA00350 4 YAIVGRPGSYKSYEAV 19 (399)
T ss_pred EEEecCCCCchhHHHH
Confidence 5789999999998843
No 478
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.28 E-value=3 Score=42.52 Aligned_cols=52 Identities=29% Similarity=0.318 Sum_probs=31.5
Q ss_pred ccEEEEeccccccc-c------CCCcH-HHHHHHHHHHHhhCCCCcEEEEeccCCcchHH
Q psy7952 193 LAYIVVDEAHCVSE-W------GHDFR-PTYRRLGELRQFTGNSIPIIALTATAEPSVKQ 244 (444)
Q Consensus 193 ~~~iViDE~H~~~~-~------~~~~~-~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~ 244 (444)
...|+|||++.... . |++.+ ..+..+.--...+..+..++.+.||..+.+.+
T Consensus 243 P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 243 PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 36899999999843 1 22212 12233333333445556899999998776654
No 479
>KOG0736|consensus
Probab=83.12 E-value=1.5 Score=45.38 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=31.2
Q ss_pred CccEEEEeccccccc-------cCCCcHHHHHHHHHHHHhhC--CCCcEEEEeccCCcchH
Q psy7952 192 KLAYIVVDEAHCVSE-------WGHDFRPTYRRLGELRQFTG--NSIPIIALTATAEPSVK 243 (444)
Q Consensus 192 ~~~~iViDE~H~~~~-------~~~~~~~~~~~l~~~~~~~~--~~~~~v~lSAT~~~~~~ 243 (444)
....|++||.|-+-- .|.-+...+..+..-+..+. ....+..+.||-.|...
T Consensus 764 ~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLL 824 (953)
T KOG0736|consen 764 APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLL 824 (953)
T ss_pred CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcccc
Confidence 567899999998821 22233444444444444443 34568888899666543
No 480
>PRK09354 recA recombinase A; Provisional
Probab=82.91 E-value=1.1 Score=42.74 Aligned_cols=27 Identities=11% Similarity=-0.045 Sum_probs=20.3
Q ss_pred HHHHHHc-cC----CcEEEEccCCCccccccc
Q psy7952 57 AIRHILL-RT----HDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 57 ~~~~~~~-~~----~~~ii~apTGsGKT~~a~ 83 (444)
.++.++. |. +-+.|.+|+|+|||..|+
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal 78 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLAL 78 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHH
Confidence 5667776 42 457899999999998743
No 481
>PTZ00293 thymidine kinase; Provisional
Probab=82.90 E-value=3 Score=36.62 Aligned_cols=16 Identities=6% Similarity=-0.213 Sum_probs=13.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.--++.+|.++|||.-
T Consensus 5 ~i~vi~GpMfSGKTte 20 (211)
T PTZ00293 5 TISVIIGPMFSGKTTE 20 (211)
T ss_pred EEEEEECCCCChHHHH
Confidence 4468899999999975
No 482
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.86 E-value=0.6 Score=38.01 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=13.7
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
++++.+|+|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 589999999999977
No 483
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=82.72 E-value=8.2 Score=37.61 Aligned_cols=125 Identities=12% Similarity=0.094 Sum_probs=74.7
Q ss_pred eEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHH---HHHHHhcCCCeeEEEECCCccccccHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAI---LEELRLVKPRIKLLYVTPERAVTESFHYL 183 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~ 183 (444)
-+|+.|+..++ ......+ ...+...+...+.|+.+....+-. .........+..++..|.+.+.+.....+
T Consensus 88 nFv~g~~N~~A-----~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~ 162 (408)
T COG0593 88 NFVVGPSNRLA-----YAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKAL 162 (408)
T ss_pred heeeCCchHHH-----HHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHH
Confidence 38889999888 6777777 322224678888888877665422 22333345667899999888764333332
Q ss_pred HHH----HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCC-CcEEEEeccCCcc
Q psy7952 184 LQH----LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNS-IPIIALTATAEPS 241 (444)
Q Consensus 184 ~~~----~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~v~lSAT~~~~ 241 (444)
..+ +....++++++||.++.+...... ...+.+.++.+..+ .|+|+.|-.+|..
T Consensus 163 ~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~~----qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 163 RDNEMEKFKEKYSLDLLLIDDIQFLAGKERT----QEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred HhhhHHHHHHhhccCeeeechHhHhcCChhH----HHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 221 111127999999999998654321 23444444444332 4566666555543
No 484
>COG4128 Zot Zonula occludens toxin [General function prediction only]
Probab=82.59 E-value=1.6 Score=39.83 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=16.1
Q ss_pred EEEccCCCcccccccccccceEEeCC
Q psy7952 69 FVSMPTGAVSLVGSVVSARSRVRIPP 94 (444)
Q Consensus 69 ii~apTGsGKT~~a~~~~~~~~~~~~ 94 (444)
+-++++||+||..|++- -++|+
T Consensus 5 ihhG~pGSyKTsgAv~~----~~iPA 26 (398)
T COG4128 5 IHHGIPGSYKTSGAVCN----VIIPA 26 (398)
T ss_pred EEecCCCCcccchhHHh----hhhhh
Confidence 56899999999886543 34565
No 485
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=82.40 E-value=2.6 Score=39.76 Aligned_cols=27 Identities=11% Similarity=-0.047 Sum_probs=19.5
Q ss_pred HHHHHHc-cC----CcEEEEccCCCccccccc
Q psy7952 57 AIRHILL-RT----HDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 57 ~~~~~~~-~~----~~~ii~apTGsGKT~~a~ 83 (444)
.++.++. |. .-+.|.+|+|+|||..|+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL 73 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLAL 73 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHH
Confidence 4566665 31 457899999999997743
No 486
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=82.19 E-value=5.1 Score=41.40 Aligned_cols=51 Identities=8% Similarity=-0.007 Sum_probs=28.3
Q ss_pred HHhcCCCeeEEEECCCccccccHHHHH-HHHHhhCCccEEEEeccccccccC
Q psy7952 158 LRLVKPRIKLLYVTPERAVTESFHYLL-QHLVRYNKLAYIVVDEAHCVSEWG 208 (444)
Q Consensus 158 ~~~~~~~~~Iiv~Tpe~l~~~~~~~~~-~~~~~~~~~~~iViDE~H~~~~~~ 208 (444)
+..++++++-.|+--+.-.+..-...+ -.....++-.++|+||+..-.|..
T Consensus 448 I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~ 499 (567)
T COG1132 448 IANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTE 499 (567)
T ss_pred HHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHH
Confidence 334456788888843332222211111 122234566999999999877643
No 487
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=82.00 E-value=1.6 Score=38.85 Aligned_cols=17 Identities=29% Similarity=0.053 Sum_probs=14.5
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
.-+++.+++|+|||..|
T Consensus 17 ~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFS 33 (224)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999763
No 488
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.00 E-value=0.65 Score=42.64 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=13.6
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-++|.+|||||||.+
T Consensus 127 LILVTGpTGSGKSTT 141 (353)
T COG2805 127 LILVTGPTGSGKSTT 141 (353)
T ss_pred eEEEeCCCCCcHHHH
Confidence 489999999999977
No 489
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=81.88 E-value=17 Score=31.38 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=30.2
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcc
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPS 241 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~ 241 (444)
-..+++||+||+-...+.| +-+. ..+..+++..|...-+|+..-.+++.
T Consensus 113 ~~~ydlvVLDEi~~Al~~g--li~~-eevi~~L~~rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 113 DESYDLVVLDELTYALKYG--YLDV-EEVLEALNARPGMQHVVITGRGAPRE 161 (191)
T ss_pred CCCCCEEEEehhhHHHHCC--CccH-HHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 4678999999998887766 2222 44555666666644454444444443
No 490
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=81.84 E-value=0.85 Score=40.60 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=27.3
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccC
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATA 238 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~ 238 (444)
.-+.+++++||+=...|.. |.. ..+.++.....++..+|+.|-.+
T Consensus 163 ~~~pdILllDEvlavGD~~--F~~--K~~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 163 HVEPDILLLDEVLAVGDAA--FQE--KCLERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred hcCCCEEEEehhhhcCCHH--HHH--HHHHHHHHHHHcCCEEEEEECCH
Confidence 3478999999998876644 432 22233333334556677777553
No 491
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=81.82 E-value=2.9 Score=40.77 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHhCCcc--cCchHHHHHHHH---HHccCCcEEEEccCCCccccc
Q psy7952 30 KVSEQELTAKLKALFGFDS--FKCELQKKAIRH---ILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 30 ~~~~~~~~~~l~~~~g~~~--~~t~~Q~~~~~~---~~~~~~~~ii~apTGsGKT~~ 81 (444)
.++.++-.+.|-+..|+++ +-+..+...+.. +.+.+.|++..+|+|+|||..
T Consensus 169 ~FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThl 225 (449)
T TIGR02688 169 EFTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYI 225 (449)
T ss_pred hcCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHH
Confidence 4455555566666678884 222222222222 233338999999999999966
No 492
>KOG1807|consensus
Probab=81.77 E-value=1.8 Score=44.75 Aligned_cols=63 Identities=13% Similarity=-0.006 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC----ccceeEEEcchhhhhcccCccchH
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN----VRSRNGWISPILSSFYLRFRDDKT 127 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~----~~~~vlil~P~~~L~~~~q~~~~~ 127 (444)
.-|+.|....+.. +--++.+|+|+|||++.+. + .+.+.... ....++++|-|...+ .|..
T Consensus 381 sSq~~A~qs~lty-elsliqgppGTgkt~vtlk---------a-v~tLL~n~s~~~~~epIlvvC~Tnhav-----dq~l 444 (1025)
T KOG1807|consen 381 SSQQFAKQSKLTY-ELSLIQGPPGTGKTLVTLK---------A-VDTLLLNSSGYTEPEPILVVCLTNHAV-----DQYL 444 (1025)
T ss_pred HHHHHHHHHHhhh-hhheeecCCCCCceeehHH---------H-HHHHHhcccccccccceeeeehhhHHH-----HHHH
Confidence 4699999998887 7789999999999988222 2 11122211 224679999999998 6777
Q ss_pred hhh
Q psy7952 128 SIV 130 (444)
Q Consensus 128 ~~l 130 (444)
..+
T Consensus 445 igi 447 (1025)
T KOG1807|consen 445 IGI 447 (1025)
T ss_pred HHH
Confidence 766
No 493
>PHA02244 ATPase-like protein
Probab=81.73 E-value=1.5 Score=42.05 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=18.6
Q ss_pred HHHHHccCCcEEEEccCCCccccc
Q psy7952 58 IRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 58 ~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+..+++.+.++++.+|||+|||..
T Consensus 112 i~r~l~~~~PVLL~GppGtGKTtL 135 (383)
T PHA02244 112 IAKIVNANIPVFLKGGAGSGKNHI 135 (383)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHH
Confidence 334444448999999999999966
No 494
>PRK13531 regulatory ATPase RavA; Provisional
Probab=81.73 E-value=1.6 Score=43.44 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=19.3
Q ss_pred HHHHHHccCCcEEEEccCCCccccc
Q psy7952 57 AIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
++..++.+ .++++.+|+|+|||..
T Consensus 32 ll~aalag-~hVLL~GpPGTGKT~L 55 (498)
T PRK13531 32 CLLAALSG-ESVFLLGPPGIAKSLI 55 (498)
T ss_pred HHHHHccC-CCEEEECCCChhHHHH
Confidence 34444556 8999999999999977
No 495
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=81.69 E-value=1.2 Score=45.65 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHccC-CcEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILLRT-HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~-~~~ii~apTGsGKT~~ 81 (444)
+.|.+.+..+.... .-+++++|||||||.+
T Consensus 302 ~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt 332 (564)
T TIGR02538 302 PDQKALFLEAIHKPQGMVLVTGPTGSGKTVS 332 (564)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 46777777776532 4688999999999977
No 496
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=81.64 E-value=1.7 Score=45.56 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++++|+|+|||..
T Consensus 186 ~gill~G~~G~GKt~~ 201 (644)
T PRK10733 186 KGVLMVGPPGTGKTLL 201 (644)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5699999999999977
No 497
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=81.53 E-value=7 Score=38.05 Aligned_cols=57 Identities=7% Similarity=0.015 Sum_probs=33.9
Q ss_pred EEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc--chhhhhcccCccchHhhhcCCCCceeEEEEeC
Q psy7952 68 IFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS--PILSSFYLRFRDDKTSIVTGRSDLYQLELIVS 144 (444)
Q Consensus 68 ~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~--P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~ 144 (444)
+++++=-|+|||.++. .. ..++.+ ...++++++ ..|.-+ .+|++.+... +.+..+..
T Consensus 103 ImmvGLQGsGKTTt~~---------KL-A~~lkk--~~~kvllVaaD~~RpAA-----~eQL~~La~q---~~v~~f~~ 161 (451)
T COG0541 103 ILMVGLQGSGKTTTAG---------KL-AKYLKK--KGKKVLLVAADTYRPAA-----IEQLKQLAEQ---VGVPFFGS 161 (451)
T ss_pred EEEEeccCCChHhHHH---------HH-HHHHHH--cCCceEEEecccCChHH-----HHHHHHHHHH---cCCceecC
Confidence 7888889999998821 11 222333 333445554 466777 7899888444 44444443
No 498
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=81.20 E-value=1.3 Score=41.72 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=19.5
Q ss_pred HHHHHHHccCCcEEEEccCCCccccc
Q psy7952 56 KAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 56 ~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+.+.....+..++++.+|||+|||..
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHH
Confidence 33444444448999999999999976
No 499
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=81.20 E-value=2.6 Score=41.83 Aligned_cols=74 Identities=7% Similarity=0.089 Sum_probs=56.8
Q ss_pred cceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHH
Q psy7952 105 RSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYL 183 (444)
Q Consensus 105 ~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~ 183 (444)
..++||+|++++-+ ......+ ..+ +.+..++|+....++...+..++ .+..+|+|+|. .
T Consensus 245 ~~~~lVF~~s~~~~-----~~l~~~L~~~~---~~~~~l~g~~~~~~R~~~l~~f~--~G~~~vLVaTd-~--------- 304 (434)
T PRK11192 245 VTRSIVFVRTRERV-----HELAGWLRKAG---INCCYLEGEMVQAKRNEAIKRLT--DGRVNVLVATD-V--------- 304 (434)
T ss_pred CCeEEEEeCChHHH-----HHHHHHHHhCC---CCEEEecCCCCHHHHHHHHHHHh--CCCCcEEEEcc-c---------
Confidence 35779999999998 5666666 566 88999999999999988888776 47899999992 2
Q ss_pred HHHHHhhCCccEEEE
Q psy7952 184 LQHLVRYNKLAYIVV 198 (444)
Q Consensus 184 ~~~~~~~~~~~~iVi 198 (444)
...-.+..++++||.
T Consensus 305 ~~~GiDip~v~~VI~ 319 (434)
T PRK11192 305 AARGIDIDDVSHVIN 319 (434)
T ss_pred cccCccCCCCCEEEE
Confidence 223345667888774
No 500
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=81.15 E-value=4.5 Score=42.73 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=56.6
Q ss_pred CCceEEEEecccchHHHHHHHHHhh--------------cCHHHHHHHHHHHhcCCccEEEEcCc-cccccccCCccEEE
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK--------------VNKHERSRVQESFMRGEINVITATIS-FGMGIDRQNVRFVV 363 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~--------------~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gidi~~~~~Vi 363 (444)
.+.+++|.++|+.-|.+.++.+.+. ++..+|...++...+|+..|+|+|.. +...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 4678999999999999998887765 66788899999999999999999975 45567788888888
Q ss_pred EeC
Q psy7952 364 HWG 366 (444)
Q Consensus 364 ~~~ 366 (444)
...
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 544
Done!