Query psy7952
Match_columns 444
No_of_seqs 165 out of 1757
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 23:01:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 4E-52 1.4E-56 422.2 34.2 376 18-432 13-401 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 2.2E-51 7.6E-56 412.8 32.2 357 33-433 10-377 (523)
3 2db3_A ATP-dependent RNA helic 100.0 2.1E-48 7.1E-53 384.0 26.3 335 33-405 64-416 (434)
4 2j0s_A ATP-dependent RNA helic 100.0 1E-46 3.5E-51 370.3 24.8 336 33-406 45-392 (410)
5 2i4i_A ATP-dependent RNA helic 100.0 1.2E-46 4.2E-51 370.5 24.6 338 33-407 23-393 (417)
6 3sqw_A ATP-dependent RNA helic 100.0 8E-46 2.7E-50 378.8 29.7 350 32-407 28-408 (579)
7 3i5x_A ATP-dependent RNA helic 100.0 1.6E-45 5.5E-50 376.2 30.6 349 32-407 79-459 (563)
8 1xti_A Probable ATP-dependent 100.0 7.1E-46 2.4E-50 361.9 26.7 332 33-400 16-360 (391)
9 3eiq_A Eukaryotic initiation f 100.0 2E-46 6.9E-51 368.5 21.1 336 33-407 48-397 (414)
10 1s2m_A Putative ATP-dependent 100.0 5.3E-45 1.8E-49 356.8 28.4 336 33-407 29-375 (400)
11 3fht_A ATP-dependent RNA helic 100.0 3.2E-45 1.1E-49 359.7 26.0 336 32-405 32-388 (412)
12 3pey_A ATP-dependent RNA helic 100.0 1.1E-44 3.8E-49 353.7 26.0 335 33-407 13-366 (395)
13 1hv8_A Putative ATP-dependent 100.0 1.1E-43 3.8E-48 343.2 26.7 330 33-407 14-355 (367)
14 1fuu_A Yeast initiation factor 100.0 3.3E-46 1.1E-50 364.5 8.1 337 32-407 28-376 (394)
15 2z0m_A 337AA long hypothetical 100.0 5.1E-44 1.8E-48 341.5 22.7 321 34-406 3-331 (337)
16 3fmp_B ATP-dependent RNA helic 100.0 3.4E-45 1.2E-49 366.4 9.5 329 33-400 100-449 (479)
17 3oiy_A Reverse gyrase helicase 100.0 4.5E-43 1.5E-47 344.6 20.9 316 33-395 7-363 (414)
18 3fho_A ATP-dependent RNA helic 100.0 2.3E-43 7.8E-48 354.5 8.5 330 34-405 128-479 (508)
19 4a2p_A RIG-I, retinoic acid in 100.0 2.2E-39 7.5E-44 330.5 20.9 320 50-402 8-513 (556)
20 2p6r_A Afuhel308 helicase; pro 100.0 2.5E-39 8.4E-44 337.9 19.8 321 33-400 11-391 (702)
21 4ddu_A Reverse gyrase; topoiso 100.0 1.4E-38 4.8E-43 342.3 24.1 289 34-369 65-388 (1104)
22 3tbk_A RIG-I helicase domain; 100.0 9.1E-39 3.1E-43 325.8 21.3 320 50-402 5-512 (555)
23 2va8_A SSO2462, SKI2-type heli 100.0 3.2E-38 1.1E-42 330.5 22.6 317 33-398 16-409 (715)
24 2zj8_A DNA helicase, putative 100.0 2.3E-38 7.9E-43 331.5 20.4 320 33-400 9-390 (720)
25 3l9o_A ATP-dependent RNA helic 100.0 1.6E-38 5.5E-43 341.9 18.7 319 41-409 178-610 (1108)
26 2eyq_A TRCF, transcription-rep 100.0 4.5E-37 1.6E-41 332.6 29.9 314 34-398 590-923 (1151)
27 4f92_B U5 small nuclear ribonu 100.0 1.1E-38 3.6E-43 354.6 17.4 349 39-411 69-487 (1724)
28 4a2q_A RIG-I, retinoic acid in 100.0 6.3E-38 2.2E-42 331.4 22.4 322 43-401 243-753 (797)
29 2ykg_A Probable ATP-dependent 100.0 1.7E-38 5.9E-43 332.3 16.2 332 39-402 5-521 (696)
30 2xgj_A ATP-dependent RNA helic 100.0 2E-37 6.9E-42 330.7 23.7 319 41-409 80-512 (1010)
31 1gm5_A RECG; helicase, replica 100.0 1E-38 3.6E-43 330.5 12.1 344 35-429 356-732 (780)
32 1wp9_A ATP-dependent RNA helic 100.0 1.8E-37 6E-42 310.9 20.2 311 50-400 10-478 (494)
33 4f92_B U5 small nuclear ribonu 100.0 2.4E-37 8.2E-42 343.7 22.8 366 39-437 915-1360(1724)
34 4gl2_A Interferon-induced heli 100.0 4.7E-38 1.6E-42 329.2 14.8 324 50-398 8-520 (699)
35 4a4z_A Antiviral helicase SKI2 100.0 7.1E-37 2.4E-41 326.5 22.1 326 34-406 26-503 (997)
36 4a2w_A RIG-I, retinoic acid in 100.0 1.2E-36 4.2E-41 324.8 21.8 322 44-400 244-752 (936)
37 1gku_B Reverse gyrase, TOP-RG; 100.0 6.2E-38 2.1E-42 337.5 9.9 325 33-406 43-463 (1054)
38 1tf5_A Preprotein translocase 100.0 8E-36 2.7E-40 303.4 20.0 316 39-399 75-547 (844)
39 2oca_A DAR protein, ATP-depend 100.0 2E-35 7E-40 297.9 13.8 297 50-395 114-453 (510)
40 3h1t_A Type I site-specific re 100.0 1.2E-34 4.2E-39 297.0 19.4 304 50-395 179-556 (590)
41 2jlq_A Serine protease subunit 100.0 1.2E-35 4.1E-40 293.6 11.0 282 45-395 1-309 (451)
42 2fwr_A DNA repair protein RAD2 100.0 3.4E-35 1.2E-39 293.4 12.5 286 50-397 94-454 (472)
43 2fsf_A Preprotein translocase 100.0 1.3E-33 4.3E-38 286.5 20.6 318 38-399 65-585 (853)
44 2whx_A Serine protease/ntpase/ 100.0 8.1E-35 2.8E-39 296.2 11.6 290 50-407 172-491 (618)
45 1yks_A Genome polyprotein [con 100.0 1.7E-34 5.8E-39 284.1 13.1 273 61-406 5-311 (440)
46 1nkt_A Preprotein translocase 100.0 1.9E-33 6.4E-38 285.5 19.7 323 37-399 101-619 (922)
47 2wv9_A Flavivirin protease NS2 100.0 2.9E-34 9.9E-39 293.9 9.4 282 50-404 216-543 (673)
48 2z83_A Helicase/nucleoside tri 100.0 1.2E-33 4E-38 279.8 9.2 272 59-397 15-313 (459)
49 2xau_A PRE-mRNA-splicing facto 100.0 2.3E-32 8E-37 284.9 17.7 317 33-399 80-445 (773)
50 2v6i_A RNA helicase; membrane, 100.0 7E-33 2.4E-37 272.1 12.9 263 66-395 3-288 (431)
51 3o8b_A HCV NS3 protease/helica 100.0 5.8E-33 2E-37 280.1 7.7 263 53-401 221-518 (666)
52 3dmq_A RNA polymerase-associat 100.0 4.7E-32 1.6E-36 289.9 12.4 314 50-394 154-610 (968)
53 1z63_A Helicase of the SNF2/RA 100.0 2.2E-30 7.6E-35 260.4 18.3 305 50-397 38-453 (500)
54 3rc3_A ATP-dependent RNA helic 100.0 8.1E-30 2.8E-34 260.3 19.0 282 53-409 144-456 (677)
55 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.9E-27 6.6E-32 252.5 22.3 323 31-395 248-707 (1038)
56 3mwy_W Chromo domain-containin 100.0 3.7E-28 1.3E-32 256.1 16.1 316 52-397 239-684 (800)
57 3jux_A Protein translocase sub 100.0 1.2E-26 4E-31 231.0 24.0 320 37-398 65-588 (822)
58 1z3i_X Similar to RAD54-like; 99.9 1.9E-26 6.4E-31 237.3 23.8 99 299-397 415-528 (644)
59 3fe2_A Probable ATP-dependent 99.9 2E-26 7E-31 208.9 12.9 195 33-261 37-238 (242)
60 1vec_A ATP-dependent RNA helic 99.9 2.2E-26 7.5E-31 203.5 11.3 193 33-256 11-203 (206)
61 2oxc_A Probable ATP-dependent 99.9 1.2E-26 4E-31 208.9 8.9 195 33-258 32-226 (230)
62 3iuy_A Probable ATP-dependent 99.9 9.4E-27 3.2E-31 209.3 7.4 193 33-258 28-226 (228)
63 3ber_A Probable ATP-dependent 99.9 7.3E-26 2.5E-30 205.9 11.3 193 33-259 51-246 (249)
64 1t6n_A Probable ATP-dependent 99.9 1.2E-25 4E-30 201.0 12.0 197 32-257 21-217 (220)
65 1q0u_A Bstdead; DEAD protein, 99.9 2.2E-26 7.6E-31 205.5 6.9 196 33-259 12-210 (219)
66 3ly5_A ATP-dependent RNA helic 99.9 1E-25 3.6E-30 206.5 10.7 187 32-250 61-254 (262)
67 1qde_A EIF4A, translation init 99.9 4.5E-26 1.5E-30 204.3 8.1 192 33-259 22-215 (224)
68 3fmo_B ATP-dependent RNA helic 99.9 8.6E-26 3E-30 210.8 9.7 194 33-259 100-296 (300)
69 2gxq_A Heat resistant RNA depe 99.9 2.7E-25 9.3E-30 196.6 11.6 189 33-258 9-203 (207)
70 3bor_A Human initiation factor 99.9 6.9E-26 2.3E-30 204.7 7.3 195 33-258 38-232 (237)
71 2pl3_A Probable ATP-dependent 99.9 4E-25 1.4E-29 199.7 9.9 193 32-259 32-231 (236)
72 1wrb_A DJVLGB; RNA helicase, D 99.9 2.4E-25 8.3E-30 203.3 7.5 197 34-260 32-239 (253)
73 3dkp_A Probable ATP-dependent 99.9 2.1E-25 7.3E-30 202.7 4.9 199 33-261 37-241 (245)
74 1c4o_A DNA nucleotide excision 99.9 2.5E-22 8.4E-27 206.5 25.4 106 299-405 438-558 (664)
75 2ipc_A Preprotein translocase 99.9 3.4E-22 1.2E-26 202.7 25.1 137 36-205 68-215 (997)
76 2hjv_A ATP-dependent RNA helic 99.9 1.1E-21 3.8E-26 166.3 18.7 137 264-407 6-152 (163)
77 2rb4_A ATP-dependent RNA helic 99.9 1.4E-21 4.8E-26 167.7 16.5 136 266-407 6-157 (175)
78 1fuk_A Eukaryotic initiation f 99.9 1.6E-21 5.4E-26 165.7 14.8 121 281-407 17-147 (165)
79 3eaq_A Heat resistant RNA depe 99.9 4.7E-21 1.6E-25 169.5 16.7 123 279-407 16-148 (212)
80 2p6n_A ATP-dependent RNA helic 99.9 4.2E-21 1.4E-25 166.7 15.6 133 265-405 27-170 (191)
81 2jgn_A DBX, DDX3, ATP-dependen 99.9 6.5E-21 2.2E-25 164.7 16.5 138 264-407 16-163 (185)
82 1t5i_A C_terminal domain of A 99.9 1.5E-21 5.3E-26 166.7 11.4 121 279-405 16-147 (172)
83 2vl7_A XPD; helicase, unknown 99.8 1.3E-20 4.5E-25 189.8 15.9 110 283-396 370-520 (540)
84 3i32_A Heat resistant RNA depe 99.8 5.9E-20 2E-24 170.1 15.3 121 280-406 14-144 (300)
85 2yjt_D ATP-dependent RNA helic 99.7 6.6E-22 2.3E-26 168.9 0.0 109 299-407 29-147 (170)
86 2d7d_A Uvrabc system protein B 99.8 8.9E-19 3.1E-23 180.0 20.8 105 299-404 444-563 (661)
87 3crv_A XPD/RAD3 related DNA he 99.8 5.2E-19 1.8E-23 178.9 15.0 321 45-397 1-531 (551)
88 3b6e_A Interferon-induced heli 99.8 3.3E-20 1.1E-24 164.8 2.3 177 32-237 18-216 (216)
89 1rif_A DAR protein, DNA helica 99.7 1E-18 3.5E-23 161.9 4.3 151 50-242 114-266 (282)
90 2fz4_A DNA repair protein RAD2 99.7 1.8E-17 6.1E-22 149.0 7.3 137 50-242 94-232 (237)
91 3llm_A ATP-dependent RNA helic 99.7 4.3E-17 1.5E-21 146.7 9.6 160 51-251 63-228 (235)
92 4a15_A XPD helicase, ATP-depen 99.7 6.3E-16 2.2E-20 157.5 15.9 161 230-397 377-584 (620)
93 1z5z_A Helicase of the SNF2/RA 99.6 5.2E-15 1.8E-19 135.2 8.3 115 279-397 95-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.5 6.2E-08 2.1E-12 98.6 5.2 77 30-118 131-209 (608)
95 4b3f_X DNA-binding protein smu 98.0 1.8E-06 6E-11 88.8 3.1 66 51-133 191-257 (646)
96 2gk6_A Regulator of nonsense t 97.9 1.4E-05 4.6E-10 81.8 6.2 66 51-133 182-248 (624)
97 2xzl_A ATP-dependent helicase 97.7 2.5E-05 8.5E-10 81.7 5.4 66 51-133 362-428 (802)
98 2wjy_A Regulator of nonsense t 97.7 2.3E-05 7.9E-10 81.9 4.7 66 51-133 358-424 (800)
99 3upu_A ATP-dependent DNA helic 97.6 8.1E-05 2.8E-09 73.1 6.9 62 45-118 22-87 (459)
100 3e1s_A Exodeoxyribonuclease V, 97.5 4.8E-05 1.6E-09 76.6 4.6 55 51-118 191-245 (574)
101 3lfu_A DNA helicase II; SF1 he 97.2 0.0054 1.8E-07 62.9 14.9 77 51-144 11-92 (647)
102 3te6_A Regulatory protein SIR3 96.5 0.018 6.1E-07 53.0 11.2 16 66-81 46-61 (318)
103 3syl_A Protein CBBX; photosynt 96.5 0.022 7.5E-07 52.3 11.8 16 66-81 68-83 (309)
104 3vkw_A Replicase large subunit 96.5 0.0036 1.2E-07 60.1 6.4 42 67-130 163-204 (446)
105 3co5_A Putative two-component 96.3 0.033 1.1E-06 44.7 10.1 19 63-81 25-43 (143)
106 3ec2_A DNA replication protein 96.0 0.0068 2.3E-07 50.9 5.1 29 52-81 17-54 (180)
107 3hgt_A HDA1 complex subunit 3; 96.0 0.048 1.6E-06 49.9 10.8 117 287-407 112-247 (328)
108 1l8q_A Chromosomal replication 95.8 0.013 4.3E-07 54.4 6.1 16 66-81 38-53 (324)
109 4b4t_J 26S protease regulatory 95.5 0.043 1.5E-06 52.0 8.9 16 66-81 183-198 (405)
110 2o0j_A Terminase, DNA packagin 95.5 0.13 4.6E-06 48.5 12.2 58 50-118 164-221 (385)
111 2bjv_A PSP operon transcriptio 95.5 0.019 6.6E-07 51.4 6.2 23 59-81 23-45 (265)
112 2z4s_A Chromosomal replication 95.1 0.059 2E-06 52.2 8.5 16 66-81 131-146 (440)
113 4b4t_L 26S protease subunit RP 95.0 0.054 1.8E-06 52.1 7.9 16 66-81 216-231 (437)
114 3bos_A Putative DNA replicatio 94.8 0.038 1.3E-06 48.4 5.9 16 66-81 53-68 (242)
115 3eie_A Vacuolar protein sortin 94.8 0.061 2.1E-06 49.8 7.4 16 66-81 52-67 (322)
116 4a1f_A DNAB helicase, replicat 94.8 0.014 4.9E-07 54.2 2.9 165 46-237 26-205 (338)
117 2q6t_A DNAB replication FORK h 94.7 0.033 1.1E-06 54.1 5.5 129 57-206 189-324 (444)
118 1a5t_A Delta prime, HOLB; zinc 94.6 0.029 1E-06 52.2 4.9 31 52-82 5-41 (334)
119 3h4m_A Proteasome-activating n 94.6 0.048 1.6E-06 49.3 6.1 16 66-81 52-67 (285)
120 2b8t_A Thymidine kinase; deoxy 94.5 0.018 6.2E-07 50.1 2.9 16 66-81 13-28 (223)
121 2chg_A Replication factor C sm 94.5 0.27 9.4E-06 41.9 10.6 40 192-237 102-141 (226)
122 4b4t_I 26S protease regulatory 94.4 0.11 3.8E-06 49.5 8.2 16 66-81 217-232 (437)
123 4b4t_M 26S protease regulatory 94.4 0.048 1.6E-06 52.4 5.7 16 66-81 216-231 (434)
124 2kjq_A DNAA-related protein; s 94.2 0.068 2.3E-06 43.2 5.6 18 63-81 35-52 (149)
125 2r6a_A DNAB helicase, replicat 94.2 0.028 9.6E-07 54.8 3.7 33 48-82 185-220 (454)
126 4b4t_K 26S protease regulatory 94.1 0.11 3.7E-06 49.9 7.6 16 66-81 207-222 (428)
127 3cpe_A Terminase, DNA packagin 94.0 0.2 6.9E-06 50.5 9.8 58 50-118 164-221 (592)
128 4b4t_H 26S protease regulatory 94.0 0.12 4.3E-06 49.7 7.6 17 65-81 243-259 (467)
129 3hu3_A Transitional endoplasmi 93.8 0.064 2.2E-06 52.7 5.5 49 192-240 297-350 (489)
130 3vfd_A Spastin; ATPase, microt 93.6 0.11 3.9E-06 49.3 6.7 16 66-81 149-164 (389)
131 2qz4_A Paraplegin; AAA+, SPG7, 93.5 0.094 3.2E-06 46.6 5.7 16 66-81 40-55 (262)
132 3kl4_A SRP54, signal recogniti 93.4 0.14 4.7E-06 49.3 6.8 52 191-244 178-229 (433)
133 1t5i_A C_terminal domain of A 93.4 0.72 2.5E-05 38.0 10.6 120 106-251 32-152 (172)
134 3cf0_A Transitional endoplasmi 93.4 0.099 3.4E-06 47.8 5.7 16 66-81 50-65 (301)
135 2qp9_X Vacuolar protein sortin 93.3 0.12 4E-06 48.6 6.2 16 66-81 85-100 (355)
136 2orw_A Thymidine kinase; TMTK, 93.3 0.045 1.5E-06 46.1 3.0 16 66-81 4-19 (184)
137 1iqp_A RFCS; clamp loader, ext 93.3 0.11 3.7E-06 47.9 6.0 40 191-236 109-148 (327)
138 3bh0_A DNAB-like replicative h 93.3 0.041 1.4E-06 50.8 3.0 33 48-82 50-85 (315)
139 2d7d_A Uvrabc system protein B 93.3 0.054 1.8E-06 55.5 4.0 60 50-130 13-77 (661)
140 2zpa_A Uncharacterized protein 93.3 0.099 3.4E-06 52.9 5.8 54 50-118 176-230 (671)
141 1xwi_A SKD1 protein; VPS4B, AA 93.2 0.11 3.9E-06 47.9 5.8 16 66-81 46-61 (322)
142 2v1u_A Cell division control p 92.9 0.45 1.5E-05 44.7 9.8 16 66-81 45-60 (387)
143 3pvs_A Replication-associated 92.9 0.26 9E-06 47.7 8.1 16 66-81 51-66 (447)
144 3cf2_A TER ATPase, transitiona 92.9 0.28 9.5E-06 51.0 8.7 46 192-237 297-347 (806)
145 3b9p_A CG5977-PA, isoform A; A 92.9 0.32 1.1E-05 44.1 8.4 16 66-81 55-70 (297)
146 3dm5_A SRP54, signal recogniti 92.9 0.33 1.1E-05 46.6 8.6 15 67-81 102-116 (443)
147 1fnn_A CDC6P, cell division co 92.5 0.45 1.5E-05 44.8 9.2 15 67-81 46-60 (389)
148 3d8b_A Fidgetin-like protein 1 92.5 0.15 5.3E-06 47.8 5.8 16 66-81 118-133 (357)
149 1pjr_A PCRA; DNA repair, DNA r 92.5 0.032 1.1E-06 57.9 1.0 64 50-130 12-76 (724)
150 3u4q_A ATP-dependent helicase/ 92.3 0.033 1.1E-06 61.4 0.9 64 50-130 11-77 (1232)
151 2zan_A Vacuolar protein sortin 92.3 0.16 5.4E-06 49.3 5.7 16 66-81 168-183 (444)
152 1uaa_A REP helicase, protein ( 92.2 0.023 8E-07 58.4 -0.3 77 51-144 4-86 (673)
153 1xx6_A Thymidine kinase; NESG, 92.2 0.12 4.2E-06 43.6 4.2 16 66-81 9-24 (191)
154 3n70_A Transport activator; si 92.2 0.068 2.3E-06 42.9 2.5 20 62-81 21-40 (145)
155 3u61_B DNA polymerase accessor 92.0 0.65 2.2E-05 42.6 9.4 41 192-237 105-145 (324)
156 3bgw_A DNAB-like replicative h 91.9 0.11 3.7E-06 50.4 4.0 33 48-82 179-214 (444)
157 2p6n_A ATP-dependent RNA helic 91.9 0.88 3E-05 38.2 9.3 74 106-199 55-129 (191)
158 2qby_A CDC6 homolog 1, cell di 90.9 0.27 9.1E-06 46.2 5.5 16 66-81 46-61 (386)
159 3cf2_A TER ATPase, transitiona 90.8 0.081 2.8E-06 54.9 1.9 51 192-242 570-628 (806)
160 1sxj_E Activator 1 40 kDa subu 89.8 0.81 2.8E-05 42.5 7.8 43 191-239 133-175 (354)
161 2ce7_A Cell division protein F 89.6 0.42 1.4E-05 46.5 5.8 16 66-81 50-65 (476)
162 1w5s_A Origin recognition comp 88.8 1.8 6.1E-05 41.0 9.6 16 66-81 51-68 (412)
163 2rb4_A ATP-dependent RNA helic 88.7 0.89 3E-05 37.5 6.5 75 106-200 35-110 (175)
164 2j9r_A Thymidine kinase; TK1, 88.7 0.26 8.8E-06 42.3 3.1 16 66-81 29-44 (214)
165 2hjv_A ATP-dependent RNA helic 88.4 0.9 3.1E-05 36.9 6.2 75 106-200 36-111 (163)
166 3e2i_A Thymidine kinase; Zn-bi 88.0 0.54 1.8E-05 40.3 4.6 16 66-81 29-44 (219)
167 1fuk_A Eukaryotic initiation f 87.1 1 3.5E-05 36.6 5.8 75 106-200 31-106 (165)
168 1u94_A RECA protein, recombina 87.0 0.74 2.5E-05 43.0 5.4 26 57-82 50-80 (356)
169 3cmu_A Protein RECA, recombina 86.9 0.81 2.8E-05 52.2 6.5 34 47-82 1406-1444(2050)
170 2orv_A Thymidine kinase; TP4A 86.8 0.7 2.4E-05 40.0 4.7 16 66-81 20-35 (234)
171 2jgn_A DBX, DDX3, ATP-dependen 86.6 0.87 3E-05 38.0 5.2 75 104-198 45-120 (185)
172 3pxi_A Negative regulator of g 86.4 1.1 3.9E-05 46.5 7.0 15 67-81 523-537 (758)
173 1xp8_A RECA protein, recombina 85.8 1.1 3.7E-05 42.1 5.9 26 57-82 61-91 (366)
174 1q57_A DNA primase/helicase; d 85.8 0.49 1.7E-05 46.6 3.7 17 66-82 243-259 (503)
175 2zts_A Putative uncharacterize 85.7 0.12 4.2E-06 45.4 -0.6 51 185-237 128-181 (251)
176 3hws_A ATP-dependent CLP prote 85.4 0.82 2.8E-05 42.8 4.9 16 66-81 52-67 (363)
177 3eaq_A Heat resistant RNA depe 85.2 1.4 4.7E-05 37.7 5.9 73 106-198 32-105 (212)
178 2zr9_A Protein RECA, recombina 85.1 1.3 4.6E-05 41.1 6.2 26 57-82 48-78 (349)
179 3b85_A Phosphate starvation-in 84.4 0.81 2.8E-05 39.1 4.0 31 50-81 8-38 (208)
180 1ypw_A Transitional endoplasmi 83.7 1.1 3.7E-05 47.0 5.3 16 66-81 239-254 (806)
181 1ofh_A ATP-dependent HSL prote 83.4 1.2 4E-05 40.3 4.9 16 66-81 51-66 (310)
182 2z43_A DNA repair and recombin 82.8 2.1 7.1E-05 39.3 6.4 27 57-83 95-125 (324)
183 1ojl_A Transcriptional regulat 82.5 0.56 1.9E-05 42.8 2.3 19 63-81 23-41 (304)
184 3pey_A ATP-dependent RNA helic 82.3 1.5 5.1E-05 41.1 5.3 78 106-203 244-322 (395)
185 2i4i_A ATP-dependent RNA helic 81.9 3.1 0.00011 39.3 7.5 74 105-198 276-350 (417)
186 3fht_A ATP-dependent RNA helic 81.6 1.9 6.4E-05 40.7 5.8 75 106-200 267-342 (412)
187 1qvr_A CLPB protein; coiled co 81.5 1.6 5.5E-05 46.0 5.6 15 67-81 590-604 (854)
188 1jbk_A CLPB protein; beta barr 81.4 0.84 2.9E-05 37.7 2.9 16 66-81 44-59 (195)
189 3nbx_X ATPase RAVA; AAA+ ATPas 81.2 0.61 2.1E-05 45.7 2.2 24 57-81 34-57 (500)
190 3io5_A Recombination and repai 80.9 0.83 2.8E-05 41.7 2.8 42 67-118 30-71 (333)
191 1g5t_A COB(I)alamin adenosyltr 80.7 3 0.0001 35.0 6.0 47 191-240 119-165 (196)
192 1v5w_A DMC1, meiotic recombina 80.5 2.5 8.6E-05 39.1 6.1 27 57-83 110-140 (343)
193 2w58_A DNAI, primosome compone 80.3 0.82 2.8E-05 38.6 2.5 16 66-81 55-70 (202)
194 3i32_A Heat resistant RNA depe 79.7 3.2 0.00011 37.6 6.3 73 106-198 29-102 (300)
195 3lda_A DNA repair protein RAD5 79.5 4.3 0.00015 38.4 7.4 26 57-82 166-195 (400)
196 2db3_A ATP-dependent RNA helic 78.5 5 0.00017 38.4 7.7 72 107-198 302-374 (434)
197 2p65_A Hypothetical protein PF 78.4 0.92 3.2E-05 37.3 2.2 16 66-81 44-59 (187)
198 3cmu_A Protein RECA, recombina 78.1 3.9 0.00014 46.8 7.5 17 66-82 1082-1098(2050)
199 1hv8_A Putative ATP-dependent 77.9 4.5 0.00015 37.2 7.1 75 106-200 239-314 (367)
200 1d2n_A N-ethylmaleimide-sensit 77.6 0.54 1.8E-05 42.0 0.4 16 66-81 65-80 (272)
201 2r44_A Uncharacterized protein 77.0 0.91 3.1E-05 41.8 1.9 22 59-81 41-62 (331)
202 1u0j_A DNA replication protein 77.0 2 6.9E-05 38.1 4.0 48 31-82 70-121 (267)
203 3e70_C DPA, signal recognition 76.9 5.2 0.00018 36.7 6.9 16 66-81 130-145 (328)
204 2oap_1 GSPE-2, type II secreti 76.3 1.6 5.4E-05 43.0 3.4 28 53-81 248-276 (511)
205 2qgz_A Helicase loader, putati 75.6 1.6 5.5E-05 39.8 3.1 16 66-81 153-168 (308)
206 3t15_A Ribulose bisphosphate c 75.3 0.84 2.9E-05 41.3 1.1 16 66-81 37-52 (293)
207 3hr8_A Protein RECA; alpha and 74.7 1.8 6.3E-05 40.2 3.2 25 57-81 48-77 (356)
208 2yjt_D ATP-dependent RNA helic 76.7 0.62 2.1E-05 38.3 0.0 56 106-171 31-87 (170)
209 1lv7_A FTSH; alpha/beta domain 74.2 0.99 3.4E-05 39.8 1.2 16 66-81 46-61 (257)
210 1ex7_A Guanylate kinase; subst 73.4 1.3 4.5E-05 37.0 1.7 16 66-81 2-17 (186)
211 1kgd_A CASK, peripheral plasma 73.1 1.3 4.4E-05 36.7 1.6 16 66-81 6-21 (180)
212 1gm5_A RECG; helicase, replica 73.1 9.9 0.00034 39.4 8.6 69 300-368 417-500 (780)
213 2v3c_C SRP54, signal recogniti 72.7 3.2 0.00011 39.8 4.5 16 66-81 100-115 (432)
214 2c9o_A RUVB-like 1; hexameric 72.5 1.1 3.6E-05 43.6 1.1 16 66-81 64-79 (456)
215 3nwn_A Kinesin-like protein KI 71.8 2 6.8E-05 40.0 2.7 23 59-81 98-121 (359)
216 3cmw_A Protein RECA, recombina 71.5 3.7 0.00013 46.2 5.2 101 57-206 1418-1523(1706)
217 1lvg_A Guanylate kinase, GMP k 70.6 1.6 5.4E-05 36.8 1.6 16 66-81 5-20 (198)
218 2gza_A Type IV secretion syste 70.4 1.8 6.2E-05 40.4 2.1 20 61-81 172-191 (361)
219 1tue_A Replication protein E1; 70.2 1.8 6.2E-05 36.7 1.9 46 32-81 26-74 (212)
220 1njg_A DNA polymerase III subu 70.1 2.5 8.5E-05 36.2 2.9 15 67-81 47-61 (250)
221 1p9r_A General secretion pathw 70.1 2.7 9.1E-05 40.1 3.2 29 53-81 154-183 (418)
222 3trf_A Shikimate kinase, SK; a 69.7 1.4 4.8E-05 36.4 1.1 16 66-81 6-21 (185)
223 1xti_A Probable ATP-dependent 69.6 7.5 0.00026 36.2 6.3 76 106-201 251-327 (391)
224 2qor_A Guanylate kinase; phosp 69.5 1.4 4.9E-05 37.2 1.2 20 61-81 9-28 (204)
225 2eyu_A Twitching motility prot 69.4 1.3 4.4E-05 39.3 0.8 18 63-81 24-41 (261)
226 1g8p_A Magnesium-chelatase 38 69.2 2 6.8E-05 39.6 2.2 16 66-81 46-61 (350)
227 3a8t_A Adenylate isopentenyltr 69.1 1.6 5.4E-05 40.2 1.4 18 66-83 41-58 (339)
228 3uk6_A RUVB-like 2; hexameric 69.1 1.4 4.9E-05 41.0 1.1 16 66-81 71-86 (368)
229 2yhs_A FTSY, cell division pro 69.1 7.8 0.00027 37.7 6.2 15 67-81 295-309 (503)
230 1bg2_A Kinesin; motor protein, 69.0 2.6 8.8E-05 38.7 2.8 22 59-81 71-94 (325)
231 3tau_A Guanylate kinase, GMP k 68.8 1.8 6.1E-05 36.8 1.6 16 66-81 9-24 (208)
232 1um8_A ATP-dependent CLP prote 68.7 1.6 5.6E-05 40.9 1.4 16 66-81 73-88 (376)
233 3lw7_A Adenylate kinase relate 68.6 1.7 5.8E-05 35.3 1.4 15 67-81 3-17 (179)
234 1e9r_A Conjugal transfer prote 68.2 0.81 2.8E-05 44.1 -0.8 16 66-81 54-69 (437)
235 1oyw_A RECQ helicase, ATP-depe 68.2 7.7 0.00026 38.2 6.3 73 106-198 237-310 (523)
236 3exa_A TRNA delta(2)-isopenten 68.0 1.7 5.9E-05 39.5 1.4 17 66-82 4-20 (322)
237 3vaa_A Shikimate kinase, SK; s 67.8 1.9 6.7E-05 36.2 1.6 18 63-81 24-41 (199)
238 2pt7_A CAG-ALFA; ATPase, prote 67.7 2.1 7E-05 39.5 1.9 19 62-81 169-187 (330)
239 3dc4_A Kinesin-like protein NO 67.5 2.6 9E-05 38.9 2.5 28 53-81 74-111 (344)
240 3pfi_A Holliday junction ATP-d 67.3 1.7 6E-05 39.9 1.3 16 66-81 56-71 (338)
241 1qhx_A CPT, protein (chloramph 67.2 1.7 5.7E-05 35.6 1.1 16 66-81 4-19 (178)
242 2r62_A Cell division protease 67.2 0.91 3.1E-05 40.3 -0.7 16 66-81 45-60 (268)
243 1s2m_A Putative ATP-dependent 67.2 7.7 0.00026 36.3 5.9 73 106-198 259-332 (400)
244 3foz_A TRNA delta(2)-isopenten 67.1 1.9 6.4E-05 39.2 1.4 16 67-82 12-27 (316)
245 2vvg_A Kinesin-2; motor protei 67.1 3 0.0001 38.7 2.8 40 42-81 56-106 (350)
246 2j0s_A ATP-dependent RNA helic 67.0 7.7 0.00026 36.4 5.9 73 106-198 277-350 (410)
247 2y65_A Kinesin, kinesin heavy 67.0 3 0.0001 38.9 2.8 29 52-81 63-101 (365)
248 2v1x_A ATP-dependent DNA helic 67.0 8.4 0.00029 38.6 6.3 73 106-198 268-341 (591)
249 3b6u_A Kinesin-like protein KI 66.8 2.9 0.0001 39.0 2.7 28 53-81 81-118 (372)
250 2h58_A Kinesin-like protein KI 66.5 3.1 0.00011 38.2 2.8 24 57-81 72-97 (330)
251 3ney_A 55 kDa erythrocyte memb 66.5 2.2 7.4E-05 36.0 1.6 18 63-81 18-35 (197)
252 3cmw_A Protein RECA, recombina 66.4 5.6 0.00019 44.9 5.2 28 56-83 369-401 (1706)
253 4a14_A Kinesin, kinesin-like p 66.3 3.1 0.00011 38.5 2.8 28 53-81 63-100 (344)
254 1goj_A Kinesin, kinesin heavy 66.3 2.9 0.0001 38.8 2.6 29 53-81 60-97 (355)
255 1ixz_A ATP-dependent metallopr 66.2 2.1 7.1E-05 37.6 1.5 16 66-81 50-65 (254)
256 1t5c_A CENP-E protein, centrom 66.0 3.1 0.00011 38.5 2.7 23 59-81 71-94 (349)
257 2nr8_A Kinesin-like protein KI 65.9 3.1 0.00011 38.7 2.7 23 58-81 96-120 (358)
258 3lre_A Kinesin-like protein KI 65.8 3 0.0001 38.8 2.6 22 59-81 99-122 (355)
259 2zfi_A Kinesin-like protein KI 65.6 3.3 0.00011 38.7 2.8 23 58-81 82-106 (366)
260 1hqc_A RUVB; extended AAA-ATPa 65.5 1.9 6.4E-05 39.3 1.1 16 66-81 39-54 (324)
261 4fcw_A Chaperone protein CLPB; 65.4 1.8 6.1E-05 39.2 1.0 16 66-81 48-63 (311)
262 3gbj_A KIF13B protein; kinesin 65.4 3.2 0.00011 38.5 2.7 23 58-81 85-109 (354)
263 1z6g_A Guanylate kinase; struc 65.4 2.5 8.4E-05 36.3 1.8 19 62-81 21-39 (218)
264 1zp6_A Hypothetical protein AT 65.4 1.5 5E-05 36.5 0.4 18 63-81 8-25 (191)
265 2ze6_A Isopentenyl transferase 65.2 2.1 7.3E-05 37.7 1.4 16 67-82 3-18 (253)
266 2eyq_A TRCF, transcription-rep 65.1 13 0.00045 40.5 7.8 68 299-366 651-733 (1151)
267 2qmh_A HPR kinase/phosphorylas 65.1 2.3 7.9E-05 35.9 1.5 16 66-81 35-50 (205)
268 1x88_A Kinesin-like protein KI 65.0 3.1 0.00011 38.7 2.5 22 59-81 82-105 (359)
269 1y63_A LMAJ004144AAA protein; 65.0 2.1 7.3E-05 35.4 1.3 16 66-81 11-26 (184)
270 1sxj_D Activator 1 41 kDa subu 65.0 3.4 0.00012 38.0 2.8 40 191-236 132-171 (353)
271 1v8k_A Kinesin-like protein KI 64.9 3.1 0.00011 39.4 2.5 23 59-81 148-171 (410)
272 3pxg_A Negative regulator of g 64.6 3.5 0.00012 40.0 2.9 16 66-81 202-217 (468)
273 4etp_A Kinesin-like protein KA 64.4 3.2 0.00011 39.4 2.5 24 57-81 132-157 (403)
274 2j41_A Guanylate kinase; GMP, 64.3 2.3 7.7E-05 35.8 1.3 19 63-82 5-23 (207)
275 1ly1_A Polynucleotide kinase; 64.2 2.3 8E-05 34.7 1.4 15 67-81 4-18 (181)
276 2wbe_C Bipolar kinesin KRP-130 64.0 3.3 0.00011 38.7 2.5 29 53-81 80-117 (373)
277 3u06_A Protein claret segregat 63.9 3.3 0.00011 39.3 2.4 24 57-81 130-155 (412)
278 2heh_A KIF2C protein; kinesin, 63.8 3.5 0.00012 38.7 2.6 23 59-81 128-151 (387)
279 3tr0_A Guanylate kinase, GMP k 63.7 2.6 8.9E-05 35.4 1.6 16 66-81 8-23 (205)
280 3cob_A Kinesin heavy chain-lik 63.7 3.1 0.0001 38.9 2.2 23 58-81 72-96 (369)
281 3a00_A Guanylate kinase, GMP k 63.3 2.8 9.5E-05 34.7 1.7 16 66-81 2-17 (186)
282 3bor_A Human initiation factor 63.0 13 0.00045 31.9 6.1 68 299-366 97-181 (237)
283 1kag_A SKI, shikimate kinase I 63.0 2.9 9.8E-05 34.0 1.7 16 66-81 5-20 (173)
284 3kb2_A SPBC2 prophage-derived 63.0 2.5 8.6E-05 34.2 1.4 15 67-81 3-17 (173)
285 1wp9_A ATP-dependent RNA helic 63.0 12 0.0004 35.8 6.4 78 104-201 360-446 (494)
286 2qby_B CDC6 homolog 3, cell di 62.8 4.3 0.00015 37.9 3.1 16 66-81 46-61 (384)
287 3iij_A Coilin-interacting nucl 62.7 2.8 9.6E-05 34.4 1.6 16 66-81 12-27 (180)
288 3jvv_A Twitching mobility prot 62.5 2.5 8.5E-05 39.4 1.4 16 66-81 124-139 (356)
289 3t0q_A AGR253WP; kinesin, alph 62.5 3.1 0.00011 38.6 2.0 23 58-81 78-102 (349)
290 2x8a_A Nuclear valosin-contain 62.4 2.7 9.1E-05 37.5 1.5 16 66-81 45-60 (274)
291 1s96_A Guanylate kinase, GMP k 62.4 2.8 9.7E-05 36.0 1.6 21 60-81 12-32 (219)
292 2owm_A Nckin3-434, related to 62.4 4 0.00014 39.1 2.8 28 53-81 116-153 (443)
293 4gp7_A Metallophosphoesterase; 62.1 2.4 8.3E-05 34.6 1.1 16 66-81 10-25 (171)
294 1znw_A Guanylate kinase, GMP k 62.0 2.9 0.0001 35.3 1.6 21 60-81 16-36 (207)
295 3crm_A TRNA delta(2)-isopenten 62.0 2.6 9E-05 38.5 1.4 17 67-83 7-23 (323)
296 2ffh_A Protein (FFH); SRP54, s 61.7 28 0.00097 33.0 8.6 15 67-81 100-114 (425)
297 1in4_A RUVB, holliday junction 61.6 2.9 9.9E-05 38.5 1.6 16 66-81 52-67 (334)
298 4akg_A Glutathione S-transfera 61.3 3.6 0.00012 48.6 2.6 27 56-82 1258-1284(2695)
299 1zuh_A Shikimate kinase; alpha 61.0 2.7 9.1E-05 34.1 1.1 17 66-82 8-24 (168)
300 3bfn_A Kinesin-like protein KI 60.9 3.3 0.00011 38.9 1.8 29 52-81 77-115 (388)
301 3lnc_A Guanylate kinase, GMP k 60.8 1.5 5.1E-05 37.9 -0.5 20 61-81 24-43 (231)
302 3fmp_B ATP-dependent RNA helic 60.5 1.8 6.2E-05 42.1 0.0 72 106-197 334-406 (479)
303 1iy2_A ATP-dependent metallopr 60.3 3.1 0.00011 37.0 1.6 16 66-81 74-89 (278)
304 1f9v_A Kinesin-like protein KA 60.3 3.3 0.00011 38.3 1.8 28 53-81 65-101 (347)
305 2ewv_A Twitching motility prot 59.5 2.8 9.5E-05 39.4 1.1 16 66-81 137-152 (372)
306 1ye8_A Protein THEP1, hypothet 59.3 3.3 0.00011 34.2 1.4 15 67-81 2-16 (178)
307 1sxj_C Activator 1 40 kDa subu 59.2 6 0.00021 36.3 3.4 38 192-235 110-147 (340)
308 3fho_A ATP-dependent RNA helic 59.1 3.1 0.00011 40.8 1.5 75 106-200 358-433 (508)
309 3d3q_A TRNA delta(2)-isopenten 59.0 3.2 0.00011 38.3 1.4 17 67-83 9-25 (340)
310 2z0m_A 337AA long hypothetical 58.7 19 0.00065 32.4 6.8 73 105-200 220-292 (337)
311 2rep_A Kinesin-like protein KI 58.4 3.8 0.00013 38.4 1.8 38 43-81 84-132 (376)
312 1kht_A Adenylate kinase; phosp 58.3 3.4 0.00012 34.1 1.4 16 66-81 4-19 (192)
313 1c4o_A DNA nucleotide excision 58.2 15 0.00051 37.4 6.3 79 106-204 440-519 (664)
314 2chq_A Replication factor C sm 58.0 5 0.00017 36.1 2.6 15 67-81 40-54 (319)
315 1gvn_B Zeta; postsegregational 57.8 3.6 0.00012 37.0 1.5 16 66-81 34-49 (287)
316 3sqw_A ATP-dependent RNA helic 57.3 14 0.00048 36.8 5.9 79 106-201 289-368 (579)
317 1g41_A Heat shock protein HSLU 57.3 3.4 0.00012 39.6 1.3 17 66-82 51-67 (444)
318 3pxi_A Negative regulator of g 57.2 5.3 0.00018 41.4 2.9 18 66-83 202-219 (758)
319 4eun_A Thermoresistant glucoki 57.2 4 0.00014 34.2 1.6 16 66-81 30-45 (200)
320 4f4c_A Multidrug resistance pr 57.1 25 0.00086 38.9 8.3 74 159-237 1201-1275(1321)
321 3eph_A TRNA isopentenyltransfe 57.0 3.5 0.00012 39.0 1.3 16 67-82 4-19 (409)
322 3i5x_A ATP-dependent RNA helic 57.0 14 0.00048 36.5 5.9 79 106-201 340-419 (563)
323 1j8m_F SRP54, signal recogniti 56.6 2.7 9.2E-05 38.1 0.5 15 67-81 100-114 (297)
324 1ry6_A Internal kinesin; kines 56.4 5.2 0.00018 37.2 2.4 14 68-81 88-101 (360)
325 2rhm_A Putative kinase; P-loop 56.4 3.7 0.00013 33.9 1.3 16 66-81 6-21 (193)
326 1f2t_A RAD50 ABC-ATPase; DNA d 56.3 4 0.00014 32.5 1.4 15 67-81 25-39 (149)
327 2r2a_A Uncharacterized protein 56.3 3.7 0.00013 34.6 1.2 16 67-82 7-22 (199)
328 2bdt_A BH3686; alpha-beta prot 56.3 3.9 0.00013 33.8 1.4 16 66-81 3-18 (189)
329 3eiq_A Eukaryotic initiation f 56.1 7.4 0.00025 36.6 3.5 73 106-198 281-354 (414)
330 1via_A Shikimate kinase; struc 56.0 4.3 0.00015 33.0 1.6 16 66-81 5-20 (175)
331 1knq_A Gluconate kinase; ALFA/ 55.9 3.6 0.00012 33.5 1.1 16 66-81 9-24 (175)
332 3vkg_A Dynein heavy chain, cyt 55.4 9.6 0.00033 45.8 4.8 46 34-81 875-922 (3245)
333 3t61_A Gluconokinase; PSI-biol 55.3 4.1 0.00014 34.1 1.4 16 66-81 19-34 (202)
334 3vkg_A Dynein heavy chain, cyt 55.2 5.4 0.00018 47.8 2.7 27 55-81 1294-1320(3245)
335 1nks_A Adenylate kinase; therm 55.0 4 0.00014 33.6 1.3 15 67-81 3-17 (194)
336 3nwj_A ATSK2; P loop, shikimat 54.9 4.7 0.00016 35.4 1.7 17 64-81 48-64 (250)
337 2oca_A DAR protein, ATP-depend 54.8 63 0.0021 31.2 10.2 93 108-226 351-444 (510)
338 3cm0_A Adenylate kinase; ATP-b 54.7 4.3 0.00015 33.4 1.4 16 66-81 5-20 (186)
339 2r2a_A Uncharacterized protein 54.5 4.5 0.00015 34.1 1.5 14 192-205 87-100 (199)
340 2iyv_A Shikimate kinase, SK; t 54.3 4.3 0.00015 33.4 1.3 16 66-81 3-18 (184)
341 3fb4_A Adenylate kinase; psych 54.0 4.3 0.00015 34.4 1.3 15 67-81 2-16 (216)
342 1tev_A UMP-CMP kinase; ploop, 53.8 4.5 0.00015 33.4 1.4 16 66-81 4-19 (196)
343 2ehv_A Hypothetical protein PH 53.8 4.7 0.00016 34.9 1.6 18 63-81 29-46 (251)
344 1e6c_A Shikimate kinase; phosp 53.7 5 0.00017 32.4 1.6 16 66-81 3-18 (173)
345 3dl0_A Adenylate kinase; phosp 53.6 4.4 0.00015 34.4 1.3 15 67-81 2-16 (216)
346 1sxj_A Activator 1 95 kDa subu 53.6 3.9 0.00013 40.2 1.1 43 192-239 148-190 (516)
347 3c8u_A Fructokinase; YP_612366 53.6 4.8 0.00016 34.0 1.5 16 66-81 23-38 (208)
348 2bwj_A Adenylate kinase 5; pho 53.2 6.3 0.00022 32.6 2.2 16 66-81 13-28 (199)
349 3dmq_A RNA polymerase-associat 53.1 31 0.001 36.8 8.0 80 105-202 503-584 (968)
350 3sr0_A Adenylate kinase; phosp 52.3 4.9 0.00017 34.1 1.4 16 67-82 2-17 (206)
351 1nij_A Hypothetical protein YJ 52.2 5 0.00017 36.6 1.5 15 67-81 6-20 (318)
352 1zd8_A GTP:AMP phosphotransfer 52.1 4.8 0.00016 34.5 1.3 16 66-81 8-23 (227)
353 4akg_A Glutathione S-transfera 52.1 13 0.00044 44.1 5.1 44 34-81 892-939 (2695)
354 2c95_A Adenylate kinase 1; tra 52.0 7.3 0.00025 32.1 2.5 16 66-81 10-25 (196)
355 3f9v_A Minichromosome maintena 51.8 4.8 0.00016 40.4 1.4 15 67-81 329-343 (595)
356 2j37_W Signal recognition part 51.6 54 0.0018 31.9 8.8 15 67-81 103-117 (504)
357 2w0m_A SSO2452; RECA, SSPF, un 51.5 5.4 0.00019 33.9 1.6 45 191-238 120-168 (235)
358 1jjv_A Dephospho-COA kinase; P 51.3 4.6 0.00016 33.9 1.1 15 67-81 4-18 (206)
359 2cvh_A DNA repair and recombin 50.9 4.5 0.00015 34.2 0.9 25 57-81 8-36 (220)
360 1qf9_A UMP/CMP kinase, protein 50.9 5.1 0.00018 32.9 1.3 15 67-81 8-22 (194)
361 2dhr_A FTSH; AAA+ protein, hex 50.6 4.8 0.00016 39.3 1.2 16 66-81 65-80 (499)
362 3umf_A Adenylate kinase; rossm 50.6 5.4 0.00018 34.1 1.4 17 66-82 30-46 (217)
363 3uie_A Adenylyl-sulfate kinase 50.5 5.4 0.00019 33.4 1.4 16 66-81 26-41 (200)
364 1zak_A Adenylate kinase; ATP:A 50.5 5.7 0.00019 33.8 1.5 16 66-81 6-21 (222)
365 2i3b_A HCR-ntpase, human cance 50.4 6.2 0.00021 32.9 1.7 43 190-238 103-145 (189)
366 3kta_A Chromosome segregation 50.4 5.3 0.00018 32.7 1.3 15 67-81 28-42 (182)
367 3qf7_A RAD50; ABC-ATPase, ATPa 50.4 5.3 0.00018 37.3 1.4 15 67-81 25-39 (365)
368 1w36_B RECB, exodeoxyribonucle 50.3 3.9 0.00013 44.8 0.6 50 67-130 18-76 (1180)
369 2cdn_A Adenylate kinase; phosp 50.2 5.5 0.00019 33.3 1.4 16 66-81 21-36 (201)
370 2jaq_A Deoxyguanosine kinase; 50.2 5.5 0.00019 33.1 1.4 15 67-81 2-16 (205)
371 1sxj_B Activator 1 37 kDa subu 50.2 9.6 0.00033 34.3 3.1 38 192-235 107-144 (323)
372 4ag6_A VIRB4 ATPase, type IV s 50.0 6 0.00021 37.2 1.7 16 66-81 36-51 (392)
373 3k1j_A LON protease, ATP-depen 50.0 9 0.00031 38.5 3.1 24 58-82 54-77 (604)
374 1cke_A CK, MSSA, protein (cyti 49.7 5.6 0.00019 33.9 1.4 17 66-82 6-22 (227)
375 2qen_A Walker-type ATPase; unk 49.7 9.3 0.00032 34.8 3.0 28 53-81 19-47 (350)
376 2vli_A Antibiotic resistance p 49.7 5.4 0.00018 32.6 1.2 16 66-81 6-21 (183)
377 1jr3_A DNA polymerase III subu 49.6 9.1 0.00031 35.4 2.9 15 67-81 40-54 (373)
378 1aky_A Adenylate kinase; ATP:A 49.6 6.2 0.00021 33.5 1.6 16 66-81 5-20 (220)
379 2dr3_A UPF0273 protein PH0284; 49.5 5.9 0.0002 34.1 1.5 45 191-237 127-172 (247)
380 2v54_A DTMP kinase, thymidylat 49.5 6.3 0.00021 32.9 1.6 16 66-81 5-20 (204)
381 3auy_A DNA double-strand break 49.4 5.4 0.00018 37.3 1.3 16 66-81 26-41 (371)
382 3tif_A Uncharacterized ABC tra 49.3 6.2 0.00021 34.2 1.6 16 66-81 32-47 (235)
383 2pt5_A Shikimate kinase, SK; a 49.0 6.1 0.00021 31.7 1.4 15 67-81 2-16 (168)
384 2bbw_A Adenylate kinase 4, AK4 48.9 6.4 0.00022 34.2 1.7 16 66-81 28-43 (246)
385 3a4m_A L-seryl-tRNA(SEC) kinas 48.9 5.8 0.0002 34.9 1.4 16 66-81 5-20 (260)
386 1ukz_A Uridylate kinase; trans 48.9 5.9 0.0002 33.1 1.4 16 66-81 16-31 (203)
387 2plr_A DTMP kinase, probable t 48.9 5.9 0.0002 33.2 1.4 16 66-81 5-20 (213)
388 1e4v_A Adenylate kinase; trans 48.5 5.7 0.00019 33.6 1.2 15 67-81 2-16 (214)
389 3asz_A Uridine kinase; cytidin 48.5 5.9 0.0002 33.3 1.3 16 66-81 7-22 (211)
390 2v9p_A Replication protein E1; 47.9 5.6 0.00019 36.0 1.1 16 66-81 127-142 (305)
391 1m7g_A Adenylylsulfate kinase; 47.8 7.1 0.00024 32.9 1.7 19 62-81 23-41 (211)
392 3ly5_A ATP-dependent RNA helic 47.7 22 0.00074 31.1 5.0 67 299-366 125-209 (262)
393 2cbz_A Multidrug resistance-as 47.6 5.4 0.00018 34.6 0.9 16 66-81 32-47 (237)
394 3dkp_A Probable ATP-dependent 47.5 47 0.0016 28.3 7.1 68 299-366 97-183 (245)
395 1r6b_X CLPA protein; AAA+, N-t 47.0 8.8 0.0003 39.7 2.6 17 66-82 208-224 (758)
396 2z0h_A DTMP kinase, thymidylat 47.0 6.6 0.00023 32.4 1.4 14 68-81 3-16 (197)
397 1t6n_A Probable ATP-dependent 47.0 25 0.00084 29.5 5.1 67 300-366 82-166 (220)
398 2if2_A Dephospho-COA kinase; a 46.7 6.5 0.00022 32.8 1.3 15 67-81 3-17 (204)
399 2pbr_A DTMP kinase, thymidylat 46.6 6.8 0.00023 32.2 1.4 15 67-81 2-16 (195)
400 2qt1_A Nicotinamide riboside k 46.5 6.6 0.00023 32.9 1.3 16 66-81 22-37 (207)
401 1uf9_A TT1252 protein; P-loop, 46.4 5.9 0.0002 33.0 1.0 16 66-81 9-24 (203)
402 4a74_A DNA repair and recombin 46.3 6 0.0002 33.7 1.0 25 57-81 13-41 (231)
403 1n0w_A DNA repair protein RAD5 46.1 7.3 0.00025 33.5 1.5 27 57-83 12-42 (243)
404 3u4q_B ATP-dependent helicase/ 45.8 3.4 0.00012 45.2 -0.8 44 280-323 322-366 (1166)
405 1htw_A HI0065; nucleotide-bind 45.8 10 0.00034 30.5 2.2 16 66-81 34-49 (158)
406 2xb4_A Adenylate kinase; ATP-b 45.7 7.1 0.00024 33.4 1.4 15 67-81 2-16 (223)
407 1sgw_A Putative ABC transporte 45.7 8.3 0.00028 32.9 1.8 16 66-81 36-51 (214)
408 2p5t_B PEZT; postsegregational 45.6 5.8 0.0002 34.7 0.8 16 66-81 33-48 (253)
409 1qvr_A CLPB protein; coiled co 45.4 9.2 0.00031 40.2 2.4 16 66-81 192-207 (854)
410 2wwf_A Thymidilate kinase, put 45.4 7.6 0.00026 32.5 1.5 16 66-81 11-26 (212)
411 3tlx_A Adenylate kinase 2; str 45.3 7.2 0.00025 33.9 1.4 16 66-81 30-45 (243)
412 3be4_A Adenylate kinase; malar 45.2 7.7 0.00026 32.9 1.5 16 66-81 6-21 (217)
413 1ak2_A Adenylate kinase isoenz 45.1 7.5 0.00026 33.4 1.4 16 66-81 17-32 (233)
414 3m6a_A ATP-dependent protease 44.9 7.6 0.00026 38.4 1.6 16 66-81 109-124 (543)
415 4h1g_A Maltose binding protein 44.7 10 0.00035 38.9 2.6 24 57-81 454-479 (715)
416 2pcj_A ABC transporter, lipopr 44.6 7.9 0.00027 33.2 1.5 16 66-81 31-46 (224)
417 2pze_A Cystic fibrosis transme 44.5 8.2 0.00028 33.2 1.6 18 63-81 33-50 (229)
418 2yvu_A Probable adenylyl-sulfa 44.4 7.7 0.00026 31.8 1.4 16 66-81 14-29 (186)
419 1cr0_A DNA primase/helicase; R 44.3 6.3 0.00022 35.3 0.9 24 57-81 24-51 (296)
420 2ius_A DNA translocase FTSK; n 44.3 8.7 0.0003 37.6 1.9 16 66-81 168-183 (512)
421 2pez_A Bifunctional 3'-phospho 43.9 7.2 0.00025 31.8 1.1 16 66-81 6-21 (179)
422 4e22_A Cytidylate kinase; P-lo 43.9 7.6 0.00026 33.9 1.3 16 66-81 28-43 (252)
423 2ghi_A Transport protein; mult 43.6 8.6 0.00029 33.9 1.6 16 66-81 47-62 (260)
424 3oiy_A Reverse gyrase helicase 43.3 39 0.0013 31.6 6.3 68 299-366 63-147 (414)
425 2ff7_A Alpha-hemolysin translo 43.2 8.8 0.0003 33.5 1.6 16 66-81 36-51 (247)
426 1nn5_A Similar to deoxythymidy 43.2 8.6 0.00029 32.2 1.5 16 66-81 10-25 (215)
427 1g6h_A High-affinity branched- 43.1 8.8 0.0003 33.7 1.6 16 66-81 34-49 (257)
428 3gfo_A Cobalt import ATP-bindi 42.6 8.9 0.0003 34.1 1.5 16 66-81 35-50 (275)
429 3qks_A DNA double-strand break 42.5 8.6 0.00029 32.3 1.4 16 66-81 24-39 (203)
430 2gno_A DNA polymerase III, gam 42.3 19 0.00065 32.5 3.7 39 191-235 81-119 (305)
431 2grj_A Dephospho-COA kinase; T 42.2 7.8 0.00027 32.3 1.1 15 67-81 14-28 (192)
432 4g1u_C Hemin import ATP-bindin 42.0 9.4 0.00032 33.8 1.6 16 66-81 38-53 (266)
433 1ji0_A ABC transporter; ATP bi 41.9 9.5 0.00032 33.1 1.6 16 66-81 33-48 (240)
434 1vht_A Dephospho-COA kinase; s 41.7 8 0.00027 32.7 1.1 16 66-81 5-20 (218)
435 2fna_A Conserved hypothetical 41.6 15 0.00051 33.5 3.0 27 53-81 20-46 (357)
436 1r6b_X CLPA protein; AAA+, N-t 41.5 7.4 0.00025 40.3 1.0 15 67-81 490-504 (758)
437 3iuy_A Probable ATP-dependent 41.4 46 0.0016 28.0 6.0 67 299-366 93-175 (228)
438 1mv5_A LMRA, multidrug resista 41.3 8.2 0.00028 33.6 1.1 16 66-81 29-44 (243)
439 1rj9_A FTSY, signal recognitio 41.1 9.6 0.00033 34.5 1.6 16 66-81 103-118 (304)
440 2xxa_A Signal recognition part 41.1 7.6 0.00026 37.2 0.9 16 66-81 101-116 (433)
441 1b0u_A Histidine permease; ABC 41.0 9.9 0.00034 33.5 1.6 16 66-81 33-48 (262)
442 2qi9_C Vitamin B12 import ATP- 40.9 10 0.00034 33.2 1.6 16 66-81 27-42 (249)
443 2zu0_C Probable ATP-dependent 40.9 7.8 0.00027 34.3 0.9 16 66-81 47-62 (267)
444 4f4c_A Multidrug resistance pr 40.6 68 0.0023 35.5 8.5 52 157-208 536-588 (1321)
445 2nq2_C Hypothetical ABC transp 40.6 10 0.00035 33.2 1.6 16 66-81 32-47 (253)
446 2yz2_A Putative ABC transporte 40.4 8.1 0.00028 34.2 0.9 16 66-81 34-49 (266)
447 2dyk_A GTP-binding protein; GT 40.4 9.6 0.00033 29.9 1.3 15 67-81 3-17 (161)
448 1vpl_A ABC transporter, ATP-bi 40.2 10 0.00036 33.2 1.6 16 66-81 42-57 (256)
449 3b9q_A Chloroplast SRP recepto 40.1 9.6 0.00033 34.4 1.4 16 66-81 101-116 (302)
450 3nh6_A ATP-binding cassette SU 40.1 7.5 0.00026 35.2 0.6 16 66-81 81-96 (306)
451 1rz3_A Hypothetical protein rb 40.0 9.6 0.00033 31.9 1.3 16 66-81 23-38 (201)
452 2px0_A Flagellar biosynthesis 40.0 10 0.00034 34.2 1.5 16 66-81 106-121 (296)
453 1nlf_A Regulatory protein REPA 39.9 10 0.00034 33.7 1.4 24 60-84 26-49 (279)
454 1xjc_A MOBB protein homolog; s 39.8 10 0.00035 30.9 1.4 15 67-81 6-20 (169)
455 3qkt_A DNA double-strand break 39.8 9.7 0.00033 35.0 1.4 15 67-81 25-39 (339)
456 2olj_A Amino acid ABC transpor 39.8 11 0.00037 33.3 1.6 16 66-81 51-66 (263)
457 3sop_A Neuronal-specific septi 39.8 9.2 0.00032 33.9 1.2 15 67-81 4-18 (270)
458 2d2e_A SUFC protein; ABC-ATPas 39.7 11 0.00037 33.0 1.6 16 66-81 30-45 (250)
459 1gtv_A TMK, thymidylate kinase 39.6 5.6 0.00019 33.5 -0.3 14 68-81 3-16 (214)
460 1ltq_A Polynucleotide kinase; 39.5 9.9 0.00034 34.0 1.4 15 67-81 4-18 (301)
461 1np6_A Molybdopterin-guanine d 39.5 10 0.00036 31.0 1.4 16 66-81 7-22 (174)
462 1odf_A YGR205W, hypothetical 3 39.3 10 0.00035 34.0 1.4 15 67-81 33-47 (290)
463 1h65_A Chloroplast outer envel 39.2 13 0.00045 32.7 2.1 38 44-81 12-55 (270)
464 1z2a_A RAS-related protein RAB 39.1 10 0.00035 30.0 1.3 15 67-81 7-21 (168)
465 2ixe_A Antigen peptide transpo 39.0 11 0.00038 33.4 1.6 16 66-81 46-61 (271)
466 3zvl_A Bifunctional polynucleo 39.0 60 0.0021 30.6 6.9 16 66-81 259-274 (416)
467 2ce2_X GTPase HRAS; signaling 38.9 10 0.00034 29.8 1.2 15 67-81 5-19 (166)
468 2ihy_A ABC transporter, ATP-bi 38.7 11 0.00039 33.5 1.6 16 66-81 48-63 (279)
469 1uj2_A Uridine-cytidine kinase 38.5 9.5 0.00033 33.2 1.1 17 67-83 24-40 (252)
470 3fe2_A Probable ATP-dependent 38.4 46 0.0016 28.4 5.5 64 299-366 101-184 (242)
471 3hjh_A Transcription-repair-co 38.4 17 0.00058 35.3 2.9 86 64-172 14-109 (483)
472 1fuu_A Yeast initiation factor 38.3 6.7 0.00023 36.5 0.0 56 106-171 260-316 (394)
473 2p5s_A RAS and EF-hand domain 38.2 11 0.00036 31.2 1.3 16 66-81 29-44 (199)
474 1svm_A Large T antigen; AAA+ f 38.2 11 0.00039 35.1 1.6 16 66-81 170-185 (377)
475 2v6i_A RNA helicase; membrane, 38.1 28 0.00097 33.0 4.4 52 106-171 172-224 (431)
476 4gl2_A Interferon-induced heli 38.1 16 0.00056 37.1 2.9 76 105-197 400-487 (699)
477 2vhj_A Ntpase P4, P4; non- hyd 38.1 11 0.00037 34.4 1.3 16 66-81 124-139 (331)
478 3ake_A Cytidylate kinase; CMP 37.9 10 0.00034 31.6 1.1 15 67-81 4-18 (208)
479 1z0j_A RAB-22, RAS-related pro 37.9 11 0.00038 29.9 1.3 15 67-81 8-22 (170)
480 2ged_A SR-beta, signal recogni 37.7 11 0.00038 30.8 1.3 16 66-81 49-64 (193)
481 1tq4_A IIGP1, interferon-induc 37.6 14 0.00049 35.0 2.2 15 67-81 71-85 (413)
482 3tqc_A Pantothenate kinase; bi 37.6 19 0.00065 32.8 2.9 15 67-81 94-108 (321)
483 1kao_A RAP2A; GTP-binding prot 37.5 11 0.00038 29.6 1.3 15 67-81 5-19 (167)
484 1g16_A RAS-related protein SEC 37.4 11 0.00037 29.9 1.2 15 67-81 5-19 (170)
485 1w4r_A Thymidine kinase; type 37.4 5.2 0.00018 33.5 -0.8 16 66-81 21-36 (195)
486 2onk_A Molybdate/tungstate ABC 37.3 12 0.00039 32.6 1.4 16 66-81 25-40 (240)
487 1ek0_A Protein (GTP-binding pr 37.2 11 0.00039 29.7 1.3 15 67-81 5-19 (170)
488 1ky3_A GTP-binding protein YPT 37.0 11 0.00039 30.2 1.3 16 66-81 9-24 (182)
489 2f1r_A Molybdopterin-guanine d 37.0 6.1 0.00021 32.3 -0.4 15 67-81 4-18 (171)
490 1njg_A DNA polymerase III subu 36.9 33 0.0011 28.8 4.3 38 193-236 127-164 (250)
491 1a7j_A Phosphoribulokinase; tr 36.8 11 0.00037 33.9 1.1 15 67-81 7-21 (290)
492 1e69_A Chromosome segregation 36.7 13 0.00043 33.9 1.6 16 66-81 25-40 (322)
493 2f6r_A COA synthase, bifunctio 36.6 10 0.00035 33.8 1.0 15 67-81 77-91 (281)
494 3r20_A Cytidylate kinase; stru 36.5 12 0.00041 32.3 1.4 17 66-82 10-26 (233)
495 1zd9_A ADP-ribosylation factor 36.2 8.7 0.0003 31.5 0.4 30 52-81 9-38 (188)
496 1u8z_A RAS-related protein RAL 36.0 12 0.00042 29.4 1.3 16 66-81 5-20 (168)
497 1yks_A Genome polyprotein [con 36.0 16 0.00054 35.0 2.2 52 106-171 178-230 (440)
498 1wms_A RAB-9, RAB9, RAS-relate 35.9 12 0.00042 29.9 1.3 15 67-81 9-23 (177)
499 2f9l_A RAB11B, member RAS onco 35.8 13 0.00043 30.8 1.4 15 67-81 7-21 (199)
500 2erx_A GTP-binding protein DI- 35.7 12 0.00043 29.5 1.3 16 66-81 4-19 (172)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4e-52 Score=422.22 Aligned_cols=376 Identities=29% Similarity=0.513 Sum_probs=309.3
Q ss_pred CCCCCcCCCCCCCCC-HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCc
Q psy7952 18 SLTGNQQDRKGGKVS-EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGA 96 (444)
Q Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~ 96 (444)
..+....+|....++ ...+.+.|++.||+..++ ++|.++++.++.| +++++.+|||+|||++ |++|+
T Consensus 13 ~~~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~r-p~Q~~~i~~il~g-~d~lv~~pTGsGKTl~--------~~lpa-- 80 (591)
T 2v1x_A 13 EYDSSPAAWNKEDFPWSGKVKDILQNVFKLEKFR-PLQLETINVTMAG-KEVFLVMPTGGGKSLC--------YQLPA-- 80 (591)
T ss_dssp ---CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCC-TTHHHHHHHHHTT-CCEEEECCTTSCTTHH--------HHHHH--
T ss_pred CCCcchhccccccCCCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHHcC-CCEEEEECCCChHHHH--------HHHHH--
Confidence 344455666665554 778999999999999844 8999999999999 9999999999999999 88888
Q ss_pred cccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCcc
Q psy7952 97 DFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERA 175 (444)
Q Consensus 97 ~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l 175 (444)
+...+.. ||++|+++|+ .++++.+ ..+ +.+..++++....+.......+....+.++|+|+||+++
T Consensus 81 --l~~~g~~---lVisP~~~L~-----~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L 147 (591)
T 2v1x_A 81 --LCSDGFT---LVICPLISLM-----EDQLMVLKQLG---ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKI 147 (591)
T ss_dssp --HTSSSEE---EEECSCHHHH-----HHHHHHHHHHT---CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHH
T ss_pred --HHcCCcE---EEEeCHHHHH-----HHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHh
Confidence 6655555 9999999999 7888888 667 889999999988877777666654467899999999998
Q ss_pred ccc-cHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCC
Q psy7952 176 VTE-SFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNK 254 (444)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~ 254 (444)
... .|...+.......++++|||||||++.+||++|++.+..+..+...+++ .+++++|||+++....++...++++.
T Consensus 148 ~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~-~~ii~lSAT~~~~v~~~i~~~l~~~~ 226 (591)
T 2v1x_A 148 AKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPN-ASLIGLTATATNHVLTDAQKILCIEK 226 (591)
T ss_dssp HSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTT-SEEEEEESSCCHHHHHHHHHHTTCCS
T ss_pred hccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCC-CcEEEEecCCCHHHHHHHHHHhCCCC
Confidence 642 3444555566678999999999999999999999988877666666665 89999999999999899999988876
Q ss_pred CeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------c
Q psy7952 255 PYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------V 324 (444)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~ 324 (444)
+. .+..+..++++.+.+...... .......+.+++.... .+.++||||++++.++.++..|... +
T Consensus 227 ~~-~~~~~~~r~nl~~~v~~~~~~---~~~~~~~l~~~l~~~~-~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l 301 (591)
T 2v1x_A 227 CF-TFTASFNRPNLYYEVRQKPSN---TEDFIEDIVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANL 301 (591)
T ss_dssp CE-EEECCCCCTTEEEEEEECCSS---HHHHHHHHHHHHTTTT-TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred cE-EEecCCCCcccEEEEEeCCCc---HHHHHHHHHHHHHHhc-cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 64 455667788988887765422 1223333444443322 5789999999999999999999876 8
Q ss_pred CHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHH
Q psy7952 325 NKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEY 404 (444)
Q Consensus 325 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 404 (444)
++.+|..+++.|++|+.+|||||+++++|||+|++++||++++|.|...|+||+||+||.|++|.|++++.+.|...+..
T Consensus 302 ~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~ 381 (591)
T 2v1x_A 302 EPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISS 381 (591)
T ss_dssp CHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhccchhHHHHHHHHhhHHHHHHHhh
Q psy7952 405 VIKTDTSTKREQLELKFKNYLSMLEYCE 432 (444)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (444)
++..+. .....+.+|+.||+
T Consensus 382 ~~~~~~--------~~~~~l~~~~~~~~ 401 (591)
T 2v1x_A 382 MVVMEN--------VGQQKLYEMVSYCQ 401 (591)
T ss_dssp HTTTST--------THHHHHHHHHHHHT
T ss_pred HHhhhh--------hhHHHHHHHHHHHh
Confidence 876432 13455677888876
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.2e-51 Score=412.75 Aligned_cols=357 Identities=33% Similarity=0.589 Sum_probs=300.6
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
..++.+.+++.||+..++ ++|.++++.+++| +++++.+|||+|||++ |++|+ +...+.. ||++
T Consensus 10 ~~~~~~~l~~~~g~~~~r-~~Q~~~i~~il~g-~d~lv~apTGsGKTl~--------~~lp~----l~~~g~~---lvi~ 72 (523)
T 1oyw_A 10 ESGAKQVLQETFGYQQFR-PGQEEIIDTVLSG-RDCLVVMPTGGGKSLC--------YQIPA----LLLNGLT---VVVS 72 (523)
T ss_dssp HHHHHHHHHHTTCCSSCC-TTHHHHHHHHHTT-CCEEEECSCHHHHHHH--------HHHHH----HHSSSEE---EEEC
T ss_pred CHHHHHHHHHHhCCCCCC-HHHHHHHHHHHcC-CCEEEECCCCcHHHHH--------HHHHH----HHhCCCE---EEEC
Confidence 677889999999999855 8999999999999 8999999999999999 88888 5555655 9999
Q ss_pred chhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhC
Q psy7952 113 PILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYN 191 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~ 191 (444)
|+++|+ .++++.+ ..+ +.+..++++............+. .+.++|+|+||+++.+..+... ....
T Consensus 73 P~~aL~-----~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~~~--~~~~~ilv~Tpe~l~~~~~~~~----l~~~ 138 (523)
T 1oyw_A 73 PLISLM-----KDQVDQLQANG---VAAACLNSTQTREQQLEVMTGCR--TGQIRLLYIAPERLMLDNFLEH----LAHW 138 (523)
T ss_dssp SCHHHH-----HHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHH--HTCCSEEEECHHHHTSTTHHHH----HTTS
T ss_pred ChHHHH-----HHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECHHHHhChHHHHH----HhhC
Confidence 999999 8888888 777 88999999888776666555554 3678999999999975543332 3347
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEE
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYD 271 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (444)
++++|||||+|++.+||++|++.+..+..+.+.+++ .+++++|||+++....++.+.+++..+. +...+..++++.+.
T Consensus 139 ~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~-~~~i~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~~r~~l~~~ 216 (523)
T 1oyw_A 139 NPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT-LPFMALTATADDTTRQDIVRLLGLNDPL-IQISSFDRPNIRYM 216 (523)
T ss_dssp CEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTT-SCEEEEESCCCHHHHHHHHHHHTCCSCE-EEECCCCCTTEEEE
T ss_pred CCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCC-CCEEEEeCCCCHHHHHHHHHHhCCCCCe-EEeCCCCCCceEEE
Confidence 899999999999999999999999988888777765 8999999999999888899988887774 44566778888877
Q ss_pred EEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCc
Q psy7952 272 VIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEI 341 (444)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~ 341 (444)
+.... .....+.+.+.. . .+.++||||+|+++++.+++.|... ++.++|..+++.|++|+.
T Consensus 217 v~~~~---~~~~~l~~~l~~----~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 287 (523)
T 1oyw_A 217 LMEKF---KPLDQLMRYVQE----Q--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDL 287 (523)
T ss_dssp EEECS---SHHHHHHHHHHH----T--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred EEeCC---CHHHHHHHHHHh----c--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 76542 233344444443 2 5679999999999999999999876 899999999999999999
Q ss_pred cEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHhhccchhHHHHHHHH
Q psy7952 342 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKF 421 (444)
Q Consensus 342 ~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (444)
+|||||+++++|||+|++++||++++|.|...|+||+||+||.|.+|.+++++++.+...++.++....+.. ......
T Consensus 288 ~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~~~~~--~~~~~~ 365 (523)
T 1oyw_A 288 QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQ--LQDIER 365 (523)
T ss_dssp SEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSCCSH--HHHHHH
T ss_pred eEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhccCcHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988743332 334456
Q ss_pred hhHHHHHHHhhh
Q psy7952 422 KNYLSMLEYCEQ 433 (444)
Q Consensus 422 ~~~~~~~~~~~~ 433 (444)
..+.+|..||+.
T Consensus 366 ~~l~~m~~~~~~ 377 (523)
T 1oyw_A 366 HKLNAMGAFAEA 377 (523)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 677888888763
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-48 Score=383.96 Aligned_cols=335 Identities=17% Similarity=0.239 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC-----Cccce
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG-----NVRSR 107 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~-----~~~~~ 107 (444)
...+.+++++ +||.. ||++|.++++.++.| +++++++|||+|||++ |++|+ +..+... ...++
T Consensus 64 ~~~l~~~l~~-~g~~~-pt~iQ~~ai~~i~~g-~d~i~~a~TGsGKT~a--------~~lpi-l~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 64 RDIIIDNVNK-SGYKI-PTPIQKCSIPVISSG-RDLMACAQTGSGKTAA--------FLLPI-LSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CHHHHHHHHH-TTCCS-CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHH--------HHHHH-HHHHHHSCCCCCTTCCS
T ss_pred CHHHHHHHHH-cCCCC-CCHHHHHHHHHHhcC-CCEEEECCCCCCchHH--------HHHHH-HHHHHhcccccccCCcc
Confidence 5677888887 59998 889999999999999 9999999999999999 67776 4333332 23467
Q ss_pred eEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL 187 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~ 187 (444)
+||++||++|+ .|+.+.++.+.. ...+++..++|+.........+ ..+++|+|+||+++. ..+....
T Consensus 132 ~lil~PtreLa--~Q~~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l------~~~~~Ivv~Tp~~l~----~~l~~~~ 198 (434)
T 2db3_A 132 VVIVSPTRELA--IQIFNEARKFAF-ESYLKIGIVYGGTSFRHQNECI------TRGCHVVIATPGRLL----DFVDRTF 198 (434)
T ss_dssp EEEECSSHHHH--HHHHHHHHHHTT-TSSCCCCEECTTSCHHHHHHHH------TTCCSEEEECHHHHH----HHHHTTS
T ss_pred EEEEecCHHHH--HHHHHHHHHHhc-cCCcEEEEEECCCCHHHHHHHh------hcCCCEEEEChHHHH----HHHHhCC
Confidence 89999999999 333444444421 1227888889988766543333 468999999999984 3333334
Q ss_pred HhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCC--CC
Q psy7952 188 VRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST--FR 265 (444)
Q Consensus 188 ~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~--~~ 265 (444)
..+.+++++|+||||++.+++ |...+..+..... .+.+.+++++|||+++...+....++ .++..+..... ..
T Consensus 199 ~~l~~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~-~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~ 273 (434)
T 2db3_A 199 ITFEDTRFVVLDEADRMLDMG--FSEDMRRIMTHVT-MRPEHQTLMFSATFPEEIQRMAGEFL--KNYVFVAIGIVGGAC 273 (434)
T ss_dssp CCCTTCCEEEEETHHHHTSTT--THHHHHHHHHCTT-SCSSCEEEEEESCCCHHHHHHHHTTC--SSCEEEEESSTTCCC
T ss_pred cccccCCeEEEccHhhhhccC--cHHHHHHHHHhcC-CCCCceEEEEeccCCHHHHHHHHHhc--cCCEEEEeccccccc
Confidence 457789999999999999887 7766666544322 24458999999999988766555443 35544443322 22
Q ss_pred CCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHH
Q psy7952 266 SNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQES 335 (444)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~ 335 (444)
.++...+.... ...+...+.+.+.. . ..++||||++++.++.+++.|.+. +++.+|..+++.
T Consensus 274 ~~i~~~~~~~~-~~~k~~~l~~~l~~----~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~ 345 (434)
T 2db3_A 274 SDVKQTIYEVN-KYAKRSKLIEILSE----Q---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRD 345 (434)
T ss_dssp TTEEEEEEECC-GGGHHHHHHHHHHH----C---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHH
T ss_pred cccceEEEEeC-cHHHHHHHHHHHHh----C---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Confidence 33333333322 23333444444433 2 345999999999999999999876 889999999999
Q ss_pred HhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEeccc-chhhHHHH
Q psy7952 336 FMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH-SKKSLEYV 405 (444)
Q Consensus 336 f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~ 405 (444)
|++|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.+++|+.++ +......+
T Consensus 346 F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l 416 (434)
T 2db3_A 346 FKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADL 416 (434)
T ss_dssp HHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHH
T ss_pred HHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999854 44444444
No 4
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1e-46 Score=370.27 Aligned_cols=336 Identities=15% Similarity=0.251 Sum_probs=252.6
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
..++.+++++ +|+.. |+++|.++++.++++ +++++.+|||+|||++ |.+|+ ++.+.......++||++
T Consensus 45 ~~~l~~~l~~-~g~~~-~~~~Q~~ai~~i~~~-~~~lv~a~TGsGKT~~--------~~~~~-~~~l~~~~~~~~~lil~ 112 (410)
T 2j0s_A 45 REDLLRGIYA-YGFEK-PSAIQQRAIKQIIKG-RDVIAQSQSGTGKTAT--------FSISV-LQCLDIQVRETQALILA 112 (410)
T ss_dssp CHHHHHHHHH-HTCCS-CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHH--------HHHHH-HHTCCTTSCSCCEEEEC
T ss_pred CHHHHHHHHH-cCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCCCchHH--------HHHHH-HHHHhhccCCceEEEEc
Confidence 4678888887 69998 679999999999999 9999999999999999 66555 33343333445789999
Q ss_pred chhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCC
Q psy7952 113 PILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNK 192 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~ 192 (444)
|+++|+ .|+.+.+..+. ....+.+..+.|+.........+ ..+++|+|+||+++. ..+........+
T Consensus 113 Pt~~L~--~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~------~~~~~ivv~Tp~~l~----~~l~~~~~~~~~ 179 (410)
T 2j0s_A 113 PTRELA--VQIQKGLLALG-DYMNVQCHACIGGTNVGEDIRKL------DYGQHVVAGTPGRVF----DMIRRRSLRTRA 179 (410)
T ss_dssp SSHHHH--HHHHHHHHHHT-TTTTCCEEEECTTSCHHHHHHHH------HHCCSEEEECHHHHH----HHHHTTSSCCTT
T ss_pred CcHHHH--HHHHHHHHHHh-ccCCeEEEEEECCCCHHHHHHHh------hcCCCEEEcCHHHHH----HHHHhCCccHhh
Confidence 999999 22233333441 11237888888888766544333 236799999999974 333333345677
Q ss_pred ccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecC--CCCCCceE
Q psy7952 193 LAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTS--TFRSNLFY 270 (444)
Q Consensus 193 ~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~ 270 (444)
+++||+||+|++.+++ +... +..++...+.+.+++++|||+++...+....+ +..+..+.... .....+..
T Consensus 180 ~~~vViDEah~~~~~~--~~~~---~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 252 (410)
T 2j0s_A 180 IKMLVLDEADEMLNKG--FKEQ---IYDVYRYLPPATQVVLISATLPHEILEMTNKF--MTDPIRILVKRDELTLEGIKQ 252 (410)
T ss_dssp CCEEEEETHHHHTSTT--THHH---HHHHHTTSCTTCEEEEEESCCCHHHHTTGGGT--CSSCEEECCCGGGCSCTTEEE
T ss_pred eeEEEEccHHHHHhhh--hHHH---HHHHHHhCccCceEEEEEcCCCHHHHHHHHHH--cCCCEEEEecCccccCCCceE
Confidence 9999999999998776 5543 44455566677899999999988655433333 33444433222 22334444
Q ss_pred EEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCC
Q psy7952 271 DVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGE 340 (444)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~ 340 (444)
.+........+...+.+.+... ..+++||||+++++++.+++.|... ++..+|..+++.|++|+
T Consensus 253 ~~~~~~~~~~k~~~l~~~~~~~------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (410)
T 2j0s_A 253 FFVAVEREEWKFDTLCDLYDTL------TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA 326 (410)
T ss_dssp EEEEESSTTHHHHHHHHHHHHH------TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS
T ss_pred EEEEeCcHHhHHHHHHHHHHhc------CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC
Confidence 4444433333444555544443 4569999999999999999999876 88999999999999999
Q ss_pred ccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHH
Q psy7952 341 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 406 (444)
Q Consensus 341 ~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 406 (444)
.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++++.+.+...++.+.
T Consensus 327 ~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~ 392 (410)
T 2j0s_A 327 SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 392 (410)
T ss_dssp SCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHH
T ss_pred CCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998877776654
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-46 Score=370.47 Aligned_cols=338 Identities=18% Similarity=0.259 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC---------
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN--------- 103 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~--------- 103 (444)
...+.++++. +|+.. ||++|.++++.++.+ +++++.+|||+|||++ |++|+ +..+...+
T Consensus 23 ~~~l~~~l~~-~~~~~-~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~--------~~~~~-l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 23 GEIIMGNIEL-TRYTR-PTPVQKHAIPIIKEK-RDLMACAQTGSGKTAA--------FLLPI-LSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CHHHHHHHHH-HTCCS-CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHH--------HHHHH-HHHHHHHCCCHHHHHHH
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHccC-CCEEEEcCCCCHHHHH--------HHHHH-HHHHHhccccchhhccc
Confidence 5678888887 59997 789999999999999 9999999999999999 66666 33232211
Q ss_pred ---------ccceeEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECC
Q psy7952 104 ---------VRSRNGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTP 172 (444)
Q Consensus 104 ---------~~~~vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 172 (444)
..+++||++|+++|+ .|+.+.+..+ ..+ +++..++|+.........+ ..+++|+|+||
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~--~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~------~~~~~I~v~Tp 159 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELA--VQIYEEARKFSYRSR---VRPCVVYGGADIGQQIRDL------ERGCHLLVATP 159 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHH--HHHHHHHHHHHTTSS---CCEEEECSSSCHHHHHHHH------TTCCSEEEECH
T ss_pred cccccccccCCccEEEECCcHHHH--HHHHHHHHHHhCcCC---ceEEEEECCCCHHHHHHHh------hCCCCEEEECh
Confidence 225789999999999 2234444444 234 8888899887765443322 46789999999
Q ss_pred CccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhC-CCCcEEEEeccCCcchHHHHHHHhc
Q psy7952 173 ERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTG-NSIPIIALTATAEPSVKQDIISVLK 251 (444)
Q Consensus 173 e~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~l~ 251 (444)
+++. ..+......+.++++||+||+|++.+++ +...+..+.......+ ...+++++|||+++........++.
T Consensus 160 ~~l~----~~l~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 233 (417)
T 2i4i_A 160 GRLV----DMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD 233 (417)
T ss_dssp HHHH----HHHHTTSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCS
T ss_pred HHHH----HHHHcCCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcC
Confidence 9984 2233333346788999999999998876 6666655543211111 2468999999998877666555543
Q ss_pred CCCCeEEEec--CCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------
Q psy7952 252 FNKPYKVFKT--STFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------ 323 (444)
Q Consensus 252 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------ 323 (444)
.+..+... ....+++...+..... ..+... +..++... ..++++||||+++++++.+++.|.+.
T Consensus 234 --~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~----l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ 305 (417)
T 2i4i_A 234 --EYIFLAVGRVGSTSENITQKVVWVEE-SDKRSF----LLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTS 305 (417)
T ss_dssp --SCEEEEEC----CCSSEEEEEEECCG-GGHHHH----HHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred --CCEEEEeCCCCCCccCceEEEEEecc-HhHHHH----HHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeE
Confidence 44333322 2234444444443322 223333 33333332 25789999999999999999999875
Q ss_pred ----cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 324 ----VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 324 ----~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
++.++|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.+++++++.+.
T Consensus 306 ~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (417)
T 2i4i_A 306 IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 385 (417)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGG
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHh
Q psy7952 400 KSLEYVIK 407 (444)
Q Consensus 400 ~~~~~~~~ 407 (444)
..+..+.+
T Consensus 386 ~~~~~l~~ 393 (417)
T 2i4i_A 386 NITKDLLD 393 (417)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 88777754
No 6
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8e-46 Score=378.85 Aligned_cols=350 Identities=19% Similarity=0.264 Sum_probs=258.9
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHH--ccCCcEEEEccCCCcccccccccccceEEeCCCccccccC----Ccc
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHIL--LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG----NVR 105 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~--~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~----~~~ 105 (444)
....+.++++. +|+.. |+++|.++++.++ .+ +++++.+|||+|||++ |++|+ +..+... +..
T Consensus 28 l~~~l~~~l~~-~g~~~-~~~~Q~~~i~~il~~~~-~dvlv~apTGsGKTl~--------~~lpi-l~~l~~~~~~~~~~ 95 (579)
T 3sqw_A 28 LDKEIHKAITR-MEFPG-LTPVQQKTIKPILSSED-HDVIARAKTGTGKTFA--------FLIPI-FQHLINTKFDSQYM 95 (579)
T ss_dssp SCHHHHHHHHT-TTCSS-CCHHHHHHHHHHHCSSS-EEEEEECCTTSCHHHH--------HHHHH-HHHHHHTTTSSTTS
T ss_pred CCHHHHHHHHH-CCCCC-CCHHHHHHHHHHHccCC-CeEEEEcCCCcHHHHH--------HHHHH-HHHHHhccccccCC
Confidence 46778888887 69998 6699999999999 55 8999999999999999 67776 3333332 223
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-c--CCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-T--GRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHY 182 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~ 182 (444)
+++||++||++|+ .|+.+.+..+ . .+...+.+..+.++.........+. ..+++|+|+||+++. ..
T Consensus 96 ~~~lvl~Ptr~La--~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-----~~~~~IlV~Tp~~l~----~~ 164 (579)
T 3sqw_A 96 VKAVIVAPTRDLA--LQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN-----KLRPNIVIATPGRLI----DV 164 (579)
T ss_dssp CCEEEECSSHHHH--HHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHH-----HHCCSEEEECHHHHH----HH
T ss_pred CeEEEEcchHHHH--HHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHh-----cCCCCEEEECHHHHH----HH
Confidence 5789999999999 3334455544 1 1333366777888776554433332 236899999999985 22
Q ss_pred HHHH-HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhC----CCCcEEEEeccCCcchHHHHHHHhcCCCCeE
Q psy7952 183 LLQH-LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTG----NSIPIIALTATAEPSVKQDIISVLKFNKPYK 257 (444)
Q Consensus 183 ~~~~-~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~ 257 (444)
+... ...+..+++||+||||++.+++ |+..+..+...+.... .+.+++++|||+++.....+...+..+....
T Consensus 165 l~~~~~~~~~~~~~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~ 242 (579)
T 3sqw_A 165 LEKYSNKFFRFVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLF 242 (579)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEE
T ss_pred HHhccccccccCCEEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEE
Confidence 2222 3457889999999999999988 8888888776665543 2578999999999877665554443222222
Q ss_pred EEecCC----CCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------
Q psy7952 258 VFKTST----FRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK---------- 323 (444)
Q Consensus 258 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~---------- 323 (444)
+..... ....+....................+...+... ..+.++||||+++..++.++..|...
T Consensus 243 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~ 321 (579)
T 3sqw_A 243 LDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEF 321 (579)
T ss_dssp EESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEE
T ss_pred EeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEe
Confidence 221111 122333333333332333333333344333321 25789999999999999999999864
Q ss_pred ---cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchh
Q psy7952 324 ---VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 400 (444)
Q Consensus 324 ---~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 400 (444)
+++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++++.+.+..
T Consensus 322 hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 322 HGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp STTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred cCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHh
Q psy7952 401 SLEYVIK 407 (444)
Q Consensus 401 ~~~~~~~ 407 (444)
.++.+.+
T Consensus 402 ~~~~l~~ 408 (579)
T 3sqw_A 402 FVRELED 408 (579)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888864
No 7
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.6e-45 Score=376.17 Aligned_cols=349 Identities=19% Similarity=0.280 Sum_probs=256.1
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHHcc-CCcEEEEccCCCcccccccccccceEEeCCCccccccCC----ccc
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLR-THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN----VRS 106 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~-~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~----~~~ 106 (444)
.+..+.+++++ +|+.. ++++|.++++.++.+ .+++++.+|||+|||++ |++|+ ++.+.... ..+
T Consensus 79 l~~~l~~~l~~-~g~~~-~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~--------~~lpi-l~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 79 LDKEIHKAITR-MEFPG-LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFA--------FLIPI-FQHLINTKFDSQYMV 147 (563)
T ss_dssp SCHHHHHHHHT-TCCSS-CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHH--------HHHHH-HHHHHHTTTSSTTSC
T ss_pred CCHHHHHHHHH-CCCCC-CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHH--------HHHHH-HHHHHhccccccCCe
Confidence 34566777876 59998 669999999999942 28999999999999999 67776 44343332 234
Q ss_pred eeEEEcchhhhhcccCccchHhhh---cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHH
Q psy7952 107 RNGWISPILSSFYLRFRDDKTSIV---TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYL 183 (444)
Q Consensus 107 ~vlil~P~~~L~~~~q~~~~~~~l---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~ 183 (444)
++||++||++|+ .|+.+.+..+ ..+.....+..+.++.........+. ..+++|+|+||+++. ..+
T Consensus 148 ~~lil~Ptr~La--~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~Iiv~Tp~~l~----~~l 216 (563)
T 3i5x_A 148 KAVIVAPTRDLA--LQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN-----KLRPNIVIATPGRLI----DVL 216 (563)
T ss_dssp CEEEECSSHHHH--HHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHH-----HHCCSEEEECHHHHH----HHH
T ss_pred eEEEEcCcHHHH--HHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHh-----cCCCCEEEECcHHHH----HHH
Confidence 789999999999 3334444443 12323366777888776554433322 236899999999985 222
Q ss_pred HHH-HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhC----CCCcEEEEeccCCcchHHHHHHHhcCCCCeEE
Q psy7952 184 LQH-LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTG----NSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258 (444)
Q Consensus 184 ~~~-~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~ 258 (444)
... ...+..+++||+||||++.+++ |++.+..+...+.... .+.|++++|||+++.....+...+. .+..+
T Consensus 217 ~~~~~~~~~~~~~lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~--~~~~~ 292 (563)
T 3i5x_A 217 EKYSNKFFRFVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN--KKECL 292 (563)
T ss_dssp HHHHHHHCTTCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCC--SSEEE
T ss_pred HhccccccccceEEEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcC--CCceE
Confidence 222 3456789999999999999888 8888888776665443 2578999999999877665544433 33222
Q ss_pred Eec--CC----CCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh---------
Q psy7952 259 FKT--ST----FRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--------- 323 (444)
Q Consensus 259 ~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~--------- 323 (444)
... .. ....+....................+...+... ..+.++||||++++.++.++..|...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~ 371 (563)
T 3i5x_A 293 FLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILE 371 (563)
T ss_dssp EEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred EEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEE
Confidence 221 11 122233333333332333333333343333322 25789999999999999999999864
Q ss_pred ----cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 324 ----VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 324 ----~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
+++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.+++++.+.+.
T Consensus 372 ~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 372 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp ESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred ecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHh
Q psy7952 400 KSLEYVIK 407 (444)
Q Consensus 400 ~~~~~~~~ 407 (444)
..++.+.+
T Consensus 452 ~~~~~l~~ 459 (563)
T 3i5x_A 452 PFVRELED 459 (563)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888864
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.1e-46 Score=361.87 Aligned_cols=332 Identities=16% Similarity=0.216 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
...+.+++++ +|+.. |+++|.++++.++.+ +++++.+|||+|||++ +.+++ +..+.......++||++
T Consensus 16 ~~~l~~~l~~-~g~~~-~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~--------~~~~~-~~~l~~~~~~~~~lil~ 83 (391)
T 1xti_A 16 KPELLRAIVD-CGFEH-PSEVQHECIPQAILG-MDVLCQAKSGMGKTAV--------FVLAT-LQQLEPVTGQVSVLVMC 83 (391)
T ss_dssp CHHHHHHHHH-HSCCS-CCHHHHHHHHHHTTT-CCEEEECSSCSSHHHH--------HHHHH-HHHCCCCTTCCCEEEEC
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhcC-CcEEEECCCCCcHHHH--------HHHHH-HHhhcccCCCeeEEEEC
Confidence 4678888887 59997 669999999999999 9999999999999999 55555 33333333445779999
Q ss_pred chhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCC
Q psy7952 113 PILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNK 192 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~ 192 (444)
|+++|+ .|+.+.+..+....+.+++..++|+.........+. .+.++|+|+||+++. ..+......+.+
T Consensus 84 P~~~L~--~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~iiv~T~~~l~----~~~~~~~~~~~~ 152 (391)
T 1xti_A 84 HTRELA--FQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK-----KNCPHIVVGTPGRIL----ALARNKSLNLKH 152 (391)
T ss_dssp SCHHHH--HHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH-----HSCCSEEEECHHHHH----HHHHTTSSCCTT
T ss_pred CCHHHH--HHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh-----cCCCCEEEECHHHHH----HHHHcCCccccc
Confidence 999999 333444444422222488999999887665544432 245799999999975 222233344678
Q ss_pred ccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCC---CCCce
Q psy7952 193 LAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF---RSNLF 269 (444)
Q Consensus 193 ~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~ 269 (444)
+++||+||||++.++. .+. ..+..++...+...+++++|||+++.....+..++. .+..+...... ...+.
T Consensus 153 ~~~vViDEaH~~~~~~-~~~---~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 226 (391)
T 1xti_A 153 IKHFILDECDKMLEQL-DMR---RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ--DPMEIFVDDETKLTLHGLQ 226 (391)
T ss_dssp CSEEEECSHHHHTSSH-HHH---HHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCS--SCEEEECCCCCCCCCTTCE
T ss_pred cCEEEEeCHHHHhhcc-chH---HHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcC--CCeEEEecCccccCcccce
Confidence 9999999999987631 133 334455556666789999999999987776666653 44444433222 12233
Q ss_pred EEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcC
Q psy7952 270 YDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRG 339 (444)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g 339 (444)
..+.... ...+...+.+++.. . .++++||||+++++++.+++.|... ++..+|..+++.|++|
T Consensus 227 ~~~~~~~-~~~~~~~l~~~l~~----~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 299 (391)
T 1xti_A 227 QYYVKLK-DNEKNRKLFDLLDV----L--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 299 (391)
T ss_dssp EEEEECC-GGGHHHHHHHHHHH----S--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred EEEEEcC-chhHHHHHHHHHHh----c--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Confidence 2222222 23333344444433 2 5789999999999999999999876 7899999999999999
Q ss_pred CccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchh
Q psy7952 340 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 400 (444)
Q Consensus 340 ~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 400 (444)
+.+|||||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.+++++++.+..
T Consensus 300 ~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 360 (391)
T 1xti_A 300 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 360 (391)
T ss_dssp CCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHH
T ss_pred CCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchH
Confidence 9999999999999999999999999999999999999999999999999999999876543
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2e-46 Score=368.55 Aligned_cols=336 Identities=17% Similarity=0.212 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
...+.+.+++ +|+.. |+++|.++++.++.| +++++.+|||+|||++ |.+++ ++.+.......+++|++
T Consensus 48 ~~~~~~~l~~-~~~~~-~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~--------~~~~~-~~~~~~~~~~~~~lil~ 115 (414)
T 3eiq_A 48 SESLLRGIYA-YGFEK-PSAIQQRAILPCIKG-YDVIAQAQSGTGKTAT--------FAISI-LQQIELDLKATQALVLA 115 (414)
T ss_dssp CHHHHHHHHH-TTCCS-CCHHHHHHHHHHHTT-CCEEECCCSCSSSHHH--------HHHHH-HHHCCTTSCSCCEEEEC
T ss_pred CHHHHHHHHH-cCCCC-CCHHHHHHhHHHhCC-CCEEEECCCCCcccHH--------HHHHH-HHHHhhcCCceeEEEEe
Confidence 5567788887 69998 679999999999999 8999999999999999 55555 33344333455779999
Q ss_pred chhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh
Q psy7952 113 PILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY 190 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~ 190 (444)
|+++|+ .|+.+.+..+ ..+ ..+....++.......... ....++|+|+||+++. ..+.......
T Consensus 116 P~~~L~--~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~iiv~T~~~l~----~~l~~~~~~~ 181 (414)
T 3eiq_A 116 PTRELA--QQIQKVVMALGDYMG---ASCHACIGGTNVRAEVQKL-----QMEAPHIIVGTPGRVF----DMLNRRYLSP 181 (414)
T ss_dssp SSHHHH--HHHHHHHHHHGGGSC---CCEEECCCCTTHHHHHHHH-----TTTCCSEEEECHHHHH----HHHHHTSSCS
T ss_pred ChHHHH--HHHHHHHHHHhcccC---ceEEEEECCcchHHHHHHH-----hcCCCCEEEECHHHHH----HHHHcCCccc
Confidence 999999 3334444444 234 7777777777654433222 1367899999999985 4444444456
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecC--CCCCCc
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTS--TFRSNL 268 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~ 268 (444)
.++++||+||+|++.+++ +. ..+..++...+.+.+++++|||+++........++ .++..+.... .....+
T Consensus 182 ~~~~~vViDEah~~~~~~--~~---~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 254 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRG--FK---DQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFM--RDPIRILVKKEELTLEGI 254 (414)
T ss_dssp TTCCEEEECSHHHHHHTT--TH---HHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTC--SSCEEECCCCCCCCTTSC
T ss_pred ccCcEEEEECHHHhhccC--cH---HHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHc--CCCEEEEecCCccCCCCc
Confidence 779999999999987766 44 33445555666779999999999887766554443 3443333222 222333
Q ss_pred eEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhc
Q psy7952 269 FYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMR 338 (444)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~ 338 (444)
............+...+ ..++... ..+++||||+++++++.+++.|... ++..+|..+++.|++
T Consensus 255 ~~~~~~~~~~~~~~~~l----~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 328 (414)
T 3eiq_A 255 RQFYINVEREEWKLDTL----CDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 328 (414)
T ss_dssp CEEEEECSSSTTHHHHH----HHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC
T ss_pred eEEEEEeChHHhHHHHH----HHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 33344433333333333 3333333 4679999999999999999999876 778999999999999
Q ss_pred CCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 339 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 339 g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
|+.+|||||+++++|+|+|++++||+++.|.|...|+||+||+||.|+.|.+++++++.+...++.+.+
T Consensus 329 g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 397 (414)
T 3eiq_A 329 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 397 (414)
T ss_dssp C---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHH
T ss_pred CCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988877776643
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.3e-45 Score=356.83 Aligned_cols=336 Identities=17% Similarity=0.249 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
...+.+++.+ +|+.. |+++|.++++.++++ +++++.+|||+|||++ +.+|+ +..+.......+++|++
T Consensus 29 ~~~l~~~l~~-~g~~~-~~~~Q~~~i~~i~~~-~~~li~a~TGsGKT~~--------~~~~~-~~~~~~~~~~~~~lil~ 96 (400)
T 1s2m_A 29 KRELLMGIFE-AGFEK-PSPIQEEAIPVAITG-RDILARAKNGTGKTAA--------FVIPT-LEKVKPKLNKIQALIMV 96 (400)
T ss_dssp CHHHHHHHHH-TTCCS-CCHHHHHHHHHHHHT-CCEEEECCTTSCHHHH--------HHHHH-HHHCCTTSCSCCEEEEC
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhcC-CCEEEECCCCcHHHHH--------HHHHH-HHHHhhccCCccEEEEc
Confidence 5677788887 59997 669999999999999 8999999999999999 55555 33333333445779999
Q ss_pred chhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCC
Q psy7952 113 PILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNK 192 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~ 192 (444)
|+++|+ .|+.+.+..+. ....+.+..+.|+........ .....++|+|+||+++. ..+......+.+
T Consensus 97 P~~~L~--~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~------~~~~~~~Ivv~T~~~l~----~~~~~~~~~~~~ 163 (400)
T 1s2m_A 97 PTRELA--LQTSQVVRTLG-KHCGISCMVTTGGTNLRDDIL------RLNETVHILVGTPGRVL----DLASRKVADLSD 163 (400)
T ss_dssp SSHHHH--HHHHHHHHHHT-TTTTCCEEEECSSSCHHHHHH------HTTSCCSEEEECHHHHH----HHHHTTCSCCTT
T ss_pred CCHHHH--HHHHHHHHHHh-cccCceEEEEeCCcchHHHHH------HhcCCCCEEEEchHHHH----HHHHhCCccccc
Confidence 999999 22233333331 111278888888876543322 23467899999999974 223333345678
Q ss_pred ccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecC-CCCCCceEE
Q psy7952 193 LAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTS-TFRSNLFYD 271 (444)
Q Consensus 193 ~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ 271 (444)
+++||+||+|++.+.+ +.. .+..+...++...+++++|||++....+.+...+. .+..+.... ....++...
T Consensus 164 ~~~vIiDEaH~~~~~~--~~~---~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 236 (400)
T 1s2m_A 164 CSLFIMDEADKMLSRD--FKT---IIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH--KPYEINLMEELTLKGITQY 236 (400)
T ss_dssp CCEEEEESHHHHSSHH--HHH---HHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS--SCEEESCCSSCBCTTEEEE
T ss_pred CCEEEEeCchHhhhhc--hHH---HHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcC--CCeEEEeccccccCCceeE
Confidence 9999999999986543 443 34445556666789999999999887777666553 443332222 222333333
Q ss_pred EEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCc
Q psy7952 272 VIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEI 341 (444)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~ 341 (444)
..... ...+...+..++ ... ..+++||||+++++++.+++.|... ++..+|..+++.|++|+.
T Consensus 237 ~~~~~-~~~k~~~l~~~~----~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 309 (400)
T 1s2m_A 237 YAFVE-ERQKLHCLNTLF----SKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKV 309 (400)
T ss_dssp EEECC-GGGHHHHHHHHH----HHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred EEEec-hhhHHHHHHHHH----hhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCC
Confidence 33222 222333333333 322 4679999999999999999999875 789999999999999999
Q ss_pred cEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 342 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 342 ~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
+|||||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.+++++++.+...+..+.+
T Consensus 310 ~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~ 375 (400)
T 1s2m_A 310 RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 375 (400)
T ss_dssp SEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred cEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888777754
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.2e-45 Score=359.73 Aligned_cols=336 Identities=17% Similarity=0.220 Sum_probs=245.6
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHHcc-CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEE
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLR-THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGW 110 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~-~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vli 110 (444)
....+.+++++ +|+.. |+++|.++++.++.+ ++++++.+|||+|||++ |.+|+ +..+...+..++++|
T Consensus 32 l~~~l~~~l~~-~g~~~-~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~--------~~~~~-~~~~~~~~~~~~~li 100 (412)
T 3fht_A 32 LKPQLLQGVYA-MGFNR-PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA--------FVLAM-LSQVEPANKYPQCLC 100 (412)
T ss_dssp CCHHHHHHHHH-TTCCS-CCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHH--------HHHHH-HHHCCTTSCSCCEEE
T ss_pred CCHHHHHHHHH-cCCCC-CCHHHHHHHHHHhcCCCCeEEEECCCCchHHHH--------HHHHH-HHHhhhcCCCCCEEE
Confidence 35667788887 69998 779999999999986 48999999999999999 55555 444554555567899
Q ss_pred EcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH-HHHh
Q psy7952 111 ISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ-HLVR 189 (444)
Q Consensus 111 l~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~-~~~~ 189 (444)
++|+++|+ .|+.+.++.+....+.+.+....++...... ....++|+|+||+++. ..+.. ....
T Consensus 101 l~P~~~L~--~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ivv~T~~~l~----~~~~~~~~~~ 165 (412)
T 3fht_A 101 LSPTYELA--LQTGKVIEQMGKFYPELKLAYAVRGNKLERG---------QKISEQIVIGTPGTVL----DWCSKLKFID 165 (412)
T ss_dssp ECSSHHHH--HHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---------CCCCCSEEEECHHHHH----HHHTTSCSSC
T ss_pred ECCCHHHH--HHHHHHHHHHHhhcccceEEEeecCcchhhh---------hcCCCCEEEECchHHH----HHHHhcCCcC
Confidence 99999999 2223334444222233777777776554321 1346799999999974 21111 2234
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEe--cCCCCCC
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK--TSTFRSN 267 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~ 267 (444)
+.++++||+||+|++.+... +...+. .+....+.+.+++++|||+++.........+. .+..+.. .......
T Consensus 166 ~~~~~~iViDEah~~~~~~~-~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 239 (412)
T 3fht_A 166 PKKIKVFVLDEADVMIATQG-HQDQSI---RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP--DPNVIKLKREEETLDT 239 (412)
T ss_dssp GGGCCEEEEETHHHHHSTTT-THHHHH---HHHHTSCTTCEEEEEESCCCHHHHHHHHHHSS--SCEEECCCGGGSSCTT
T ss_pred hhhCcEEEEeCHHHHhhcCC-cHHHHH---HHHhhCCCCceEEEEEeecCHHHHHHHHHhcC--CCeEEeeccccccccC
Confidence 56899999999999876321 443333 44455667789999999999987776666543 3333322 2223344
Q ss_pred ceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHh
Q psy7952 268 LFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFM 337 (444)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~ 337 (444)
+................+...+... .++++||||+++++++.++..|... ++..+|..+++.|+
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 313 (412)
T 3fht_A 240 IKQYYVLCSSRDEKFQALCNLYGAI------TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 313 (412)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHH------SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCChHHHHHHHHHHHhhc------CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHH
Confidence 4444444443344444444444432 4679999999999999999999876 88999999999999
Q ss_pred cCCccEEEEcCccccccccCCccEEEEeCCC------CCHHHHHHHhccCCCCCCceeEEEEecccc-hhhHHHH
Q psy7952 338 RGEINVITATISFGMGIDRQNVRFVVHWGMP------SSIPAYYQESGRAGRDGLQSYCRIYHSEHS-KKSLEYV 405 (444)
Q Consensus 338 ~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~~ 405 (444)
+|+.+|||||+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++++++.+ ...++.+
T Consensus 314 ~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i 388 (412)
T 3fht_A 314 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRI 388 (412)
T ss_dssp TTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHH
T ss_pred CCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHH
Confidence 9999999999999999999999999999999 578999999999999999999999998765 4444443
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.1e-44 Score=353.70 Aligned_cols=335 Identities=16% Similarity=0.248 Sum_probs=243.9
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccC-CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRT-HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~-~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
...+.+++++ +|+.. |+++|.++++.++.+. +++++.+|||+|||++ +.+++ +..+...+..+++||+
T Consensus 13 ~~~l~~~l~~-~~~~~-~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~--------~~~~~-~~~~~~~~~~~~~lil 81 (395)
T 3pey_A 13 APELLKGIYA-MKFQK-PSKIQERALPLLLHNPPRNMIAQSQSGTGKTAA--------FSLTM-LTRVNPEDASPQAICL 81 (395)
T ss_dssp CHHHHHHHHH-TTCCS-CCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHH--------HHHHH-HHHCCTTCCSCCEEEE
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHH--------HHHHH-HHHhccCCCCccEEEE
Confidence 5677888887 59998 7799999999999874 7899999999999999 55555 3334444455678999
Q ss_pred cchhhhhcccCccchHhhh-c-CCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh
Q psy7952 112 SPILSSFYLRFRDDKTSIV-T-GRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR 189 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~ 189 (444)
+|+++|+ .|+.+.+ . .....+.+....++...... ..+++|+|+||+++. ..+......
T Consensus 82 ~P~~~L~-----~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~iiv~T~~~l~----~~~~~~~~~ 142 (395)
T 3pey_A 82 APSRELA-----RQTLEVVQEMGKFTKITSQLIVPDSFEKNK----------QINAQVIVGTPGTVL----DLMRRKLMQ 142 (395)
T ss_dssp CSSHHHH-----HHHHHHHHHHTTTSCCCEEEESTTSSCTTS----------CBCCSEEEECHHHHH----HHHHTTCBC
T ss_pred CCCHHHH-----HHHHHHHHHHhcccCeeEEEEecCchhhhc----------cCCCCEEEEcHHHHH----HHHHcCCcc
Confidence 9999999 4444444 1 11222667777766543221 346899999999974 333333445
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCce
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 269 (444)
+.++++||+||||++.+... +...+ ..+....+.+.+++++|||+++.........+.................+.
T Consensus 143 ~~~~~~iIiDEah~~~~~~~-~~~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (395)
T 3pey_A 143 LQKIKIFVLDEADNMLDQQG-LGDQC---IRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIK 218 (395)
T ss_dssp CTTCCEEEEETHHHHHHSTT-HHHHH---HHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEE
T ss_pred cccCCEEEEEChhhhcCccc-cHHHH---HHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccccccccc
Confidence 67899999999999876321 44433 344555666789999999999877766655543222222222222233333
Q ss_pred EEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcC
Q psy7952 270 YDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRG 339 (444)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g 339 (444)
........... ....+..++... .++++||||+++++++.+++.|... ++..+|..+++.|++|
T Consensus 219 ~~~~~~~~~~~----~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 292 (395)
T 3pey_A 219 QLYMDCKNEAD----KFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG 292 (395)
T ss_dssp EEEEECSSHHH----HHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT
T ss_pred EEEEEcCchHH----HHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC
Confidence 33333322222 233444444433 5689999999999999999999876 8899999999999999
Q ss_pred CccEEEEcCccccccccCCccEEEEeCCCC------CHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 340 EINVITATISFGMGIDRQNVRFVVHWGMPS------SIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 340 ~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
+.+|||||+++++|+|+|++++||++++|. |...|+||+||+||.|+.|.+++++.+.+...+...++
T Consensus 293 ~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~ 366 (395)
T 3pey_A 293 RSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQ 366 (395)
T ss_dssp SCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHH
T ss_pred CCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHH
Confidence 999999999999999999999999999998 99999999999999999999999998765544433333
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-43 Score=343.17 Aligned_cols=330 Identities=18% Similarity=0.287 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
...+.+++++ +|+.. |+++|.++++.++++++++++.+|||+|||++ +.+++ +..+. .+...+++|++
T Consensus 14 ~~~~~~~l~~-~g~~~-~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~--------~~~~~-~~~~~-~~~~~~~lil~ 81 (367)
T 1hv8_A 14 SDNILNAIRN-KGFEK-PTDIQMKVIPLFLNDEYNIVAQARTGSGKTAS--------FAIPL-IELVN-ENNGIEAIILT 81 (367)
T ss_dssp CHHHHHHHHH-HTCCS-CCHHHHHHHHHHHHTCSEEEEECCSSSSHHHH--------HHHHH-HHHSC-SSSSCCEEEEC
T ss_pred CHHHHHHHHH-cCCCC-CCHHHHHHHHHHhCCCCCEEEECCCCChHHHH--------HHHHH-HHHhc-ccCCCcEEEEc
Confidence 5677888887 59987 66999999999998867999999999999999 44444 22222 22345779999
Q ss_pred chhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh
Q psy7952 113 PILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY 190 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~ 190 (444)
|+++|+ .+..+.+ ..+...+.+..+.|+.......... .+++|+|+||+++. ..+......+
T Consensus 82 P~~~L~-----~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~iiv~T~~~l~----~~~~~~~~~~ 145 (367)
T 1hv8_A 82 PTRELA-----IQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-------KNANIVVGTPGRIL----DHINRGTLNL 145 (367)
T ss_dssp SCHHHH-----HHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH-------HTCSEEEECHHHHH----HHHHTTCSCT
T ss_pred CCHHHH-----HHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc-------CCCCEEEecHHHHH----HHHHcCCccc
Confidence 999999 4444444 1122237888888887765443333 26799999999974 3333333446
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceE
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFY 270 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 270 (444)
.++++||+||+|++.+++ +.. .+..++...+.+.+++++|||+++...+.+..+++ ....+. .....++..
T Consensus 146 ~~~~~iIiDEah~~~~~~--~~~---~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~ 216 (367)
T 1hv8_A 146 KNVKYFILDEADEMLNMG--FIK---DVEKILNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIK--AKINANIEQ 216 (367)
T ss_dssp TSCCEEEEETHHHHHTTT--THH---HHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEE--CCSSSSSEE
T ss_pred ccCCEEEEeCchHhhhhc--hHH---HHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEE--ecCCCCceE
Confidence 789999999999997766 443 34445556666789999999999887776666543 222222 222233333
Q ss_pred EEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCC
Q psy7952 271 DVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGE 340 (444)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~ 340 (444)
...... ...+. ..+...+. ..+.++||||+++++++.+++.|.+. ++..+|..+++.|++|+
T Consensus 217 ~~~~~~-~~~~~----~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 288 (367)
T 1hv8_A 217 SYVEVN-ENERF----EALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK 288 (367)
T ss_dssp EEEECC-GGGHH----HHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS
T ss_pred EEEEeC-hHHHH----HHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC
Confidence 333222 12222 33333333 25789999999999999999999875 78999999999999999
Q ss_pred ccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 341 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 341 ~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
.+|||||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.+++++++.+...+..+.+
T Consensus 289 ~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 355 (367)
T 1hv8_A 289 IRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIER 355 (367)
T ss_dssp SSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHH
T ss_pred CeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888777754
No 14
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.3e-46 Score=364.51 Aligned_cols=337 Identities=17% Similarity=0.263 Sum_probs=139.7
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
.+..+.+++.. +|+.. |+++|.++++.++.+ +++++.+|||+|||++ |.+|+ +..+......+++||+
T Consensus 28 l~~~l~~~l~~-~g~~~-~~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~--------~~~~~-~~~l~~~~~~~~~lil 95 (394)
T 1fuu_A 28 LDENLLRGVFG-YGFEE-PSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGT--------FSIAA-LQRIDTSVKAPQALML 95 (394)
T ss_dssp CCHHHHHHHHH-HTCCS-CCHHHHHHHHHHHHT-CCEEECCCSSHHHHHH--------HHHHH-HHHCCTTCCSCCEEEE
T ss_pred CCHHHHHHHHH-cCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCChHHHH--------HHHHH-HHHhhccCCCCCEEEE
Confidence 35678888887 69987 669999999999999 9999999999999999 55555 3334444445678999
Q ss_pred cchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhC
Q psy7952 112 SPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYN 191 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~ 191 (444)
+|+++|+ .|+.+.+..+. ....+.+..++|+.........+. +++|+|+||+++. ..+........
T Consensus 96 ~P~~~L~--~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~-------~~~i~v~T~~~l~----~~~~~~~~~~~ 161 (394)
T 1fuu_A 96 APTRELA--LQIQKVVMALA-FHMDIKVHACIGGTSFVEDAEGLR-------DAQIVVGTPGRVF----DNIQRRRFRTD 161 (394)
T ss_dssp CSSHHHH--HHHHHHHHHHT-TTSCCCEEEECSSCCHHHHHHHHH-------HCSEEEECHHHHH----HHHHTTSSCCT
T ss_pred cCCHHHH--HHHHHHHHHHh-ccCCeeEEEEeCCCchHHHHhhcC-------CCCEEEECHHHHH----HHHHhCCcchh
Confidence 9999999 22233333331 112388888998887655443332 5789999999974 33333334456
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCC--CCCCce
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST--FRSNLF 269 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~ 269 (444)
++++||+||+|++.+++ +...+. .+....+...+++++|||+++...+....++. .+..+..... ..+.+.
T Consensus 162 ~~~~vIiDEah~~~~~~--~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 234 (394)
T 1fuu_A 162 KIKMFILDEADEMLSSG--FKEQIY---QIFTLLPPTTQVVLLSATMPNDVLEVTTKFMR--NPVRILVKKDELTLEGIK 234 (394)
T ss_dssp TCCEEEEETHHHHHHTT--CHHHHH---HHHHHSCTTCEEEEECSSCCHHHHHHHHHHCC--SCEEEEECC---------
T ss_pred hCcEEEEEChHHhhCCC--cHHHHH---HHHHhCCCCceEEEEEEecCHHHHHHHHHhcC--CCeEEEecCccccCCCce
Confidence 89999999999987766 554444 44455666789999999999877766665543 4443333221 112222
Q ss_pred EEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcC
Q psy7952 270 YDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRG 339 (444)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g 339 (444)
............ ...+..++... ..+++||||+++++++.+++.|... ++..+|..+++.|++|
T Consensus 235 ~~~~~~~~~~~~----~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 308 (394)
T 1fuu_A 235 QFYVNVEEEEYK----YECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 308 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCchhhH----HHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC
Confidence 111111111112 22233333222 4679999999999999999999765 7789999999999999
Q ss_pred CccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 340 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 340 ~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
+.+|||||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.+++++++.+...+..+.+
T Consensus 309 ~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 309 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777666643
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.1e-44 Score=341.52 Aligned_cols=321 Identities=17% Similarity=0.229 Sum_probs=240.6
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcc
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISP 113 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P 113 (444)
+.+.+++++ +|+.. ++++|.++++.++++ +++++.+|||+|||++ +.+++ +..+ .+++|++|
T Consensus 3 ~~i~~~l~~-~g~~~-l~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~--------~~~~~----~~~~---~~~liv~P 64 (337)
T 2z0m_A 3 EKIEQAIRE-MGFKN-FTEVQSKTIPLMLQG-KNVVVRAKTGSGKTAA--------YAIPI----LELG---MKSLVVTP 64 (337)
T ss_dssp HHHHHHHHH-TTCCS-CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHH--------HHHHH----HHHT---CCEEEECS
T ss_pred HHHHHHHHH-cCCCC-CCHHHHHHHHHHhcC-CCEEEEcCCCCcHHHH--------HHHHH----Hhhc---CCEEEEeC
Confidence 567888887 69998 569999999999999 8999999999999999 66666 3333 34599999
Q ss_pred hhhhhcccCccchHhhh-cC-CCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhC
Q psy7952 114 ILSSFYLRFRDDKTSIV-TG-RSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYN 191 (444)
Q Consensus 114 ~~~L~~~~q~~~~~~~l-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~ 191 (444)
+++|+ .|+.+.+ .. ....+.+..++|+.......... ..++|+|+||+++. ..+......+.
T Consensus 65 ~~~L~-----~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~v~T~~~l~----~~~~~~~~~~~ 128 (337)
T 2z0m_A 65 TRELT-----RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-------RNADIVVATPGRLL----DLWSKGVIDLS 128 (337)
T ss_dssp SHHHH-----HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH-------TTCSEEEECHHHHH----HHHHTTSCCGG
T ss_pred CHHHH-----HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc-------CCCCEEEECHHHHH----HHHHcCCcchh
Confidence 99999 4554444 11 12237888888887765443322 35899999999974 22222333467
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEE
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYD 271 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (444)
++++||+||+|++.+++ +... +..++...+...+++++|||+++...+.+..++. .+..+ ......+++...
T Consensus 129 ~~~~iViDEah~~~~~~--~~~~---~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~ 200 (337)
T 2z0m_A 129 SFEIVIIDEADLMFEMG--FIDD---IKIILAQTSNRKITGLFSATIPEEIRKVVKDFIT--NYEEI-EACIGLANVEHK 200 (337)
T ss_dssp GCSEEEEESHHHHHHTT--CHHH---HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSC--SCEEE-ECSGGGGGEEEE
T ss_pred hCcEEEEEChHHhhccc--cHHH---HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcC--Cceee-ecccccCCceEE
Confidence 88999999999998776 4433 3444555666688899999999987777766653 33222 222333344443
Q ss_pred EEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------cCHHHHHHHHHHHhcCCccEEE
Q psy7952 272 VIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------VNKHERSRVQESFMRGEINVIT 345 (444)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------~~~~~r~~~~~~f~~g~~~vLv 345 (444)
....... ....... +.. ..++++||||+++++++.+++.|... ++..+|..+++.|++|+.++||
T Consensus 201 ~~~~~~~---~~~~~~~----~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 271 (337)
T 2z0m_A 201 FVHVKDD---WRSKVQA----LRE--NKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLI 271 (337)
T ss_dssp EEECSSS---SHHHHHH----HHT--CCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred EEEeChH---HHHHHHH----HHh--CCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 3333221 1111122 222 25789999999999999999988754 8899999999999999999999
Q ss_pred EcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHH
Q psy7952 346 ATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 406 (444)
Q Consensus 346 aT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 406 (444)
||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.+++++. .+...++.+.
T Consensus 272 ~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~ 331 (337)
T 2z0m_A 272 TTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVK 331 (337)
T ss_dssp ECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC
T ss_pred EcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 6665555553
No 16
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.4e-45 Score=366.40 Aligned_cols=329 Identities=17% Similarity=0.217 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHcc-CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLR-THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~-~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
...+.+++.+ +|+.. |+++|.++++.++.+ .+++++++|||+|||++ |.+|+ +..+...+..+++||+
T Consensus 100 ~~~l~~~l~~-~g~~~-p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~--------~~l~i-l~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 100 KPQLLQGVYA-MGFNR-PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA--------FVLAM-LSQVEPANKYPQCLCL 168 (479)
T ss_dssp CHHHHHHHHH-TTCCS-CCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHH--------HHHHH-HTTCCTTSCSCCEEEE
T ss_pred CHHHHHHHHH-cCCCC-CCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHH--------HHHHH-HHHHhhcCCCCcEEEE
Confidence 5667788887 69998 789999999999986 48999999999999999 66666 4445555555678999
Q ss_pred cchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH--HHh
Q psy7952 112 SPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH--LVR 189 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~--~~~ 189 (444)
+|+++|+ .|+.+.++.+......+.+....++...... .....+|+|+||+++. . .+.. ...
T Consensus 169 ~Pt~~La--~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Ivv~Tp~~l~----~-~l~~~~~~~ 232 (479)
T 3fmp_B 169 SPTYELA--LQTGKVIEQMGKFYPELKLAYAVRGNKLERG---------QKISEQIVIGTPGTVL----D-WCSKLKFID 232 (479)
T ss_dssp CSSHHHH--HHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---------CCCCCSEEEECHHHHH----H-HHTTSCCCC
T ss_pred eChHHHH--HHHHHHHHHHHhhCCCceEEEEeCCcccccc---------ccCCCCEEEECchHHH----H-HHHhcCCcC
Confidence 9999999 2234445555222223666666665543211 1245789999999974 1 2212 334
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCC--CCCC
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST--FRSN 267 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~ 267 (444)
+.++++||+||+|++.+... +... +..+....+.+.+++++|||++..........+ +.+..+..... ....
T Consensus 233 ~~~~~~iViDEah~~~~~~~-~~~~---~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 306 (479)
T 3fmp_B 233 PKKIKVFVLDEADVMIATQG-HQDQ---SIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLDT 306 (479)
T ss_dssp GGGCCEEEECCHHHHHTSTT-HHHH---HHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHS--SSEEEEEEC--------
T ss_pred cccCCEEEEECHHHHhhcCC-cHHH---HHHHHhhCCccceEEEEeCCCCHHHHHHHHHHc--CCCeEEeccccccCcCC
Confidence 57899999999999875321 4433 334555667779999999999988776655543 44433332221 1112
Q ss_pred ceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHh
Q psy7952 268 LFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFM 337 (444)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~ 337 (444)
+...+.......... ..+..++... ...++||||++++.++.++..|... ++..+|..+++.|+
T Consensus 307 ~~~~~~~~~~~~~~~----~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~ 380 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKF----QALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 380 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHH----HHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHH
Confidence 221222211111222 2222222222 4678999999999999999999765 78899999999999
Q ss_pred cCCccEEEEcCccccccccCCccEEEEeCCC------CCHHHHHHHhccCCCCCCceeEEEEecccchh
Q psy7952 338 RGEINVITATISFGMGIDRQNVRFVVHWGMP------SSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 400 (444)
Q Consensus 338 ~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 400 (444)
+|+.+|||||+++++|+|+|++++||++|+| .+...|+||+||+||.|+.|.+++++++.+..
T Consensus 381 ~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~ 449 (479)
T 3fmp_B 381 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM 449 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchH
Confidence 9999999999999999999999999999999 46789999999999999999999999876533
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.5e-43 Score=344.64 Aligned_cols=316 Identities=16% Similarity=0.238 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
-+++.+.+++.+|++ |+++|.++++.++++ +++++.+|||+|||++ |++++ +... ...++++|++
T Consensus 7 ~~~~~~~l~~~~~~~--~~~~Q~~~i~~i~~~-~~~lv~apTGsGKT~~--------~l~~~-~~~~---~~~~~~lil~ 71 (414)
T 3oiy_A 7 YEDFRSFFKKKFGKD--LTGYQRLWAKRIVQG-KSFTMVAPTGVGKTTF--------GMMTA-LWLA---RKGKKSALVF 71 (414)
T ss_dssp HHHHHHHHHHHHSSC--CCHHHHHHHHHHTTT-CCEECCSCSSSSHHHH--------HHHHH-HHHH---TTTCCEEEEE
T ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHHHhcC-CCEEEEeCCCCCHHHH--------HHHHH-HHHh---cCCCEEEEEE
Confidence 456778899989996 468999999999999 8999999999999998 55655 2222 3345669999
Q ss_pred chhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhC
Q psy7952 113 PILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYN 191 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~ 191 (444)
|+++|+ .|+.+.+ .+...++++..++|+....++......+. .+.++|+|+||+++... +. .....
T Consensus 72 Pt~~L~-----~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~--~~~~~Iiv~Tp~~l~~~-----l~-~~~~~ 138 (414)
T 3oiy_A 72 PTVTLV-----KQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFE--EDDYHILVFSTQFVSKN-----RE-KLSQK 138 (414)
T ss_dssp SSHHHH-----HHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHH--HTCCSEEEEEHHHHHHC-----HH-HHTTC
T ss_pred CCHHHH-----HHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhh--cCCCCEEEECHHHHHHH-----HH-Hhccc
Confidence 999999 5555555 21113389999999998866555555543 24589999999998521 22 25567
Q ss_pred CccEEEEeccccccccC---------CCcHHHHHHHHHHHHhhC-----------CCCcEEEEecc-CCcchHHHH-HHH
Q psy7952 192 KLAYIVVDEAHCVSEWG---------HDFRPTYRRLGELRQFTG-----------NSIPIIALTAT-AEPSVKQDI-ISV 249 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~---------~~~~~~~~~l~~~~~~~~-----------~~~~~v~lSAT-~~~~~~~~~-~~~ 249 (444)
++++||+||+|++.+++ ..|.+.+ +..++..++ .+.+++++||| ++......+ ...
T Consensus 139 ~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 216 (414)
T 3oiy_A 139 RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI--IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDL 216 (414)
T ss_dssp CCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHH--HHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHH
T ss_pred cccEEEEeChHhhhhccchhhhHHhhcCCcHHH--HHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHh
Confidence 89999999999987644 2244431 233333333 56899999999 444443233 233
Q ss_pred hcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------
Q psy7952 250 LKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------ 323 (444)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------ 323 (444)
+..... .......++...+... .+...+.+++.. .++++||||+++++++.++..|...
T Consensus 217 ~~~~~~----~~~~~~~~i~~~~~~~----~~~~~l~~~l~~-------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~ 281 (414)
T 3oiy_A 217 LNFTVG----RLVSVARNITHVRISS----RSKEKLVELLEI-------FRDGILIFAQTEEEGKELYEYLKRFKFNVGE 281 (414)
T ss_dssp HSCCSS----CCCCCCCSEEEEEESS----CCHHHHHHHHHH-------HCSSEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred hccCcC----ccccccccchheeecc----CHHHHHHHHHHH-------cCCCEEEEECCHHHHHHHHHHHHHcCCceeh
Confidence 321111 1122233333333322 233444455544 2588999999999999999999875
Q ss_pred -cCHHHHHHHHHHHhcCCccEEEE----cCccccccccCC-ccEEEEeCCC--CCHHHHHHHhccCCCCC----CceeEE
Q psy7952 324 -VNKHERSRVQESFMRGEINVITA----TISFGMGIDRQN-VRFVVHWGMP--SSIPAYYQESGRAGRDG----LQSYCR 391 (444)
Q Consensus 324 -~~~~~r~~~~~~f~~g~~~vLva----T~~~~~Gidi~~-~~~Vi~~~~p--~s~~~~~Qr~GR~~R~g----~~g~~~ 391 (444)
+....|. ++.|++|+.+|||| |+++++|+|+|+ +++||++|+| .|...|+||+||+||.| ..|.++
T Consensus 282 ~~h~~~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i 359 (414)
T 3oiy_A 282 TWSEFEKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSV 359 (414)
T ss_dssp SSSCHHHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEE
T ss_pred hhcCcchH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEE
Confidence 2333444 99999999999999 999999999999 9999999999 99999999999999987 479999
Q ss_pred EEec
Q psy7952 392 IYHS 395 (444)
Q Consensus 392 ~~~~ 395 (444)
+++.
T Consensus 360 ~~~~ 363 (414)
T 3oiy_A 360 IFEE 363 (414)
T ss_dssp EECC
T ss_pred EEEc
Confidence 9883
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-43 Score=354.53 Aligned_cols=330 Identities=13% Similarity=0.177 Sum_probs=204.6
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHcc-CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILLR-THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~-~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
..+.+.+.+ .|+.. |+++|.++++.++++ .+++++.+|||+|||++ |.+++ +..+...+..+++||++
T Consensus 128 ~~~~~~l~~-~g~~~-p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~--------~~~~i-l~~l~~~~~~~~vLvl~ 196 (508)
T 3fho_A 128 XXXXXXXXX-XXXXX-XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAA--------FALTM-LSRVDASVPKPQAICLA 196 (508)
T ss_dssp ------------CEE-CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHH--------HHHHH-HHHSCTTCCSCCEEEEC
T ss_pred ccccccccc-ccccC-cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHH--------HHHHH-HHHHHhCCCCceEEEEE
Confidence 345556665 48887 668999999999987 58999999999999999 55555 44444555556789999
Q ss_pred chhhhhcccCccchHhhh-cC-CCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh
Q psy7952 113 PILSSFYLRFRDDKTSIV-TG-RSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY 190 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~ 190 (444)
|+++|+ .|+.+.+ .. ....+.+....++..... ...+++|+|+||+++. ..+......+
T Consensus 197 P~~~L~-----~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~Ivv~T~~~l~----~~l~~~~~~~ 257 (508)
T 3fho_A 197 PSRELA-----RQIMDVVTEMGKYTEVKTAFGIKDSVPKG----------AKIDAQIVIGTPGTVM----DLMKRRQLDA 257 (508)
T ss_dssp SCHHHH-----HHHHHHHHHHSTTSSCCEEC--------------------CCCCSEEEECHHHHH----HHHHTTCSCC
T ss_pred CcHHHH-----HHHHHHHHHhCCccCeeEEEEeCCccccc----------ccCCCCEEEECHHHHH----HHHHcCCccc
Confidence 999999 5555555 21 111233333333322111 1347899999999974 3333334456
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec--CCCCCCc
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT--STFRSNL 268 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~ 268 (444)
.++++||+||+|++.+... +...+. .+...++.+.+++++|||+++........++. .+..+... ....+.+
T Consensus 258 ~~~~lIIiDEaH~~~~~~~-~~~~~~---~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~ 331 (508)
T 3fho_A 258 RDIKVFVLDEADNMLDQQG-LGDQSM---RIKHLLPRNTQIVLFSATFSERVEKYAERFAP--NANEIRLKTEELSVEGI 331 (508)
T ss_dssp TTCCEEEECCHHHHTTC---CHHHHH---HHHHHSCTTCEEEEEESCCSTHHHHHHHHHST--TCEEECCCCCC----CC
T ss_pred cCCCEEEEechhhhcccCC-cHHHHH---HHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcC--CCeEEEeccccCCcccc
Confidence 7899999999999876221 444443 44455666789999999998876665555443 33222221 1122223
Q ss_pred eEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhc
Q psy7952 269 FYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMR 338 (444)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~ 338 (444)
............. ...+..++... .++++||||+++++++.++..|.+. ++..+|..+++.|++
T Consensus 332 ~~~~~~~~~~~~k----~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~ 405 (508)
T 3fho_A 332 KQLYMDCQSEEHK----YNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV 405 (508)
T ss_dssp CCEEEEC--CHHH----HHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS
T ss_pred eEEEEECCchHHH----HHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 3333332222222 23344444333 5689999999999999999999775 777889999999999
Q ss_pred CCccEEEEcCccccccccCCccEEEEeCCC------CCHHHHHHHhccCCCCCCceeEEEEeccc-chhhHHHH
Q psy7952 339 GEINVITATISFGMGIDRQNVRFVVHWGMP------SSIPAYYQESGRAGRDGLQSYCRIYHSEH-SKKSLEYV 405 (444)
Q Consensus 339 g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~ 405 (444)
|+.+|||||+++++|+|+|++++||+++.| .|...|+||+||+||.|+.|.+++++.+. +...+..+
T Consensus 406 g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i 479 (508)
T 3fho_A 406 GTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAI 479 (508)
T ss_dssp SSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHH
T ss_pred CCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHH
Confidence 999999999999999999999999999999 88999999999999999999999999744 44444444
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.2e-39 Score=330.54 Aligned_cols=320 Identities=13% Similarity=0.162 Sum_probs=175.4
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC--ccceeEEEcchhhhhcccCccchH
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN--VRSRNGWISPILSSFYLRFRDDKT 127 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~--~~~~vlil~P~~~L~~~~q~~~~~ 127 (444)
|+++|.++++.++.+ +++++.+|||+|||++ |.+|+ ++.+.... ..+++||++|+++|+ .|+.+.+
T Consensus 8 ~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~--------~~~~~-~~~~~~~~~~~~~~~lil~P~~~L~--~q~~~~~ 75 (556)
T 4a2p_A 8 ARSYQIELAQPAING-KNALICAPTGSGKTFV--------SILIC-EHHFQNMPAGRKAKVVFLATKVPVY--EQQKNVF 75 (556)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHH--------HHHHH-HHHHHTCCSSCCCCEEEECSSHHHH--HHHHHHH
T ss_pred CCHHHHHHHHHHHcC-CCEEEEcCCCChHHHH--------HHHHH-HHHHHhCcccCCCeEEEEeCCHHHH--HHHHHHH
Confidence 568999999999999 9999999999999999 55555 33333322 145779999999999 2223333
Q ss_pred hhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH-hhCCccEEEEeccccc
Q psy7952 128 SIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV-RYNKLAYIVVDEAHCV 204 (444)
Q Consensus 128 ~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~-~~~~~~~iViDE~H~~ 204 (444)
..+ ..+ +.+..++|+.......... ..+++|+|+||+++. ..+..... .+.++++||+||||++
T Consensus 76 ~~~~~~~~---~~~~~~~g~~~~~~~~~~~------~~~~~i~v~T~~~l~----~~~~~~~~~~~~~~~~vViDEah~~ 142 (556)
T 4a2p_A 76 KHHFERQG---YSVQGISGENFSNVSVEKV------IEDSDIIVVTPQILV----NSFEDGTLTSLSIFTLMIFDECHNT 142 (556)
T ss_dssp HHHHGGGT---CCEEECCCC-----CHHHH------HHHCSEEEECHHHHH----HHHHSSSCCCSTTCSEEEEETGGGC
T ss_pred HHHhcccC---ceEEEEeCCCCcchhHHHh------hCCCCEEEECHHHHH----HHHHhCcccccccCCEEEEECCccc
Confidence 333 235 8899999988654433222 135899999999974 22222223 4678999999999999
Q ss_pred cccCCCcHHHHHHHH-HHHHhhCCCCcEEEEeccCCcchH-------H---HHHHHhcCCCCeEEEecC---------CC
Q psy7952 205 SEWGHDFRPTYRRLG-ELRQFTGNSIPIIALTATAEPSVK-------Q---DIISVLKFNKPYKVFKTS---------TF 264 (444)
Q Consensus 205 ~~~~~~~~~~~~~l~-~~~~~~~~~~~~v~lSAT~~~~~~-------~---~~~~~l~~~~~~~~~~~~---------~~ 264 (444)
.+++. +...+..+. .......+..++++|||||..... + .+...++.. .+.... ..
T Consensus 143 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~---~~~~~~~~~~~~~~~~~ 218 (556)
T 4a2p_A 143 TGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ---AISTVRENIQELQRFMN 218 (556)
T ss_dssp STTSH-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCS---EEECCCTTHHHHHHHTC
T ss_pred CCcch-HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCe---EecchhcchHHHHhcCC
Confidence 87653 332221211 111111344889999999965321 1 112222211 011000 01
Q ss_pred CCCceEEEEEccc-------------------------------------------------------------------
Q psy7952 265 RSNLFYDVIFDDL------------------------------------------------------------------- 277 (444)
Q Consensus 265 ~~~~~~~~~~~~~------------------------------------------------------------------- 277 (444)
++...+.......
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (556)
T 4a2p_A 219 KPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRIC 298 (556)
T ss_dssp CCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHH
T ss_pred CCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 1111111100000
Q ss_pred -----------------------------------------------------------------------chhhHHHHH
Q psy7952 278 -----------------------------------------------------------------------LKDSYAHVK 286 (444)
Q Consensus 278 -----------------------------------------------------------------------~~~~~~~~~ 286 (444)
...+...+.
T Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~ 378 (556)
T 4a2p_A 299 RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELV 378 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHH
Confidence 001111122
Q ss_pred HHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------------------cCHHHHHHHHHHHhc-CCccE
Q psy7952 287 EFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------------------VNKHERSRVQESFMR-GEINV 343 (444)
Q Consensus 287 ~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------------------~~~~~r~~~~~~f~~-g~~~v 343 (444)
+.+.+.... ..+.++||||+++.+++.+++.|... ++..+|..+++.|++ |+.+|
T Consensus 379 ~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~v 456 (556)
T 4a2p_A 379 CILDDAYRY--NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRL 456 (556)
T ss_dssp HHHHHHHHH--CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCE
T ss_pred HHHHHHhcC--CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEE
Confidence 222222111 25789999999999999999999653 778899999999999 99999
Q ss_pred EEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhH
Q psy7952 344 ITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSL 402 (444)
Q Consensus 344 LvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~ 402 (444)
||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. +.|.+++++.+.+....
T Consensus 457 LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 457 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp EEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 9999999999999999999999999999999999999 999 88999999987765433
No 20
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.5e-39 Score=337.94 Aligned_cols=321 Identities=19% Similarity=0.286 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
+..+.+.++. +|+.. ++++|.++++.+.++ +++++++|||+|||.+ +.+++ ++.+..+ .+++|++
T Consensus 11 ~~~~~~~l~~-~g~~~-l~~~Q~~~i~~i~~~-~~~lv~apTGsGKT~~--------~~l~i-l~~~~~~---~~~l~i~ 75 (702)
T 2p6r_A 11 SSYAVGILKE-EGIEE-LFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLL--------AEMAM-VREAIKG---GKSLYVV 75 (702)
T ss_dssp HHHHHHHHHC-C---C-CCCCCHHHHHHHTTC-SCEEEECSSHHHHHHH--------HHHHH-HHHHHTT---CCEEEEE
T ss_pred CHHHHHHHHh-CCCCC-CCHHHHHHHHHHhCC-CcEEEEcCCccHHHHH--------HHHHH-HHHHHhC---CcEEEEe
Confidence 4556677766 69987 558999999998888 9999999999999999 44444 2223333 3569999
Q ss_pred chhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH-Hhh
Q psy7952 113 PILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL-VRY 190 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~-~~~ 190 (444)
|+++|+ .++.+.+ .+...++++..++|+...... ..++++|+|+||+++. .++... ..+
T Consensus 76 P~r~La-----~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---------~~~~~~Iiv~Tpe~l~-----~~l~~~~~~l 136 (702)
T 2p6r_A 76 PLRALA-----GEKYESFKKWEKIGLRIGISTGDYESRDE---------HLGDCDIIVTTSEKAD-----SLIRNRASWI 136 (702)
T ss_dssp SSHHHH-----HHHHHHHTTTTTTTCCEEEECSSCBCCSS---------CSTTCSEEEEEHHHHH-----HHHHTTCSGG
T ss_pred CcHHHH-----HHHHHHHHHHHhcCCEEEEEeCCCCcchh---------hccCCCEEEECHHHHH-----HHHHcChhHH
Confidence 999999 6666666 222223889999998765432 1247899999999974 233332 236
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCC-Cce
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRS-NLF 269 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~ 269 (444)
.++++||+||+|.+.+++ ....+..+...+....++.++|+||||+++ .+.+.++++.+ .+... .++ ++.
T Consensus 137 ~~~~~vIiDE~H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~~----~~~~~-~r~~~l~ 207 (702)
T 2p6r_A 137 KAVSCLVVDEIHLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDAD----YYVSD-WRPVPLV 207 (702)
T ss_dssp GGCCEEEETTGGGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTCE----EEECC-CCSSCEE
T ss_pred hhcCEEEEeeeeecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCCC----cccCC-CCCccce
Confidence 789999999999998755 445555555545455667999999999986 45677777521 11111 121 111
Q ss_pred EEEEEccc---chh-----hHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHh-------------------
Q psy7952 270 YDVIFDDL---LKD-----SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR------------------- 322 (444)
Q Consensus 270 ~~~~~~~~---~~~-----~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~------------------- 322 (444)
..+..... ... ........+.+.+. .++++||||+++++++.++..|..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~ 283 (702)
T 2p6r_A 208 EGVLCEGTLELFDGAFSTSRRVKFEELVEECVA----ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEEN 283 (702)
T ss_dssp EEEECSSEEEEEETTEEEEEECCHHHHHHHHHH----TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTC
T ss_pred EEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh----cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhc
Confidence 11110000 000 00002333333332 478999999999999999888763
Q ss_pred --------------h-------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEE----eC---CCCCHHHH
Q psy7952 323 --------------K-------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVH----WG---MPSSIPAY 374 (444)
Q Consensus 323 --------------~-------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~----~~---~p~s~~~~ 374 (444)
. +++++|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.|..+|
T Consensus 284 ~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~ 363 (702)
T 2p6r_A 284 EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEY 363 (702)
T ss_dssp CSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHH
T ss_pred cccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHH
Confidence 0 78999999999999999999999999999999999999998 66 68899999
Q ss_pred HHHhccCCCCC--CceeEEEEecccchh
Q psy7952 375 YQESGRAGRDG--LQSYCRIYHSEHSKK 400 (444)
Q Consensus 375 ~Qr~GR~~R~g--~~g~~~~~~~~~~~~ 400 (444)
.||+||+||.| ..|.|++++.+.+..
T Consensus 364 ~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 364 KQMAGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp HHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred HHHhhhcCCCCCCCCceEEEEecCccHH
Confidence 99999999988 479999999887744
No 21
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.4e-38 Score=342.29 Aligned_cols=289 Identities=16% Similarity=0.213 Sum_probs=203.0
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcc
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISP 113 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P 113 (444)
.++.+.++..+|++ ||++|.++++.++.| ++++++||||+|||++ ++.++ +..+ ...+++||++|
T Consensus 65 ~~~~~~~~~~~gf~--pt~iQ~~ai~~il~g-~dvlv~ApTGSGKTl~--------~l~~i-l~~~---~~~~~~Lil~P 129 (1104)
T 4ddu_A 65 EDFRSFFKKKFGKD--LTGYQRLWAKRIVQG-KSFTMVAPTGVGKTTF--------GMMTA-LWLA---RKGKKSALVFP 129 (1104)
T ss_dssp HHHHHHHHHHSSSC--CCHHHHHHHHHHTTT-CCEEECCSTTCCHHHH--------HHHHH-HHHH---TTTCCEEEEES
T ss_pred HHHHHHHHHhcCCC--CCHHHHHHHHHHHcC-CCEEEEeCCCCcHHHH--------HHHHH-HHHH---hcCCeEEEEec
Confidence 34556777778996 679999999999999 9999999999999998 55554 3323 23346699999
Q ss_pred hhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCC
Q psy7952 114 ILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNK 192 (444)
Q Consensus 114 ~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~ 192 (444)
|++|+ .|+.+.+ .++..++++..++|+....++......+. .+.++|+|+||+++.. .+. ...+.+
T Consensus 130 treLa-----~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~--~g~~~IlV~Tp~rL~~-----~l~-~l~~~~ 196 (1104)
T 4ddu_A 130 TVTLV-----KQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFE--EDDYHILVFSTQFVSK-----NRE-KLSQKR 196 (1104)
T ss_dssp SHHHH-----HHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHH--TSCCSEEEEEHHHHHH-----SHH-HHHTSC
T ss_pred hHHHH-----HHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHh--CCCCCEEEECHHHHHH-----HHH-hhcccC
Confidence 99999 5666665 32333489999999998866555555544 2458999999999842 122 256779
Q ss_pred ccEEEEeccccccccC---------CCcHHHHHHHHHHHHhhC-----------CCCcEEEEeccC-CcchHHHH-HHHh
Q psy7952 193 LAYIVVDEAHCVSEWG---------HDFRPTYRRLGELRQFTG-----------NSIPIIALTATA-EPSVKQDI-ISVL 250 (444)
Q Consensus 193 ~~~iViDE~H~~~~~~---------~~~~~~~~~l~~~~~~~~-----------~~~~~v~lSAT~-~~~~~~~~-~~~l 250 (444)
+++||+||+|++...+ .+|... .+..++..++ .+.|++++|||+ +......+ ...+
T Consensus 197 l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~--~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l 274 (1104)
T 4ddu_A 197 FDFVFVDDVDAVLKASRNIDTLLMMVGIPEE--IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL 274 (1104)
T ss_dssp CSEEEESCHHHHTTSSHHHHHHHHTSSCCHH--HHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHT
T ss_pred cCEEEEeCCCccccccccchhhhHhcCCCHH--HHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcce
Confidence 9999999999876522 113333 1333333333 568999999995 44333222 3332
Q ss_pred cCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-------
Q psy7952 251 KFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------- 323 (444)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------- 323 (444)
.+ .+........++...+... .+...+.+++.. .++++||||++++.++.++..|...
T Consensus 275 ~i----~v~~~~~~~~~i~~~~~~~----~k~~~L~~ll~~-------~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~ 339 (1104)
T 4ddu_A 275 NF----TVGRLVSVARNITHVRISS----RSKEKLVELLEI-------FRDGILIFAQTEEEGKELYEYLKRFKFNVGET 339 (1104)
T ss_dssp CC----CCCBCCCCCCCEEEEEESC----CCHHHHHHHHHH-------HCSSEEEEESSSHHHHHHHHHHHHTTCCEEES
T ss_pred eE----EeccCCCCcCCceeEEEec----CHHHHHHHHHHh-------cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeE
Confidence 21 1122223334444444332 234444555554 2589999999999999999999876
Q ss_pred cCHHHHHHHHHHHhcCCccEEEE----cCccccccccCC-ccEEEEeCCCC
Q psy7952 324 VNKHERSRVQESFMRGEINVITA----TISFGMGIDRQN-VRFVVHWGMPS 369 (444)
Q Consensus 324 ~~~~~r~~~~~~f~~g~~~vLva----T~~~~~Gidi~~-~~~Vi~~~~p~ 369 (444)
+.. +|.. ++.|++|+.+|||| |+++++|+|+|+ +++||++|+|.
T Consensus 340 lhg-~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 340 WSE-FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp SSS-HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred ecC-cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 122 3555 99999999999999 999999999999 99999999998
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=9.1e-39 Score=325.81 Aligned_cols=320 Identities=13% Similarity=0.142 Sum_probs=201.3
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC--ccceeEEEcchhhhhcccCccchH
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN--VRSRNGWISPILSSFYLRFRDDKT 127 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~--~~~~vlil~P~~~L~~~~q~~~~~ 127 (444)
|+++|.++++.++.+ +++++.+|||+|||++ |.+|+ ++.+.... ..+++||++|+++|+ .|+.+.+
T Consensus 5 ~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~--------~~~~~-~~~~~~~~~~~~~~~lil~P~~~L~--~q~~~~~ 72 (555)
T 3tbk_A 5 PRNYQLELALPAKKG-KNTIICAPTGCGKTFV--------SLLIC-EHHLKKFPCGQKGKVVFFANQIPVY--EQQATVF 72 (555)
T ss_dssp CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHH--------HHHHH-HHHHHTCCSSCCCCEEEECSSHHHH--HHHHHHH
T ss_pred CcHHHHHHHHHHhCC-CCEEEEeCCCChHHHH--------HHHHH-HHHHHhcccCCCCEEEEEeCCHHHH--HHHHHHH
Confidence 568999999999999 9999999999999999 55555 33333322 145779999999999 2223333
Q ss_pred hhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH-hhCCccEEEEeccccc
Q psy7952 128 SIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV-RYNKLAYIVVDEAHCV 204 (444)
Q Consensus 128 ~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~-~~~~~~~iViDE~H~~ 204 (444)
..+ ..+ +.+..++|+........... .+++|+|+||+++. ..+..... .+.++++||+||||++
T Consensus 73 ~~~~~~~~---~~~~~~~g~~~~~~~~~~~~------~~~~i~v~T~~~l~----~~~~~~~~~~~~~~~~vViDEah~~ 139 (555)
T 3tbk_A 73 SRYFERLG---YNIASISGATSDSVSVQHII------EDNDIIILTPQILV----NNLNNGAIPSLSVFTLMIFDECHNT 139 (555)
T ss_dssp HHHHHTTT---CCEEEECTTTGGGSCHHHHH------HHCSEEEECHHHHH----HHHHTSSSCCGGGCSEEEETTGGGC
T ss_pred HHHhccCC---cEEEEEcCCCcchhhHHHHh------cCCCEEEECHHHHH----HHHhcCcccccccCCEEEEECcccc
Confidence 333 235 88999999986654433221 35899999999974 22222222 4667899999999999
Q ss_pred cccCCCcHHHHHHHHHHHHhh-----CCCCcEEEEeccCCcch-------HHHHHHHhcCCCCeEEEecC---------C
Q psy7952 205 SEWGHDFRPTYRRLGELRQFT-----GNSIPIIALTATAEPSV-------KQDIISVLKFNKPYKVFKTS---------T 263 (444)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~~v~lSAT~~~~~-------~~~~~~~l~~~~~~~~~~~~---------~ 263 (444)
.+.+. +...+ ...+... ...++++++||||.... .+.+......-....+.... .
T Consensus 140 ~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 215 (555)
T 3tbk_A 140 SKNHP-YNQIM---FRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVV 215 (555)
T ss_dssp STTCH-HHHHH---HHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTC
T ss_pred CCcch-HHHHH---HHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhc
Confidence 76542 33322 2222221 23478999999997632 12221111111110111100 0
Q ss_pred CCCCceEEEEEccc------------------------------------------------------------------
Q psy7952 264 FRSNLFYDVIFDDL------------------------------------------------------------------ 277 (444)
Q Consensus 264 ~~~~~~~~~~~~~~------------------------------------------------------------------ 277 (444)
.++...+.......
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (555)
T 3tbk_A 216 YKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESR 295 (555)
T ss_dssp CCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHH
T ss_pred CCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHH
Confidence 11111111111000
Q ss_pred -------------------------------------------------------------------------chhhHHH
Q psy7952 278 -------------------------------------------------------------------------LKDSYAH 284 (444)
Q Consensus 278 -------------------------------------------------------------------------~~~~~~~ 284 (444)
...+...
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 375 (555)
T 3tbk_A 296 VCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRD 375 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHH
Confidence 0111122
Q ss_pred HHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------------------cCHHHHHHHHHHHhc-CCc
Q psy7952 285 VKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------------------VNKHERSRVQESFMR-GEI 341 (444)
Q Consensus 285 ~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------------------~~~~~r~~~~~~f~~-g~~ 341 (444)
+.+.+....... .+.++||||+++.+++.+++.|... ++..+|..+++.|++ |+.
T Consensus 376 l~~~l~~~~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~ 453 (555)
T 3tbk_A 376 LYLVLQEEYHLK--PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDN 453 (555)
T ss_dssp HHHHHHHHHHHC--TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CC
T ss_pred HHHHHHHHhccC--CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCe
Confidence 222333322222 4689999999999999999999752 677899999999998 999
Q ss_pred cEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhH
Q psy7952 342 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSL 402 (444)
Q Consensus 342 ~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~ 402 (444)
+|||||+++++|+|+|++++||++|+|+|+..|+||+|| ||. ++|.+++++.+.+....
T Consensus 454 ~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 454 NILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp SEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred eEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 999999999999999999999999999999999999999 898 89999999987766544
No 23
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.2e-38 Score=330.47 Aligned_cols=317 Identities=18% Similarity=0.247 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHH-HHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRH-ILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~-~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
+..+.+.++. +|+.. ++++|.++++. +.++ +++++++|||+|||.+ +.+++ ++.+... ..+++|+
T Consensus 16 ~~~~~~~l~~-~g~~~-l~~~Q~~~i~~~~~~~-~~~lv~apTGsGKT~~--------~~l~i-l~~~~~~--~~~il~i 81 (715)
T 2va8_A 16 PSNVIEIIKK-RGIKK-LNPPQTEAVKKGLLEG-NRLLLTSPTGSGKTLI--------AEMGI-ISFLLKN--GGKAIYV 81 (715)
T ss_dssp CHHHHHHHHT-TSCCB-CCHHHHHHHHTTTTTT-CCEEEECCTTSCHHHH--------HHHHH-HHHHHHS--CSEEEEE
T ss_pred CHHHHHHHHh-CCCCC-CCHHHHHHHHHHhcCC-CcEEEEcCCCCcHHHH--------HHHHH-HHHHHHC--CCeEEEE
Confidence 4567788887 69987 56899999999 5566 9999999999999999 44444 2223312 2467999
Q ss_pred cchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh
Q psy7952 112 SPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY 190 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~ 190 (444)
+|+++|+ .++.+.+ .....++++..++|+....... ..+++|+|+||+++. ..+......+
T Consensus 82 ~P~r~La-----~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~---------~~~~~Iiv~Tpe~l~----~~~~~~~~~l 143 (715)
T 2va8_A 82 TPLRALT-----NEKYLTFKDWELIGFKVAMTSGDYDTDDAW---------LKNYDIIITTYEKLD----SLWRHRPEWL 143 (715)
T ss_dssp CSCHHHH-----HHHHHHHGGGGGGTCCEEECCSCSSSCCGG---------GGGCSEEEECHHHHH----HHHHHCCGGG
T ss_pred eCcHHHH-----HHHHHHHHHhhcCCCEEEEEeCCCCCchhh---------cCCCCEEEEcHHHHH----HHHhCChhHh
Confidence 9999999 5666655 2211128899999887654320 136899999999974 2222333336
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCC-ce
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSN-LF 269 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~ 269 (444)
.++++||+||+|.+.+.+ +...+..+...+. +.++|+||||+++ .+.+.++++.+ .+.. ..++. +.
T Consensus 144 ~~~~~vIiDE~H~l~~~~--~~~~l~~i~~~~~----~~~ii~lSATl~n--~~~~~~~l~~~----~~~~-~~r~~~l~ 210 (715)
T 2va8_A 144 NEVNYFVLDELHYLNDPE--RGPVVESVTIRAK----RRNLLALSATISN--YKQIAKWLGAE----PVAT-NWRPVPLI 210 (715)
T ss_dssp GGEEEEEECSGGGGGCTT--THHHHHHHHHHHH----TSEEEEEESCCTT--HHHHHHHHTCE----EEEC-CCCSSCEE
T ss_pred hccCEEEEechhhcCCcc--cchHHHHHHHhcc----cCcEEEEcCCCCC--HHHHHHHhCCC----ccCC-CCCCCCce
Confidence 789999999999987654 4444554443322 4899999999976 35677777531 1111 11111 11
Q ss_pred E------------EEEEcccchh---hHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----------
Q psy7952 270 Y------------DVIFDDLLKD---SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------- 323 (444)
Q Consensus 270 ~------------~~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------- 323 (444)
. .......... ........+.+.+. .++++||||+++++++.++..|.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~ 286 (715)
T 2va8_A 211 EGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS----KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENAL 286 (715)
T ss_dssp EEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT----TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHH
T ss_pred EEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh----cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHH
Confidence 1 1111110000 01233444444432 4789999999999999999888631
Q ss_pred -----------------------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEE----
Q psy7952 324 -----------------------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVH---- 364 (444)
Q Consensus 324 -----------------------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~---- 364 (444)
++.++|..+++.|++|.++|||||+++++|+|+|++++||+
T Consensus 287 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~ 366 (715)
T 2va8_A 287 SEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYR 366 (715)
T ss_dssp HHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--
T ss_pred HHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCee
Confidence 77899999999999999999999999999999999999998
Q ss_pred eC-------CCCCHHHHHHHhccCCCCC--CceeEEEEecccc
Q psy7952 365 WG-------MPSSIPAYYQESGRAGRDG--LQSYCRIYHSEHS 398 (444)
Q Consensus 365 ~~-------~p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~ 398 (444)
|+ .|.|..+|.||+||+||.| ..|.|++++.+.+
T Consensus 367 ~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 367 FNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp ------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred ccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 88 7999999999999999987 4799999998765
No 24
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.3e-38 Score=331.51 Aligned_cols=320 Identities=19% Similarity=0.259 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHH-HHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRH-ILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~-~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
+..+.+.++. +|+.. ++++|.++++. +.++ +++++++|||+|||.+ +.+++ ++.+... ..+++|+
T Consensus 9 ~~~~~~~l~~-~g~~~-l~~~Q~~~i~~~~~~~-~~~lv~apTGsGKT~~--------~~l~i-l~~~~~~--~~~~l~i 74 (720)
T 2zj8_A 9 DERIKSTLKE-RGIES-FYPPQAEALKSGILEG-KNALISIPTASGKTLI--------AEIAM-VHRILTQ--GGKAVYI 74 (720)
T ss_dssp CHHHHHHHHH-TTCCB-CCHHHHHHHTTTGGGT-CEEEEECCGGGCHHHH--------HHHHH-HHHHHHH--CSEEEEE
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhcCC-CcEEEEcCCccHHHHH--------HHHHH-HHHHHhC--CCEEEEE
Confidence 4567788887 69987 56899999998 6676 9999999999999999 44454 2223311 2466999
Q ss_pred cchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh
Q psy7952 112 SPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY 190 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~ 190 (444)
+|+++|+ .++.+.+ .+...++++..++|+....... .++++|+|+||+++. ..+......+
T Consensus 75 ~P~raLa-----~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~---------~~~~~Iiv~Tpe~l~----~~~~~~~~~l 136 (720)
T 2zj8_A 75 VPLKALA-----EEKFQEFQDWEKIGLRVAMATGDYDSKDEW---------LGKYDIIIATAEKFD----SLLRHGSSWI 136 (720)
T ss_dssp CSSGGGH-----HHHHHHTGGGGGGTCCEEEECSCSSCCCGG---------GGGCSEEEECHHHHH----HHHHHTCTTG
T ss_pred cCcHHHH-----HHHHHHHHHHHhcCCEEEEecCCCCccccc---------cCCCCEEEECHHHHH----HHHHcChhhh
Confidence 9999999 6666665 2211128899999976654321 247899999999974 2222222336
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCC-ce
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSN-LF 269 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~ 269 (444)
.++++||+||+|++.+++ ....+..+...+ +++.++|+||||+++ ...+.++++.. .+.. ..++. ..
T Consensus 137 ~~~~~vIiDE~H~l~~~~--r~~~~~~ll~~l---~~~~~ii~lSATl~n--~~~~~~~l~~~----~~~~-~~rp~~l~ 204 (720)
T 2zj8_A 137 KDVKILVADEIHLIGSRD--RGATLEVILAHM---LGKAQIIGLSATIGN--PEELAEWLNAE----LIVS-DWRPVKLR 204 (720)
T ss_dssp GGEEEEEEETGGGGGCTT--THHHHHHHHHHH---BTTBEEEEEECCCSC--HHHHHHHTTEE----EEEC-CCCSSEEE
T ss_pred hcCCEEEEECCcccCCCc--ccHHHHHHHHHh---hcCCeEEEEcCCcCC--HHHHHHHhCCc----ccCC-CCCCCcce
Confidence 789999999999987654 444444443333 235899999999976 35677776521 1111 11221 11
Q ss_pred EEEE------EcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh--------------------
Q psy7952 270 YDVI------FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-------------------- 323 (444)
Q Consensus 270 ~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-------------------- 323 (444)
..+. ...............+.+.+. .++++||||+++++++.++..|.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i 280 (720)
T 2zj8_A 205 RGVFYQGFVTWEDGSIDRFSSWEELVYDAIR----KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSL 280 (720)
T ss_dssp EEEEETTEEEETTSCEEECSSTTHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTS
T ss_pred EEEEeCCeeeccccchhhhhHHHHHHHHHHh----CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 1111 111000001112233333322 4689999999999999998888631
Q ss_pred -----------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEE----eC----CCCCHH
Q psy7952 324 -----------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVH----WG----MPSSIP 372 (444)
Q Consensus 324 -----------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~----~~----~p~s~~ 372 (444)
+++++|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.|..
T Consensus 281 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~ 360 (720)
T 2zj8_A 281 EENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPII 360 (720)
T ss_dssp CSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHH
T ss_pred hcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHH
Confidence 78899999999999999999999999999999999999998 55 589999
Q ss_pred HHHHHhccCCCCC--CceeEEEEecccchh
Q psy7952 373 AYYQESGRAGRDG--LQSYCRIYHSEHSKK 400 (444)
Q Consensus 373 ~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~ 400 (444)
+|.||+||+||.| ..|.|++++.+.+..
T Consensus 361 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 361 EVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp HHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred HHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 9999999999987 478999999877743
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-38 Score=341.94 Aligned_cols=319 Identities=18% Similarity=0.175 Sum_probs=222.7
Q ss_pred HHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcc
Q psy7952 41 KALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYL 120 (444)
Q Consensus 41 ~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~ 120 (444)
...++|. ++++|.++++.+..| ++++++||||+|||++ |.+++ +..+..+ .+++|++|+++|+
T Consensus 178 ~~~~~f~--ltp~Q~~AI~~i~~g-~dvLV~ApTGSGKTlv--------a~l~i-~~~l~~g---~rvlvl~PtraLa-- 240 (1108)
T 3l9o_A 178 ARTYPFT--LDPFQDTAISCIDRG-ESVLVSAHTSAGKTVV--------AEYAI-AQSLKNK---QRVIYTSPIKALS-- 240 (1108)
T ss_dssp SSCCSSC--CCHHHHHHHHHHTTT-CCEEEECCSSSHHHHH--------HHHHH-HHHHHTT---CEEEEEESSHHHH--
T ss_pred HHhCCCC--CCHHHHHHHHHHHcC-CCEEEECCCCCChHHH--------HHHHH-HHHHhcC---CeEEEEcCcHHHH--
Confidence 3444555 468999999999998 9999999999999999 55555 3333333 3569999999999
Q ss_pred cCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEe
Q psy7952 121 RFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVD 199 (444)
Q Consensus 121 ~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViD 199 (444)
.|+.+.+ ... -.+..++|+... .++++|+|+||++|. ..+......+.++++||+|
T Consensus 241 ---~Q~~~~l~~~~---~~VglltGd~~~-------------~~~~~IlV~Tpe~L~----~~L~~~~~~l~~l~lVVID 297 (1108)
T 3l9o_A 241 ---NQKYRELLAEF---GDVGLMTGDITI-------------NPDAGCLVMTTEILR----SMLYRGSEVMREVAWVIFD 297 (1108)
T ss_dssp ---HHHHHHHHHHT---SSEEEECSSCBC-------------CCSCSEEEEEHHHHH----HHHHHCSSHHHHEEEEEEE
T ss_pred ---HHHHHHHHHHh---CCccEEeCcccc-------------CCCCCEEEeChHHHH----HHHHcCccccccCCEEEEh
Confidence 6777777 333 257778887764 357899999999985 3344444446789999999
Q ss_pred ccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhc--CCCCeEEEecCCCCCCceEEEEEccc
Q psy7952 200 EAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK--FNKPYKVFKTSTFRSNLFYDVIFDDL 277 (444)
Q Consensus 200 E~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (444)
|||++.+++ +...+..+ +..++...++|+||||+++.. .+..+++ ...+..+........+....+.....
T Consensus 298 EaH~l~d~~--rg~~~e~i---i~~l~~~~qvl~lSATipn~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~ 370 (1108)
T 3l9o_A 298 EVHYMRDKE--RGVVWEET---IILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHG 370 (1108)
T ss_dssp TGGGTTSHH--HHHHHHHH---HHHSCTTSEEEEEECSCSSCH--HHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTS
T ss_pred hhhhccccc--hHHHHHHH---HHhcCCCceEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEeecCC
Confidence 999998765 45444443 445677799999999987652 2233322 22333443333222222221111000
Q ss_pred ----------ch---h--------------------------------------hHHHHHHHHHHHhccCCCCCceEEEE
Q psy7952 278 ----------LK---D--------------------------------------SYAHVKEFIEKCLGKDNKANNCGIIY 306 (444)
Q Consensus 278 ----------~~---~--------------------------------------~~~~~~~~l~~~l~~~~~~~~~~iVf 306 (444)
.. . ....+..++..+... ...++|||
T Consensus 371 ~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~---~~~~vIVF 447 (1108)
T 3l9o_A 371 DGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK---KYNPVIVF 447 (1108)
T ss_dssp SCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT---TCCCEEEE
T ss_pred cceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc---CCCCEEEE
Confidence 00 0 012222333333222 46799999
Q ss_pred ecccchHHHHHHHHHhh-------------------------------------------------cCHHHHHHHHHHHh
Q psy7952 307 CRTREHTTDLADALRRK-------------------------------------------------VNKHERSRVQESFM 337 (444)
Q Consensus 307 ~~s~~~~~~l~~~L~~~-------------------------------------------------~~~~~r~~~~~~f~ 337 (444)
|+++..|+.++..|... +++.+|..+++.|+
T Consensus 448 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~ 527 (1108)
T 3l9o_A 448 SFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ 527 (1108)
T ss_dssp ESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHh
Confidence 99999999999886530 78999999999999
Q ss_pred cCCccEEEEcCccccccccCCccEEEEeCC--------CCCHHHHHHHhccCCCCC--CceeEEEEeccc-chhhHHHHH
Q psy7952 338 RGEINVITATISFGMGIDRQNVRFVVHWGM--------PSSIPAYYQESGRAGRDG--LQSYCRIYHSEH-SKKSLEYVI 406 (444)
Q Consensus 338 ~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~--------p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~-~~~~~~~~~ 406 (444)
+|.++|||||+++++|||+|++++||+++. |.|..+|+||+||+||.| ..|++++++.+. +...+..++
T Consensus 528 ~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 528 EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp HTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred CCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 999999999999999999999999996654 347889999999999999 689999988765 555566666
Q ss_pred hhc
Q psy7952 407 KTD 409 (444)
Q Consensus 407 ~~~ 409 (444)
...
T Consensus 608 ~~~ 610 (1108)
T 3l9o_A 608 KGQ 610 (1108)
T ss_dssp HCC
T ss_pred cCC
Confidence 544
No 26
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=4.5e-37 Score=332.61 Aligned_cols=314 Identities=20% Similarity=0.180 Sum_probs=225.7
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHc----cC-CcEEEEccCCCcccccccccccceEEeCCCccccccCCcccee
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILL----RT-HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRN 108 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~----~~-~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~v 108 (444)
....+.+...||++. |++|.++++.++. +. .++++++|||+|||.+|+. ++ ...+..+ +++
T Consensus 590 ~~~~~~~~~~f~~~~--t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~--------aa-~~~~~~g---~~v 655 (1151)
T 2eyq_A 590 REQYQLFCDSFPFET--TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMR--------AA-FLAVDNH---KQV 655 (1151)
T ss_dssp HHHHHHHHHTCCSCC--CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHH--------HH-HHHHTTT---CEE
T ss_pred HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHH--------HH-HHHHHhC---CeE
Confidence 344566777789984 7899999999987 42 3899999999999998433 32 1112222 367
Q ss_pred EEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 109 GWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 109 lil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
+|++||++|+ .|+.+.+ .+....+++..+++..+..+....+..+. .+.++|+|+||+.+ ..
T Consensus 656 lvlvPt~~La-----~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~--~g~~dIvV~T~~ll---------~~ 719 (1151)
T 2eyq_A 656 AVLVPTTLLA-----QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA--EGKIDILIGTHKLL---------QS 719 (1151)
T ss_dssp EEECSSHHHH-----HHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHH--TTCCSEEEECTHHH---------HS
T ss_pred EEEechHHHH-----HHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECHHHH---------hC
Confidence 9999999999 5566555 22222388999998888777766666654 35799999998764 33
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCC
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRS 266 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 266 (444)
...+.++++||+||+|++ +.... .. +..+..+.++++|||||.+........ ++.+...+......+.
T Consensus 720 ~~~~~~l~lvIiDEaH~~---g~~~~---~~----l~~l~~~~~vl~lSATp~p~~l~~~~~--~~~~~~~i~~~~~~r~ 787 (1151)
T 2eyq_A 720 DVKFKDLGLLIVDEEHRF---GVRHK---ER----IKAMRANVDILTLTATPIPRTLNMAMS--GMRDLSIIATPPARRL 787 (1151)
T ss_dssp CCCCSSEEEEEEESGGGS---CHHHH---HH----HHHHHTTSEEEEEESSCCCHHHHHHHT--TTSEEEECCCCCCBCB
T ss_pred CccccccceEEEechHhc---ChHHH---HH----HHHhcCCCCEEEEcCCCChhhHHHHHh--cCCCceEEecCCCCcc
Confidence 345788999999999995 31111 22 222334588999999998876554332 2333222222222233
Q ss_pred CceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------------cCHHHHHHHHH
Q psy7952 267 NLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------------VNKHERSRVQE 334 (444)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------------~~~~~r~~~~~ 334 (444)
.+...+.... . ..+.+.+...+ ..+++++|||+++++++.+++.|.+. ++..+|..+++
T Consensus 788 ~i~~~~~~~~----~-~~i~~~il~~l----~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~ 858 (1151)
T 2eyq_A 788 AVKTFVREYD----S-MVVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 858 (1151)
T ss_dssp CEEEEEEECC----H-HHHHHHHHHHH----TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHH
T ss_pred ccEEEEecCC----H-HHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHH
Confidence 3332222211 1 12222222222 24789999999999999999999875 88999999999
Q ss_pred HHhcCCccEEEEcCccccccccCCccEEEEeCC-CCCHHHHHHHhccCCCCCCceeEEEEecccc
Q psy7952 335 SFMRGEINVITATISFGMGIDRQNVRFVVHWGM-PSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 398 (444)
Q Consensus 335 ~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~-p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 398 (444)
.|++|+.+|||||+++++|+|+|++++||+++. +.+...|+||+||+||.|+.|+|++++++.+
T Consensus 859 ~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 859 DFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp HHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred HHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 999999999999999999999999999999888 5689999999999999999999999987653
No 27
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.1e-38 Score=354.56 Aligned_cols=349 Identities=16% Similarity=0.194 Sum_probs=239.2
Q ss_pred HHHHHh-CCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhh
Q psy7952 39 KLKALF-GFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSS 117 (444)
Q Consensus 39 ~l~~~~-g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L 117 (444)
..+..| |++. ++++|.++++.++.+++|++++||||+|||++|.++++..+.-.. ...-.......++||++|+++|
T Consensus 69 ~~~~~f~g~~~-ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~-~~~~~~~~~~~k~lyiaP~kAL 146 (1724)
T 4f92_B 69 YAQAGFEGFKT-LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHI-NMDGTINVDDFKIIYIAPMRSL 146 (1724)
T ss_dssp GGSTTCTTCSB-CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGC-CTTSSCCTTSCEEEEECSSHHH
T ss_pred HHHHhcCCCCC-CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhc-cccccccCCCCEEEEECCHHHH
Confidence 344445 7887 558999999999987699999999999999997666543111000 0000001123478999999999
Q ss_pred hcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH---HhhCC
Q psy7952 118 FYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL---VRYNK 192 (444)
Q Consensus 118 ~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~---~~~~~ 192 (444)
+ .|..+.+ .++..++++..++|+....... ..+++|+|+|||++ +.+++.. ..+.+
T Consensus 147 a-----~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---------~~~~~IlVtTpEkl-----d~llr~~~~~~~l~~ 207 (1724)
T 4f92_B 147 V-----QEMVGSFGKRLATYGITVAELTGDHQLCKEE---------ISATQIIVCTPEKW-----DIITRKGGERTYTQL 207 (1724)
T ss_dssp H-----HHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---------GGGCSEEEECHHHH-----HHHTTSSTTHHHHTT
T ss_pred H-----HHHHHHHHHHHhhCCCEEEEEECCCCCCccc---------cCCCCEEEECHHHH-----HHHHcCCccchhhcC
Confidence 9 6777766 2333338999999987654321 24689999999996 3333322 23578
Q ss_pred ccEEEEecccccccc-CCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCe-EEEecCCCCCC-ce
Q psy7952 193 LAYIVVDEAHCVSEW-GHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPY-KVFKTSTFRSN-LF 269 (444)
Q Consensus 193 ~~~iViDE~H~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~-~~ 269 (444)
+++||+||+|.+.+. |......+..+.+.....+.+.|+|+||||+++ .+++.++++...+. ........||. +.
T Consensus 208 v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N--~~dvA~wL~~~~~~~~~~~~~~~RPvpL~ 285 (1724)
T 4f92_B 208 VRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN--YEDVATFLRVDPAKGLFYFDNSFRPVPLE 285 (1724)
T ss_dssp EEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT--HHHHHHHTTCCHHHHEEECCGGGCSSCEE
T ss_pred cCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC--HHHHHHHhCCCCCCCeEEECCCCccCccE
Confidence 999999999988652 211222223333334456677999999999976 45678888643221 12223333442 22
Q ss_pred EEEEE--cccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------------------------
Q psy7952 270 YDVIF--DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------------------------ 323 (444)
Q Consensus 270 ~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------------------------ 323 (444)
..+.. ..............+...+.... .++++||||+|++.|+.++..|.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (1724)
T 4f92_B 286 QTYVGITEKKAIKRFQIMNEIVYEKIMEHA-GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTE 364 (1724)
T ss_dssp EECCEECCCCHHHHHHHHHHHHHHHHTTCC-SSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHT
T ss_pred EEEeccCCcchhhhhHHHHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhh
Confidence 21111 11111222233333333333322 5679999999999999998888642
Q ss_pred -----------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEE----eC------CCCC
Q psy7952 324 -----------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVH----WG------MPSS 370 (444)
Q Consensus 324 -----------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~----~~------~p~s 370 (444)
+++++|..+++.|++|.++|||||++++.|||+|..++||. ++ .|.|
T Consensus 365 ~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls 444 (1724)
T 4f92_B 365 AEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELG 444 (1724)
T ss_dssp TSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECC
T ss_pred hcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCC
Confidence 78999999999999999999999999999999999998884 33 3568
Q ss_pred HHHHHHHhccCCCCCC--ceeEEEEecccchhhHHHHHhhccc
Q psy7952 371 IPAYYQESGRAGRDGL--QSYCRIYHSEHSKKSLEYVIKTDTS 411 (444)
Q Consensus 371 ~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (444)
..+|.||+|||||.|. .|.++++..+.+...+..++....+
T Consensus 445 ~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~p 487 (1724)
T 4f92_B 445 ALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLP 487 (1724)
T ss_dssp HHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSC
T ss_pred HHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCc
Confidence 9999999999999864 6999999999888888888766544
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.3e-38 Score=331.35 Aligned_cols=322 Identities=13% Similarity=0.190 Sum_probs=181.8
Q ss_pred HhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC--ccceeEEEcchhhhhcc
Q psy7952 43 LFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN--VRSRNGWISPILSSFYL 120 (444)
Q Consensus 43 ~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~--~~~~vlil~P~~~L~~~ 120 (444)
.+|+.. |+++|.++++.++.| +++++++|||+|||++ |.+|+ +..+.... ...++||++|+++|+
T Consensus 243 ~~g~~~-l~~~Q~~~i~~~l~~-~~~ll~~~TGsGKTl~--------~~~~i-~~~l~~~~~~~~~~~Lvl~Pt~~L~-- 309 (797)
T 4a2q_A 243 VYETKK-ARSYQIELAQPAING-KNALICAPTGSGKTFV--------SILIC-EHHFQNMPAGRKAKVVFLATKVPVY-- 309 (797)
T ss_dssp -----C-CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHH--------HHHHH-HHHHHTCCSSCCCCEEEECSSHHHH--
T ss_pred hcCCCC-CCHHHHHHHHHHHhC-CCEEEEeCCCChHHHH--------HHHHH-HHHHHhccccCCCeEEEEeCCHHHH--
Confidence 457777 669999999999999 9999999999999999 55555 33333321 145779999999999
Q ss_pred cCccchHhhh-----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH-hhCCcc
Q psy7952 121 RFRDDKTSIV-----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV-RYNKLA 194 (444)
Q Consensus 121 ~q~~~~~~~l-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~-~~~~~~ 194 (444)
.|+...+ ..+ +++..++|+.......... ..+++|+|+||+++. ..+..... .+.+++
T Consensus 310 ---~Q~~~~~~~~~~~~~---~~v~~~~g~~~~~~~~~~~------~~~~~Ivv~Tp~~l~----~~l~~~~~~~~~~~~ 373 (797)
T 4a2q_A 310 ---EQQKNVFKHHFERQG---YSVQGISGENFSNVSVEKV------IEDSDIIVVTPQILV----NSFEDGTLTSLSIFT 373 (797)
T ss_dssp ---HHHHHHHHHHHGGGT---CCEEEECCC-----CHHHH------HHTCSEEEECHHHHH----HHHHSSSCCCGGGCS
T ss_pred ---HHHHHHHHHhcccCC---ceEEEEeCCcchhhhHHHh------hCCCCEEEEchHHHH----HHHHhccccccccCC
Confidence 4554444 225 8999999988655433222 237899999999974 22222222 456789
Q ss_pred EEEEeccccccccCCCcHHHHHHHHHH-HHhhCCCCcEEEEeccCCcch-------HHH---HHHHhcCCCCeEEEecC-
Q psy7952 195 YIVVDEAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSV-------KQD---IISVLKFNKPYKVFKTS- 262 (444)
Q Consensus 195 ~iViDE~H~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~v~lSAT~~~~~-------~~~---~~~~l~~~~~~~~~~~~- 262 (444)
+||+||||++.+.+. +...+..+... .....+.++++++||||.... .+. +...++.. .+....
T Consensus 374 ~iViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~---~i~~~~~ 449 (797)
T 4a2q_A 374 LMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ---AISTVRE 449 (797)
T ss_dssp EEEETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS---EEECCCT
T ss_pred EEEEECccccCCCcc-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc---EEecccc
Confidence 999999999876442 33322222111 111144588999999996421 111 22222210 011000
Q ss_pred --------CCCCCceEEEEEc------------------------------------cc---------------------
Q psy7952 263 --------TFRSNLFYDVIFD------------------------------------DL--------------------- 277 (444)
Q Consensus 263 --------~~~~~~~~~~~~~------------------------------------~~--------------------- 277 (444)
..++...+..... ..
T Consensus 450 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 529 (797)
T 4a2q_A 450 NIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQL 529 (797)
T ss_dssp THHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcc
Confidence 0111111110000 00
Q ss_pred --------------------------------------------------------------------------------
Q psy7952 278 -------------------------------------------------------------------------------- 277 (444)
Q Consensus 278 -------------------------------------------------------------------------------- 277 (444)
T Consensus 530 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 609 (797)
T 4a2q_A 530 EDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDET 609 (797)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTT
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence
Q ss_pred -chhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------------------cCHHHHHHHHH
Q psy7952 278 -LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------------------VNKHERSRVQE 334 (444)
Q Consensus 278 -~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------------------~~~~~r~~~~~ 334 (444)
...+...+.+.+.+.... ..+.++||||+++.+++.+++.|... ++..+|..+++
T Consensus 610 ~~~~K~~~L~~lL~~~~~~--~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~ 687 (797)
T 4a2q_A 610 NENPKLEELVCILDDAYRY--NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLD 687 (797)
T ss_dssp CCCHHHHHHHHHHHHHHHH--CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------
T ss_pred CCChHHHHHHHHHHHHhcc--CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHH
Confidence 000111111222221111 25689999999999999999999652 77889999999
Q ss_pred HHhc-CCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhh
Q psy7952 335 SFMR-GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 401 (444)
Q Consensus 335 ~f~~-g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 401 (444)
.|++ |+.+|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. +.|.+++++.+.+...
T Consensus 688 ~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 688 AFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp ------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred HhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 9998 999999999999999999999999999999999999999999 999 8899999998776543
No 29
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.7e-38 Score=332.30 Aligned_cols=332 Identities=14% Similarity=0.154 Sum_probs=187.7
Q ss_pred HHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC--ccceeEEEcchhh
Q psy7952 39 KLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN--VRSRNGWISPILS 116 (444)
Q Consensus 39 ~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~--~~~~vlil~P~~~ 116 (444)
++.. +|+.. |+++|.++++.++.| +++++++|||+|||++ +.+++ ++.+.... ...++||++|+++
T Consensus 5 ~l~~-~g~~~-lr~~Q~~~i~~~l~g-~~~iv~~~TGsGKTl~--------~~~~i-~~~l~~~~~~~~~~~lvl~Pt~~ 72 (696)
T 2ykg_A 5 DTNL-YSPFK-PRNYQLELALPAMKG-KNTIICAPTGCGKTFV--------SLLIC-EHHLKKFPQGQKGKVVFFANQIP 72 (696)
T ss_dssp --CT-TC--C-CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHH--------HHHHH-HHHHHHSCTTCCCCEEEECSSHH
T ss_pred cccc-cCCCC-ccHHHHHHHHHHHcC-CCEEEEcCCCchHHHH--------HHHHH-HHHHHhCccCCCCeEEEEECCHH
Confidence 4444 69888 569999999999999 9999999999999999 55555 33233221 2246799999999
Q ss_pred hhcccCccchHhhh-c-CCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH-hhCCc
Q psy7952 117 SFYLRFRDDKTSIV-T-GRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV-RYNKL 193 (444)
Q Consensus 117 L~~~~q~~~~~~~l-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~-~~~~~ 193 (444)
|+ .|+.+.+ . ....++++..++|+.......... ..+++|+|+||++|. ..+..... .+.++
T Consensus 73 L~-----~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~------~~~~~Iiv~Tp~~L~----~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 73 VY-----EQNKSVFSKYFERHGYRVTGISGATAENVPVEQI------VENNDIIILTPQILV----NNLKKGTIPSLSIF 137 (696)
T ss_dssp HH-----HHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH------HHTCSEEEECHHHHH----HHHHTTSSCCGGGC
T ss_pred HH-----HHHHHHHHHHhccCCceEEEEeCCccccccHHHh------ccCCCEEEECHHHHH----HHHhcCcccccccc
Confidence 99 5555555 1 111238899999987654333222 136899999999985 22222222 46778
Q ss_pred cEEEEeccccccccCCCcHHHHHHHHH-HH-HhhCCCCcEEEEeccCC-------cchHHHHHHHhcCCC----------
Q psy7952 194 AYIVVDEAHCVSEWGHDFRPTYRRLGE-LR-QFTGNSIPIIALTATAE-------PSVKQDIISVLKFNK---------- 254 (444)
Q Consensus 194 ~~iViDE~H~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~v~lSAT~~-------~~~~~~~~~~l~~~~---------- 254 (444)
++||+||||++.+.. .+...+..... .+ ...+..+++++|||||. ....+.+...+...+
T Consensus 138 ~~vViDEaH~~~~~~-~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 216 (696)
T 2ykg_A 138 TLMIFDECHNTSKQH-PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHN 216 (696)
T ss_dssp SEEEEETGGGCSTTC-HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTT
T ss_pred cEEEEeCCCcccCcc-cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccc
Confidence 999999999987543 23322221111 11 11234588999999997 222333333321100
Q ss_pred ----------CeEEEecCCCCCCceE----------------------------------------------------EE
Q psy7952 255 ----------PYKVFKTSTFRSNLFY----------------------------------------------------DV 272 (444)
Q Consensus 255 ----------~~~~~~~~~~~~~~~~----------------------------------------------------~~ 272 (444)
+.........+....+ ..
T Consensus 217 ~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (696)
T 2ykg_A 217 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 296 (696)
T ss_dssp HHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC---
T ss_pred hHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhc
Confidence 1000000000000000 00
Q ss_pred EEc----------------------------------------------------------------------------c
Q psy7952 273 IFD----------------------------------------------------------------------------D 276 (444)
Q Consensus 273 ~~~----------------------------------------------------------------------------~ 276 (444)
... .
T Consensus 297 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 376 (696)
T 2ykg_A 297 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 376 (696)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGG
T ss_pred ccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 000 0
Q ss_pred cchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHh----------------------hcCHHHHHHHHH
Q psy7952 277 LLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR----------------------KVNKHERSRVQE 334 (444)
Q Consensus 277 ~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~----------------------~~~~~~r~~~~~ 334 (444)
....+...+.+++..... ...+.++||||+++.+++.+++.|.. .++..+|..+++
T Consensus 377 ~~~~k~~~L~~ll~~~~~--~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~ 454 (696)
T 2ykg_A 377 NENPKLEDLCFILQEEYH--LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 454 (696)
T ss_dssp GCCHHHHHHHHHHHHHHT--TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------
T ss_pred CCCHHHHHHHHHHHHHhc--cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHH
Confidence 001112222233332221 12567999999999999999999975 266789999999
Q ss_pred HHhc-CCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhH
Q psy7952 335 SFMR-GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSL 402 (444)
Q Consensus 335 ~f~~-g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~ 402 (444)
+|++ |+.+|||||+++++|||+|++++||+||+|.|...|+||+|| ||. ++|.++.+++..+....
T Consensus 455 ~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 455 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp ------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHH
T ss_pred HHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHH
Confidence 9998 999999999999999999999999999999999999999999 998 78999999988776443
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-37 Score=330.68 Aligned_cols=319 Identities=19% Similarity=0.205 Sum_probs=224.4
Q ss_pred HHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcc
Q psy7952 41 KALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYL 120 (444)
Q Consensus 41 ~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~ 120 (444)
...|+|+ ++++|.++++.+.++ +++++++|||+|||++ +.+++ +..+..+ .+++|++|+++|+
T Consensus 80 ~~~~~f~--L~~~Q~eai~~l~~g-~~vLV~apTGSGKTlv--------a~lai-~~~l~~g---~rvL~l~PtkaLa-- 142 (1010)
T 2xgj_A 80 ARTYPFT--LDPFQDTAISCIDRG-ESVLVSAHTSAGKTVV--------AEYAI-AQSLKNK---QRVIYTSPIKALS-- 142 (1010)
T ss_dssp SCCCSSC--CCHHHHHHHHHHHHT-CEEEEECCTTSCHHHH--------HHHHH-HHHHHTT---CEEEEEESSHHHH--
T ss_pred HHhCCCC--CCHHHHHHHHHHHcC-CCEEEECCCCCChHHH--------HHHHH-HHHhccC---CeEEEECChHHHH--
Confidence 3446777 468999999999998 9999999999999999 44444 2223222 4669999999999
Q ss_pred cCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEe
Q psy7952 121 RFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVD 199 (444)
Q Consensus 121 ~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViD 199 (444)
.|+.+.+ ... -.+..++|+.... .+++|+|+||+++. ..+......+.++++||+|
T Consensus 143 ---~Q~~~~l~~~~---~~vglltGd~~~~-------------~~~~IvV~Tpe~L~----~~L~~~~~~l~~l~lVViD 199 (1010)
T 2xgj_A 143 ---NQKYRELLAEF---GDVGLMTGDITIN-------------PDAGCLVMTTEILR----SMLYRGSEVMREVAWVIFD 199 (1010)
T ss_dssp ---HHHHHHHHHHH---SCEEEECSSCEEC-------------TTCSEEEEEHHHHH----HHHHHTCTTGGGEEEEEEE
T ss_pred ---HHHHHHHHHHh---CCEEEEeCCCccC-------------CCCCEEEEcHHHHH----HHHHcCcchhhcCCEEEEe
Confidence 6777777 322 1577788877643 46799999999975 3333444556789999999
Q ss_pred ccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhc--CCCCeEEEecCCCCCCceEEEEEcc-
Q psy7952 200 EAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK--FNKPYKVFKTSTFRSNLFYDVIFDD- 276 (444)
Q Consensus 200 E~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~- 276 (444)
|+|++.+++ +...+.. ++..++.+.++|+||||+++.. .+..+++ ...+..+........++...+....
T Consensus 200 EaH~l~d~~--rg~~~e~---il~~l~~~~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~ 272 (1010)
T 2xgj_A 200 EVHYMRDKE--RGVVWEE---TIILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHG 272 (1010)
T ss_dssp TGGGGGCTT--THHHHHH---HHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTS
T ss_pred chhhhcccc--hhHHHHH---HHHhcCCCCeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCC
Confidence 999998765 3333333 3345667799999999987642 2334432 1233344333322222222211100
Q ss_pred ---------cc---hh------------------------------h--------HHHHHHHHHHHhccCCCCCceEEEE
Q psy7952 277 ---------LL---KD------------------------------S--------YAHVKEFIEKCLGKDNKANNCGIIY 306 (444)
Q Consensus 277 ---------~~---~~------------------------------~--------~~~~~~~l~~~l~~~~~~~~~~iVf 306 (444)
.. .. + ...+..++..+... ...++|||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~---~~~~~IVF 349 (1010)
T 2xgj_A 273 DGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK---KYNPVIVF 349 (1010)
T ss_dssp SCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHH---TCCSEEEE
T ss_pred cceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc---CCCCEEEE
Confidence 00 00 0 11111222222211 35689999
Q ss_pred ecccchHHHHHHHHHhh-------------------------------------------------cCHHHHHHHHHHHh
Q psy7952 307 CRTREHTTDLADALRRK-------------------------------------------------VNKHERSRVQESFM 337 (444)
Q Consensus 307 ~~s~~~~~~l~~~L~~~-------------------------------------------------~~~~~r~~~~~~f~ 337 (444)
|+++..|+.++..|... +++.+|..+++.|+
T Consensus 350 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~ 429 (1010)
T 2xgj_A 350 SFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ 429 (1010)
T ss_dssp ESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHh
Confidence 99999999998877540 77889999999999
Q ss_pred cCCccEEEEcCccccccccCCccEEEE----eCC----CCCHHHHHHHhccCCCCCC--ceeEEEEeccc-chhhHHHHH
Q psy7952 338 RGEINVITATISFGMGIDRQNVRFVVH----WGM----PSSIPAYYQESGRAGRDGL--QSYCRIYHSEH-SKKSLEYVI 406 (444)
Q Consensus 338 ~g~~~vLvaT~~~~~Gidi~~~~~Vi~----~~~----p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~-~~~~~~~~~ 406 (444)
+|.++|||||+++++|||+|++++||+ ||. |.|..+|+||+||+||.|. .|.+++++.+. +...+..+.
T Consensus 430 ~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 430 EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp TTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHH
T ss_pred cCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHH
Confidence 999999999999999999999999999 998 8899999999999999986 59999999865 556667765
Q ss_pred hhc
Q psy7952 407 KTD 409 (444)
Q Consensus 407 ~~~ 409 (444)
...
T Consensus 510 ~~~ 512 (1010)
T 2xgj_A 510 KGQ 512 (1010)
T ss_dssp SCC
T ss_pred hCC
Confidence 433
No 31
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-38 Score=330.53 Aligned_cols=344 Identities=18% Similarity=0.224 Sum_probs=235.0
Q ss_pred HHHHHHHHHhCCcccCchHHHHHHHHHHcc-----CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeE
Q psy7952 35 ELTAKLKALFGFDSFKCELQKKAIRHILLR-----THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNG 109 (444)
Q Consensus 35 ~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~-----~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vl 109 (444)
++.+.+.+.+||+ +|++|.++++.++.+ ..++++++|||+|||++ +.+++ +..+..+ .+++
T Consensus 356 ~~~~~~~~~lpf~--lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlv--------all~i-l~~l~~g---~qvl 421 (780)
T 1gm5_A 356 KLAEEFIKSLPFK--LTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVV--------AQLAI-LDNYEAG---FQTA 421 (780)
T ss_dssp HHHHHHHHHSSSC--CCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHH--------HHHHH-HHHHHHT---SCEE
T ss_pred HHHHHHHHhCCCC--CCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHH--------HHHHH-HHHHHcC---CeEE
Confidence 4555565668994 679999999998874 14899999999999999 55555 3323333 3569
Q ss_pred EEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH
Q psy7952 110 WISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL 187 (444)
Q Consensus 110 il~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~ 187 (444)
|++||++|+ .|+.+.+ .....++++..++|+....++...+..+. .+.++|+|+||+.+ ...
T Consensus 422 vlaPtr~La-----~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~--~g~~~IvVgT~~ll---------~~~ 485 (780)
T 1gm5_A 422 FMVPTSILA-----IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLR--NGQIDVVIGTHALI---------QED 485 (780)
T ss_dssp EECSCHHHH-----HHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHH--SSCCCEEEECTTHH---------HHC
T ss_pred EEeCcHHHH-----HHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECHHHH---------hhh
Confidence 999999999 5555554 11112289999999998887776666654 35699999999874 234
Q ss_pred HhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec-CCCCC
Q psy7952 188 VRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT-STFRS 266 (444)
Q Consensus 188 ~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 266 (444)
..+.++++||+||+|++... .+ ..+.....++++++|||||.+..... ...+..+ ..+... ...+.
T Consensus 486 ~~~~~l~lVVIDEaHr~g~~---qr-------~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~-~s~i~~~p~~r~ 552 (780)
T 1gm5_A 486 VHFKNLGLVIIDEQHRFGVK---QR-------EALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLD-VTVIDEMPPGRK 552 (780)
T ss_dssp CCCSCCCEEEEESCCCC---------------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSS-CEEECCCCSSCC
T ss_pred hhccCCceEEecccchhhHH---HH-------HHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcc-eeeeeccCCCCc
Confidence 56789999999999996321 11 01112233588999999998765442 2222212 122211 12222
Q ss_pred CceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccc--------hHHHHHHHHHh-h------------cC
Q psy7952 267 NLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTRE--------HTTDLADALRR-K------------VN 325 (444)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~--------~~~~l~~~L~~-~------------~~ 325 (444)
++...+. .......+.+.+.+.+ ..+++++|||++.+ .++.+++.|.+ . ++
T Consensus 553 ~i~~~~~----~~~~~~~l~~~i~~~l----~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~ 624 (780)
T 1gm5_A 553 EVQTMLV----PMDRVNEVYEFVRQEV----MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLS 624 (780)
T ss_dssp CCEECCC----CSSTHHHHHHHHHHHT----TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSC
T ss_pred ceEEEEe----ccchHHHHHHHHHHHH----hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCC
Confidence 3222111 1222334444444433 25778999999764 46778888877 2 78
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCC-CHHHHHHHhccCCCCCCceeEEEEecccch---hh
Q psy7952 326 KHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGLQSYCRIYHSEHSK---KS 401 (444)
Q Consensus 326 ~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~---~~ 401 (444)
+.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|. +...|.||+||+||.|+.|+|++++.+.+. ..
T Consensus 625 ~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~r 704 (780)
T 1gm5_A 625 QEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMER 704 (780)
T ss_dssp CSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHH
Confidence 89999999999999999999999999999999999999999986 789999999999999999999999974333 34
Q ss_pred HHHHHhhccchhHHHHHHHHhhHHHHHH
Q psy7952 402 LEYVIKTDTSTKREQLELKFKNYLSMLE 429 (444)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (444)
+..+..........+.+.++++..++..
T Consensus 705 l~~l~~~~dgf~iae~dL~~Rg~gd~lG 732 (780)
T 1gm5_A 705 LRFFTLNTDGFKIAEYDLKTRGPGEFFG 732 (780)
T ss_dssp HHHHHTCCCSHHHHHHHHHSSCCCC---
T ss_pred HHHHHhhhccchhhHhhHhccCcchhhh
Confidence 5555554445554455555554444443
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-37 Score=310.87 Aligned_cols=311 Identities=18% Similarity=0.189 Sum_probs=212.4
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhh
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
++++|.+++..++.+ ++++.+|||+|||++++ .++ ...+. +...++||++|+++|+ .++.+.
T Consensus 10 l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~--------~~~-~~~~~--~~~~~~liv~P~~~L~-----~q~~~~ 71 (494)
T 1wp9_A 10 PRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAM--------MIA-EYRLT--KYGGKVLMLAPTKPLV-----LQHAES 71 (494)
T ss_dssp CCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHH--------HHH-HHHHH--HSCSCEEEECSSHHHH-----HHHHHH
T ss_pred ccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHH--------HHH-HHHHh--cCCCeEEEEECCHHHH-----HHHHHH
Confidence 348999999999998 89999999999999943 333 11121 2234669999999999 566666
Q ss_pred h--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccccc
Q psy7952 130 V--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEW 207 (444)
Q Consensus 130 l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~ 207 (444)
+ ..+.+...+..++|+.......... .+++|+|+||+.+. ..+........++++||+||||++.+.
T Consensus 72 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~-------~~~~ivv~T~~~l~----~~~~~~~~~~~~~~~vIiDEaH~~~~~ 140 (494)
T 1wp9_A 72 FRRLFNLPPEKIVALTGEKSPEERSKAW-------ARAKVIVATPQTIE----NDLLAGRISLEDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp HHHHBCSCGGGEEEECSCSCHHHHHHHH-------HHCSEEEECHHHHH----HHHHTTSCCTTSCSEEEEETGGGCSTT
T ss_pred HHHHhCcchhheEEeeCCcchhhhhhhc-------cCCCEEEecHHHHH----HHHhcCCcchhhceEEEEECCcccCCC
Confidence 6 2342335889999988766544333 25799999999975 222333345678999999999998653
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcch--HHHHHHHhcCCCCeEEEecCCCCC---------CceEEEEEcc
Q psy7952 208 GHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSV--KQDIISVLKFNKPYKVFKTSTFRS---------NLFYDVIFDD 276 (444)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 276 (444)
.. + ..+...+....+..++++|||||.... ...+...++.... .......+ ...+......
T Consensus 141 ~~-~----~~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (494)
T 1wp9_A 141 YA-Y----VFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHI---EYRSENSPDVRPYVKGIRFEWVRVDLP 212 (494)
T ss_dssp CH-H----HHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEE---EECCTTSTTTGGGCCCCCEEEEEECCC
T ss_pred Cc-H----HHHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhcChhee---eccCCCcHHHHHhcCCCceeEEecCCc
Confidence 21 2 233333334455689999999998432 2223333332211 11110000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy7952 277 -------------------------------------------------------------------------------- 276 (444)
Q Consensus 277 -------------------------------------------------------------------------------- 276 (444)
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (494)
T 1wp9_A 213 EIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQ 292 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred -----------------------------------------------cchhhHHHHHHHHHHHhccCCCCCceEEEEecc
Q psy7952 277 -----------------------------------------------LLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRT 309 (444)
Q Consensus 277 -----------------------------------------------~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s 309 (444)
....+...+.+.+...... ..+.++||||++
T Consensus 293 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~--~~~~k~lVF~~~ 370 (494)
T 1wp9_A 293 GLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR--KQNSKIIVFTNY 370 (494)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH--CTTCCEEEECSC
T ss_pred cHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc--CCCCeEEEEEcc
Confidence 0001111222222222211 258899999999
Q ss_pred cchHHHHHHHHHhh------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCH
Q psy7952 310 REHTTDLADALRRK------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSI 371 (444)
Q Consensus 310 ~~~~~~l~~~L~~~------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~ 371 (444)
+..++.+++.|... ++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|.
T Consensus 371 ~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~ 450 (494)
T 1wp9_A 371 RETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSA 450 (494)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCH
Confidence 99999999999864 356789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCceeEEEEecccchh
Q psy7952 372 PAYYQESGRAGRDGLQSYCRIYHSEHSKK 400 (444)
Q Consensus 372 ~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 400 (444)
..|+||+||+||.|+ |.++.++.+++.+
T Consensus 451 ~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 451 IRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp HHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred HHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 999999999999998 9999999877654
No 33
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.4e-37 Score=343.72 Aligned_cols=366 Identities=15% Similarity=0.195 Sum_probs=250.3
Q ss_pred HHHHHh--CCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhh
Q psy7952 39 KLKALF--GFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILS 116 (444)
Q Consensus 39 ~l~~~~--g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~ 116 (444)
.++.+| +|+. .+++|.++++.++.++++++++||||+|||++|.+ ++ ++.+... ...+++|++|+++
T Consensus 915 ~~e~l~~~~f~~-fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliael--------ai-l~~l~~~-~~~kavyi~P~ra 983 (1724)
T 4f92_B 915 AFESLYQDKFPF-FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEF--------AI-LRMLLQS-SEGRCVYITPMEA 983 (1724)
T ss_dssp HHHTTTTTTCSB-CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHH--------HH-HHHHHHC-TTCCEEEECSCHH
T ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHH--------HH-HHHHHhC-CCCEEEEEcChHH
Confidence 445444 6777 56999999999998878999999999999999544 43 2223322 2346799999999
Q ss_pred hhcccCccchHhhh--cCC-CCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH---Hhh
Q psy7952 117 SFYLRFRDDKTSIV--TGR-SDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL---VRY 190 (444)
Q Consensus 117 L~~~~q~~~~~~~l--~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~---~~~ 190 (444)
|+ .|.++.+ .++ ..++++..++|+...... .. .+++|+|+|||++ +.+.+.. ..+
T Consensus 984 La-----~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~--~~-------~~~~IiV~TPEkl-----d~llr~~~~~~~l 1044 (1724)
T 4f92_B 984 LA-----EQVYMDWYEKFQDRLNKKVVLLTGETSTDLK--LL-------GKGNIIISTPEKW-----DILSRRWKQRKNV 1044 (1724)
T ss_dssp HH-----HHHHHHHHHHHTTTSCCCEEECCSCHHHHHH--HH-------HHCSEEEECHHHH-----HHHHTTTTTCHHH
T ss_pred HH-----HHHHHHHHHHhchhcCCEEEEEECCCCcchh--hc-------CCCCEEEECHHHH-----HHHHhCccccccc
Confidence 99 6666666 222 123889999987654322 11 2579999999996 3334332 235
Q ss_pred CCccEEEEeccccccccC-CCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCc-
Q psy7952 191 NKLAYIVVDEAHCVSEWG-HDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNL- 268 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 268 (444)
.++++||+||+|.+.+.. ..+...+..+..+....+++.|+|+||||+++ .+++.+|++.............||..
T Consensus 1045 ~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N--~~dla~WL~~~~~~~~~~~~~~RPvpL 1122 (1724)
T 4f92_B 1045 QNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN--AKDVAHWLGCSATSTFNFHPNVRPVPL 1122 (1724)
T ss_dssp HSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT--HHHHHHHHTCCSTTEEECCGGGCSSCE
T ss_pred ceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC--HHHHHHHhCCCCCCeEEeCCCCCCCCe
Confidence 689999999999986532 11222233333444455667999999999976 46788999876554444444455542
Q ss_pred eEEEEEcccchh--hHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----------------------
Q psy7952 269 FYDVIFDDLLKD--SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------------------- 323 (444)
Q Consensus 269 ~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------------------- 323 (444)
...+........ ........+...+... ..++++||||+|+..|+.++..|...
T Consensus 1123 ~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~ 1201 (1724)
T 4f92_B 1123 ELHIQGFNISHTQTRLLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLE 1201 (1724)
T ss_dssp EEEEEEECCCSHHHHHHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHT
T ss_pred EEEEEeccCCCchhhhhhhcchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHh
Confidence 222222221111 1111111111112111 25789999999999999988776432
Q ss_pred ---------------------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEE----eC------CCCCHH
Q psy7952 324 ---------------------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVH----WG------MPSSIP 372 (444)
Q Consensus 324 ---------------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~----~~------~p~s~~ 372 (444)
+++.+|..+++.|++|.++|||||+++++|||+|...+||. |+ .|.+..
T Consensus 1202 ~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~ 1281 (1724)
T 4f92_B 1202 KLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIY 1281 (1724)
T ss_dssp TCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHH
T ss_pred hcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHH
Confidence 88999999999999999999999999999999999888883 22 356899
Q ss_pred HHHHHhccCCCCCC--ceeEEEEecccchhhHHHHHhhccchhHH-----------HHHH-HHhhHHHHHHHhhhceee
Q psy7952 373 AYYQESGRAGRDGL--QSYCRIYHSEHSKKSLEYVIKTDTSTKRE-----------QLEL-KFKNYLSMLEYCEQGYFL 437 (444)
Q Consensus 373 ~~~Qr~GR~~R~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~ 437 (444)
+|.||+|||||.|. .|.+++++.+.+...+++++..+.+.+.. ++-. .+.+..+.++|....|+.
T Consensus 1282 ~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~ 1360 (1724)
T 4f92_B 1282 DVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLY 1360 (1724)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHH
T ss_pred HHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHH
Confidence 99999999999986 69999999999999999998776654311 1111 134556666776666553
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.7e-38 Score=329.17 Aligned_cols=324 Identities=15% Similarity=0.155 Sum_probs=200.2
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC---CccceeEEEcchhhhhcccCccch
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG---NVRSRNGWISPILSSFYLRFRDDK 126 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~---~~~~~vlil~P~~~L~~~~q~~~~ 126 (444)
++++|.++++.+++| +++++.+|||+|||++ |.+|+ +..+... +...++||++|+++|+ .|+
T Consensus 8 l~~~Q~~~i~~il~g-~~~ll~~~TGsGKTl~--------~~~~i-~~~l~~~~~~~~~~~vlvl~P~~~L~-----~Q~ 72 (699)
T 4gl2_A 8 LRPYQMEVAQPALEG-KNIIICLPTGCGKTRV--------AVYIA-KDHLDKKKKASEPGKVIVLVNKVLLV-----EQL 72 (699)
T ss_dssp CCHHHHHHHHHHHSS-CCEEECCCTTSCHHHH--------HHHHH-HHHHHHHHHHTCCCCBCCEESCSHHH-----HHH
T ss_pred ccHHHHHHHHHHHhC-CCEEEEcCCCCcHHHH--------HHHHH-HHHHHhccccCCCCeEEEEECCHHHH-----HHH
Confidence 458999999999998 8999999999999999 66665 3323222 1224679999999999 566
Q ss_pred -Hhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHH--HHHHHhhCCccEEEEeccc
Q psy7952 127 -TSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYL--LQHLVRYNKLAYIVVDEAH 202 (444)
Q Consensus 127 -~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~~~~~~~~~~~iViDE~H 202 (444)
.+.+ ......+.+..++|+........... +.++|+|+||++|........ ......+.++++||+||||
T Consensus 73 ~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH 146 (699)
T 4gl2_A 73 FRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV------KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH 146 (699)
T ss_dssp HHHTHHHHHTTTSCEEEEC----CCCCHHHHH------HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGG
T ss_pred HHHHHHHHcCcCceEEEEeCCcchhhHHHhhh------cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECcc
Confidence 5555 22222378999999876554333221 478999999999852111000 1222356789999999999
Q ss_pred cccccCCCcHHHHHHHHH-HHHhhC---------CCCcEEEEeccCCcc-------hHHHHHHHhcCCCCeEEEecC---
Q psy7952 203 CVSEWGHDFRPTYRRLGE-LRQFTG---------NSIPIIALTATAEPS-------VKQDIISVLKFNKPYKVFKTS--- 262 (444)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~-~~~~~~---------~~~~~v~lSAT~~~~-------~~~~~~~~l~~~~~~~~~~~~--- 262 (444)
++...+ .+......+.. .+.... +.+++++|||||... ..+.+......-+...+....
T Consensus 147 ~~~~~~-~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~ 225 (699)
T 4gl2_A 147 HTNKEA-VYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENL 225 (699)
T ss_dssp GCBTTB-SSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTH
T ss_pred ccCccc-hHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCch
Confidence 985422 23333332211 111111 447899999999974 223333222111110000000
Q ss_pred ------CCCCCceEEEEEcccc----------------------------------------------------------
Q psy7952 263 ------TFRSNLFYDVIFDDLL---------------------------------------------------------- 278 (444)
Q Consensus 263 ------~~~~~~~~~~~~~~~~---------------------------------------------------------- 278 (444)
..++...+........
T Consensus 226 ~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (699)
T 4gl2_A 226 DQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLR 305 (699)
T ss_dssp HHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHH
T ss_pred HHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0112222221110000
Q ss_pred --------------------------------------------------------------------------hhhHHH
Q psy7952 279 --------------------------------------------------------------------------KDSYAH 284 (444)
Q Consensus 279 --------------------------------------------------------------------------~~~~~~ 284 (444)
..+...
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~ 385 (699)
T 4gl2_A 306 KYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTK 385 (699)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 000001
Q ss_pred HHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------------------------cCHHHHHHHHHHHhcCC
Q psy7952 285 VKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------------------------VNKHERSRVQESFMRGE 340 (444)
Q Consensus 285 ~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------------------------~~~~~r~~~~~~f~~g~ 340 (444)
+.+.+....... ..+.++||||+++++++.+++.|... ++..+|..+++.|++|+
T Consensus 386 L~~~L~~~~~~~-~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~ 464 (699)
T 4gl2_A 386 LRNTIMEQYTRT-EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK 464 (699)
T ss_dssp SHHHHHHHHHHS-SSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHhcC-CCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC
Confidence 111222211111 01789999999999999999999864 78899999999999999
Q ss_pred ccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccc
Q psy7952 341 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 398 (444)
Q Consensus 341 ~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 398 (444)
.+|||||+++++|||+|++++||++|+|+|...|+||+|||||.| +.++++...++
T Consensus 465 ~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 465 INLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp -CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred CcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 999999999999999999999999999999999999999987665 44444444443
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=7.1e-37 Score=326.47 Aligned_cols=326 Identities=20% Similarity=0.201 Sum_probs=224.9
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcc
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISP 113 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P 113 (444)
.++...+...|+|+. +++|.++++.+++| +++++.+|||+|||++ |.+++ ...+..+ .+++|++|
T Consensus 26 ~~l~~~~~~~~~f~l--~~~Q~~aI~~il~g-~~vlv~apTGsGKTlv--------~~~~i-~~~~~~g---~~vlvl~P 90 (997)
T 4a4z_A 26 DELIPNPARSWPFEL--DTFQKEAVYHLEQG-DSVFVAAHTSAGKTVV--------AEYAI-AMAHRNM---TKTIYTSP 90 (997)
T ss_dssp HHHCSSCSCCCSSCC--CHHHHHHHHHHHTT-CEEEEECCTTSCSHHH--------HHHHH-HHHHHTT---CEEEEEES
T ss_pred hhhhHhHHHhCCCCC--CHHHHHHHHHHHcC-CCEEEEECCCCcHHHH--------HHHHH-HHHHhcC---CeEEEEeC
Confidence 333344555678873 68999999999999 9999999999999998 44444 2222222 35699999
Q ss_pred hhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCc
Q psy7952 114 ILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKL 193 (444)
Q Consensus 114 ~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~ 193 (444)
+++|+ .|+++.+...+..+.+..++|+... ...++|+|+||+++. ..+......+.++
T Consensus 91 traLa-----~Q~~~~l~~~~~~~~v~~l~G~~~~-------------~~~~~IlV~Tpe~L~----~~l~~~~~~l~~l 148 (997)
T 4a4z_A 91 IKALS-----NQKFRDFKETFDDVNIGLITGDVQI-------------NPDANCLIMTTEILR----SMLYRGADLIRDV 148 (997)
T ss_dssp CGGGH-----HHHHHHHHTTC--CCEEEECSSCEE-------------CTTSSEEEEEHHHHH----HHHHHTCSGGGGE
T ss_pred CHHHH-----HHHHHHHHHHcCCCeEEEEeCCCcc-------------CCCCCEEEECHHHHH----HHHHhCchhhcCC
Confidence 99999 7778877332223789999998754 356899999999985 3333444456789
Q ss_pred cEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcC--CCCeEEEecCCCCCCceEE
Q psy7952 194 AYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKF--NKPYKVFKTSTFRSNLFYD 271 (444)
Q Consensus 194 ~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~ 271 (444)
++||+||+|++.+++. ...+..+ ...++.+.++|++|||+++.. .+.++++. .....+........++.+.
T Consensus 149 ~lvViDEaH~l~d~~~--g~~~e~i---i~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~ 221 (997)
T 4a4z_A 149 EFVIFDEVHYVNDQDR--GVVWEEV---IIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEIN 221 (997)
T ss_dssp EEEEECCTTCCCTTCT--TCCHHHH---HHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEE
T ss_pred CEEEEECcccccccch--HHHHHHH---HHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEE
Confidence 9999999999988763 3333333 334666799999999997643 45566542 1333333333322232222
Q ss_pred EEEcccc-----------hhh-----------------------------------------------------------
Q psy7952 272 VIFDDLL-----------KDS----------------------------------------------------------- 281 (444)
Q Consensus 272 ~~~~~~~-----------~~~----------------------------------------------------------- 281 (444)
+...... ...
T Consensus 222 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~ 301 (997)
T 4a4z_A 222 IWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSR 301 (997)
T ss_dssp EEETTEEEEEECTTCCBCHHHHHHHHHHHC--------------------------------------------------
T ss_pred EecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2110000 000
Q ss_pred ------------------HHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHh---------------------
Q psy7952 282 ------------------YAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR--------------------- 322 (444)
Q Consensus 282 ------------------~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~--------------------- 322 (444)
.......+...+... ...++||||++++.|+.++..|..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 379 (997)
T 4a4z_A 302 GAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSIT 379 (997)
T ss_dssp ---------------CCCCTTHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 000111222223222 457999999999999999988843
Q ss_pred ---------------------h-------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCC-----
Q psy7952 323 ---------------------K-------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS----- 369 (444)
Q Consensus 323 ---------------------~-------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~----- 369 (444)
. +++.+|..+++.|++|.++|||||+++++|+|+|+ ..||+++.|+
T Consensus 380 ~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~ 458 (997)
T 4a4z_A 380 RLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNG 458 (997)
T ss_dssp TSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTE
T ss_pred hcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCcc
Confidence 0 78999999999999999999999999999999999 6666666655
Q ss_pred ----CHHHHHHHhccCCCCC--CceeEEEEec--ccchhhHHHHH
Q psy7952 370 ----SIPAYYQESGRAGRDG--LQSYCRIYHS--EHSKKSLEYVI 406 (444)
Q Consensus 370 ----s~~~~~Qr~GR~~R~g--~~g~~~~~~~--~~~~~~~~~~~ 406 (444)
|..+|+||+||+||.| ..|.+++++. ..+...+..++
T Consensus 459 ~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i 503 (997)
T 4a4z_A 459 LRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVT 503 (997)
T ss_dssp EEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHH
T ss_pred CCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHh
Confidence 9999999999999998 5688888773 33555555553
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-36 Score=324.80 Aligned_cols=322 Identities=14% Similarity=0.179 Sum_probs=181.0
Q ss_pred hCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC--ccceeEEEcchhhhhccc
Q psy7952 44 FGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN--VRSRNGWISPILSSFYLR 121 (444)
Q Consensus 44 ~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~--~~~~vlil~P~~~L~~~~ 121 (444)
+|+.. |+++|.++++.++.| +++++.+|||+|||++ +.+|+ +..+.... ...++||++|+++|+
T Consensus 244 ~~~~~-~r~~Q~~ai~~il~g-~~~ll~a~TGsGKTl~--------~~~~i-~~~l~~~~~~~~~~vLvl~Pt~~L~--- 309 (936)
T 4a2w_A 244 YETKK-ARSYQIELAQPAING-KNALICAPTGSGKTFV--------SILIC-EHHFQNMPAGRKAKVVFLATKVPVY--- 309 (936)
T ss_dssp ----C-CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHH--------HHHHH-HTTTTTCCSSCCCCEEEECSSHHHH---
T ss_pred cCCCC-CCHHHHHHHHHHHcC-CCEEEEeCCCchHHHH--------HHHHH-HHHHHhccccCCCeEEEEeCCHHHH---
Confidence 45666 569999999999999 9999999999999999 55555 33333321 145679999999999
Q ss_pred CccchHhhh-----cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH-hhCCccE
Q psy7952 122 FRDDKTSIV-----TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV-RYNKLAY 195 (444)
Q Consensus 122 q~~~~~~~l-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~-~~~~~~~ 195 (444)
.|+...+ ..+ +++..++|+.........+ ..+++|+|+||+++. ..+..... .+.++++
T Consensus 310 --~Q~~~~~~~~~~~~~---~~v~~~~G~~~~~~~~~~~------~~~~~IvI~Tp~~L~----~~l~~~~~~~l~~~~l 374 (936)
T 4a2w_A 310 --EQQKNVFKHHFERQG---YSVQGISGENFSNVSVEKV------IEDSDIIVVTPQILV----NSFEDGTLTSLSIFTL 374 (936)
T ss_dssp --HHHHHHHHHHHHTTT---CCEEEECCC-----CCHHH------HHHCSEEEECHHHHH----HHHHSSSCCCGGGCSE
T ss_pred --HHHHHHHHHHhcccC---ceEEEEECCcchhhHHHHh------ccCCCEEEecHHHHH----HHHHcCccccccCCCE
Confidence 4555444 235 8999999988654432222 135799999999974 22222222 3567899
Q ss_pred EEEeccccccccCCCcHHHHHHHHHH-HHhhCCCCcEEEEeccCCcch-------HHHH---HHHhcCCCCeEEEecC--
Q psy7952 196 IVVDEAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSV-------KQDI---ISVLKFNKPYKVFKTS-- 262 (444)
Q Consensus 196 iViDE~H~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~v~lSAT~~~~~-------~~~~---~~~l~~~~~~~~~~~~-- 262 (444)
||+||||++...+. +...+..+... ........+++++||||.... .+.+ ...++.. .+....
T Consensus 375 iViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~---~i~~~~~~ 450 (936)
T 4a2w_A 375 MIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ---AISTVREN 450 (936)
T ss_dssp EEEETGGGCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS---EEECCCSS
T ss_pred EEEECccccCCCcc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc---eeeccccc
Confidence 99999999876542 33333222211 111144578999999996421 1111 2222110 011000
Q ss_pred -------CCCCCceEEEEEc------------------------------------ccchh-------------------
Q psy7952 263 -------TFRSNLFYDVIFD------------------------------------DLLKD------------------- 280 (444)
Q Consensus 263 -------~~~~~~~~~~~~~------------------------------------~~~~~------------------- 280 (444)
..++...+..... .....
T Consensus 451 ~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~ 530 (936)
T 4a2w_A 451 IQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE 530 (936)
T ss_dssp HHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhccc
Confidence 0111111110000 00000
Q ss_pred ------------------------------------h-------------------------------------------
Q psy7952 281 ------------------------------------S------------------------------------------- 281 (444)
Q Consensus 281 ------------------------------------~------------------------------------------- 281 (444)
.
T Consensus 531 ~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~ 610 (936)
T 4a2w_A 531 DKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETN 610 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 0
Q ss_pred HHHHHHHHHHHhccC--CCCCceEEEEecccchHHHHHHHHHhh----------------------cCHHHHHHHHHHHh
Q psy7952 282 YAHVKEFIEKCLGKD--NKANNCGIIYCRTREHTTDLADALRRK----------------------VNKHERSRVQESFM 337 (444)
Q Consensus 282 ~~~~~~~l~~~l~~~--~~~~~~~iVf~~s~~~~~~l~~~L~~~----------------------~~~~~r~~~~~~f~ 337 (444)
.......+.+++... ...+.++||||+++.+++.+++.|... ++..+|..++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 000111122222221 135789999999999999999999864 78889999999999
Q ss_pred c-CCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchh
Q psy7952 338 R-GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 400 (444)
Q Consensus 338 ~-g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 400 (444)
+ |+.+|||||+++++|||+|++++||+||+|+|...|+||+|| ||. ..|.++.++...+..
T Consensus 691 ~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp ---CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred ccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 8 999999999999999999999999999999999999999999 999 778889998876554
No 37
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=6.2e-38 Score=337.50 Aligned_cols=325 Identities=19% Similarity=0.224 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
..++.+.+.+.+|+. | ++|.++++.+++| +++++.+|||+|||+. .+|+ +..+.. ..++++|++
T Consensus 43 ~~~~~~~~~~~~g~~--p-~iQ~~ai~~il~g-~dvlv~apTGSGKTl~---------~lp~-l~~~~~--~~~~~lil~ 106 (1054)
T 1gku_B 43 LKEFVEFFRKCVGEP--R-AIQKMWAKRILRK-ESFAATAPTGVGKTSF---------GLAM-SLFLAL--KGKRCYVIF 106 (1054)
T ss_dssp HHHHHHHHHTTTCSC--C-HHHHHHHHHHHTT-CCEECCCCBTSCSHHH---------HHHH-HHHHHT--TSCCEEEEE
T ss_pred hHHHHHHHHHhcCCC--H-HHHHHHHHHHHhC-CCEEEEcCCCCCHHHH---------HHHH-HHHHhh--cCCeEEEEe
Confidence 345667777778999 5 8999999999999 9999999999999953 3344 221222 234669999
Q ss_pred chhhhhcccCccchHhhh--cCCCCce----eEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 113 PILSSFYLRFRDDKTSIV--TGRSDLY----QLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l--~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
||++|+ .|+.+.++.+ ..+ + .+..++|+.....+......+ .. ++|+|+||++|.. .
T Consensus 107 PtreLa--~Q~~~~l~~l~~~~~---i~~~~~v~~~~Gg~~~~~~~~~~~~l---~~-~~IlV~TP~~L~~--------~ 169 (1054)
T 1gku_B 107 PTSLLV--IQAAETIRKYAEKAG---VGTENLIGYYHGRIPKREKENFMQNL---RN-FKIVITTTQFLSK--------H 169 (1054)
T ss_dssp SCHHHH--HHHHHHHHHHHTTTC---CSGGGSEEECCSSCCSHHHHHHHHSG---GG-CSEEEEEHHHHHH--------C
T ss_pred ccHHHH--HHHHHHHHHHHhhcC---CCccceEEEEeCCCChhhHHHHHhhc---cC-CCEEEEcHHHHHH--------H
Confidence 999999 3334444444 223 6 789999998877654444333 23 8999999999742 2
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHH----HHHhhCCCCcEEEEeccCCcchHH----HHHHHhcCCCCeEE
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE----LRQFTGNSIPIIALTATAEPSVKQ----DIISVLKFNKPYKV 258 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~v~lSAT~~~~~~~----~~~~~l~~~~~~~~ 258 (444)
...+.++++||+||+|++.++++.++..+..+.. .....+...+++++|||+++. .. .+....... +
T Consensus 170 l~~L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~----v 244 (1054)
T 1gku_B 170 YRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFD----I 244 (1054)
T ss_dssp STTSCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCC----C
T ss_pred HHHhccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEE----c
Confidence 2226689999999999998876444433332210 001113457899999999876 31 222222211 1
Q ss_pred EecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----cCHHHHHHHHH
Q psy7952 259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----VNKHERSRVQE 334 (444)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----~~~~~r~~~~~ 334 (444)
........++...+.. ..+...+.+++. . .++++||||++++.|+.++..|... .-...+..+++
T Consensus 245 ~~~~~~~~~i~~~~~~----~~k~~~L~~ll~----~---~~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~~~~l~ 313 (1054)
T 1gku_B 245 GSSRITVRNVEDVAVN----DESISTLSSILE----K---LGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYE 313 (1054)
T ss_dssp SCCEECCCCEEEEEES----CCCTTTTHHHHT----T---SCSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHH
T ss_pred cCcccCcCCceEEEec----hhHHHHHHHHHh----h---cCCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccHHHHHH
Confidence 1111122333333331 222223333332 2 2578999999999999999999864 11123468899
Q ss_pred HHhcCCccEEEE----cCccccccccCCc-cEEEEeCCC-----------------------------------------
Q psy7952 335 SFMRGEINVITA----TISFGMGIDRQNV-RFVVHWGMP----------------------------------------- 368 (444)
Q Consensus 335 ~f~~g~~~vLva----T~~~~~Gidi~~~-~~Vi~~~~p----------------------------------------- 368 (444)
.|++|+.+|||| |+++++|+|+|+| ++||++|.|
T Consensus 314 ~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (1054)
T 1gku_B 314 KFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHI 393 (1054)
T ss_dssp HHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCH
T ss_pred HHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999995 999999999
Q ss_pred ------------------------------CCHHHHHHHhccCCCCCCce--eEEEEecccchhhHHHHH
Q psy7952 369 ------------------------------SSIPAYYQESGRAGRDGLQS--YCRIYHSEHSKKSLEYVI 406 (444)
Q Consensus 369 ------------------------------~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~~~~~~~~~~ 406 (444)
.|..+|+||+||+||.|.+| .+++++..++...+..+.
T Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~ 463 (1054)
T 1gku_B 394 DEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFI 463 (1054)
T ss_dssp HHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHH
Confidence 79999999999999987765 367776666665554443
No 38
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=8e-36 Score=303.37 Aligned_cols=316 Identities=15% Similarity=0.138 Sum_probs=214.2
Q ss_pred HHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 39 KLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 39 ~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
+.++.+|+ . ||++|..+++.+++| + +..++||+|||++ |.+|+++..+ . .+.++|++||++|+
T Consensus 75 a~~r~lG~-~-pt~VQ~~~ip~ll~G-~--Iaea~TGeGKTla--------f~LP~~l~aL-~---g~~vlVltptreLA 137 (844)
T 1tf5_A 75 ASRRVTGM-F-PFKVQLMGGVALHDG-N--IAEMKTGEGKTLT--------STLPVYLNAL-T---GKGVHVVTVNEYLA 137 (844)
T ss_dssp HHHHHHSC-C-CCHHHHHHHHHHHTT-S--EEECCTTSCHHHH--------HHHHHHHHHT-T---SSCEEEEESSHHHH
T ss_pred HHHHHcCC-C-CcHHHHHhhHHHhCC-C--EEEccCCcHHHHH--------HHHHHHHHHH-c---CCCEEEEeCCHHHH
Confidence 44456799 4 789999999999999 5 8999999999999 7788722222 2 23569999999999
Q ss_pred cccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH------Hhh
Q psy7952 119 YLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL------VRY 190 (444)
Q Consensus 119 ~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~------~~~ 190 (444)
.|+.+.+..+ ..+ +++..+.|+.+...+...+ +++|+|+||+.|. |+.+..+. ...
T Consensus 138 --~qd~e~~~~l~~~lg---l~v~~i~gg~~~~~r~~~~--------~~dIv~gTpgrlg---fD~L~D~m~~~~~~l~l 201 (844)
T 1tf5_A 138 --SRDAEQMGKIFEFLG---LTVGLNLNSMSKDEKREAY--------AADITYSTNNELG---FDYLRDNMVLYKEQMVQ 201 (844)
T ss_dssp --HHHHHHHHHHHHHTT---CCEEECCTTSCHHHHHHHH--------HSSEEEEEHHHHH---HHHHHHTTCSSGGGCCC
T ss_pred --HHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHHhc--------CCCEEEECchhhh---HHHHHHhhhcchhhhcc
Confidence 4556667776 567 9999999998765443322 5799999999984 34444443 234
Q ss_pred CCccEEEEecccccc-ccCCC----------cHHHHHHHHHHHHhhC---------CCCcEE-----------------E
Q psy7952 191 NKLAYIVVDEAHCVS-EWGHD----------FRPTYRRLGELRQFTG---------NSIPII-----------------A 233 (444)
Q Consensus 191 ~~~~~iViDE~H~~~-~~~~~----------~~~~~~~l~~~~~~~~---------~~~~~v-----------------~ 233 (444)
..+.++|+||||.++ +.+.. -...+..+..+...++ +..+++ +
T Consensus 202 r~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~L 281 (844)
T 1tf5_A 202 RPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNL 281 (844)
T ss_dssp CCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCT
T ss_pred cCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCcccc
Confidence 688999999999986 54311 0123334444444443 123443 5
Q ss_pred EeccCC--------------------------------------------------------------------------
Q psy7952 234 LTATAE-------------------------------------------------------------------------- 239 (444)
Q Consensus 234 lSAT~~-------------------------------------------------------------------------- 239 (444)
+|||.+
T Consensus 282 fsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q 361 (844)
T 1tf5_A 282 FDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQ 361 (844)
T ss_dssp TSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHH
T ss_pred CCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHH
Confidence 555533
Q ss_pred -----------------cchHHHHHHHhcCCCCeEEEecCCCCCCceEE---EEEcccchhhHHHHHHHHHHHhccCCCC
Q psy7952 240 -----------------PSVKQDIISVLKFNKPYKVFKTSTFRSNLFYD---VIFDDLLKDSYAHVKEFIEKCLGKDNKA 299 (444)
Q Consensus 240 -----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 299 (444)
.. ...+.+..++. .+. -+..++.+... .... ....+...+.+.+..... .
T Consensus 362 ~~fr~y~kl~GmTGTa~te-~~e~~~iY~l~---vv~-IPtn~p~~r~d~~d~v~~-~~~~K~~al~~~i~~~~~----~ 431 (844)
T 1tf5_A 362 NYFRMYEKLAGMTGTAKTE-EEEFRNIYNMQ---VVT-IPTNRPVVRDDRPDLIYR-TMEGKFKAVAEDVAQRYM----T 431 (844)
T ss_dssp HHHTTSSEEEEEESCCGGG-HHHHHHHHCCC---EEE-CCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHhhhccCCcccchh-HHHHHHHhCCc---eEE-ecCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHh----c
Confidence 21 11222222211 111 12233333221 1222 233445555555543211 3
Q ss_pred CceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccC--------CccE
Q psy7952 300 NNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQ--------NVRF 361 (444)
Q Consensus 300 ~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~--------~~~~ 361 (444)
+.++||||+|++.++.++..|.+. +...++..+.+.++. ..|+|||+++++|+||+ ++.+
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~VlIATdmAgRG~DI~l~~~V~~~ggl~ 509 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GAVTIATNMAGRGTDIKLGEGVKELGGLA 509 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TCEEEEETTSSTTCCCCCCTTSGGGTSEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--CeEEEeCCccccCcCccccchhhhcCCcE
Confidence 678999999999999999999887 334444444444443 57999999999999999 7889
Q ss_pred EEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 362 VVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 362 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
||+++.|.|.+.|.||+||+||.|.+|.++.|++.+|.
T Consensus 510 VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 510 VVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred EEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 99999999999999999999999999999999987663
No 39
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2e-35 Score=297.87 Aligned_cols=297 Identities=15% Similarity=0.111 Sum_probs=203.6
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhh
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
++++|.++++.++.+ +++++++|||+|||++ ++.++ ...+...+ .++||++|+++|+ .|+.+.
T Consensus 114 l~~~Q~~ai~~~~~~-~~~ll~~~tGsGKT~~--------~~~~~-~~~~~~~~--~~vlvl~P~~~L~-----~Q~~~~ 176 (510)
T 2oca_A 114 PHWYQKDAVFEGLVN-RRRILNLPTSAGRSLI--------QALLA-RYYLENYE--GKILIIVPTTALT-----TQMADD 176 (510)
T ss_dssp CCHHHHHHHHHHHHH-SEEEEECCSTTTHHHH--------HHHHH-HHHHHHCS--SEEEEEESSHHHH-----HHHHHH
T ss_pred CCHHHHHHHHHHHhc-CCcEEEeCCCCCHHHH--------HHHHH-HHHHhCCC--CeEEEEECcHHHH-----HHHHHH
Confidence 568999999999998 8999999999999999 43333 22222221 2679999999999 566666
Q ss_pred h-cC-CCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccccc
Q psy7952 130 V-TG-RSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEW 207 (444)
Q Consensus 130 l-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~ 207 (444)
+ .+ ..+.+.+..++++...... .....+|+|+||+.+... ....+.++++||+||+|++..
T Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~I~i~T~~~l~~~-------~~~~~~~~~liIiDE~H~~~~- 239 (510)
T 2oca_A 177 FVDYRLFSHAMIKKIGGGASKDDK---------YKNDAPVVVGTWQTVVKQ-------PKEWFSQFGMMMNDECHLATG- 239 (510)
T ss_dssp HHHTTSSCGGGEEECGGGCCTTGG---------GCTTCSEEEEEHHHHTTS-------CGGGGGGEEEEEEETGGGCCH-
T ss_pred HHHhhcCCccceEEEecCCccccc---------cccCCcEEEEeHHHHhhc-------hhhhhhcCCEEEEECCcCCCc-
Confidence 6 32 2233678888887665432 246789999999987532 123456799999999999753
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHH--HHHHhcCCCCeEEEecC------CCCCCceEEEEEcccc-
Q psy7952 208 GHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQD--IISVLKFNKPYKVFKTS------TFRSNLFYDVIFDDLL- 278 (444)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~--~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~- 278 (444)
..+..++..+.+..++++|||||++..... ....++ +....... ...+...+........
T Consensus 240 --------~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 308 (510)
T 2oca_A 240 --------KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFG---EIFKPVTTSKLMEDGQVTELKINSIFLRYPD 308 (510)
T ss_dssp --------HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHC---SEECCCCCC---------CCEEEEEEEECCH
T ss_pred --------ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhC---CeEEeeCHHHHhhCCcCCCceEEEEeecCCh
Confidence 233445556666689999999997654321 122222 11111000 0111111111111000
Q ss_pred -----------hh----------hHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHH
Q psy7952 279 -----------KD----------SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKH 327 (444)
Q Consensus 279 -----------~~----------~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~ 327 (444)
.. +...+.+.+..... ..+.++||||+ .++++.+++.|.+. ++..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~ 384 (510)
T 2oca_A 309 EFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQ---KDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTE 384 (510)
T ss_dssp HHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHT---TTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHH
T ss_pred HHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHh---cCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHH
Confidence 00 11122333333322 13556666666 88999999999874 8889
Q ss_pred HHHHHHHHHhcCCccEEEEc-CccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEec
Q psy7952 328 ERSRVQESFMRGEINVITAT-ISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHS 395 (444)
Q Consensus 328 ~r~~~~~~f~~g~~~vLvaT-~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 395 (444)
+|..+++.|++|+.+||||| +++++|+|+|++++||++++|.|...|+|++||+||.|+++.++++++
T Consensus 385 ~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 385 TRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999 999999999999999999999999999999999999998875555554
No 40
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.2e-34 Score=297.02 Aligned_cols=304 Identities=16% Similarity=0.130 Sum_probs=184.0
Q ss_pred CchHHHHHHHHHHc----cCCcEEEEccCCCcccccccccccceEEeCCCccccccCC-------ccceeEEEcchhhhh
Q psy7952 50 KCELQKKAIRHILL----RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN-------VRSRNGWISPILSSF 118 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~----~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~-------~~~~vlil~P~~~L~ 118 (444)
++++|.++++.+++ +.+++++++|||+|||++|+.++ ..+...+ ..+++||++|+++|+
T Consensus 179 lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~----------~~l~~~~~~~~~~~~~~~vlil~P~~~L~ 248 (590)
T 3h1t_A 179 PRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQIS----------WKLWSARWNRTGDYRKPRILFLADRNVLV 248 (590)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH----------HHHHHTTCCSSCSSSCCCEEEEEC-----
T ss_pred chHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHH----------HHHHhcccccccccCCCeEEEEeCCHHHH
Confidence 46899999998886 54679999999999999843221 1232222 556889999999999
Q ss_pred cccCccchH-hhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEE
Q psy7952 119 YLRFRDDKT-SIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYI 196 (444)
Q Consensus 119 ~~~q~~~~~-~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~i 196 (444)
.|.. +.+ .++ ..+..+.++. ...+.+|+|+||+++.................+++|
T Consensus 249 -----~Q~~~~~~~~~~---~~~~~~~~~~--------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lv 306 (590)
T 3h1t_A 249 -----DDPKDKTFTPFG---DARHKIEGGK--------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLI 306 (590)
T ss_dssp -----------CCTTTC---SSEEECCC----------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEE
T ss_pred -----HHHHHHHHHhcc---hhhhhhhccC--------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEE
Confidence 4444 444 444 3334443322 135789999999998631100000112234568999
Q ss_pred EEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec------CCCCCCceE
Q psy7952 197 VVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT------STFRSNLFY 270 (444)
Q Consensus 197 ViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~ 270 (444)
|+||||++...+ . ..+..++..++. .++++|||||...........++. ++..... ....+...+
T Consensus 307 IiDEaH~~~~~~---~---~~~~~il~~~~~-~~~l~lTATP~~~~~~~~~~~f~~--~~~~~~~~~~i~~~~l~~~~~~ 377 (590)
T 3h1t_A 307 IIDECHRGSARD---N---SNWREILEYFEP-AFQIGMTATPLREDNRDTYRYFGN--PIYTYSLRQGIDDGFLAPYRVH 377 (590)
T ss_dssp EESCCC---------------CHHHHHHSTT-SEEEEEESSCSCTTTHHHHHHSCS--CSEEECHHHHHHHTSSCCEEEE
T ss_pred EEECCccccccc---h---HHHHHHHHhCCc-ceEEEeccccccccchhHHHHcCC--ceEecCHHHHhhCCccCCcEEE
Confidence 999999986532 0 122233344554 789999999987766665655542 2111100 000111111
Q ss_pred EEEEcc--------------------------c-------chhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHH
Q psy7952 271 DVIFDD--------------------------L-------LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLA 317 (444)
Q Consensus 271 ~~~~~~--------------------------~-------~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~ 317 (444)
.+.... . .......+.+.+.+++... ...+++||||+++++|+.++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~ 456 (590)
T 3h1t_A 378 RVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMR 456 (590)
T ss_dssp EEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHH
T ss_pred EeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHH
Confidence 111000 0 0011122233343333332 25689999999999999999
Q ss_pred HHHHhh-----------------cCHHHHHHHHHHHhcCCcc---EEEEcCccccccccCCccEEEEeCCCCCHHHHHHH
Q psy7952 318 DALRRK-----------------VNKHERSRVQESFMRGEIN---VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE 377 (444)
Q Consensus 318 ~~L~~~-----------------~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr 377 (444)
+.|.+. ..+++|..+++.|++|+.+ |||||+++++|+|+|++++||++++|.|...|+||
T Consensus 457 ~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~ 536 (590)
T 3h1t_A 457 RALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQI 536 (590)
T ss_dssp HHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHH
T ss_pred HHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHH
Confidence 999764 2234599999999998766 89999999999999999999999999999999999
Q ss_pred hccCCCCCC--ceeEEEEec
Q psy7952 378 SGRAGRDGL--QSYCRIYHS 395 (444)
Q Consensus 378 ~GR~~R~g~--~g~~~~~~~ 395 (444)
+||+||.+. ++..+++++
T Consensus 537 iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 537 VGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp HTTSCCCBGGGTBSCEEEEE
T ss_pred HhhhcccCccCCCCEEEEEe
Confidence 999999875 444444554
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.2e-35 Score=293.63 Aligned_cols=282 Identities=13% Similarity=0.054 Sum_probs=190.8
Q ss_pred CCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCcc
Q psy7952 45 GFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRD 124 (444)
Q Consensus 45 g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~ 124 (444)
|+.. |+++|+ +++.++++++.+++.+|||+|||++ |++|+ +..+...+ .+++|++||++|+ .
T Consensus 1 G~~q-~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~--------~~~~~-l~~~~~~~--~~~lvl~Ptr~La-----~ 62 (451)
T 2jlq_A 1 GSAM-GEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKR--------ILPSI-VREALLRR--LRTLILAPTRVVA-----A 62 (451)
T ss_dssp CCCC-CSCCCC-CCGGGGSTTCEEEECCCTTSSCCTT--------HHHHH-HHHHHHTT--CCEEEEESSHHHH-----H
T ss_pred CCCC-CCCcHH-HHHHHHhcCCeEEEECCCCCCHhhH--------HHHHH-HHHHHhcC--CcEEEECCCHHHH-----H
Confidence 4554 677875 7999999844459999999999998 66666 22222222 4569999999999 5
Q ss_pred chHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccc
Q psy7952 125 DKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204 (444)
Q Consensus 125 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~ 204 (444)
|..+.+. + ..+..-....... ..++..|.++|++.+. +. +.....+.++++||+||+|++
T Consensus 63 Q~~~~l~-g---~~v~~~~~~~~~~-----------~~~~~~i~~~t~~~l~----~~-l~~~~~l~~~~~iViDEah~~ 122 (451)
T 2jlq_A 63 EMEEALR-G---LPIRYQTPAVKSD-----------HTGREIVDLMCHATFT----TR-LLSSTRVPNYNLIVMDEAHFT 122 (451)
T ss_dssp HHHHHTT-T---SCEEECCTTCSCC-----------CCSSCCEEEEEHHHHH----HH-HHHCSCCCCCSEEEEETTTCC
T ss_pred HHHHHhc-C---ceeeeeecccccc-----------CCCCceEEEEChHHHH----HH-hhCcccccCCCEEEEeCCccC
Confidence 6666552 2 2222212111110 1345678899988763 22 223344678999999999986
Q ss_pred cccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHH
Q psy7952 205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAH 284 (444)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (444)
+.+ +......+.. .....+.++++||||+++..... . ...+..+.... ..+...+ ..
T Consensus 123 -~~~--~~~~~~~~~~--~~~~~~~~~i~~SAT~~~~~~~~----~-~~~~~~~~~~~-~~p~~~~------------~~ 179 (451)
T 2jlq_A 123 -DPC--SVAARGYIST--RVEMGEAAAIFMTATPPGSTDPF----P-QSNSPIEDIER-EIPERSW------------NT 179 (451)
T ss_dssp -SHH--HHHHHHHHHH--HHHTTSCEEEEECSSCTTCCCSS----C-CCSSCEEEEEC-CCCSSCC------------SS
T ss_pred -Ccc--hHHHHHHHHH--hhcCCCceEEEEccCCCccchhh----h-cCCCceEecCc-cCCchhh------------HH
Confidence 221 2222222211 12344589999999998754331 1 11222221111 1111000 11
Q ss_pred HHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCC
Q psy7952 285 VKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------VNKHERSRVQESFMRGEINVITATISFGMGIDRQN 358 (444)
Q Consensus 285 ~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 358 (444)
+...+.+ ..+++||||+++++++.++..|.+. ++...+..+++.|++|+.+|||||+++++|+|+|+
T Consensus 180 ~~~~l~~-------~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~v~~~GiDip~ 252 (451)
T 2jlq_A 180 GFDWITD-------YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRA 252 (451)
T ss_dssp SCHHHHH-------CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEECGGGGSSCCCCC
T ss_pred HHHHHHh-------CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhccCCceEEEECCHHHhCcCCCC
Confidence 1122222 3668999999999999999999876 66677789999999999999999999999999999
Q ss_pred ccEEEEeC--------------------CCCCHHHHHHHhccCCCCCC-ceeEEEEec
Q psy7952 359 VRFVVHWG--------------------MPSSIPAYYQESGRAGRDGL-QSYCRIYHS 395 (444)
Q Consensus 359 ~~~Vi~~~--------------------~p~s~~~~~Qr~GR~~R~g~-~g~~~~~~~ 395 (444)
++||++| .|.|..+|+||+||+||.|. +|.+++++.
T Consensus 253 -~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 253 -GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp -SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred -CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 9999998 99999999999999999998 788888874
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.4e-35 Score=293.35 Aligned_cols=286 Identities=17% Similarity=0.112 Sum_probs=196.1
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhh
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
++++|.++++.++.+ +++++++|||+|||++ ++.++ ...+ .++||++|+++|+ .|..+.
T Consensus 94 l~~~Q~~ai~~i~~~-~~~ll~~~TGsGKT~~--------~l~~i----~~~~---~~~Lvl~P~~~L~-----~Q~~~~ 152 (472)
T 2fwr_A 94 LRDYQEKALERWLVD-KRGCIVLPTGSGKTHV--------AMAAI----NELS---TPTLIVVPTLALA-----EQWKER 152 (472)
T ss_dssp BCHHHHHHHHHHTTT-TEEEEECCTTSCHHHH--------HHHHH----HHHC---SCEEEEESSHHHH-----HHHHHH
T ss_pred cCHHHHHHHHHHHhc-CCEEEEeCCCCCHHHH--------HHHHH----HHcC---CCEEEEECCHHHH-----HHHHHH
Confidence 468999999999998 7899999999999999 44443 2222 3569999999999 666666
Q ss_pred h-cCCCCcee-EEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh-hCCccEEEEeccccccc
Q psy7952 130 V-TGRSDLYQ-LELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR-YNKLAYIVVDEAHCVSE 206 (444)
Q Consensus 130 l-~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~-~~~~~~iViDE~H~~~~ 206 (444)
+ .++ +. +..++|+.. ...+|+|+||+.+.. .... ..++++||+||+|++.+
T Consensus 153 ~~~~~---~~~v~~~~g~~~---------------~~~~Ivv~T~~~l~~--------~~~~~~~~~~liIvDEaH~~~~ 206 (472)
T 2fwr_A 153 LGIFG---EEYVGEFSGRIK---------------ELKPLTVSTYDSAYV--------NAEKLGNRFMLLIFDEVHHLPA 206 (472)
T ss_dssp GGGGC---GGGEEEBSSSCB---------------CCCSEEEEEHHHHHH--------THHHHTTTCSEEEEETGGGTTS
T ss_pred HHhCC---CcceEEECCCcC---------------CcCCEEEEEcHHHHH--------HHHHhcCCCCEEEEECCcCCCC
Confidence 6 555 77 888888764 356899999988642 1112 24699999999999876
Q ss_pred cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHH--HHHHHhcCCCCeEEEec-----CCCCCCceEEEEEcccc-
Q psy7952 207 WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQ--DIISVLKFNKPYKVFKT-----STFRSNLFYDVIFDDLL- 278 (444)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~--~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~- 278 (444)
.+ +.. + ...++ ..+++++||||.+.... .+...++ +...... ....+...+........
T Consensus 207 ~~--~~~----~---~~~~~-~~~~l~lSATp~~~~~~~~~l~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 273 (472)
T 2fwr_A 207 ES--YVQ----I---AQMSI-APFRLGLTATFEREDGRHEILKEVVG---GKVFELFPDSLAGKHLAKYTIKRIFVPLAE 273 (472)
T ss_dssp TT--THH----H---HHTCC-CSEEEEEESCCCCTTSGGGSHHHHTC---CEEEECCHHHHTSCCCCSEEECCEEECCCH
T ss_pred hH--HHH----H---HHhcC-CCeEEEEecCccCCCCHHHHHHHHhC---CeEeecCHHHHhcCcCCCeEEEEEEcCCCH
Confidence 54 432 2 22333 37899999999742211 1111111 0000000 00000000000000000
Q ss_pred h--------------------------------------------------------hhHHHHHHHHHHHhccCCCCCce
Q psy7952 279 K--------------------------------------------------------DSYAHVKEFIEKCLGKDNKANNC 302 (444)
Q Consensus 279 ~--------------------------------------------------------~~~~~~~~~l~~~l~~~~~~~~~ 302 (444)
. .........+.+++... .+++
T Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~k 351 (472)
T 2fwr_A 274 DERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDK 351 (472)
T ss_dssp HHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT--SSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC--CCCc
Confidence 0 00011223344444442 5789
Q ss_pred EEEEecccchHHHHHHHHHhh-----cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHH
Q psy7952 303 GIIYCRTREHTTDLADALRRK-----VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE 377 (444)
Q Consensus 303 ~iVf~~s~~~~~~l~~~L~~~-----~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr 377 (444)
+||||++++.++.+++.|... ++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+|...|+||
T Consensus 352 ~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~ 431 (472)
T 2fwr_A 352 IIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQR 431 (472)
T ss_dssp BCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHH
T ss_pred EEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHH
Confidence 999999999999999988543 788999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCc-eeEE--EEeccc
Q psy7952 378 SGRAGRDGLQ-SYCR--IYHSEH 397 (444)
Q Consensus 378 ~GR~~R~g~~-g~~~--~~~~~~ 397 (444)
+||+||.|++ +.++ .++..+
T Consensus 432 ~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 432 LGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHHSBCCCTTTCCEEEEEEEECS
T ss_pred HhhccCCCCCCceEEEEEEEeCC
Confidence 9999999865 4443 455543
No 43
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.3e-33 Score=286.48 Aligned_cols=318 Identities=16% Similarity=0.139 Sum_probs=203.5
Q ss_pred HHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhh
Q psy7952 38 AKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSS 117 (444)
Q Consensus 38 ~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L 117 (444)
++-++.+|.. |+++|..++..+++| + +..++||+|||++ |.+|+++. ... .+.++|++||++|
T Consensus 65 ea~~R~lg~~--p~~VQ~~~i~~ll~G-~--Iaem~TGsGKTla--------f~LP~l~~-~l~---g~~vlVltPTreL 127 (853)
T 2fsf_A 65 EASKRVFGMR--HFDVQLLGGMVLNER-C--IAEMRTGEGKTLT--------ATLPAYLN-ALT---GKGVHVVTVNDYL 127 (853)
T ss_dssp HHHHHHHSCC--CCHHHHHHHHHHHSS-E--EEECCTTSCHHHH--------HHHHHHHH-HTT---SSCCEEEESSHHH
T ss_pred HHHHHHcCCC--CChHHHhhcccccCC-e--eeeecCCchHHHH--------HHHHHHHH-HHc---CCcEEEEcCCHHH
Confidence 5556667875 578999999999999 4 8999999999999 77777222 122 2356999999999
Q ss_pred hcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH------Hh
Q psy7952 118 FYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL------VR 189 (444)
Q Consensus 118 ~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~------~~ 189 (444)
+ .|+.+.+..+ ..+ +++..+.|+.+...+...+ +++|+||||+.|. |+++..+. ..
T Consensus 128 A--~Q~~e~~~~l~~~lg---l~v~~i~GG~~~~~r~~~~--------~~dIvvgTpgrl~---fDyLrd~~~~~~~~~~ 191 (853)
T 2fsf_A 128 A--QRDAENNRPLFEFLG---LTVGINLPGMPAPAKREAY--------AADITYGTNNEYG---FDYLRDNMAFSPEERV 191 (853)
T ss_dssp H--HHHHHHHHHHHHHTT---CCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHH---HHHHHHTTCSSGGGCC
T ss_pred H--HHHHHHHHHHHHhcC---CeEEEEeCCCCHHHHHHhc--------CCCEEEECCchhh---HHHHHhhhhccHhHhc
Confidence 9 4556666666 567 9999999998764333222 5899999999974 24444443 33
Q ss_pred hCCccEEEEecccccc-ccCCC----------cHHHHHHHHHHHHhhCC--------------------CCcEE------
Q psy7952 190 YNKLAYIVVDEAHCVS-EWGHD----------FRPTYRRLGELRQFTGN--------------------SIPII------ 232 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~-~~~~~----------~~~~~~~l~~~~~~~~~--------------------~~~~v------ 232 (444)
..++.++|+||+|.++ +.+.. -...+..+..+...++. ..+++
T Consensus 192 ~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~ 271 (853)
T 2fsf_A 192 QRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGL 271 (853)
T ss_dssp CCSCCEEEESCHHHHTTTTTTCEEEEEEC---------------------------------------------------
T ss_pred ccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHH
Confidence 5789999999999987 43210 00111122222222211 12221
Q ss_pred ------------------EEeccCCc---c--------------------------------------------------
Q psy7952 233 ------------------ALTATAEP---S-------------------------------------------------- 241 (444)
Q Consensus 233 ------------------~lSAT~~~---~-------------------------------------------------- 241 (444)
++|||.+. .
T Consensus 272 ~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaiea 351 (853)
T 2fsf_A 272 VLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEA 351 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHh
Confidence 45555321 0
Q ss_pred -------------------------------------hHHHHHHHhcCCCCeEEEecCCCCCCceEEE---EEcccchhh
Q psy7952 242 -------------------------------------VKQDIISVLKFNKPYKVFKTSTFRSNLFYDV---IFDDLLKDS 281 (444)
Q Consensus 242 -------------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 281 (444)
....+.+..++ .+..-+..+|...... ... ....+
T Consensus 352 ke~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l----~vv~IPtn~p~~R~d~~d~v~~-~~~~K 426 (853)
T 2fsf_A 352 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKL----DTVVVPTNRPMIRKDLPDLVYM-TEAEK 426 (853)
T ss_dssp -----CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCC----EEEECCCSSCCCCEECCCEEES-SHHHH
T ss_pred cccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCC----cEEEcCCCCCceeecCCcEEEe-CHHHH
Confidence 01111111111 1112223344333221 222 22344
Q ss_pred HHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccc
Q psy7952 282 YAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFG 351 (444)
Q Consensus 282 ~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 351 (444)
+..+.+.+.... ..+.++||||+|++.++.++..|.+. ....++..+.+.|+.| .|+|||++++
T Consensus 427 ~~al~~~i~~~~----~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 500 (853)
T 2fsf_A 427 IQAIIEDIKERT----AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAG 500 (853)
T ss_dssp HHHHHHHHHHHH----TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCS
T ss_pred HHHHHHHHHHHh----cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEeccccc
Confidence 445555444321 24678999999999999999999987 3445555566667766 7999999999
Q ss_pred cccccCCc-------------------------------------cEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEe
Q psy7952 352 MGIDRQNV-------------------------------------RFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 394 (444)
Q Consensus 352 ~Gidi~~~-------------------------------------~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 394 (444)
||+||+.. .+||+++.|.|.+.|.||+||+||.|.+|.++.|+
T Consensus 501 RGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fl 580 (853)
T 2fsf_A 501 RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYL 580 (853)
T ss_dssp SCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEe
Confidence 99999863 59999999999999999999999999999999999
Q ss_pred cccch
Q psy7952 395 SEHSK 399 (444)
Q Consensus 395 ~~~~~ 399 (444)
+.++.
T Consensus 581 s~eD~ 585 (853)
T 2fsf_A 581 SMEDA 585 (853)
T ss_dssp ETTSG
T ss_pred cccHH
Confidence 87653
No 44
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=8.1e-35 Score=296.20 Aligned_cols=290 Identities=13% Similarity=0.070 Sum_probs=193.3
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhh
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
++|+|+.+++.++.+ +++++.+|||||||++ |++|+ ++.+... ..++||++||++|+ .|+.+.
T Consensus 172 ~lpiq~~~i~~l~~g-~dvlv~a~TGSGKT~~--------~~lpi-l~~l~~~--~~~vLvl~PtreLa-----~Qi~~~ 234 (618)
T 2whx_A 172 GEPDYEVDEDIFRKK-RLTIMDLHPGAGKTKR--------ILPSI-VREALKR--RLRTLILAPTRVVA-----AEMEEA 234 (618)
T ss_dssp CCCCCCCCGGGGSTT-CEEEECCCTTSSTTTT--------HHHHH-HHHHHHT--TCCEEEEESSHHHH-----HHHHHH
T ss_pred CCCccccCHHHHhcC-CeEEEEcCCCCCHHHH--------HHHHH-HHHHHhC--CCeEEEEcChHHHH-----HHHHHH
Confidence 566777778888888 9999999999999999 77777 3333332 24679999999999 566666
Q ss_pred hcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCC
Q psy7952 130 VTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209 (444)
Q Consensus 130 l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~ 209 (444)
+. + ..+. +....... ...++..+.++|.+.+. ..+.....+.++++||+||||++ +.+
T Consensus 235 l~-~---~~v~-~~~~~l~~----------~~tp~~~i~~~t~~~l~-----~~l~~~~~l~~~~~iViDEah~~-~~~- 292 (618)
T 2whx_A 235 LR-G---LPIR-YQTPAVKS----------DHTGREIVDLMCHATFT-----TRLLSSTRVPNYNLIVMDEAHFT-DPC- 292 (618)
T ss_dssp TT-T---SCEE-ECCTTSSC----------CCCSSSCEEEEEHHHHH-----HHHHHCSSCCCCSEEEEESTTCC-SHH-
T ss_pred hc-C---Ccee-Eeccccee----------ccCCCceEEEEChHHHH-----HHHhccccccCCeEEEEECCCCC-Ccc-
Confidence 52 2 2222 22211000 00122334444433321 11122233688999999999997 322
Q ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHH
Q psy7952 210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFI 289 (444)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 289 (444)
+...+..+...+. ..+.|+++||||++..... +.. ..+..+...... + ......+...+
T Consensus 293 -~~~~~~~i~~~l~--~~~~q~il~SAT~~~~~~~----~~~-~~~~~~~v~~~~-~------------~~~~~~ll~~l 351 (618)
T 2whx_A 293 -SVAARGYISTRVE--MGEAAAIFMTATPPGSTDP----FPQ-SNSPIEDIEREI-P------------ERSWNTGFDWI 351 (618)
T ss_dssp -HHHHHHHHHHHHH--HTSCEEEEECSSCTTCCCS----SCC-CSSCEEEEECCC-C------------SSCCSSSCHHH
T ss_pred -HHHHHHHHHHHhc--ccCccEEEEECCCchhhhh----hhc-cCCceeeecccC-C------------HHHHHHHHHHH
Confidence 4444444444332 1348999999999876432 111 112111111100 0 01111122222
Q ss_pred HHHhccCCCCCceEEEEecccchHHHHHHHHHhh------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEE-
Q psy7952 290 EKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFV- 362 (444)
Q Consensus 290 ~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~V- 362 (444)
.+ ..+++||||+++++++.+++.|.+. +...+|..+++.|++|+.+|||||+++++|+|+| +++|
T Consensus 352 ~~-------~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VI 423 (618)
T 2whx_A 352 TD-------YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVI 423 (618)
T ss_dssp HH-------CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEE
T ss_pred Hh-------CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEE
Confidence 22 3678999999999999999999886 5567899999999999999999999999999998 8887
Q ss_pred -------------------EEeCCCCCHHHHHHHhccCCCCCC-ceeEEEEec---ccchhhHHHHHh
Q psy7952 363 -------------------VHWGMPSSIPAYYQESGRAGRDGL-QSYCRIYHS---EHSKKSLEYVIK 407 (444)
Q Consensus 363 -------------------i~~~~p~s~~~~~Qr~GR~~R~g~-~g~~~~~~~---~~~~~~~~~~~~ 407 (444)
|+++.|.|..+|+||+||+||.|. .|.+++++. +++...+..+..
T Consensus 424 d~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~ 491 (618)
T 2whx_A 424 DPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEA 491 (618)
T ss_dssp ECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHH
T ss_pred ECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHh
Confidence 777779999999999999999965 899999997 666666555543
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.7e-34 Score=284.14 Aligned_cols=273 Identities=15% Similarity=0.114 Sum_probs=176.7
Q ss_pred HHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCceeE
Q psy7952 61 ILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQL 139 (444)
Q Consensus 61 ~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~ 139 (444)
+++| +++++++|||||||++ |++|+ +..+...+ .+++|++||++|+ .|+.+.+ ..+ +.
T Consensus 5 l~~g-~~vlv~a~TGSGKT~~--------~l~~~-l~~~~~~~--~~~lil~Ptr~La-----~Q~~~~l~~~~---v~- 63 (440)
T 1yks_A 5 LKKG-MTTVLDFHPGAGKTRR--------FLPQI-LAECARRR--LRTLVLAPTRVVL-----SEMKEAFHGLD---VK- 63 (440)
T ss_dssp TSTT-CEEEECCCTTSSTTTT--------HHHHH-HHHHHHTT--CCEEEEESSHHHH-----HHHHHHTTTSC---EE-
T ss_pred hhCC-CCEEEEcCCCCCHHHH--------HHHHH-HHHHHhcC--CeEEEEcchHHHH-----HHHHHHHhcCC---eE-
Confidence 3456 8999999999999999 65555 33232222 4669999999999 6666666 333 22
Q ss_pred EEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH----HHHhhCCccEEEEeccccccccCCCcHHHH
Q psy7952 140 ELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ----HLVRYNKLAYIVVDEAHCVSEWGHDFRPTY 215 (444)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~----~~~~~~~~~~iViDE~H~~~~~~~~~~~~~ 215 (444)
...+.. -.++||+.+........+. ....+.++++||+||+|++ +.+ +...+
T Consensus 64 -~~~~~~--------------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~--~~~~~ 119 (440)
T 1yks_A 64 -FHTQAF--------------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA--SIAAR 119 (440)
T ss_dssp -EESSCC--------------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH--HHHHH
T ss_pred -Eecccc--------------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Ccc--hHHHH
Confidence 111110 0388998876432222121 1123678999999999997 222 33333
Q ss_pred HHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhcc
Q psy7952 216 RRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGK 295 (444)
Q Consensus 216 ~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (444)
..+..+.. +.+.++++||||+++.... ......+...... .............+.+
T Consensus 120 ~~~~~~~~--~~~~~~l~~SAT~~~~~~~----~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~---- 175 (440)
T 1yks_A 120 GWAAHRAR--ANESATILMTATPPGTSDE----FPHSNGEIEDVQT--------------DIPSEPWNTGHDWILA---- 175 (440)
T ss_dssp HHHHHHHH--TTSCEEEEECSSCTTCCCS----SCCCSSCEEEEEC--------------CCCSSCCSSSCHHHHH----
T ss_pred HHHHHHhc--cCCceEEEEeCCCCchhhh----hhhcCCCeeEeee--------------ccChHHHHHHHHHHHh----
Confidence 33333322 3458999999999876432 1111111111110 0001111111222222
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHhh------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEE-----
Q psy7952 296 DNKANNCGIIYCRTREHTTDLADALRRK------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVH----- 364 (444)
Q Consensus 296 ~~~~~~~~iVf~~s~~~~~~l~~~L~~~------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~----- 364 (444)
.++++||||++++.++.+++.|.+. +...+|..+++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 176 ---~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~ 251 (440)
T 1yks_A 176 ---DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAF 251 (440)
T ss_dssp ---CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEE
T ss_pred ---cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccc
Confidence 3679999999999999999999876 4447889999999999999999999999999999 999986
Q ss_pred --------------eCCCCCHHHHHHHhccCCCC-CCceeEEEEe---cccchhhHHHHH
Q psy7952 365 --------------WGMPSSIPAYYQESGRAGRD-GLQSYCRIYH---SEHSKKSLEYVI 406 (444)
Q Consensus 365 --------------~~~p~s~~~~~Qr~GR~~R~-g~~g~~~~~~---~~~~~~~~~~~~ 406 (444)
++.|.+..+|+||+||+||. |+.|.|++++ ++.+...+..+.
T Consensus 252 ~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~ 311 (440)
T 1yks_A 252 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLE 311 (440)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHH
T ss_pred eeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhh
Confidence 88899999999999999997 6899999996 566666655554
No 46
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.9e-33 Score=285.51 Aligned_cols=323 Identities=17% Similarity=0.170 Sum_probs=219.4
Q ss_pred HHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhh
Q psy7952 37 TAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILS 116 (444)
Q Consensus 37 ~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~ 116 (444)
.++.++.+|+. |+++|..+++.+++| + +..++||+|||++ +.+|+++..+ .+ +.++|++||++
T Consensus 101 rEa~~R~lG~r--P~~VQ~~~ip~Ll~G-~--Iaem~TGeGKTLa--------~~LP~~l~aL-~g---~~v~VvTpTre 163 (922)
T 1nkt_A 101 REAAWRVLDQR--PFDVQVMGAAALHLG-N--VAEMKTGEGKTLT--------CVLPAYLNAL-AG---NGVHIVTVNDY 163 (922)
T ss_dssp HHHHHHHHSCC--CCHHHHHHHHHHHTT-E--EEECCTTSCHHHH--------THHHHHHHHT-TT---SCEEEEESSHH
T ss_pred HHHHHHHcCCC--CCHHHHHHHHhHhcC-C--EEEecCCCccHHH--------HHHHHHHHHH-hC---CCeEEEeCCHH
Confidence 34666778984 688999999999998 4 9999999999999 6677722222 22 35699999999
Q ss_pred hhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH------H
Q psy7952 117 SFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL------V 188 (444)
Q Consensus 117 L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~------~ 188 (444)
|+ .|+.+.+..+ ..+ +++..+.|+.+...+...+ .++|+|+||..|. |+++..+. .
T Consensus 164 LA--~Qdae~m~~l~~~lG---Lsv~~i~gg~~~~~r~~~y--------~~DIvygTpgrlg---fDyLrD~m~~~~~~l 227 (922)
T 1nkt_A 164 LA--KRDSEWMGRVHRFLG---LQVGVILATMTPDERRVAY--------NADITYGTNNEFG---FDYLRDNMAHSLDDL 227 (922)
T ss_dssp HH--HHHHHHHHHHHHHTT---CCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHH---HHHHHHTTCSSGGGC
T ss_pred HH--HHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHHhc--------CCCEEEECchHhh---HHHHHhhhhccHhhh
Confidence 99 4456666666 567 9999999998765443333 5799999999984 35555442 3
Q ss_pred hhCCccEEEEecccccc-ccCC----------CcHHHHHHHHHHHHhhC---------CCCcEE----------------
Q psy7952 189 RYNKLAYIVVDEAHCVS-EWGH----------DFRPTYRRLGELRQFTG---------NSIPII---------------- 232 (444)
Q Consensus 189 ~~~~~~~iViDE~H~~~-~~~~----------~~~~~~~~l~~~~~~~~---------~~~~~v---------------- 232 (444)
....+.++|+||+|.++ +.+. .-...+..+..+...++ +..+++
T Consensus 228 ~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~ 307 (922)
T 1nkt_A 228 VQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGID 307 (922)
T ss_dssp CCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCS
T ss_pred ccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCc
Confidence 35679999999999987 4321 11345566666666665 456676
Q ss_pred -EEeccCCc---chHHHHHH--HhcCCCCeEE-------E----------------------------------------
Q psy7952 233 -ALTATAEP---SVKQDIIS--VLKFNKPYKV-------F---------------------------------------- 259 (444)
Q Consensus 233 -~lSAT~~~---~~~~~~~~--~l~~~~~~~~-------~---------------------------------------- 259 (444)
++|||.+. .+.+.+.. .+.-...+.+ .
T Consensus 308 ~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt 387 (922)
T 1nkt_A 308 NLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATIT 387 (922)
T ss_dssp STTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEC
T ss_pred cccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceee
Confidence 77888654 11111111 1110100000 0
Q ss_pred ----------------------------------ecCCCCCCceEE---EEEcccchhhHHHHHHHHHHHhccCCCCCce
Q psy7952 260 ----------------------------------KTSTFRSNLFYD---VIFDDLLKDSYAHVKEFIEKCLGKDNKANNC 302 (444)
Q Consensus 260 ----------------------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 302 (444)
.-+..+|.+... .... ....++..+.+.+.... ..+.+
T Consensus 388 ~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~-t~~~K~~al~~~i~~~~----~~gqp 462 (922)
T 1nkt_A 388 LQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYK-TEEAKYIAVVDDVAERY----AKGQP 462 (922)
T ss_dssp HHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEES-CHHHHHHHHHHHHHHHH----HTTCC
T ss_pred hHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHH----hcCCc
Confidence 000111111110 1111 12234444444443321 24678
Q ss_pred EEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCc-------------
Q psy7952 303 GIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNV------------- 359 (444)
Q Consensus 303 ~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~------------- 359 (444)
+||||+|++.++.++..|.+. ....++..+.+.|+.| .|+|||++++||+||+..
T Consensus 463 vLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~ 540 (922)
T 1nkt_A 463 VLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRE 540 (922)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhh
Confidence 999999999999999999987 3344444455556655 799999999999999964
Q ss_pred ---------------------------------------cEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccch
Q psy7952 360 ---------------------------------------RFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399 (444)
Q Consensus 360 ---------------------------------------~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 399 (444)
.+||+++.|.|.+.|.||+||+||.|.+|.++.|++.+|.
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 541 RGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999987664
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.9e-34 Score=293.89 Aligned_cols=282 Identities=14% Similarity=0.139 Sum_probs=186.2
Q ss_pred CchHHH-----HHHHHHH------ccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 50 KCELQK-----KAIRHIL------LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 50 ~t~~Q~-----~~~~~~~------~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
||++|+ ++++.++ .+ +++++.+|||+|||++ |++++ +..+... ..+++|++||++|+
T Consensus 216 pt~IQ~~~r~~~aIp~~l~~~~l~~g-~dvlv~apTGSGKTl~--------~ll~i-l~~l~~~--~~~~lilaPTr~La 283 (673)
T 2wv9_A 216 VSAIVQGERVEEPVPEAYNPEMLKKR-QLTVLDLHPGAGKTRR--------ILPQI-IKDAIQK--RLRTAVLAPTRVVA 283 (673)
T ss_dssp EEEEECC-------CCCCCGGGGSTT-CEEEECCCTTTTTTTT--------HHHHH-HHHHHHT--TCCEEEEESSHHHH
T ss_pred cCceeeccccccchHHHhhHHHHhcC-CeEEEEeCCCCCHHHH--------HHHHH-HHHHHhC--CCcEEEEccHHHHH
Confidence 788999 8998887 67 9999999999999999 65555 3222222 24669999999999
Q ss_pred cccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH-HH---HHhhCCc
Q psy7952 119 YLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL-QH---LVRYNKL 193 (444)
Q Consensus 119 ~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~-~~---~~~~~~~ 193 (444)
.|+.+.+ ..+ +. ...+.. -.++||+.+....-...+ .. ...+.++
T Consensus 284 -----~Q~~~~l~~~~---i~--~~~~~l--------------------~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l 333 (673)
T 2wv9_A 284 -----AEMAEALRGLP---VR--YLTPAV--------------------QREHSGNEIVDVMCHATLTHRLMSPLRVPNY 333 (673)
T ss_dssp -----HHHHHHTTTSC---CE--ECCC-----------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCC
T ss_pred -----HHHHHHHhcCC---ee--eecccc--------------------cccCCHHHHHHHHHhhhhHHHHhcccccccc
Confidence 6666666 333 22 111000 016777776432211111 11 1246789
Q ss_pred cEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEE
Q psy7952 194 AYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI 273 (444)
Q Consensus 194 ~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 273 (444)
++||+||+|++.. . +...+..+..... +.+.++++||||+++.... ......++.....
T Consensus 334 ~lvViDEaH~~~~-~--~~~~~~~l~~~~~--~~~~~vl~~SAT~~~~i~~----~~~~~~~i~~v~~------------ 392 (673)
T 2wv9_A 334 NLFVMDEAHFTDP-A--SIAARGYIATRVE--AGEAAAIFMTATPPGTSDP----FPDTNSPVHDVSS------------ 392 (673)
T ss_dssp SEEEEESTTCCCH-H--HHHHHHHHHHHHH--TTSCEEEEECSSCTTCCCS----SCCCSSCEEEEEC------------
T ss_pred eEEEEeCCcccCc-c--HHHHHHHHHHhcc--ccCCcEEEEcCCCChhhhh----hcccCCceEEEee------------
Confidence 9999999999721 1 2222233333221 2458999999999876432 1111111111110
Q ss_pred EcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh------cCHHHHHHHHHHHhcCCccEEEEc
Q psy7952 274 FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------VNKHERSRVQESFMRGEINVITAT 347 (444)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~------~~~~~r~~~~~~f~~g~~~vLvaT 347 (444)
.........+...+.+ .++++||||+++++++.++..|... +...+|..+++.|++|+.+|||||
T Consensus 393 --~~~~~~~~~~l~~l~~-------~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F~~g~~~VLVaT 463 (673)
T 2wv9_A 393 --EIPDRAWSSGFEWITD-------YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITT 463 (673)
T ss_dssp --CCCSSCCSSCCHHHHS-------CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEEC
T ss_pred --ecCHHHHHHHHHHHHh-------CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHHHCCCceEEEEC
Confidence 0000111111122211 4789999999999999999999876 555789999999999999999999
Q ss_pred CccccccccCCccEEEE--------------------eCCCCCHHHHHHHhccCCCC-CCceeEEEEe---cccchhhHH
Q psy7952 348 ISFGMGIDRQNVRFVVH--------------------WGMPSSIPAYYQESGRAGRD-GLQSYCRIYH---SEHSKKSLE 403 (444)
Q Consensus 348 ~~~~~Gidi~~~~~Vi~--------------------~~~p~s~~~~~Qr~GR~~R~-g~~g~~~~~~---~~~~~~~~~ 403 (444)
+++++|+|+| +++||+ ++.|.|..+|+||+||+||. |+.|.+++++ ++.+...+.
T Consensus 464 dv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~ 542 (673)
T 2wv9_A 464 DISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAH 542 (673)
T ss_dssp GGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHH
T ss_pred chhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHH
Confidence 9999999999 999998 56899999999999999999 7899999996 455544333
Q ss_pred H
Q psy7952 404 Y 404 (444)
Q Consensus 404 ~ 404 (444)
.
T Consensus 543 ~ 543 (673)
T 2wv9_A 543 W 543 (673)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.2e-33 Score=279.81 Aligned_cols=272 Identities=14% Similarity=0.118 Sum_probs=173.7
Q ss_pred HHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhhcCCCCcee
Q psy7952 59 RHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQ 138 (444)
Q Consensus 59 ~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~ 138 (444)
+.++.+++++++.+|||+|||.+ |.+|+ +..+... ..++||++||++|+ .|+.+.+. + ..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~--------~~l~i-l~~~~~~--~~~~lvl~Ptr~La-----~Q~~~~l~-g---~~ 74 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRK--------ILPQI-IKDAIQQ--RLRTAVLAPTRVVA-----AEMAEALR-G---LP 74 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTT--------HHHHH-HHHHHHT--TCCEEEEECSHHHH-----HHHHHHTT-T---SC
T ss_pred HHHHhcCCcEEEECCCCCCHHHH--------HHHHH-HHHHHhC--CCcEEEECchHHHH-----HHHHHHhc-C---ce
Confidence 33444438999999999999999 77776 3323322 24569999999999 66666653 2 22
Q ss_pred EEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHH
Q psy7952 139 LELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRL 218 (444)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l 218 (444)
+....+..... ..++..+.++|.+.+. . .+.....+.++++||+||||++... ....+..+
T Consensus 75 v~~~~~~~~~~-----------~t~~~~i~~~~~~~l~----~-~l~~~~~l~~~~~iViDEaH~~~~~---~~~~~~~~ 135 (459)
T 2z83_A 75 VRYQTSAVQRE-----------HQGNEIVDVMCHATLT----H-RLMSPNRVPNYNLFVMDEAHFTDPA---SIAARGYI 135 (459)
T ss_dssp EEECC-------------------CCCSEEEEEHHHHH----H-HHHSCC-CCCCSEEEESSTTCCSHH---HHHHHHHH
T ss_pred EeEEecccccC-----------CCCCcEEEEEchHHHH----H-HhhccccccCCcEEEEECCccCCch---hhHHHHHH
Confidence 22211111100 0123345555644432 1 1222234678999999999985210 11111112
Q ss_pred HHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCC
Q psy7952 219 GELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNK 298 (444)
Q Consensus 219 ~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 298 (444)
.... ...+.++++||||++..... ......++...... ............+.+
T Consensus 136 ~~~~--~~~~~~~il~SAT~~~~~~~----~~~~~~pi~~~~~~--------------~~~~~~~~~~~~l~~------- 188 (459)
T 2z83_A 136 ATKV--ELGEAAAIFMTATPPGTTDP----FPDSNAPIHDLQDE--------------IPDRAWSSGYEWITE------- 188 (459)
T ss_dssp HHHH--HTTSCEEEEECSSCTTCCCS----SCCCSSCEEEEECC--------------CCSSCCSSCCHHHHH-------
T ss_pred HHHh--ccCCccEEEEEcCCCcchhh----hccCCCCeEEeccc--------------CCcchhHHHHHHHHh-------
Confidence 2211 22458999999999875422 11112222221110 001111111222333
Q ss_pred CCceEEEEecccchHHHHHHHHHhh------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEE--------
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVH-------- 364 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~-------- 364 (444)
.++++||||++++.++.+++.|... +..++|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~ 267 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPT 267 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEE
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccc
Confidence 3679999999999999999999876 66678889999999999999999999999999999 99999
Q ss_pred ------------eCCCCCHHHHHHHhccCCCCCC-ceeEEEEeccc
Q psy7952 365 ------------WGMPSSIPAYYQESGRAGRDGL-QSYCRIYHSEH 397 (444)
Q Consensus 365 ------------~~~p~s~~~~~Qr~GR~~R~g~-~g~~~~~~~~~ 397 (444)
++.|.|..+|+||+||+||.|. .|.+++++.+.
T Consensus 268 ~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 268 ILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 6699999999999999999997 89999999865
No 49
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.98 E-value=2.3e-32 Score=284.89 Aligned_cols=317 Identities=14% Similarity=0.096 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCC-ccccccCCccceeEEE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPG-ADFILNGNVRSRNGWI 111 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~-~~~l~~~~~~~~vlil 111 (444)
...+.+.++.. | .+|+..|++++..++.+++++++.+|||+|||.. +|.+ .......+...+++++
T Consensus 80 ~~~~~~~l~~r-~--~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl----------lp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 80 TPKYVDILKIR-R--ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ----------IPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp CHHHHHHHHHH-T--TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH----------HHHHHHHHHCGGGGTCEEEEE
T ss_pred CHHHHHHHHHh-h--cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH----------HHHHHHHhccccCCCceEEec
Confidence 45677778775 5 3578899999998887757899999999999974 2221 0001112223467999
Q ss_pred cchhhhhcccCccchHhhh--cCCCC-ceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHH
Q psy7952 112 SPILSSFYLRFRDDKTSIV--TGRSD-LYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV 188 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l--~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~ 188 (444)
+|+++|+ .++.+.+ ..+.. ...+..-...... .....+|+++||+++. . ......
T Consensus 147 ~P~r~La-----~q~~~~l~~~~~~~v~~~vG~~i~~~~~------------~~~~~~I~v~T~G~l~----r-~l~~~~ 204 (773)
T 2xau_A 147 QPRRVAA-----MSVAQRVAEEMDVKLGEEVGYSIRFENK------------TSNKTILKYMTDGMLL----R-EAMEDH 204 (773)
T ss_dssp ESCHHHH-----HHHHHHHHHHTTCCBTTTEEEEETTEEE------------CCTTCSEEEEEHHHHH----H-HHHHST
T ss_pred CchHHHH-----HHHHHHHHHHhCCchhheecceeccccc------------cCCCCCEEEECHHHHH----H-HHhhCc
Confidence 9999999 5555544 22200 0111111110000 1246789999999974 2 222234
Q ss_pred hhCCccEEEEecccc-ccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCC
Q psy7952 189 RYNKLAYIVVDEAHC-VSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSN 267 (444)
Q Consensus 189 ~~~~~~~iViDE~H~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 267 (444)
.+.++++||+||+|. ..+ ....+..+..+....+ +.++++||||++. +.+..+++ ....+....... +
T Consensus 205 ~l~~~~~lIlDEah~R~ld----~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~---~~l~~~~~--~~~vi~v~gr~~-p 273 (773)
T 2xau_A 205 DLSRYSCIILDEAHERTLA----TDILMGLLKQVVKRRP-DLKIIIMSATLDA---EKFQRYFN--DAPLLAVPGRTY-P 273 (773)
T ss_dssp TCTTEEEEEECSGGGCCHH----HHHHHHHHHHHHHHCT-TCEEEEEESCSCC---HHHHHHTT--SCCEEECCCCCC-C
T ss_pred cccCCCEEEecCccccccc----hHHHHHHHHHHHHhCC-CceEEEEeccccH---HHHHHHhc--CCCcccccCccc-c
Confidence 577899999999996 332 1112233334443333 4899999999964 34555553 222233222211 2
Q ss_pred ceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHh-----------h----------cCH
Q psy7952 268 LFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR-----------K----------VNK 326 (444)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~-----------~----------~~~ 326 (444)
+...+... ............+....... .++++||||+++++++.++..|.+ . +++
T Consensus 274 v~~~~~~~-~~~~~~~~~l~~l~~~~~~~--~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~ 350 (773)
T 2xau_A 274 VELYYTPE-FQRDYLDSAIRTVLQIHATE--EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPP 350 (773)
T ss_dssp EEEECCSS-CCSCHHHHHHHHHHHHHHHS--CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCH
T ss_pred eEEEEecC-CchhHHHHHHHHHHHHHHhc--CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCH
Confidence 22111111 11222233333343333322 478999999999999999999985 1 889
Q ss_pred HHHHHHHHHHh-----cCCccEEEEcCccccccccCCccEEEEeCC------------------CCCHHHHHHHhccCCC
Q psy7952 327 HERSRVQESFM-----RGEINVITATISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGR 383 (444)
Q Consensus 327 ~~r~~~~~~f~-----~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R 383 (444)
++|..+++.|+ +|..+|||||+++++|||+|++++||++|. |.|..+|+||+||+||
T Consensus 351 ~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR 430 (773)
T 2xau_A 351 HQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR 430 (773)
T ss_dssp HHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGS
T ss_pred HHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCC
Confidence 99999999999 999999999999999999999999999888 8899999999999999
Q ss_pred CCCceeEEEEecccch
Q psy7952 384 DGLQSYCRIYHSEHSK 399 (444)
Q Consensus 384 ~g~~g~~~~~~~~~~~ 399 (444)
. .+|.|+.++++.+.
T Consensus 431 ~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 431 T-RPGKCFRLYTEEAF 445 (773)
T ss_dssp S-SSEEEEESSCHHHH
T ss_pred C-CCCEEEEEecHHHh
Confidence 9 88999999987655
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.98 E-value=7e-33 Score=272.09 Aligned_cols=263 Identities=13% Similarity=0.077 Sum_probs=167.4
Q ss_pred CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCC
Q psy7952 66 HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSG 145 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~ 145 (444)
+++++++|||+|||.+ |++++ ++.+...+ .+++|++||++|+ .|..+.+. + +.+....+.
T Consensus 3 ~~~lv~a~TGsGKT~~--------~l~~~-l~~~~~~g--~~~lvl~Pt~~La-----~Q~~~~~~-~---~~v~~~~~~ 62 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRR--------VLPQL-VREAVKKR--LRTVILAPTRVVA-----SEMYEALR-G---EPIRYMTPA 62 (431)
T ss_dssp CEEEEECCTTSCTTTT--------HHHHH-HHHHHHTT--CCEEEEESSHHHH-----HHHHHHTT-T---SCEEEC---
T ss_pred CEEEEEcCCCCCHHHH--------HHHHH-HHHHHhCC--CCEEEECcHHHHH-----HHHHHHhC-C---CeEEEEecC
Confidence 7999999999999999 54555 22222222 3569999999999 55555443 3 444444443
Q ss_pred CChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhh
Q psy7952 146 QTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFT 225 (444)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~ 225 (444)
.... ..++..+.+.|.+.+. +.+.. ...+.++++||+||+|++.. + +......+.... .
T Consensus 63 ~~~~-----------~~~~~~~~~~~~~~l~----~~l~~-~~~~~~l~~vViDEaH~~~~-~--~~~~~~~l~~~~--~ 121 (431)
T 2v6i_A 63 VQSE-----------RTGNEIVDFMCHSTFT----MKLLQ-GVRVPNYNLYIMDEAHFLDP-A--SVAARGYIETRV--S 121 (431)
T ss_dssp -----------------CCCSEEEEEHHHHH----HHHHH-TCCCCCCSEEEEESTTCCSH-H--HHHHHHHHHHHH--H
T ss_pred cccc-----------CCCCceEEEEchHHHH----HHHhc-CccccCCCEEEEeCCccCCc-c--HHHHHHHHHHHh--h
Confidence 2210 0123345555655442 22222 33477899999999999621 1 222233333322 2
Q ss_pred CCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEE
Q psy7952 226 GNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGII 305 (444)
Q Consensus 226 ~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iV 305 (444)
+.++++++||||+++.... +.....+...... .........+.+.+.+ .++++||
T Consensus 122 ~~~~~~l~~SAT~~~~~~~----~~~~~~~i~~~~~--------------~~~~~~~~~~~~~l~~-------~~~~~lV 176 (431)
T 2v6i_A 122 MGDAGAIFMTATPPGTTEA----FPPSNSPIIDEET--------------RIPDKAWNSGYEWITE-------FDGRTVW 176 (431)
T ss_dssp TTSCEEEEEESSCTTCCCS----SCCCSSCCEEEEC--------------CCCSSCCSSCCHHHHS-------CSSCEEE
T ss_pred CCCCcEEEEeCCCCcchhh----hcCCCCceeeccc--------------cCCHHHHHHHHHHHHc-------CCCCEEE
Confidence 3458999999999875321 1100111111100 0001111112222222 3668999
Q ss_pred EecccchHHHHHHHHHhh------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccE-----------------E
Q psy7952 306 YCRTREHTTDLADALRRK------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRF-----------------V 362 (444)
Q Consensus 306 f~~s~~~~~~l~~~L~~~------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~-----------------V 362 (444)
||+++++++.+++.|.+. +...+|..+++.|++|+.+|||||+++++|+|+| +.+ |
T Consensus 177 F~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~v 255 (431)
T 2v6i_A 177 FVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVS 255 (431)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEE
T ss_pred EeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceeccccee
Confidence 999999999999999876 5556889999999999999999999999999999 544 6
Q ss_pred EEeCCCCCHHHHHHHhccCCCCCCceeEEEEec
Q psy7952 363 VHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHS 395 (444)
Q Consensus 363 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 395 (444)
|+++.|.+..+|+||+||+||.|..+.+++++.
T Consensus 256 i~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 256 MQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 788899999999999999999986544444443
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.97 E-value=5.8e-33 Score=280.11 Aligned_cols=263 Identities=14% Similarity=0.104 Sum_probs=177.6
Q ss_pred HHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh--
Q psy7952 53 LQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-- 130 (444)
Q Consensus 53 ~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-- 130 (444)
+|.+++..+..+ +++++.||||+|||.+ +.+++ +..+. +++|++||++|+ .+..+.+
T Consensus 221 ~q~~i~~~L~~~-~~vlv~ApTGSGKT~a--------~~l~l----l~~g~---~vLVl~PTReLA-----~Qia~~l~~ 279 (666)
T 3o8b_A 221 DNSSPPAVPQSF-QVAHLHAPTGSGKSTK--------VPAAY----AAQGY---KVLVLNPSVAAT-----LGFGAYMSK 279 (666)
T ss_dssp CCCSCCCCCSSC-EEEEEECCTTSCTTTH--------HHHHH----HHTTC---CEEEEESCHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHcC-CeEEEEeCCchhHHHH--------HHHHH----HHCCC---eEEEEcchHHHH-----HHHHHHHHH
Confidence 555555555555 8999999999999988 55555 33322 569999999999 4444454
Q ss_pred cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCC
Q psy7952 131 TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHD 210 (444)
Q Consensus 131 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~ 210 (444)
..+ ..+....|+... ..+.+|+|+||++|. ......+.++++||+||+|++.. +
T Consensus 280 ~~g---~~vg~~vG~~~~-------------~~~~~IlV~TPGrLl-------~~~~l~l~~l~~lVlDEAH~l~~-~-- 333 (666)
T 3o8b_A 280 AHG---IDPNIRTGVRTI-------------TTGAPVTYSTYGKFL-------ADGGCSGGAYDIIICDECHSTDS-T-- 333 (666)
T ss_dssp HHS---CCCEEECSSCEE-------------CCCCSEEEEEHHHHH-------HTTSCCTTSCSEEEETTTTCCSH-H--
T ss_pred HhC---CCeeEEECcEec-------------cCCCCEEEECcHHHH-------hCCCcccCcccEEEEccchhcCc-c--
Confidence 334 445556665432 467899999999962 23334566799999999987532 2
Q ss_pred cHHHHHHHHHHHHhhCCCCc--EEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHH
Q psy7952 211 FRPTYRRLGELRQFTGNSIP--IIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEF 288 (444)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~--~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (444)
+...+..+ ++..+...+ ++++|||+++... ...+............+. .... ...
T Consensus 334 ~~~~l~~I---l~~l~~~~~~llil~SAT~~~~i~--------~~~p~i~~v~~~~~~~i~----~~~~-~~~------- 390 (666)
T 3o8b_A 334 TILGIGTV---LDQAETAGARLVVLATATPPGSVT--------VPHPNIEEVALSNTGEIP----FYGK-AIP------- 390 (666)
T ss_dssp HHHHHHHH---HHHTTTTTCSEEEEEESSCTTCCC--------CCCTTEEEEECBSCSSEE----ETTE-EEC-------
T ss_pred HHHHHHHH---HHhhhhcCCceEEEECCCCCcccc--------cCCcceEEEeecccchhH----HHHh-hhh-------
Confidence 44444444 444444344 7888999987421 112111111111111110 0000 000
Q ss_pred HHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCC
Q psy7952 289 IEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQN 358 (444)
Q Consensus 289 l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 358 (444)
+. ...++++||||++++.++.+++.|.+. +++++ |+++..+|||||+++++|||+|
T Consensus 391 ----l~--~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId- 456 (666)
T 3o8b_A 391 ----IE--AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD- 456 (666)
T ss_dssp ----GG--GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-
T ss_pred ----hh--hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-
Confidence 01 115789999999999999999999876 44432 5566779999999999999997
Q ss_pred ccEEE----------EeC-----------CCCCHHHHHHHhccCCCCCCceeEEEEecccchhh
Q psy7952 359 VRFVV----------HWG-----------MPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 401 (444)
Q Consensus 359 ~~~Vi----------~~~-----------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 401 (444)
+++|| +|| .|.|..+|+||+||+|| |+.|. +.|+.+.+...
T Consensus 457 V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 457 FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 99988 566 89999999999999999 89999 88888776544
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=4.7e-32 Score=289.91 Aligned_cols=314 Identities=15% Similarity=0.096 Sum_probs=201.5
Q ss_pred CchHHHHHHHHHHcc-CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHh
Q psy7952 50 KCELQKKAIRHILLR-THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTS 128 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~-~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~ 128 (444)
+++||.+++..++.. ..++++.++||+|||++|+.++ ..+...+...++||+||+ +|+ .++..
T Consensus 154 LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i----------~~l~~~g~~~rvLIVvP~-sLl-----~Qw~~ 217 (968)
T 3dmq_A 154 LIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMIL----------HQQLLSGAAERVLIIVPE-TLQ-----HQWLV 217 (968)
T ss_dssp CCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHH----------HHHHHTSSCCCEEEECCT-TTH-----HHHHH
T ss_pred CcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHH----------HHHHHhCCCCeEEEEeCH-HHH-----HHHHH
Confidence 358999999998874 2578999999999999854322 123344555578999999 888 56666
Q ss_pred hh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccc
Q psy7952 129 IV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSE 206 (444)
Q Consensus 129 ~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~ 206 (444)
.+ .++ +++..++++.... ...........++|+|+|++.+.... .........++++||+||+|++..
T Consensus 218 E~~~~f~---l~v~v~~~~~~~~----~~~~~~~~~~~~dIvI~T~~~L~~~~---~~~~~l~~~~~dlVIvDEAH~~kn 287 (968)
T 3dmq_A 218 EMLRRFN---LRFALFDDERYAE----AQHDAYNPFDTEQLVICSLDFARRSK---QRLEHLCEAEWDLLVVDEAHHLVW 287 (968)
T ss_dssp HHHHHSC---CCCEECCHHHHHH----HHHTTCSSSTTCSEEEECHHHHHTST---TTTHHHHTSCCCEEEECCSSCCCC
T ss_pred HHHHHhC---CCEEEEccchhhh----hhhhcccccccCCEEEEcHHHHhhCH---HHHHHhhhcCCCEEEehhhHhhcC
Confidence 66 445 6666665432211 11111122346799999988874311 001223356899999999999965
Q ss_pred cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCC-------------------------------
Q psy7952 207 WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKP------------------------------- 255 (444)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~------------------------------- 255 (444)
.+......+..+..+.. +..++++|||||.++...++...+.+-.+
T Consensus 288 ~~~~~s~~~~~l~~L~~---~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~ 364 (968)
T 3dmq_A 288 SEDAPSREYQAIEQLAE---HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNK 364 (968)
T ss_dssp BTTBCCHHHHHHHHHHT---TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred CCCcchHHHHHHHHHhh---cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCC
Confidence 54333333444544322 33669999999964222111111000000
Q ss_pred --------------------------------------------------eEEEecCC----CCCC-ceEEEEEccc---
Q psy7952 256 --------------------------------------------------YKVFKTST----FRSN-LFYDVIFDDL--- 277 (444)
Q Consensus 256 --------------------------------------------------~~~~~~~~----~~~~-~~~~~~~~~~--- 277 (444)
-....... ..+. ..........
T Consensus 365 ~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~ 444 (968)
T 3dmq_A 365 LSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQY 444 (968)
T ss_dssp CCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHH
T ss_pred CCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHH
Confidence 00000000 0000 0000000000
Q ss_pred --------------------------------------chhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHH
Q psy7952 278 --------------------------------------LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADA 319 (444)
Q Consensus 278 --------------------------------------~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~ 319 (444)
...........+.+++... .+.++||||+++.+++.++..
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~ 522 (968)
T 3dmq_A 445 QTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSH--RSQKVLVICAKAATALQLEQV 522 (968)
T ss_dssp HHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHT--SSSCCCEECSSTHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhC--CCCCEEEEeCcHHHHHHHHHH
Confidence 0000112233344444332 688999999999999999999
Q ss_pred HHhh-----------cCHHHHHHHHHHHhcCC--ccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCC
Q psy7952 320 LRRK-----------VNKHERSRVQESFMRGE--INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL 386 (444)
Q Consensus 320 L~~~-----------~~~~~r~~~~~~f~~g~--~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 386 (444)
|... ++..+|..+++.|++|+ .+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+
T Consensus 523 L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq 602 (968)
T 3dmq_A 523 LREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQ 602 (968)
T ss_dssp HHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSS
T ss_pred HHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCC
Confidence 9953 88899999999999998 9999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEe
Q psy7952 387 QSYCRIYH 394 (444)
Q Consensus 387 ~g~~~~~~ 394 (444)
.+.++++.
T Consensus 603 ~~~v~v~~ 610 (968)
T 3dmq_A 603 AHDIQIHV 610 (968)
T ss_dssp CSCCEEEE
T ss_pred CceEEEEE
Confidence 88765554
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=2.2e-30 Score=260.42 Aligned_cols=305 Identities=15% Similarity=0.159 Sum_probs=194.1
Q ss_pred CchHHHHHHHHHH----ccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccc
Q psy7952 50 KCELQKKAIRHIL----LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDD 125 (444)
Q Consensus 50 ~t~~Q~~~~~~~~----~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~ 125 (444)
+.+||.+++..+. .+ +++++..+||+|||++|+.++ ..+...+...++||+|| .+|+ .||.+
T Consensus 38 L~~~Q~~~v~~l~~~~~~~-~~~ilad~~GlGKT~~ai~~i----------~~~~~~~~~~~~LIv~P-~~l~--~qw~~ 103 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLG-FGICLADDMGLGKTLQTIAVF----------SDAKKENELTPSLVICP-LSVL--KNWEE 103 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTT-CCEEECCCTTSCHHHHHHHHH----------HHHHHTTCCSSEEEEEC-STTH--HHHHH
T ss_pred chHHHHHHHHHHHHHhhCC-CCEEEEeCCCCcHHHHHHHHH----------HHHHhcCCCCCEEEEcc-HHHH--HHHHH
Confidence 4589999998774 34 789999999999998843221 11333344456799999 5577 33444
Q ss_pred hHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccc
Q psy7952 126 KTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVS 205 (444)
Q Consensus 126 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~ 205 (444)
.++.+... .++..++++.... ....++|+|+||+.+.... ......+++||+||||++.
T Consensus 104 e~~~~~~~---~~v~~~~g~~~~~-----------~~~~~~ivi~t~~~l~~~~-------~l~~~~~~~vIvDEaH~~k 162 (500)
T 1z63_A 104 ELSKFAPH---LRFAVFHEDRSKI-----------KLEDYDIILTTYAVLLRDT-------RLKEVEWKYIVIDEAQNIK 162 (500)
T ss_dssp HHHHHCTT---SCEEECSSSTTSC-----------CGGGSSEEEEEHHHHTTCH-------HHHTCCEEEEEEETGGGGS
T ss_pred HHHHHCCC---ceEEEEecCchhc-----------cccCCcEEEeeHHHHhccc-------hhcCCCcCEEEEeCccccC
Confidence 44444333 6677777665321 1246799999999986432 1334578999999999986
Q ss_pred ccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCC--------------------------------
Q psy7952 206 EWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFN-------------------------------- 253 (444)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~-------------------------------- 253 (444)
+.+. ..+..+ ..++. .+.+++||||..+...++...+.+-
T Consensus 163 n~~~---~~~~~l----~~l~~-~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~ 234 (500)
T 1z63_A 163 NPQT---KIFKAV----KELKS-KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKA 234 (500)
T ss_dssp CTTS---HHHHHH----HTSCE-EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHH
T ss_pred CHhH---HHHHHH----Hhhcc-CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHH
Confidence 5432 112222 22333 6789999999776544443322110
Q ss_pred --CCeEEEecC------CCCCCceEEEEEcccchhh---HH---------------------------------------
Q psy7952 254 --KPYKVFKTS------TFRSNLFYDVIFDDLLKDS---YA--------------------------------------- 283 (444)
Q Consensus 254 --~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~--------------------------------------- 283 (444)
.++.+.+.. ...|............... +.
T Consensus 235 ~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~ 314 (500)
T 1z63_A 235 IISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALL 314 (500)
T ss_dssp HHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHH
T ss_pred HHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHh
Confidence 122222111 1122222222221111100 00
Q ss_pred ----------HHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----------cCHHHHHHHHHHHhcC-Cc
Q psy7952 284 ----------HVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-----------VNKHERSRVQESFMRG-EI 341 (444)
Q Consensus 284 ----------~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-----------~~~~~r~~~~~~f~~g-~~ 341 (444)
.....+.+.+......+.++||||++...++.++..|... ++..+|..+++.|++| ..
T Consensus 315 ~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~ 394 (500)
T 1z63_A 315 KGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSV 394 (500)
T ss_dssp HCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTC
T ss_pred cCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 0111112222222235789999999999999999999763 7889999999999988 55
Q ss_pred c-EEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEE--EEeccc
Q psy7952 342 N-VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCR--IYHSEH 397 (444)
Q Consensus 342 ~-vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~ 397 (444)
+ +|++|+++++|+|+|.+++||++|+|+|+..|.|++||++|.|+.+.+. .++..+
T Consensus 395 ~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 395 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 5 7999999999999999999999999999999999999999999876653 344444
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=8.1e-30 Score=260.25 Aligned_cols=282 Identities=14% Similarity=0.136 Sum_probs=190.7
Q ss_pred HHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-c
Q psy7952 53 LQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-T 131 (444)
Q Consensus 53 ~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~ 131 (444)
.|.......+++ ++++++||||+|||..| +..+...+.. +|++|+++|+ .|..+.+ .
T Consensus 144 ~~~~p~ar~l~r-k~vlv~apTGSGKT~~a-------------l~~l~~~~~g---l~l~PtR~LA-----~Qi~~~l~~ 201 (677)
T 3rc3_A 144 PNWYPDARAMQR-KIIFHSGPTNSGKTYHA-------------IQKYFSAKSG---VYCGPLKLLA-----HEIFEKSNA 201 (677)
T ss_dssp GGGCHHHHTSCC-EEEEEECCTTSSHHHHH-------------HHHHHHSSSE---EEEESSHHHH-----HHHHHHHHH
T ss_pred hhhCHHHHhcCC-CEEEEEcCCCCCHHHHH-------------HHHHHhcCCe---EEEeCHHHHH-----HHHHHHHHh
Confidence 333333455566 89999999999999752 2224444444 9999999999 6777777 6
Q ss_pred CCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccccCCCc
Q psy7952 132 GRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDF 211 (444)
Q Consensus 132 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~~~~~ 211 (444)
.+ +.+..++|+....... .....+++++|++.+. ....++++|+||+|++.+.+ +
T Consensus 202 ~g---~~v~lltG~~~~iv~T--------pGr~~~il~~T~e~~~------------l~~~v~lvVIDEaH~l~d~~--~ 256 (677)
T 3rc3_A 202 AG---VPCDLVTGEERVTVQP--------NGKQASHVSCTVEMCS------------VTTPYEVAVIDEIQMIRDPA--R 256 (677)
T ss_dssp TT---CCEEEECSSCEECCST--------TCCCCSEEEEEGGGCC------------SSSCEEEEEECSGGGGGCTT--T
T ss_pred cC---CcEEEEECCeeEEecC--------CCcccceeEecHhHhh------------hcccCCEEEEecceecCCcc--c
Confidence 67 8888888876541000 0013678888887753 13567999999999997655 4
Q ss_pred HHHHHHHHHHHHhhC-CCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCCCCCceEEEEEcccchhhHHHHHHHHH
Q psy7952 212 RPTYRRLGELRQFTG-NSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIE 290 (444)
Q Consensus 212 ~~~~~~l~~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 290 (444)
...+..+ +...+ ...+++++|||.+ ....+....+ ....+... .+... ... ......
T Consensus 257 g~~~~~~---l~~l~~~~i~il~~SAT~~--~i~~l~~~~~--~~~~v~~~--~r~~~-l~~--~~~~l~---------- 314 (677)
T 3rc3_A 257 GWAWTRA---LLGLCAEEVHLCGEPAAID--LVMELMYTTG--EEVEVRDY--KRLTP-ISV--LDHALE---------- 314 (677)
T ss_dssp HHHHHHH---HHHCCEEEEEEEECGGGHH--HHHHHHHHHT--CCEEEEEC--CCSSC-EEE--CSSCCC----------
T ss_pred hHHHHHH---HHccCccceEEEeccchHH--HHHHHHHhcC--CceEEEEe--eecch-HHH--HHHHHH----------
Confidence 4433332 22333 4578999999942 2333333322 23222211 11110 000 000000
Q ss_pred HHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhc--CCccEEEEcCccccccccCC
Q psy7952 291 KCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMR--GEINVITATISFGMGIDRQN 358 (444)
Q Consensus 291 ~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gidi~~ 358 (444)
.+.. .....+|||+++++++.++..|.+. +++++|..+++.|++ |..+|||||+++++|+|+ +
T Consensus 315 -~l~~---~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~ 389 (677)
T 3rc3_A 315 -SLDN---LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-S 389 (677)
T ss_dssp -SGGG---CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-C
T ss_pred -HHHh---cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-C
Confidence 0001 1334589999999999999999876 899999999999998 889999999999999999 8
Q ss_pred ccEEEEeCC--------------CCCHHHHHHHhccCCCCCCc---eeEEEEecccchhhHHHHHhhc
Q psy7952 359 VRFVVHWGM--------------PSSIPAYYQESGRAGRDGLQ---SYCRIYHSEHSKKSLEYVIKTD 409 (444)
Q Consensus 359 ~~~Vi~~~~--------------p~s~~~~~Qr~GR~~R~g~~---g~~~~~~~~~~~~~~~~~~~~~ 409 (444)
+++||++|. |.|..+|+||+||+||.|.. |.|+.+. +++...+..+....
T Consensus 390 v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~-~~d~~~~~~~~~~~ 456 (677)
T 3rc3_A 390 IRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN-HEDLSLLKEILKRP 456 (677)
T ss_dssp BSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS-TTHHHHHHHHHHSC
T ss_pred ccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe-cchHHHHHHHHhcC
Confidence 999999998 77999999999999999864 6655544 44555666666544
No 55
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=1.9e-27 Score=252.53 Aligned_cols=323 Identities=13% Similarity=0.074 Sum_probs=194.6
Q ss_pred CCHHHHHHHHHHHhCC-----cccCchHHHHHHHHHHcc-------------CCcEEEEccCCCcccccccccccceEEe
Q psy7952 31 VSEQELTAKLKALFGF-----DSFKCELQKKAIRHILLR-------------THDIFVSMPTGAVSLVGSVVSARSRVRI 92 (444)
Q Consensus 31 ~~~~~~~~~l~~~~g~-----~~~~t~~Q~~~~~~~~~~-------------~~~~ii~apTGsGKT~~a~~~~~~~~~~ 92 (444)
+....+.+.+....-+ ...|+++|.+|++.++.. .++.+++++||||||+++ +
T Consensus 248 ~~~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~---------~ 318 (1038)
T 2w00_A 248 FQKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS---------F 318 (1038)
T ss_dssp TSHHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH---------H
T ss_pred hchHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH---------H
Confidence 3455666666553211 112568999999998761 267999999999999993 2
Q ss_pred CCCccccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEEC
Q psy7952 93 PPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVT 171 (444)
Q Consensus 93 ~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 171 (444)
++ +..+...+...++||++|+++|+ .|..+.+ .+... .+.+..+..... ..+. ..+.+|+|+|
T Consensus 319 ~l-~~ll~~~~~~~rvLvlvpr~eL~-----~Q~~~~f~~f~~~-----~v~~~~s~~~l~---~~L~--~~~~~IiVtT 382 (1038)
T 2w00_A 319 KA-ARLATELDFIDKVFFVVDRKDLD-----YQTMKEYQRFSPD-----SVNGSENTAGLK---RNLD--KDDNKIIVTT 382 (1038)
T ss_dssp HH-HHHHTTCTTCCEEEEEECGGGCC-----HHHHHHHHTTSTT-----CSSSSCCCHHHH---HHHH--CSSCCEEEEE
T ss_pred HH-HHHHHhcCCCceEEEEeCcHHHH-----HHHHHHHHHhccc-----ccccccCHHHHH---HHhc--CCCCCEEEEE
Confidence 22 22232223335889999999999 4444444 33211 112222222222 2221 3578999999
Q ss_pred CCccccccHHHHHHH---HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchH----H
Q psy7952 172 PERAVTESFHYLLQH---LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVK----Q 244 (444)
Q Consensus 172 pe~l~~~~~~~~~~~---~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~----~ 244 (444)
|++|.. .... ...+....+||+||||++.. ...+ ..+...+++ .++++|||||..... .
T Consensus 383 iqkl~~-----~l~~~~~~~~~~~~~lvIiDEAHrs~~-----~~~~---~~I~~~~p~-a~~lgfTATP~~~~~~~~~~ 448 (1038)
T 2w00_A 383 IQKLNN-----LMKAESDLPVYNQQVVFIFDECHRSQF-----GEAQ---KNLKKKFKR-YYQFGFTGTPIFPENALGSE 448 (1038)
T ss_dssp HHHHHH-----HHHHCCCCGGGGSCEEEEEESCCTTHH-----HHHH---HHHHHHCSS-EEEEEEESSCCCSTTCTTSC
T ss_pred HHHHHH-----HHhcccchhccccccEEEEEccchhcc-----hHHH---HHHHHhCCc-ccEEEEeCCccccccchhhh
Confidence 999742 2221 12345778999999999642 1222 234455665 789999999986431 1
Q ss_pred HHHHHhcCCCCeEEEec-----CCCCCCceEEEEE--cc----------------------cchhhHHHHHHHHHHHh-c
Q psy7952 245 DIISVLKFNKPYKVFKT-----STFRSNLFYDVIF--DD----------------------LLKDSYAHVKEFIEKCL-G 294 (444)
Q Consensus 245 ~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~--~~----------------------~~~~~~~~~~~~l~~~l-~ 294 (444)
.....++ .++....- .....++.+.+.. .. ........+...+.... .
T Consensus 449 ~t~~~FG--~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~ 526 (1038)
T 2w00_A 449 TTASVFG--RELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQ 526 (1038)
T ss_dssp CHHHHHC--SEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--CeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 2233333 11111100 0000111110100 00 00111122222222221 1
Q ss_pred cC-----CCCCceEEEEecccchHHHHHHHHHhh-------------------cC------------------------H
Q psy7952 295 KD-----NKANNCGIIYCRTREHTTDLADALRRK-------------------VN------------------------K 326 (444)
Q Consensus 295 ~~-----~~~~~~~iVf~~s~~~~~~l~~~L~~~-------------------~~------------------------~ 326 (444)
.. ...+.++||||+|+.+|..+++.|.+. ++ +
T Consensus 527 ~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~ 606 (1038)
T 2w00_A 527 KTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDS 606 (1038)
T ss_dssp HTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCH
T ss_pred hhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccch
Confidence 11 013468999999999999999888542 11 1
Q ss_pred -----------------------------HHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHH
Q psy7952 327 -----------------------------HERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE 377 (444)
Q Consensus 327 -----------------------------~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr 377 (444)
..|..++++|++|++++||+|+++.+|+|+|.+ .++.+|.|.+...|+|+
T Consensus 607 ~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQa 685 (1038)
T 2w00_A 607 SAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQA 685 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeeh
Confidence 137788999999999999999999999999999 66778999999999999
Q ss_pred hccCCCCCCc----eeEEEEec
Q psy7952 378 SGRAGRDGLQ----SYCRIYHS 395 (444)
Q Consensus 378 ~GR~~R~g~~----g~~~~~~~ 395 (444)
+||++|.+.+ |.++.|..
T Consensus 686 IGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 686 FSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHTTCCCCCTTCCSEEEEESSC
T ss_pred hhccCcCCCCCCCcEEEEEccc
Confidence 9999998653 66665554
No 56
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.7e-28 Score=256.14 Aligned_cols=316 Identities=16% Similarity=0.120 Sum_probs=199.6
Q ss_pred hHHHHHHHHHH----ccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchH
Q psy7952 52 ELQKKAIRHIL----LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKT 127 (444)
Q Consensus 52 ~~Q~~~~~~~~----~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~ 127 (444)
+||.+++..+. .+ +++++..+||+|||+.++.++. ..+...+...++||||| .+|+ .|+.+.+
T Consensus 239 ~yQ~egv~~l~~~~~~~-~~~ILademGlGKT~~ai~~i~---------~l~~~~~~~~~~LIV~P-~sll--~qW~~E~ 305 (800)
T 3mwy_W 239 DFQLTGINWMAFLWSKG-DNGILADEMGLGKTVQTVAFIS---------WLIFARRQNGPHIIVVP-LSTM--PAWLDTF 305 (800)
T ss_dssp THHHHHHHHHHHHHTTT-CCEEECCCTTSSTTHHHHHHHH---------HHHHHHSCCSCEEEECC-TTTH--HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcC-CCEEEEeCCCcchHHHHHHHHH---------HHHHhcCCCCCEEEEEC-chHH--HHHHHHH
Confidence 79999998776 45 8899999999999988433211 11112222334599999 5566 2334444
Q ss_pred hhhcCCCCceeEEEEeCCCChhhHHHHHHHH------HhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecc
Q psy7952 128 SIVTGRSDLYQLELIVSGQTKTENKAILEEL------RLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEA 201 (444)
Q Consensus 128 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~ 201 (444)
..+... +++..++|+............. ......++|+|+|++.+... ........+++||+|||
T Consensus 306 ~~~~p~---~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~------~~~l~~~~w~~vIvDEa 376 (800)
T 3mwy_W 306 EKWAPD---LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD------RAELGSIKWQFMAVDEA 376 (800)
T ss_dssp HHHSTT---CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT------HHHHHTSEEEEEEETTG
T ss_pred HHHCCC---ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh------HHHHhcCCcceeehhhh
Confidence 444434 7788888776543322211100 01235688999999997521 12223346899999999
Q ss_pred ccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCC----------------------------
Q psy7952 202 HCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFN---------------------------- 253 (444)
Q Consensus 202 H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~---------------------------- 253 (444)
|++-.... ..+..+ ..+.. ...+++||||..+....+...+.+-
T Consensus 377 H~lkn~~s---~~~~~l----~~l~~-~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~ 448 (800)
T 3mwy_W 377 HRLKNAES---SLYESL----NSFKV-ANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLH 448 (800)
T ss_dssp GGGCCSSS---HHHHHH----TTSEE-EEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHH
T ss_pred hhhcCchh---HHHHHH----HHhhh-ccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHH
Confidence 99855332 112222 22322 5678999999765555444433321
Q ss_pred ---CCeEEEecCC----CCCCceEEEEEcccchhh---------------------------------------------
Q psy7952 254 ---KPYKVFKTST----FRSNLFYDVIFDDLLKDS--------------------------------------------- 281 (444)
Q Consensus 254 ---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------------------------------------------- 281 (444)
.++.+.+... ..|...............
T Consensus 449 ~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~ 528 (800)
T 3mwy_W 449 RRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDN 528 (800)
T ss_dssp HTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSS
T ss_pred HHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcc
Confidence 1112211110 011111111111110000
Q ss_pred -------------------------HHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCH
Q psy7952 282 -------------------------YAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNK 326 (444)
Q Consensus 282 -------------------------~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~ 326 (444)
.......+.+++......++++||||.....+..+.+.|... ++.
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~ 608 (800)
T 3mwy_W 529 AEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPS 608 (800)
T ss_dssp HHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCH
T ss_pred hHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCH
Confidence 001122333344433446789999999999999999999866 889
Q ss_pred HHHHHHHHHHhcCCc---cEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEE--EEeccc
Q psy7952 327 HERSRVQESFMRGEI---NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCR--IYHSEH 397 (444)
Q Consensus 327 ~~r~~~~~~f~~g~~---~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~ 397 (444)
.+|..+++.|+++.. .+|++|.++++|+|++.+++||++|+|+|+..+.|++||+.|.|+...+. .++..+
T Consensus 609 ~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 609 AQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp HHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred HHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 999999999998654 48999999999999999999999999999999999999999999875554 345544
No 57
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.95 E-value=1.2e-26 Score=230.96 Aligned_cols=320 Identities=19% Similarity=0.141 Sum_probs=210.5
Q ss_pred HHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhh
Q psy7952 37 TAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILS 116 (444)
Q Consensus 37 ~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~ 116 (444)
.++-++.+|..+ .+.|.-..-.+.+| + +..+.||.|||++ +.+|+.+..+. +. .|.|++|+..
T Consensus 65 REAa~R~lg~r~--~dvQligg~~L~~G-~--iaEM~TGEGKTLv--------a~lp~~lnAL~-G~---~vhVvT~ndy 127 (822)
T 3jux_A 65 REAARRTLGMRP--FDVQVMGGIALHEG-K--VAEMKTGEGKTLA--------ATMPIYLNALI-GK---GVHLVTVNDY 127 (822)
T ss_dssp HHHHHHHTSCCC--CHHHHHHHHHHHTT-C--EEECCTTSCHHHH--------THHHHHHHHTT-SS---CEEEEESSHH
T ss_pred HHHHHHHhCCCC--cHHHHHHHHHHhCC-C--hhhccCCCCccHH--------HHHHHHHHHhc-CC---ceEEEeccHH
Confidence 356677778886 35898888888887 3 8999999999999 55555223232 33 3489999999
Q ss_pred hhcccCccchHhhh--cCCCCceeEEEEeC--------------------------------------------------
Q psy7952 117 SFYLRFRDDKTSIV--TGRSDLYQLELIVS-------------------------------------------------- 144 (444)
Q Consensus 117 L~~~~q~~~~~~~l--~~~~~~i~~~~~~~-------------------------------------------------- 144 (444)
||. |-.+.+..+ .+| +.+..+.+
T Consensus 128 LA~--rdae~m~~l~~~Lg---lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 202 (822)
T 3jux_A 128 LAR--RDALWMGPVYLFLG---LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQV 202 (822)
T ss_dssp HHH--HHHHHHHHHHHHTT---CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCE
T ss_pred HHH--hHHHHHHHHHHHhC---CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccc
Confidence 992 113344444 667 88888887
Q ss_pred CCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh------hCCccEEEEecccccc-ccC---------
Q psy7952 145 GQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR------YNKLAYIVVDEAHCVS-EWG--------- 208 (444)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~------~~~~~~iViDE~H~~~-~~~--------- 208 (444)
+.+..++...+ .+||+++|..-+. |+++..++.. ...+.+.||||+|.++ +..
T Consensus 203 ~~~~~err~aY--------~~DItYgTn~Efg---FDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~ 271 (822)
T 3jux_A 203 ELKEITRKEAY--------LCDVTYGTNNEFG---FDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGP 271 (822)
T ss_dssp ECCBCCHHHHH--------HSSEEEEEHHHHH---HHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECC
T ss_pred cCCHHHHHHHh--------cCCCEEccCcchh---hHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCC
Confidence 23334444444 4799999977765 5666655422 2468999999999762 211
Q ss_pred ---------------------CCc---------------------------------HHHHHHHHHHHH-----------
Q psy7952 209 ---------------------HDF---------------------------------RPTYRRLGELRQ----------- 223 (444)
Q Consensus 209 ---------------------~~~---------------------------------~~~~~~l~~~~~----------- 223 (444)
.+| ...+..+...++
T Consensus 272 ~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dY 351 (822)
T 3jux_A 272 SKESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDY 351 (822)
T ss_dssp CCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSE
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcE
Confidence 000 001111110000
Q ss_pred -----------------------------------------------------hhCCCCcEEEEeccCCcchHHHHHHHh
Q psy7952 224 -----------------------------------------------------FTGNSIPIIALTATAEPSVKQDIISVL 250 (444)
Q Consensus 224 -----------------------------------------------------~~~~~~~~v~lSAT~~~~~~~~~~~~l 250 (444)
.|.-..++.+||||.... ...+.+..
T Consensus 352 iV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te-~~Ef~~iY 430 (822)
T 3jux_A 352 VVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTE-ESEFVQVY 430 (822)
T ss_dssp EEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGG-HHHHHHHS
T ss_pred EEECCEEEEEECCCCcCCCCCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchH-HHHHHHHh
Confidence 011223469999999764 45555555
Q ss_pred cCCCCeEEEecCCCCCCceEEE--EEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----
Q psy7952 251 KFNKPYKVFKTSTFRSNLFYDV--IFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----- 323 (444)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----- 323 (444)
++. .+.. +..+|...... ........+...+.+.+..... .+.++||||+|++.++.++..|.+.
T Consensus 431 ~l~---vv~I-Ptnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~----~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~ 502 (822)
T 3jux_A 431 GME---VVVI-PTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYK----KGQPVLVGTTSIEKSELLSSMLKKKGIPHQ 502 (822)
T ss_dssp CCC---EEEC-CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH----HTCCEEEEESSHHHHHHHHHHHHTTTCCCE
T ss_pred CCe---EEEE-CCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhh----CCCCEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 432 2222 33344333322 1222234555555555554321 3678999999999999999999887
Q ss_pred ---cCHHHHHHHHHHHhcCCccEEEEcCccccccccC--------CccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEE
Q psy7952 324 ---VNKHERSRVQESFMRGEINVITATISFGMGIDRQ--------NVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI 392 (444)
Q Consensus 324 ---~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~--------~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 392 (444)
-...+|...+-.+.-+...|+|||+++++|+||+ +..+||+++.|.|.+.|.||+||+||.|.+|.++.
T Consensus 503 vLhgkq~~rE~~ii~~ag~~g~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~ 582 (822)
T 3jux_A 503 VLNAKYHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIF 582 (822)
T ss_dssp EECSCHHHHHHHHHHHHHSTTCEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEE
T ss_pred EeeCCchHHHHHHHHhCCCCCeEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEE
Confidence 2334444444333333457999999999999998 56699999999999999999999999999999999
Q ss_pred Eecccc
Q psy7952 393 YHSEHS 398 (444)
Q Consensus 393 ~~~~~~ 398 (444)
|++.+|
T Consensus 583 fvsleD 588 (822)
T 3jux_A 583 FLSLED 588 (822)
T ss_dssp EEETTS
T ss_pred EechhH
Confidence 998776
No 58
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=1.9e-26 Score=237.32 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=88.2
Q ss_pred CCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCcc---EEEEcCccccccccCCccEEEEe
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEIN---VITATISFGMGIDRQNVRFVVHW 365 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gidi~~~~~Vi~~ 365 (444)
.+.++||||+....++.+...|... ++..+|..+++.|++|... +|++|+++++|+|++++++||++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~ 494 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMF 494 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEEC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEE
Confidence 4789999999999999999999766 8899999999999988654 79999999999999999999999
Q ss_pred CCCCCHHHHHHHhccCCCCCCceeEEE--Eeccc
Q psy7952 366 GMPSSIPAYYQESGRAGRDGLQSYCRI--YHSEH 397 (444)
Q Consensus 366 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 397 (444)
|+|+|+..+.|++||++|.|+...+.+ ++..+
T Consensus 495 d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 495 DPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp SCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 999999999999999999998765443 44444
No 59
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.94 E-value=2e-26 Score=208.93 Aligned_cols=195 Identities=17% Similarity=0.164 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc-----CCccce
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN-----GNVRSR 107 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~-----~~~~~~ 107 (444)
+..+.+++++ +|+.. |+++|.++++.+++| +++++.+|||+|||++ |.+|+ +..+.. .+..++
T Consensus 37 ~~~l~~~l~~-~g~~~-~~~~Q~~~i~~~~~g-~~~l~~apTGsGKT~~--------~~l~~-l~~l~~~~~~~~~~~~~ 104 (242)
T 3fe2_A 37 PANVMDVIAR-QNFTE-PTAIQAQGWPVALSG-LDMVGVAQTGSGKTLS--------YLLPA-IVHINHQPFLERGDGPI 104 (242)
T ss_dssp CHHHHHHHHT-TTCCS-CCHHHHHHHHHHHHT-CCEEEEECTTSCHHHH--------HHHHH-HHHHHTSCCCCTTCCCS
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEECCCcCHHHHH--------HHHHH-HHHHHhccccccCCCCE
Confidence 5677888887 69997 779999999999999 9999999999999999 66666 332322 234457
Q ss_pred eEEEcchhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 185 (444)
+||++|+++|+ .|+.+.++.+ ..+ +.+..++|+.........+. .+++|+|+||+++. ..+..
T Consensus 105 ~lil~Pt~~L~--~Q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~------~~~~I~v~Tp~~l~----~~l~~ 169 (242)
T 3fe2_A 105 CLVLAPTRELA--QQVQQVAAEYCRACR---LKSTCIYGGAPKGPQIRDLE------RGVEICIATPGRLI----DFLEC 169 (242)
T ss_dssp EEEECSSHHHH--HHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHH------HCCSEEEECHHHHH----HHHHH
T ss_pred EEEEeCcHHHH--HHHHHHHHHHHhhcC---ceEEEEECCCChHHHHHHhc------CCCCEEEECHHHHH----HHHHc
Confidence 89999999999 3334445555 445 88889999887765544442 36899999999985 33444
Q ss_pred HHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec
Q psy7952 186 HLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT 261 (444)
Q Consensus 186 ~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~ 261 (444)
....+.+++++|+||||++.+++ |...+.. +++.++++.|++++|||+++...+.+..++ .++..+...
T Consensus 170 ~~~~~~~~~~lViDEah~l~~~~--~~~~~~~---i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l--~~~~~i~~~ 238 (242)
T 3fe2_A 170 GKTNLRRTTYLVLDEADRMLDMG--FEPQIRK---IVDQIRPDRQTLMWSATWPKEVRQLAEDFL--KDYIHINIG 238 (242)
T ss_dssp TSCCCTTCCEEEETTHHHHHHTT--CHHHHHH---HHTTSCSSCEEEEEESCCCHHHHHHHHHHC--SSCEEEEEC
T ss_pred CCCCcccccEEEEeCHHHHhhhC--cHHHHHH---HHHhCCccceEEEEEeecCHHHHHHHHHHC--CCCEEEEec
Confidence 44567789999999999998877 6655554 455666779999999999998887777665 466555443
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=2.2e-26 Score=203.51 Aligned_cols=193 Identities=18% Similarity=0.182 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
..++.++++. +|+.. |+++|.++++.++++ +++++.+|||+|||++ |.+|+ +..+......++++|++
T Consensus 11 ~~~l~~~l~~-~g~~~-~~~~Q~~~i~~~~~~-~~~lv~apTGsGKT~~--------~~~~~-~~~~~~~~~~~~~lil~ 78 (206)
T 1vec_A 11 KRELLMGIFE-MGWEK-PSPIQEESIPIALSG-RDILARAKNGTGKSGA--------YLIPL-LERLDLKKDNIQAMVIV 78 (206)
T ss_dssp CHHHHHHHHT-TTCCS-CCHHHHHHHHHHHTT-CCEEEECCSSSTTHHH--------HHHHH-HHHCCTTSCSCCEEEEC
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHccC-CCEEEECCCCCchHHH--------HHHHH-HHHhcccCCCeeEEEEe
Confidence 5678888887 69987 669999999999999 9999999999999999 66665 33343344446789999
Q ss_pred chhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCC
Q psy7952 113 PILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNK 192 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~ 192 (444)
|+++|+ .|+.+.+..+....+.+.+..+.|+........ ....+++|+|+||+++. ..+......+.+
T Consensus 79 Pt~~L~--~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~i~v~T~~~l~----~~~~~~~~~~~~ 146 (206)
T 1vec_A 79 PTRELA--LQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM------RLDDTVHVVIATPGRIL----DLIKKGVAKVDH 146 (206)
T ss_dssp SCHHHH--HHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH------HTTSCCSEEEECHHHHH----HHHHTTCSCCTT
T ss_pred CcHHHH--HHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH------hcCCCCCEEEeCHHHHH----HHHHcCCcCccc
Confidence 999999 222334444422222378888888877654322 23467899999999974 333333345678
Q ss_pred ccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCe
Q psy7952 193 LAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPY 256 (444)
Q Consensus 193 ~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~ 256 (444)
++++|+||+|++.+.+ +...+. .+...++++.+++++|||+++...+.+..++ .+++
T Consensus 147 ~~~lViDEah~~~~~~--~~~~l~---~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l--~~p~ 203 (206)
T 1vec_A 147 VQMIVLDEADKLLSQD--FVQIME---DIILTLPKNRQILLYSATFPLSVQKFMNSHL--EKPY 203 (206)
T ss_dssp CCEEEEETHHHHTSTT--THHHHH---HHHHHSCTTCEEEEEESCCCHHHHHHHHHHC--SSCE
T ss_pred CCEEEEEChHHhHhhC--cHHHHH---HHHHhCCccceEEEEEeeCCHHHHHHHHHHc--CCCe
Confidence 9999999999987755 554444 4455666679999999999998877777665 3554
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.93 E-value=1.2e-26 Score=208.88 Aligned_cols=195 Identities=16% Similarity=0.167 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
...+.+++++ +|+.. |+++|.++++.+++| +++++.+|||+|||++ |.+|+ +..+...+..+++||++
T Consensus 32 ~~~l~~~l~~-~g~~~-~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~--------~~l~~-l~~l~~~~~~~~~lil~ 99 (230)
T 2oxc_A 32 SRPVLEGLRA-AGFER-PSPVQLKAIPLGRCG-LDLIVQAKSGTGKTCV--------FSTIA-LDSLVLENLSTQILILA 99 (230)
T ss_dssp CHHHHHHHHH-TTCCS-CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHH--------HHHHH-HHHCCTTSCSCCEEEEC
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCCcHHHH--------HHHHH-HHHHHhcCCCceEEEEe
Confidence 5678888887 69997 669999999999999 9999999999999999 66666 44444444556789999
Q ss_pred chhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCC
Q psy7952 113 PILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNK 192 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~ 192 (444)
|+++|+ .|+.+.++.+......+++..++|+.......... .+++|+|+||+++. ..+......+.+
T Consensus 100 Pt~~L~--~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~Iiv~Tp~~l~----~~~~~~~~~~~~ 166 (230)
T 2oxc_A 100 PTREIA--VQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-------KKCHIAVGSPGRIK----QLIELDYLNPGS 166 (230)
T ss_dssp SSHHHH--HHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-------TSCSEEEECHHHHH----HHHHTTSSCGGG
T ss_pred CCHHHH--HHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-------cCCCEEEECHHHHH----HHHhcCCccccc
Confidence 999999 22334444442222248889999988765443322 47899999999974 222223334567
Q ss_pred ccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEE
Q psy7952 193 LAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258 (444)
Q Consensus 193 ~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~ 258 (444)
++++|+||+|++.+++. +...+. .+++.++...|++++|||+++...+.+..+ +.++..+
T Consensus 167 ~~~lViDEah~~~~~~~-~~~~~~---~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~--~~~p~~i 226 (230)
T 2oxc_A 167 IRLFILDEADKLLEEGS-FQEQIN---WIYSSLPASKQMLAVSATYPEFLANALTKY--MRDPTFV 226 (230)
T ss_dssp CCEEEESSHHHHHSTTS-SHHHHH---HHHHHSCSSCEEEEEESCCCHHHHHHHTTT--CSSCEEE
T ss_pred CCEEEeCCchHhhcCcc-hHHHHH---HHHHhCCCCCeEEEEEeccCHHHHHHHHHH--cCCCeEE
Confidence 89999999999987652 555444 445566667899999999988766655444 3455433
No 62
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.93 E-value=9.4e-27 Score=209.29 Aligned_cols=193 Identities=18% Similarity=0.189 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc------CCccc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN------GNVRS 106 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~------~~~~~ 106 (444)
..++.+++++ +|+.. |+++|.++++.+++| +++++.+|||+|||++ |++|+ +..+.. ....+
T Consensus 28 ~~~l~~~l~~-~g~~~-~~~~Q~~~i~~~~~~-~~~l~~apTGsGKT~~--------~~l~~-~~~l~~~~~~~~~~~~~ 95 (228)
T 3iuy_A 28 YPDLLKSIIR-VGILK-PTPIQSQAWPIILQG-IDLIVVAQTGTGKTLS--------YLMPG-FIHLDSQPISREQRNGP 95 (228)
T ss_dssp CHHHHHHHHH-HTCCS-CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHH--------HHHHH-HHHHC---------CCC
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCChHHHH--------HHHHH-HHHHHhccchhhccCCC
Confidence 3567888888 59987 779999999999999 9999999999999999 55555 222221 12445
Q ss_pred eeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 107 RNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 107 ~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
+++|++|+++|+ .|+.+.++.+ ....+.+..+.|+.........+ ..+++|+|+||+++. ..+...
T Consensus 96 ~~lil~Pt~~L~--~q~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~iiv~Tp~~l~----~~~~~~ 161 (228)
T 3iuy_A 96 GMLVLTPTRELA--LHVEAECSKY--SYKGLKSICIYGGRNRNGQIEDI------SKGVDIIIATPGRLN----DLQMNN 161 (228)
T ss_dssp SEEEECSSHHHH--HHHHHHHHHH--CCTTCCEEEECC------CHHHH------HSCCSEEEECHHHHH----HHHHTT
T ss_pred cEEEEeCCHHHH--HHHHHHHHHh--cccCceEEEEECCCChHHHHHHh------cCCCCEEEECHHHHH----HHHHcC
Confidence 789999999999 2234444444 22338888888877655443332 357899999999985 333333
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEE
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~ 258 (444)
...+.++++||+||||++.+++ +...+..+ +...+.+.|++++|||+++...+.+..++ .++..+
T Consensus 162 ~~~~~~~~~lViDEah~~~~~~--~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~l--~~p~~i 226 (228)
T 3iuy_A 162 SVNLRSITYLVIDEADKMLDME--FEPQIRKI---LLDVRPDRQTVMTSATWPDTVRQLALSYL--KDPMIV 226 (228)
T ss_dssp CCCCTTCCEEEECCHHHHHHTT--CHHHHHHH---HHHSCSSCEEEEEESCCCHHHHHHHHTTC--SSCEEE
T ss_pred CcCcccceEEEEECHHHHhccc--hHHHHHHH---HHhCCcCCeEEEEEeeCCHHHHHHHHHHC--CCCEEE
Confidence 4456789999999999998876 66555544 44566679999999999998877665543 455443
No 63
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.93 E-value=7.3e-26 Score=205.90 Aligned_cols=193 Identities=19% Similarity=0.200 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
...+.++++. +|+.. |+++|.++++.++++ +++++.+|||+|||++ |.+++ +..+.......++||++
T Consensus 51 ~~~l~~~l~~-~g~~~-~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~--------~~~~i-l~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 51 TDVLCEACDQ-LGWTK-PTKIQIEAIPLALQG-RDIIGLAETGSGKTGA--------FALPI-LNALLETPQRLFALVLT 118 (249)
T ss_dssp CHHHHHHHHH-TTCCS-CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHH--------HHHHH-HHHHHHSCCSSCEEEEC
T ss_pred CHHHHHHHHH-cCCCC-CCHHHHHHHHHHhCC-CCEEEEcCCCCCchhH--------hHHHH-HHHHhcCCCCceEEEEe
Confidence 4577888887 69987 669999999999999 9999999999999999 66666 44444444455789999
Q ss_pred chhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH-HHHh
Q psy7952 113 PILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ-HLVR 189 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~-~~~~ 189 (444)
|+++|+ .|+.+.++.+ ..+ +.+..+.|+.......... ..+++|+|+||+++. ..+.. ....
T Consensus 119 Ptr~L~--~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~------~~~~~I~v~Tp~~l~----~~l~~~~~~~ 183 (249)
T 3ber_A 119 PTRELA--FQISEQFEALGSSIG---VQSAVIVGGIDSMSQSLAL------AKKPHIIIATPGRLI----DHLENTKGFN 183 (249)
T ss_dssp SSHHHH--HHHHHHHHHHHGGGT---CCEEEECTTSCHHHHHHHH------HTCCSEEEECHHHHH----HHHHHSTTCC
T ss_pred CCHHHH--HHHHHHHHHHhccCC---eeEEEEECCCChHHHHHHh------cCCCCEEEECHHHHH----HHHHcCCCcC
Confidence 999999 3334444444 335 7888899887765443332 357899999999974 22222 2234
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEE
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVF 259 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~ 259 (444)
+.++++||+||||++.+++ +...+.. ++..++.+.+++++|||+++...+.+..++ .++..+.
T Consensus 184 l~~~~~lViDEah~l~~~~--~~~~l~~---i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l--~~p~~i~ 246 (249)
T 3ber_A 184 LRALKYLVMDEADRILNMD--FETEVDK---ILKVIPRDRKTFLFSATMTKKVQKLQRAAL--KNPVKCA 246 (249)
T ss_dssp CTTCCEEEECSHHHHHHTT--CHHHHHH---HHHSSCSSSEEEEEESSCCHHHHHHHHHHC--SSCEEEE
T ss_pred ccccCEEEEcChhhhhccC--hHHHHHH---HHHhCCCCCeEEEEeccCCHHHHHHHHHHC--CCCEEEE
Confidence 6789999999999998776 6655444 445666678999999999998877666554 4665443
No 64
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=1.2e-25 Score=200.95 Aligned_cols=197 Identities=14% Similarity=0.166 Sum_probs=139.6
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
...++.+++++ +|+.. |+++|.++++.++++ +++++.+|||+|||++ |.+++ +..+.......+++|+
T Consensus 21 l~~~l~~~l~~-~g~~~-~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~--------~~~~~-~~~~~~~~~~~~~lil 88 (220)
T 1t6n_A 21 LKPELLRAIVD-CGFEH-PSEVQHECIPQAILG-MDVLCQAKSGMGKTAV--------FVLAT-LQQLEPVTGQVSVLVM 88 (220)
T ss_dssp CCHHHHHHHHH-TTCCC-CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHH--------HHHHH-HHHCCCCTTCCCEEEE
T ss_pred CCHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCCchhhh--------hhHHH-HHhhhccCCCEEEEEE
Confidence 35678888887 69997 669999999999999 8999999999999999 55555 3333333334578999
Q ss_pred cchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhC
Q psy7952 112 SPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYN 191 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~ 191 (444)
+|+++|+ .|+.+.++.+....+.+++..++|+.........+. .+.++|+|+||+++. ..+......+.
T Consensus 89 ~Pt~~L~--~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~~~i~v~T~~~l~----~~~~~~~~~~~ 157 (220)
T 1t6n_A 89 CHTRELA--FQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK-----KNCPHIVVGTPGRIL----ALARNKSLNLK 157 (220)
T ss_dssp CSCHHHH--HHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH-----HSCCSEEEECHHHHH----HHHHTTSSCCT
T ss_pred eCCHHHH--HHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh-----cCCCCEEEeCHHHHH----HHHHhCCCCcc
Confidence 9999999 223444444422222388999999887665544432 245799999999974 22233334467
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeE
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYK 257 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~ 257 (444)
+++++|+||||++.++. .+. ..+..++...+.+.+++++|||+++...+....++ .++..
T Consensus 158 ~~~~lViDEah~~~~~~-~~~---~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~p~~ 217 (220)
T 1t6n_A 158 HIKHFILDECDKMLEQL-DMR---RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFM--QDPME 217 (220)
T ss_dssp TCCEEEEESHHHHHSSH-HHH---HHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTC--SSCEE
T ss_pred cCCEEEEcCHHHHhccc-CcH---HHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHc--CCCeE
Confidence 89999999999987531 144 33445555667678999999999998777555443 45543
No 65
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.93 E-value=2.2e-26 Score=205.47 Aligned_cols=196 Identities=16% Similarity=0.196 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
...+.+++++ +|+.. |+++|.++++.++++ +++++.+|||+|||++ |.+|+ +..+...+...+++|++
T Consensus 12 ~~~l~~~l~~-~g~~~-~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~--------~~~~~-l~~l~~~~~~~~~lil~ 79 (219)
T 1q0u_A 12 QPFIIEAIKT-LRFYK-PTEIQERIIPGALRG-ESMVGQSQTGTGKTHA--------YLLPI-MEKIKPERAEVQAVITA 79 (219)
T ss_dssp CHHHHHHHHH-TTCCS-CCHHHHHHHHHHHHT-CCEEEECCSSHHHHHH--------HHHHH-HHHCCTTSCSCCEEEEC
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCChHHHH--------HHHHH-HHHHHhCcCCceEEEEc
Confidence 4578888887 69998 679999999999999 9999999999999999 66666 44444444456789999
Q ss_pred chhhhhcccCccchHhhhcCCC---CceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHh
Q psy7952 113 PILSSFYLRFRDDKTSIVTGRS---DLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVR 189 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~ 189 (444)
|+++|+ .|+.+.+..+.... ..+.+..+.|+...... ......+++|+|+||+++. ..+......
T Consensus 80 Pt~~L~--~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~Iiv~Tp~~l~----~~l~~~~~~ 147 (219)
T 1q0u_A 80 PTRELA--TQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA------LEKLNVQPHIVIGTPGRIN----DFIREQALD 147 (219)
T ss_dssp SSHHHH--HHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT------TCCCSSCCSEEEECHHHHH----HHHHTTCCC
T ss_pred CcHHHH--HHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH------HHHcCCCCCEEEeCHHHHH----HHHHcCCCC
Confidence 999999 22344444441111 03778888887654322 1222357899999999974 222333344
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEE
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVF 259 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~ 259 (444)
+.+++++|+||||++.+++ +.. .+..++..++.+.+++++|||+++...+.+..++ .+|..+.
T Consensus 148 ~~~~~~lViDEah~~~~~~--~~~---~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~p~~~~ 210 (219)
T 1q0u_A 148 VHTAHILVVDEADLMLDMG--FIT---DVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYM--ENPTFVH 210 (219)
T ss_dssp GGGCCEEEECSHHHHHHTT--CHH---HHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHC--SSCEEEE
T ss_pred cCcceEEEEcCchHHhhhC--hHH---HHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHc--CCCeEEE
Confidence 6788999999999998776 543 3445555677678999999999998887776664 4665443
No 66
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.92 E-value=1e-25 Score=206.47 Aligned_cols=187 Identities=20% Similarity=0.294 Sum_probs=136.9
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC----Cccce
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG----NVRSR 107 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~----~~~~~ 107 (444)
....+.++++. +|+.. ++++|.++++.++.+ +++++++|||+|||++ |++|+ +..+... ....+
T Consensus 61 l~~~l~~~l~~-~g~~~-~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~--------~~l~~-l~~l~~~~~~~~~~~~ 128 (262)
T 3ly5_A 61 VNENTLKAIKE-MGFTN-MTEIQHKSIRPLLEG-RDLLAAAKTGSGKTLA--------FLIPA-VELIVKLRFMPRNGTG 128 (262)
T ss_dssp CCHHHHHHHHH-TTCCB-CCHHHHHHHHHHHHT-CCCEECCCTTSCHHHH--------HHHHH-HHHHHHTTCCGGGCCC
T ss_pred cCHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CcEEEEccCCCCchHH--------HHHHH-HHHHHhccccccCCce
Confidence 46778888988 69998 679999999999999 9999999999999999 66665 3323221 23346
Q ss_pred eEEEcchhhhhcccCccchHhhh-c-CCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIV-T-GRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 185 (444)
++|++||++|+ .|+.+.+ . .....+.+..+.|+.........+ ..+++|+|+||+++. ..+..
T Consensus 129 ~lil~Pt~~La-----~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Iiv~Tp~~l~----~~~~~ 193 (262)
T 3ly5_A 129 VLILSPTRELA-----MQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL------GNGINIIVATPGRLL----DHMQN 193 (262)
T ss_dssp EEEECSSHHHH-----HHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH------HHCCSEEEECHHHHH----HHHHH
T ss_pred EEEEeCCHHHH-----HHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh------cCCCCEEEEcHHHHH----HHHHc
Confidence 79999999999 5555544 1 112227788888887765443333 236899999999974 22222
Q ss_pred H-HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHh
Q psy7952 186 H-LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVL 250 (444)
Q Consensus 186 ~-~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l 250 (444)
. ...+.++++||+||||++.+++ +...+..+ +..++...|+++||||+++...+.....+
T Consensus 194 ~~~~~~~~l~~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 194 TPGFMYKNLQCLVIDEADRILDVG--FEEELKQI---IKLLPTRRQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp CTTCCCTTCCEEEECSHHHHHHTT--CHHHHHHH---HHHSCSSSEEEEECSSCCHHHHHHHHHHC
T ss_pred cCCcccccCCEEEEcChHHHhhhh--HHHHHHHH---HHhCCCCCeEEEEEecCCHHHHHHHHHHc
Confidence 2 2346789999999999998877 66555544 45667778999999999998877665554
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.92 E-value=4.5e-26 Score=204.27 Aligned_cols=192 Identities=16% Similarity=0.229 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
...+.+.++. +|+.. ++++|.++++.++++ +++++.+|||+|||++ |.+++ ++.+......++++|++
T Consensus 22 ~~~l~~~l~~-~g~~~-~~~~Q~~~i~~~~~~-~~~lv~~pTGsGKT~~--------~~~~~-l~~l~~~~~~~~~lil~ 89 (224)
T 1qde_A 22 DENLLRGVFG-YGFEE-PSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGT--------FSIAA-LQRIDTSVKAPQALMLA 89 (224)
T ss_dssp CHHHHHHHHH-HTCCS-CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHH--------HHHHH-HHHCCTTCCSCCEEEEC
T ss_pred CHHHHHHHHH-CCCCC-CcHHHHHHHHHHhcC-CCEEEECCCCCcHHHH--------HHHHH-HHHHhccCCCceEEEEE
Confidence 5678888887 59987 669999999999999 9999999999999999 66666 44444444456789999
Q ss_pred chhhhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhh
Q psy7952 113 PILSSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRY 190 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~ 190 (444)
|+++|+ .|+.+.+..+ ..+ +.+..++|+......... ...++|+|+||+++. ..+......+
T Consensus 90 Pt~~L~--~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~-------~~~~~iiv~Tp~~l~----~~~~~~~~~~ 153 (224)
T 1qde_A 90 PTRELA--LQIQKVVMALAFHMD---IKVHACIGGTSFVEDAEG-------LRDAQIVVGTPGRVF----DNIQRRRFRT 153 (224)
T ss_dssp SSHHHH--HHHHHHHHHHTTTSC---CCEEEECC-----------------CTTCSEEEECHHHHH----HHHHTTSSCC
T ss_pred CCHHHH--HHHHHHHHHHhcccC---ceEEEEeCCcchHHHHhc-------CCCCCEEEECHHHHH----HHHHhCCcch
Confidence 999999 2234444444 234 788888887665433221 134899999999974 3333334446
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEE
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVF 259 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~ 259 (444)
.++++||+||||++.+++ +...+. .+....+.+.+++++|||+++...+.+..++ .++..+.
T Consensus 154 ~~~~~iViDEah~~~~~~--~~~~l~---~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~p~~i~ 215 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSG--FKEQIY---QIFTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRIL 215 (224)
T ss_dssp TTCCEEEEETHHHHHHTT--CHHHHH---HHHHHSCTTCEEEEEESSCCHHHHHHHHHHC--SSCEEEC
T ss_pred hhCcEEEEcChhHHhhhh--hHHHHH---HHHHhCCccCeEEEEEeecCHHHHHHHHHHC--CCCEEEE
Confidence 789999999999998766 554444 4445566678999999999998877776664 4554443
No 68
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.92 E-value=8.6e-26 Score=210.83 Aligned_cols=194 Identities=15% Similarity=0.183 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHcc-CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLR-THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWI 111 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~-~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil 111 (444)
...+.+++.. +||.. ||++|.++++.++.+ .+++++++|||+|||++ |++|+ +..+...+..+++||+
T Consensus 100 ~~~l~~~l~~-~g~~~-pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a--------~~lp~-l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 100 KPQLLQGVYA-MGFNR-PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA--------FVLAM-LSQVEPANKYPQCLCL 168 (300)
T ss_dssp CHHHHHHHHH-TTCCS-CCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHH--------HHHHH-HHHCCTTSCSCCEEEE
T ss_pred CHHHHHHHHH-cCCCC-CCHHHHHHHHHHHcCCCCeEEEECCCCCCccHH--------HHHHH-HHhhhccCCCceEEEE
Confidence 5678888887 69998 889999999999986 48999999999999999 77777 5555555666688999
Q ss_pred cchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH-HHHhh
Q psy7952 112 SPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ-HLVRY 190 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~-~~~~~ 190 (444)
+||++|+ .|+.+.+..+......+.+....++...... ....++|+|+||+++. ..+.. ....+
T Consensus 169 ~PtreLa--~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~IlV~TP~~l~----~~l~~~~~~~l 233 (300)
T 3fmo_B 169 SPTYELA--LQTGKVIEQMGKFYPELKLAYAVRGNKLERG---------QKISEQIVIGTPGTVL----DWCSKLKFIDP 233 (300)
T ss_dssp CSSHHHH--HHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---------CCCCCSEEEECHHHHH----HHHTTTCCCCG
T ss_pred cCcHHHH--HHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---------hcCCCCEEEECHHHHH----HHHHhcCCCCh
Confidence 9999999 3334455555322233778888877654321 1356799999999974 22212 23346
Q ss_pred CCccEEEEeccccccc-cCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEE
Q psy7952 191 NKLAYIVVDEAHCVSE-WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVF 259 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~ 259 (444)
.++++||+||+|++.+ .+ +...+. .+...++.++|++++|||+++...+....++ .++..+.
T Consensus 234 ~~l~~lVlDEad~l~~~~~--~~~~~~---~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l--~~p~~i~ 296 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQG--HQDQSI---RIQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIK 296 (300)
T ss_dssp GGCSEEEETTHHHHHHSTT--HHHHHH---HHHTTSCTTCEEEEEESCCCHHHHHHHHHHS--SSCEEEE
T ss_pred hhceEEEEeCHHHHhhccC--cHHHHH---HHHHhCCCCCEEEEEeccCCHHHHHHHHHHC--CCCeEEE
Confidence 7899999999999986 44 554444 4455667779999999999998887666654 4665443
No 69
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.92 E-value=2.7e-25 Score=196.59 Aligned_cols=189 Identities=20% Similarity=0.223 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc---CCccceeE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN---GNVRSRNG 109 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~---~~~~~~vl 109 (444)
.+++.+++++ +|+.. |+++|.++++.++++ +++++.+|||+|||++ |.+++ +..+.. .+..++++
T Consensus 9 ~~~l~~~l~~-~~~~~-~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~--------~~~~~-~~~l~~~~~~~~~~~~l 76 (207)
T 2gxq_A 9 KPEILEALHG-RGLTT-PTPIQAAALPLALEG-KDLIGQARTGTGKTLA--------FALPI-AERLAPSQERGRKPRAL 76 (207)
T ss_dssp CHHHHHHHHH-TTCCS-CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHH--------HHHHH-HHHCCCCCCTTCCCSEE
T ss_pred CHHHHHHHHH-cCCCC-CCHHHHHHHHHHcCC-CCEEEECCCCChHHHH--------HHHHH-HHHHhhccccCCCCcEE
Confidence 4677888887 69987 679999999999999 9999999999999999 44544 222322 23446789
Q ss_pred EEcchhhhhcccCccchHhhh---cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 110 WISPILSSFYLRFRDDKTSIV---TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 110 il~P~~~L~~~~q~~~~~~~l---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
|++|+++|+ .+..+.+ ... +++..++|+.......... ..+++|+|+||+++. ..+...
T Consensus 77 il~P~~~L~-----~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~i~v~T~~~l~----~~~~~~ 138 (207)
T 2gxq_A 77 VLTPTRELA-----LQVASELTAVAPH---LKVVAVYGGTGYGKQKEAL------LRGADAVVATPGRAL----DYLRQG 138 (207)
T ss_dssp EECSSHHHH-----HHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHH------HHCCSEEEECHHHHH----HHHHHT
T ss_pred EEECCHHHH-----HHHHHHHHHHhhc---ceEEEEECCCChHHHHHHh------hCCCCEEEECHHHHH----HHHHcC
Confidence 999999999 5555555 333 7788888887665443333 237899999999974 333333
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEE
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~ 258 (444)
...+.+++++|+||||++.+++ +...+. .++...+.+.+++++|||+++...+....++ .++..+
T Consensus 139 ~~~~~~~~~iViDEah~~~~~~--~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~p~~i 203 (207)
T 2gxq_A 139 VLDLSRVEVAVLDEADEMLSMG--FEEEVE---ALLSATPPSRQTLLFSATLPSWAKRLAERYM--KNPVLI 203 (207)
T ss_dssp SSCCTTCSEEEEESHHHHHHTT--CHHHHH---HHHHTSCTTSEEEEECSSCCHHHHHHHHHHC--SSCEEE
T ss_pred CcchhhceEEEEEChhHhhccc--hHHHHH---HHHHhCCccCeEEEEEEecCHHHHHHHHHHc--CCCeEE
Confidence 4456789999999999987766 554444 4455666678999999999988776665554 455443
No 70
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.92 E-value=6.9e-26 Score=204.75 Aligned_cols=195 Identities=16% Similarity=0.178 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEc
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWIS 112 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~ 112 (444)
...+.++++. +|+.. |+++|.++++.++++ +++++.+|||+|||++ |.+++ +..+.......++||++
T Consensus 38 ~~~l~~~l~~-~g~~~-~~~~Q~~ai~~i~~~-~~~li~apTGsGKT~~--------~~l~~-l~~l~~~~~~~~~lil~ 105 (237)
T 3bor_A 38 KESLLRGIYA-YGFEK-PSAIQQRAIIPCIKG-YDVIAQAQSGTGKTAT--------FAISI-LQQLEIEFKETQALVLA 105 (237)
T ss_dssp CHHHHHHHHH-HTCCS-CCHHHHHHHHHHHTT-CCEEECCCSSHHHHHH--------HHHHH-HHHCCTTSCSCCEEEEC
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCCcHHHH--------HHHHH-HHHHHhcCCCceEEEEE
Confidence 5677788876 69997 679999999999999 9999999999999999 66666 43343333445789999
Q ss_pred chhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCC
Q psy7952 113 PILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNK 192 (444)
Q Consensus 113 P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~ 192 (444)
|+++|+ .|+.+.++.+.. ...+.+..+.|+.........+. .+.++|+|+||+++. ..+......+.+
T Consensus 106 Pt~~L~--~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~l~-----~~~~~Ilv~Tp~~l~----~~l~~~~~~~~~ 173 (237)
T 3bor_A 106 PTRELA--QQIQKVILALGD-YMGATCHACIGGTNVRNEMQKLQ-----AEAPHIVVGTPGRVF----DMLNRRYLSPKW 173 (237)
T ss_dssp SSHHHH--HHHHHHHHHHTT-TTTCCEEEECC------------------CCCSEEEECHHHHH----HHHHTTSSCSTT
T ss_pred CcHHHH--HHHHHHHHHHhh-hcCceEEEEECCCchHHHHHHHh-----cCCCCEEEECHHHHH----HHHHhCCcCccc
Confidence 999999 222333443311 11267777777765433222111 234899999999974 333333345678
Q ss_pred ccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEE
Q psy7952 193 LAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258 (444)
Q Consensus 193 ~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~ 258 (444)
+++||+||||++.+++ +...+ ..+++.++...+++++|||+++...+.+..++ .++..+
T Consensus 174 ~~~lViDEah~~~~~~--~~~~l---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l--~~p~~i 232 (237)
T 3bor_A 174 IKMFVLDEADEMLSRG--FKDQI---YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFM--RDPIRI 232 (237)
T ss_dssp CCEEEEESHHHHHHTT--CHHHH---HHHHHHSCTTCEEEEECSSCCHHHHHHHHHHC--SSCEEE
T ss_pred CcEEEECCchHhhccC--cHHHH---HHHHHhCCCCCeEEEEEEecCHHHHHHHHHHC--CCCEEE
Confidence 9999999999998766 55444 34455566678999999999998887776665 355544
No 71
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.91 E-value=4e-25 Score=199.68 Aligned_cols=193 Identities=19% Similarity=0.224 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc----CCccce
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN----GNVRSR 107 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~----~~~~~~ 107 (444)
....+.+++++ +|+.. |+++|.++++.++++ +++++.+|||+|||++ |.+|+ +..+.. ....++
T Consensus 32 l~~~l~~~l~~-~~~~~-~~~~Q~~~i~~~~~~-~~~li~a~TGsGKT~~--------~~~~~-l~~l~~~~~~~~~~~~ 99 (236)
T 2pl3_A 32 LSKKTLKGLQE-AQYRL-VTEIQKQTIGLALQG-KDVLGAAKTGSGKTLA--------FLVPV-LEALYRLQWTSTDGLG 99 (236)
T ss_dssp CCHHHHHHHHH-TTCCB-CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHH--------HHHHH-HHHHHHTTCCGGGCCC
T ss_pred CCHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEEeCCCCcHHHH--------HHHHH-HHHHHhhcccccCCce
Confidence 35677888887 59998 679999999999999 9999999999999999 66665 333322 123457
Q ss_pred eEEEcchhhhhcccCccchHhhh-cC-CCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIV-TG-RSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 185 (444)
++|++|+++|+ .|+.+.+ .. ....+.+..++|+.......... .+++|+|+||+++. ..+..
T Consensus 100 ~lil~Pt~~L~-----~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~iiv~Tp~~l~----~~l~~ 163 (236)
T 2pl3_A 100 VLIISPTRELA-----YQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-------NNINILVCTPGRLL----QHMDE 163 (236)
T ss_dssp EEEECSSHHHH-----HHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-------TTCSEEEECHHHHH----HHHHH
T ss_pred EEEEeCCHHHH-----HHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-------CCCCEEEECHHHHH----HHHHh
Confidence 89999999999 4444444 11 11227888888887655433322 47899999999974 22222
Q ss_pred H-HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEE
Q psy7952 186 H-LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVF 259 (444)
Q Consensus 186 ~-~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~ 259 (444)
. .....+++++|+||+|++.+++ +... +..++..++.+.+++++|||+++...+....+ +.++..+.
T Consensus 164 ~~~~~~~~~~~lViDEah~~~~~~--~~~~---~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~p~~i~ 231 (236)
T 2pl3_A 164 TVSFHATDLQMLVLDEADRILDMG--FADT---MNAVIENLPKKRQTLLFSATQTKSVKDLARLS--LKNPEYVW 231 (236)
T ss_dssp CSSCCCTTCCEEEETTHHHHHHTT--THHH---HHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS--CSSCEEEE
T ss_pred cCCcccccccEEEEeChHHHhcCC--cHHH---HHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh--CCCCEEEE
Confidence 1 2345688999999999998876 5544 44455567777899999999998876644443 45665554
No 72
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.91 E-value=2.4e-25 Score=203.31 Aligned_cols=197 Identities=18% Similarity=0.205 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccC---------Cc
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNG---------NV 104 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~---------~~ 104 (444)
..+.++++. +|+.. |+++|.++++.++++ +++++.+|||+|||++ |++|+ +..+... ..
T Consensus 32 ~~l~~~l~~-~g~~~-~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~--------~~~~~-l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 32 PTIRNNILL-ASYQR-PTPIQKNAIPAILEH-RDIMACAQTGSGKTAA--------FLIPI-INHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CSTTTTTTT-TTCCS-CCHHHHHHHHHHHTT-CCEEEECCTTSSHHHH--------HHHHH-HHHHHTTCC------CCB
T ss_pred HHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCChHHHH--------HHHHH-HHHHHhhccccccccccC
Confidence 345566665 59987 679999999999999 9999999999999999 56655 3333221 22
Q ss_pred cceeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 105 RSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 105 ~~~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.+++||++|+++|+ .|+.+.+..+.. ...+.+..+.|+......... +..+++|+|+||+++. ..+.
T Consensus 100 ~~~~lil~Pt~~L~--~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~------~~~~~~Ivv~Tp~~l~----~~l~ 166 (253)
T 1wrb_A 100 YPKCLILAPTRELA--IQILSESQKFSL-NTPLRSCVVYGGADTHSQIRE------VQMGCHLLVATPGRLV----DFIE 166 (253)
T ss_dssp CCSEEEECSSHHHH--HHHHHHHHHHHT-TSSCCEEEECSSSCSHHHHHH------HSSCCSEEEECHHHHH----HHHH
T ss_pred CceEEEEECCHHHH--HHHHHHHHHHhc-cCCceEEEEECCCCHHHHHHH------hCCCCCEEEECHHHHH----HHHH
Confidence 35789999999999 222344444411 112778888888765543322 2467899999999974 3333
Q ss_pred HHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCC--CCcEEEEeccCCcchHHHHHHHhcCCCCeEEEe
Q psy7952 185 QHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGN--SIPIIALTATAEPSVKQDIISVLKFNKPYKVFK 260 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~ 260 (444)
.....+.+++++|+||||++.+++ +...+..+...+. .+. +.|++++|||+++...+....++ .++..+..
T Consensus 167 ~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~~-~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~ 239 (253)
T 1wrb_A 167 KNKISLEFCKYIVLDEADRMLDMG--FEPQIRKIIEESN-MPSGINRQTLMFSATFPKEIQKLAADFL--YNYIFMTV 239 (253)
T ss_dssp TTSBCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHSSC-CCCGGGCEEEEEESSCCHHHHHHHHHHC--SSCEEEEE
T ss_pred cCCCChhhCCEEEEeCHHHHHhCc--hHHHHHHHHhhcc-CCCCCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEEEE
Confidence 333456788999999999998876 6666555543211 232 47899999999998777666654 35554443
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.1e-25 Score=202.69 Aligned_cols=199 Identities=20% Similarity=0.205 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc-CCccceeEEE
Q psy7952 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN-GNVRSRNGWI 111 (444)
Q Consensus 33 ~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~-~~~~~~vlil 111 (444)
...+.+++.+ +|+.. |+++|.++++.+++| +++++.+|||+|||++ |.+|+ +..+.. .+...+++|+
T Consensus 37 ~~~l~~~l~~-~g~~~-~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~--------~~l~~-l~~l~~~~~~~~~~lil 104 (245)
T 3dkp_A 37 NSRLLQNILD-AGFQM-PTPIQMQAIPVMLHG-RELLASAPTGSGKTLA--------FSIPI-LMQLKQPANKGFRALII 104 (245)
T ss_dssp CHHHHHHHHH-TTCCS-CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHH--------HHHHH-HHHHCSCCSSSCCEEEE
T ss_pred CHHHHHHHHH-CCCCC-CCHHHHHHHHHHhCC-CCEEEECCCCCcHHHH--------HHHHH-HHHHhhcccCCceEEEE
Confidence 4567788887 59997 679999999999999 9999999999999999 66666 333332 2344578999
Q ss_pred cchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH---HH
Q psy7952 112 SPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH---LV 188 (444)
Q Consensus 112 ~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~---~~ 188 (444)
+|+++|+ .|+.+.+..+.. ...+.+..++++....... ......+++|+|+||+++. . .+.. ..
T Consensus 105 ~Pt~~L~--~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~I~v~Tp~~l~----~-~l~~~~~~~ 171 (245)
T 3dkp_A 105 SPTRELA--SQIHRELIKISE-GTGFRIHMIHKAAVAAKKF-----GPKSSKKFDILVTTPNRLI----Y-LLKQDPPGI 171 (245)
T ss_dssp CSSHHHH--HHHHHHHHHHTT-TSCCCEECCCHHHHHHTTT-----STTSCCCCCEEEECHHHHH----H-HHHSSSCSC
T ss_pred eCCHHHH--HHHHHHHHHHhc-ccCceEEEEecCccHHHHh-----hhhhcCCCCEEEECHHHHH----H-HHHhCCCCc
Confidence 9999999 222333333311 1125665555432211100 0112457899999999974 2 2322 23
Q ss_pred hhCCccEEEEeccccccccC-CCcHHHHHHHHHHHHhh-CCCCcEEEEeccCCcchHHHHHHHhcCCCCeEEEec
Q psy7952 189 RYNKLAYIVVDEAHCVSEWG-HDFRPTYRRLGELRQFT-GNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT 261 (444)
Q Consensus 189 ~~~~~~~iViDE~H~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~ 261 (444)
.+.++++||+||||++.+++ ..+...+..+ +... +.+.++++||||+++...+.....+ .++..+...
T Consensus 172 ~~~~~~~lViDEah~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l--~~p~~i~~~ 241 (245)
T 3dkp_A 172 DLASVEWLVVDESDKLFEDGKTGFRDQLASI---FLACTSHKVRRAMFSATFAYDVEQWCKLNL--DNVISVSIG 241 (245)
T ss_dssp CCTTCCEEEESSHHHHHHHC--CHHHHHHHH---HHHCCCTTCEEEEEESSCCHHHHHHHHHHS--SSCEEEEEC
T ss_pred ccccCcEEEEeChHHhcccccccHHHHHHHH---HHhcCCCCcEEEEEeccCCHHHHHHHHHhC--CCCEEEEeC
Confidence 46789999999999998754 2355544444 3333 3458999999999988777666554 466655543
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=2.5e-22 Score=206.50 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=96.5
Q ss_pred CCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCC-
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGM- 367 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~- 367 (444)
.+.++||||+|+..++.+++.|... +++.+|..+++.|+.|+.+|||||+++++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4679999999999999999999876 88999999999999999999999999999999999999999997
Q ss_pred ----CCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHH
Q psy7952 368 ----PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405 (444)
Q Consensus 368 ----p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 405 (444)
|.|...|+||+||+||.+ .|.+++++++.+....+.+
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 899999999999999994 7999999988766544444
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=3.4e-22 Score=202.70 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=103.5
Q ss_pred HHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchh
Q psy7952 36 LTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPIL 115 (444)
Q Consensus 36 ~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~ 115 (444)
+.++-++.+|+. |+++|..+++.+++| + +..++||+|||++ +.+|+++..+ .+ ..++|++||+
T Consensus 68 vREAs~R~lG~~--Pt~VQ~~~ip~LlqG-~--IaeakTGeGKTLv--------f~Lp~~L~aL-~G---~qv~VvTPTr 130 (997)
T 2ipc_A 68 TRESAKRYLGMR--HFDVQLIGGAVLHEG-K--IAEMKTGEGKTLV--------ATLAVALNAL-TG---KGVHVVTVND 130 (997)
T ss_dssp HHHHHHHHTCCC--CCHHHHHHHHHHHTT-S--EEECCSTHHHHHH--------HHHHHHHHHT-TC---SCCEEEESSH
T ss_pred HHHHHHHHhCCC--CcHHHHhhcccccCC-c--eeeccCCCchHHH--------HHHHHHHHHH-hC---CCEEEEeCCH
Confidence 456777788994 688999999999999 5 8999999999999 6666622222 22 3469999999
Q ss_pred hhhcccCccchHhhh--cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHH------
Q psy7952 116 SSFYLRFRDDKTSIV--TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHL------ 187 (444)
Q Consensus 116 ~L~~~~q~~~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~------ 187 (444)
.|+ .|..+.+..+ ..+ +++..+.|+.+...+...+ .++|+|+||..|. |+.+..+.
T Consensus 131 eLA--~Qdae~m~~l~~~lG---Lsv~~i~Gg~~~~~r~~ay--------~~DIvyGTpgrlg---fDyLrd~m~~~~~~ 194 (997)
T 2ipc_A 131 YLA--RRDAEWMGPVYRGLG---LSVGVIQHASTPAERRKAY--------LADVTYVTNSELG---FDYLRDNMAISPDQ 194 (997)
T ss_dssp HHH--HHHHHHHHHHHHTTT---CCEEECCTTCCHHHHHHHH--------TSSEEEEEHHHHH---HHHHHHTSCSSTTT
T ss_pred HHH--HHHHHHHHHHHHhcC---CeEEEEeCCCCHHHHHHHc--------CCCEEEECchhhh---hHHHHHhhhcchhh
Confidence 999 4446666666 567 9999999998765444433 5899999999974 35555443
Q ss_pred HhhC---CccEEEEecccccc
Q psy7952 188 VRYN---KLAYIVVDEAHCVS 205 (444)
Q Consensus 188 ~~~~---~~~~iViDE~H~~~ 205 (444)
..+. ++.++|+||+|.++
T Consensus 195 l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 195 LVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CCSCSSSSSCEEEETTHHHHT
T ss_pred cccccCCCcceEEEechHHHH
Confidence 2356 89999999999985
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.88 E-value=1.1e-21 Score=166.26 Aligned_cols=137 Identities=26% Similarity=0.432 Sum_probs=116.1
Q ss_pred CCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHH
Q psy7952 264 FRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQ 333 (444)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~ 333 (444)
..+++...+.... ...+...+.+++... .++++||||+++++++.++..|... +++.+|..++
T Consensus 6 ~~~~i~~~~~~~~-~~~K~~~L~~ll~~~------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~ 78 (163)
T 2hjv_A 6 TTRNIEHAVIQVR-EENKFSLLKDVLMTE------NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVM 78 (163)
T ss_dssp CCCCEEEEEEECC-GGGHHHHHHHHHHHH------CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CcccceEEEEECC-hHHHHHHHHHHHHhc------CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 3455555555543 244555555555442 4679999999999999999999876 8899999999
Q ss_pred HHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 334 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
+.|++|+.++||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++++.+.+...+..+.+
T Consensus 79 ~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 152 (163)
T 2hjv_A 79 NEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 152 (163)
T ss_dssp HHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred HHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888877776644
No 77
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=167.72 Aligned_cols=136 Identities=23% Similarity=0.343 Sum_probs=109.4
Q ss_pred CCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHH
Q psy7952 266 SNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQES 335 (444)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~ 335 (444)
+++...+...+....+. ..+..++... ..+++||||+++.+++.++..|... +++.+|..+++.
T Consensus 6 ~~i~q~~~~~~~~~~K~----~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~ 79 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKY----QALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQR 79 (175)
T ss_dssp CCEEEEEEECSSHHHHH----HHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHH
T ss_pred CCceEEEEEcCChHhHH----HHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHH
Confidence 34455555444333333 3344444433 4679999999999999999999876 889999999999
Q ss_pred HhcCCccEEEEcCccccccccCCccEEEEeCCC------CCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 336 FMRGEINVITATISFGMGIDRQNVRFVVHWGMP------SSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 336 f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
|++|+.++||||+++++|+|+|++++||++|+| .+...|+||+||+||.|+.|.+++++.+.+...+..+.+
T Consensus 80 f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~ 157 (175)
T 2rb4_A 80 FRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQD 157 (175)
T ss_dssp HHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHH
T ss_pred HHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999999999999999999888776666643
No 78
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.87 E-value=1.6e-21 Score=165.68 Aligned_cols=121 Identities=22% Similarity=0.453 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCcc
Q psy7952 281 SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISF 350 (444)
Q Consensus 281 ~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~ 350 (444)
+...+.+++.. . .++++||||++++.++.++..|... ++..+|..+++.|++|+.++||||+++
T Consensus 17 K~~~l~~ll~~----~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 90 (165)
T 1fuk_A 17 KYECLTDLYDS----I--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 90 (165)
T ss_dssp HHHHHHHHHHH----T--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGG
T ss_pred HHHHHHHHHHh----C--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChh
Confidence 55555554444 2 4689999999999999999999875 889999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 351 GMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 351 ~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
++|+|+|++++||++|+|.+...|+||+||+||.|+.|.+++++.+.+...+..+.+
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 147 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 147 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888777666643
No 79
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.86 E-value=4.7e-21 Score=169.49 Aligned_cols=123 Identities=26% Similarity=0.474 Sum_probs=106.9
Q ss_pred hhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcC
Q psy7952 279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATI 348 (444)
Q Consensus 279 ~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~ 348 (444)
..+...+.+++... .++++||||+++.+++.++..|... +++.+|..+++.|++|..+|||||+
T Consensus 16 ~~k~~~l~~ll~~~------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 16 RGRLEVLSDLLYVA------SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp TSHHHHHHHHHHHH------CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred HHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 34444454544432 4789999999999999999999876 8899999999999999999999999
Q ss_pred ccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 349 SFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 349 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
++++|+|+|++++||++|+|.|...|+||+||+||.|+.|.+++++++.+...+..+.+
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~ 148 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALER 148 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHH
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988777766643
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=166.66 Aligned_cols=133 Identities=20% Similarity=0.376 Sum_probs=105.6
Q ss_pred CCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHH
Q psy7952 265 RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQE 334 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~ 334 (444)
..++...+..... ..+. ..+.+++.. .++++||||+++..++.++..|... +++.+|..+++
T Consensus 27 ~~~i~q~~~~~~~-~~K~----~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 98 (191)
T 2p6n_A 27 SLDVIQEVEYVKE-EAKM----VYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIE 98 (191)
T ss_dssp -CCSEEEEEECCG-GGHH----HHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHH
T ss_pred CcCceEEEEEcCh-HHHH----HHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH
Confidence 4455555554432 2333 334444443 2568999999999999999999865 88999999999
Q ss_pred HHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEeccc-chhhHHHH
Q psy7952 335 SFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH-SKKSLEYV 405 (444)
Q Consensus 335 ~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~ 405 (444)
.|++|+.+|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.|.+++++.+. +...+..+
T Consensus 99 ~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l 170 (191)
T 2p6n_A 99 AFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDL 170 (191)
T ss_dssp HHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHH
T ss_pred HHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876 44444443
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.86 E-value=6.5e-21 Score=164.74 Aligned_cols=138 Identities=20% Similarity=0.383 Sum_probs=104.6
Q ss_pred CCCCceEEEEEcccchhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHH
Q psy7952 264 FRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQ 333 (444)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~ 333 (444)
..+++...+..... ..+...+.+++.. . ..+.++||||+++..++.++..|... ++..+|..++
T Consensus 16 ~~~~i~q~~~~v~~-~~K~~~L~~ll~~----~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~ 89 (185)
T 2jgn_A 16 TSENITQKVVWVEE-SDKRSFLLDLLNA----T-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 89 (185)
T ss_dssp CCTTEEEEEEECCG-GGHHHHHHHHHHH----C--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHH
T ss_pred CCCCceEEEEEeCc-HHHHHHHHHHHHh----c-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHH
Confidence 34566655555442 3444444444443 2 15789999999999999999999876 7889999999
Q ss_pred HHHhcCCccEEEEcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 334 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
+.|++|+.+|||||+++++|+|+|++++||++|+|+|...|+||+||+||.|+.|.+++++.+.+...++.+.+
T Consensus 90 ~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 90 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp HHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHH
T ss_pred HHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888877776654
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.86 E-value=1.5e-21 Score=166.73 Aligned_cols=121 Identities=22% Similarity=0.353 Sum_probs=104.4
Q ss_pred hhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcC
Q psy7952 279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATI 348 (444)
Q Consensus 279 ~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~ 348 (444)
..+...+.+++.. . .+.++||||+++.+++.++..|... +++.+|..+++.|++|+.++||||+
T Consensus 16 ~~K~~~L~~ll~~----~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 16 NEKNRKLFDLLDV----L--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp GGHHHHHHHHHHH----S--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred HHHHHHHHHHHHh----C--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 3444444444443 2 4679999999999999999999875 8899999999999999999999999
Q ss_pred ccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccc-hhhHHHH
Q psy7952 349 SFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS-KKSLEYV 405 (444)
Q Consensus 349 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~~ 405 (444)
++++|+|+|++++||++|+|+|...|+||+||+||.|+.|.+++++.+.+ ...++.+
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l 147 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV 147 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHH
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998754 3444444
No 83
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.84 E-value=1.3e-20 Score=189.84 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----cCHHHHHHHHHHHhcCCccEEE--EcCccccccc
Q psy7952 283 AHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-----VNKHERSRVQESFMRGEINVIT--ATISFGMGID 355 (444)
Q Consensus 283 ~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-----~~~~~r~~~~~~f~~g~~~vLv--aT~~~~~Gid 355 (444)
..+.+.+..++.. ..+.++||++|...++.+++.+... -....+..+++.|+.+. .||+ +|+.+++|||
T Consensus 370 ~~~~~~l~~~~~~---~~g~~lvff~S~~~~~~v~~~l~~~~~~~q~~~~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD 445 (540)
T 2vl7_A 370 PIYSILLKRIYEN---SSKSVLVFFPSYEMLESVRIHLSGIPVIEENKKTRHEEVLELMKTGK-YLVMLVMRAKESEGVE 445 (540)
T ss_dssp HHHHHHHHHHHHT---CSSEEEEEESCHHHHHHHHTTCTTSCEEESTTTCCHHHHHHHHHTSC-CEEEEEC---------
T ss_pred HHHHHHHHHHHHh---CCCCEEEEeCCHHHHHHHHHHhccCceEecCCCCcHHHHHHHHhcCC-eEEEEEecCceeccee
Confidence 4455556665543 4678999999999999999888653 11247889999998864 5666 8899999999
Q ss_pred cCC----ccEEEEeCCCCC------------------------------HHHHHHHhccCCCCCCceeEEEEecc
Q psy7952 356 RQN----VRFVVHWGMPSS------------------------------IPAYYQESGRAGRDGLQSYCRIYHSE 396 (444)
Q Consensus 356 i~~----~~~Vi~~~~p~s------------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~ 396 (444)
+|+ +++||+++.|.. ...+.|.+||+-|...+--+++++++
T Consensus 446 ~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 446 FREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp ------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred cCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 997 889999998852 13357999999998544334555554
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.83 E-value=5.9e-20 Score=170.08 Aligned_cols=121 Identities=27% Similarity=0.473 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCc
Q psy7952 280 DSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATIS 349 (444)
Q Consensus 280 ~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~ 349 (444)
.+...+.+++... .++++||||+++++++.++..|... +++.+|..+++.|++|..+|||||++
T Consensus 14 ~K~~~L~~ll~~~------~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v 87 (300)
T 3i32_A 14 GRLEVLSDLLYVA------SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV 87 (300)
T ss_dssp SHHHHHHHHHHHH------CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST
T ss_pred HHHHHHHHHHHhc------CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech
Confidence 4444455544442 4789999999999999999999876 88999999999999999999999999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHH
Q psy7952 350 FGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 406 (444)
Q Consensus 350 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 406 (444)
+++|+|+|++++||++|.|.|...|+||+||+||.|+.|.|++++++.+...+..+.
T Consensus 88 a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie 144 (300)
T 3i32_A 88 AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALE 144 (300)
T ss_dssp TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHH
T ss_pred hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877666654
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.71 E-value=6.6e-22 Score=168.86 Aligned_cols=109 Identities=28% Similarity=0.397 Sum_probs=100.8
Q ss_pred CCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCCC
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMP 368 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~p 368 (444)
.++++||||+++.+++.++..|... +++.+|..+++.|++|+.++||||+++++|+|+|++++||++|+|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p 108 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMP 108 (170)
Confidence 4679999999999999999999765 778999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhccCCCCCCceeEEEEecccchhhHHHHHh
Q psy7952 369 SSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 369 ~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
.|...|+||+||+||.|+.|.+++++.+.+...+..+.+
T Consensus 109 ~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 109 RSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 999999999999999999999999999888777666643
No 86
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.81 E-value=8.9e-19 Score=179.97 Aligned_cols=105 Identities=21% Similarity=0.253 Sum_probs=96.3
Q ss_pred CCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCccccccccCCccEEEEeCC-
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGM- 367 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~Vi~~~~- 367 (444)
.+.++||||+|+..++.+++.|... +++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4679999999999999999999876 78999999999999999999999999999999999999999997
Q ss_pred ----CCCHHHHHHHhccCCCCCCceeEEEEecccchhhHHH
Q psy7952 368 ----PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEY 404 (444)
Q Consensus 368 ----p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 404 (444)
|.|...|+||+||+||. ..|.+++++++.+....+.
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~ 563 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIA 563 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHH
Confidence 99999999999999998 7899999998876544433
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.79 E-value=5.2e-19 Score=178.86 Aligned_cols=321 Identities=12% Similarity=0.122 Sum_probs=192.3
Q ss_pred CCcccCchHHHHHHHHHH----ccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcc
Q psy7952 45 GFDSFKCELQKKAIRHIL----LRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYL 120 (444)
Q Consensus 45 g~~~~~t~~Q~~~~~~~~----~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~ 120 (444)
|++. + ++|.+++..+. .| +++++.+|||+|||++ |++|+ +.. .++++|++||++|+
T Consensus 1 ~~~~-r-~~Q~~~~~~v~~~l~~~-~~~~~~a~TGtGKT~~--------~l~p~----l~~---~~~v~i~~pt~~l~-- 60 (551)
T 3crv_A 1 MVKL-R-DWQEKLKDKVIEGLRNN-FLVALNAPTGSGKTLF--------SLLVS----LEV---KPKVLFVVRTHNEF-- 60 (551)
T ss_dssp CCSC-C-HHHHHHHHHHHHHHHTT-CEEEEECCTTSSHHHH--------HHHHH----HHH---CSEEEEEESSGGGH--
T ss_pred CCCC-C-HHHHHHHHHHHHHHHcC-CcEEEECCCCccHHHH--------HHHHH----HhC---CCeEEEEcCCHHHH--
Confidence 4553 4 79999877544 46 8999999999999999 88888 443 34669999999999
Q ss_pred cCccchHhhhcCCCCceeEEEEeCCCChh------------------------------hHHHHHHH-------------
Q psy7952 121 RFRDDKTSIVTGRSDLYQLELIVSGQTKT------------------------------ENKAILEE------------- 157 (444)
Q Consensus 121 ~q~~~~~~~l~~~~~~i~~~~~~~~~~~~------------------------------~~~~~~~~------------- 157 (444)
.|+.+.+..+... ..+++..+.|..... ........
T Consensus 61 ~q~~~~~~~l~~~-~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy 139 (551)
T 3crv_A 61 YPIYRDLTKIREK-RNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPY 139 (551)
T ss_dssp HHHHHHHTTCCCS-SCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHhhh-cCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCcc
Confidence 2333333333111 127777776632110 00111111
Q ss_pred --HHhcCCCeeEEEECCCccccccHHHHHHHHHh-hCCccEEEEeccccccccCCCc-----------------------
Q psy7952 158 --LRLVKPRIKLLYVTPERAVTESFHYLLQHLVR-YNKLAYIVVDEAHCVSEWGHDF----------------------- 211 (444)
Q Consensus 158 --~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~-~~~~~~iViDE~H~~~~~~~~~----------------------- 211 (444)
.+.....++|+|+|+..+... ....... .....++||||||++.+ ...+
T Consensus 140 ~~ar~~~~~adIVV~~~~~l~~~----~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~ 214 (551)
T 3crv_A 140 YSLLNSLYKADVIALTYPYFFID----RYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESR 214 (551)
T ss_dssp HHHHHHGGGCSEEEEETHHHHCH----HHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHH
T ss_pred HHHHhhhhcCCEEEeCchHhcCH----HHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHH
Confidence 122345789999999998642 2222111 23567899999999876 2100
Q ss_pred ------------------------------HHHHH-------------------------HHHHHH--------------
Q psy7952 212 ------------------------------RPTYR-------------------------RLGELR-------------- 222 (444)
Q Consensus 212 ------------------------------~~~~~-------------------------~l~~~~-------------- 222 (444)
...+. .+..++
T Consensus 215 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 294 (551)
T 3crv_A 215 RILSKLLNQLREVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYS 294 (551)
T ss_dssp HHHHHHHHHHTTSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEET
T ss_pred HHHHHHHHHHHHHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccC
Confidence 00000 010000
Q ss_pred --------------HhhCCC-CcEEEEeccCCcchHHHHHHHhcCCCCeEE-----EecCCCCCCceEEEEEccc----c
Q psy7952 223 --------------QFTGNS-IPIIALTATAEPSVKQDIISVLKFNKPYKV-----FKTSTFRSNLFYDVIFDDL----L 278 (444)
Q Consensus 223 --------------~~~~~~-~~~v~lSAT~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~----~ 278 (444)
+.+.+. ..+|++|||+.+ .+.+...+|++.+... ...+....+... +..... .
T Consensus 295 ~~l~~~pl~~~~~l~~~~~~~~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l-~v~~~~~~~~~ 371 (551)
T 3crv_A 295 KRLVIKNPEISYYLNLLNDNELSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRVSGSYEC-YIGVDVTSKYD 371 (551)
T ss_dssp TEEEEECCCTHHHHGGGGCTTCEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEE-EEECSCCCCTT
T ss_pred CEEEEEECCHHHHHHHHhccCceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcCCCceEE-EEeCCCCCccc
Confidence 012233 579999999987 5677788887644321 011111122211 111111 0
Q ss_pred ---hhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh--c--CHHHHHHHHHHHhcCCccEEEEc--Cc
Q psy7952 279 ---KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--V--NKHERSRVQESFMRGEINVITAT--IS 349 (444)
Q Consensus 279 ---~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~--~--~~~~r~~~~~~f~~g~~~vLvaT--~~ 349 (444)
......+.+.+.++... .++.++||++|....+++++.+... . ....+...++.|+.+...||+|+ ..
T Consensus 372 ~r~~~~~~~l~~~i~~l~~~---~~g~~lvlF~Sy~~l~~v~~~~~~~v~~q~~~~~~~~~~~~~~~~~~~vl~~v~gg~ 448 (551)
T 3crv_A 372 MRSDNMWKRYADYLLKIYFQ---AKANVLVVFPSYEIMDRVMSRISLPKYVESEDSSVEDLYSAISANNKVLIGSVGKGK 448 (551)
T ss_dssp TCCHHHHHHHHHHHHHHHHH---CSSEEEEEESCHHHHHHHHTTCCSSEEECCSSCCHHHHHHHTTSSSSCEEEEESSCC
T ss_pred cCCHHHHHHHHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHhcCCcEEEcCCCCCHHHHHHHHHhcCCeEEEEEecce
Confidence 12245566666666544 3679999999999999988743222 1 11135667888864445899998 69
Q ss_pred cccccccC-----CccEEEEeCCCCC------------------------------HHHHHHHhccCCCCCCceeEEEEe
Q psy7952 350 FGMGIDRQ-----NVRFVVHWGMPSS------------------------------IPAYYQESGRAGRDGLQSYCRIYH 394 (444)
Q Consensus 350 ~~~Gidi~-----~~~~Vi~~~~p~s------------------------------~~~~~Qr~GR~~R~g~~g~~~~~~ 394 (444)
+++|||+| .++.||..+.|.. ...+.|.+||+-|..++--+++++
T Consensus 449 ~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 449 LAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp SCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred ecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEe
Confidence 99999999 3788998887651 112359999999985554455566
Q ss_pred ccc
Q psy7952 395 SEH 397 (444)
Q Consensus 395 ~~~ 397 (444)
++.
T Consensus 529 D~R 531 (551)
T 3crv_A 529 DKR 531 (551)
T ss_dssp SGG
T ss_pred ehh
Confidence 544
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.78 E-value=3.3e-20 Score=164.81 Aligned_cols=177 Identities=13% Similarity=0.083 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc---CCcccee
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN---GNVRSRN 108 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~---~~~~~~v 108 (444)
.++.+........++. ++++|.++++.++++ +++++.+|||+|||++ +..++ ...+.. .+...++
T Consensus 18 ~~~~~~~~~~~~~~~~--l~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~--------~~~~~-~~~~~~~~~~~~~~~~ 85 (216)
T 3b6e_A 18 DEENVAARASPEPELQ--LRPYQMEVAQPALEG-KNIIICLPTGSGKTRV--------AVYIA-KDHLDKKKKASEPGKV 85 (216)
T ss_dssp CHHHHHHHTCCSCCCC--CCHHHHHHHHHHHTT-CCEEEECSCHHHHHHH--------HHHHH-HHHHHHHHHTTCCCCE
T ss_pred CchhhhcccCccCCCC--chHHHHHHHHHHhcC-CCEEEEcCCCCCHHHH--------HHHHH-HHHHhhcccccCCCcE
Confidence 3444444433322333 458999999999998 8999999999999999 44333 221211 1223567
Q ss_pred EEEcchhhhhcccC-ccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 109 GWISPILSSFYLRF-RDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 109 lil~P~~~L~~~~q-~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
+|++|+++|+ .| +.+.+..+ ..+ +.+..+.|+........... ..++|+|+||+.+.. .+..
T Consensus 86 lil~p~~~L~--~q~~~~~~~~~~~~~---~~v~~~~g~~~~~~~~~~~~------~~~~i~v~T~~~l~~-----~~~~ 149 (216)
T 3b6e_A 86 IVLVNKVLLV--EQLFRKEFQPFLKKW---YRVIGLSGDTQLKISFPEVV------KSCDIIISTAQILEN-----SLLN 149 (216)
T ss_dssp EEEESSHHHH--HHHHHHTHHHHHTTT---SCEEECCC---CCCCHHHHH------HHCSEEEEEHHHHHH-----HHHC
T ss_pred EEEECHHHHH--HHHHHHHHHHHhccC---ceEEEEeCCcccchhHHhhc------cCCCEEEECHHHHHH-----HHhc
Confidence 9999999999 21 22333444 334 77888887765433222221 257999999999742 2222
Q ss_pred H-------HhhCCccEEEEeccccccccCCCcHHHHHHHHHH-HHhh---------CCCCcEEEEecc
Q psy7952 187 L-------VRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGEL-RQFT---------GNSIPIIALTAT 237 (444)
Q Consensus 187 ~-------~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~-~~~~---------~~~~~~v~lSAT 237 (444)
. ..+.++++||+||||++.+.+. +...+..+... .... .+.+++++||||
T Consensus 150 ~~~~~~~~~~~~~~~~iIiDEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 150 LENGEDAGVQLSDFSLIIIDECHHTNKEAV-YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp -------CCCGGGCSEEEETTC-------C-HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cCcccccccchhcccEEEEECchhhccCCc-HHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 1 3356789999999999875432 33333332211 1111 145889999998
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.73 E-value=1e-18 Score=161.89 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=103.2
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhh
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
++++|.++++.++.+ ++.++++|||+|||.+++ .++ ...+..++ .++||++|+++|+ .+..+.
T Consensus 114 l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~--------~~~-~~~~~~~~--~~~lil~Pt~~L~-----~q~~~~ 176 (282)
T 1rif_A 114 PHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQA--------LLA-RYYLENYE--GKILIIVPTTALT-----TQMADD 176 (282)
T ss_dssp CCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHH--------HHH-HHHHHHCS--SEEEEECSSHHHH-----HHHHHH
T ss_pred ccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHH--------HHH-HHHHHcCC--CeEEEEECCHHHH-----HHHHHH
Confidence 468999999999988 788999999999999943 222 11122111 2569999999999 455555
Q ss_pred h-cCC-CCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccccc
Q psy7952 130 V-TGR-SDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEW 207 (444)
Q Consensus 130 l-~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~ 207 (444)
+ .++ .....+..+.++..... ......+|+|+||+.+... ......++++||+||||++.+
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~I~v~T~~~l~~~-------~~~~~~~~~~vIiDEaH~~~~- 239 (282)
T 1rif_A 177 FVDYRLFSHAMIKKIGGGASKDD---------KYKNDAPVVVGTWQTVVKQ-------PKEWFSQFGMMMNDECHLATG- 239 (282)
T ss_dssp HHHHTSCCGGGEEECSTTCSSTT---------CCCTTCSEEEECHHHHTTS-------CGGGGGGEEEEEEETGGGCCH-
T ss_pred HHHhcccccceEEEEeCCCcchh---------hhccCCcEEEEchHHHHhh-------HHHHHhhCCEEEEECCccCCc-
Confidence 5 222 22256666666654321 1135789999999987532 112356789999999999753
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcch
Q psy7952 208 GHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSV 242 (444)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~ 242 (444)
..+..++..+....+++++||||++..
T Consensus 240 --------~~~~~il~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 240 --------KSISSIISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp --------HHHHHHTTTCTTCCEEEEECSSCCTTS
T ss_pred --------ccHHHHHHHhhcCCeEEEEeCCCCCcc
Confidence 233445555555689999999998754
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.69 E-value=1.8e-17 Score=149.02 Aligned_cols=137 Identities=16% Similarity=0.095 Sum_probs=96.0
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhh
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
++++|.+++..++++ +++++++|||+|||.+|+. ++ ...+ .+++|++|+++|+ .+..+.
T Consensus 94 l~~~Q~~ai~~~~~~-~~~ll~~~tG~GKT~~a~~--------~~----~~~~---~~~liv~P~~~L~-----~q~~~~ 152 (237)
T 2fz4_A 94 LRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMA--------AI----NELS---TPTLIVVPTLALA-----EQWKER 152 (237)
T ss_dssp CCHHHHHHHHHHTTT-SEEEEEESSSTTHHHHHHH--------HH----HHSC---SCEEEEESSHHHH-----HHHHHH
T ss_pred cCHHHHHHHHHHHhC-CCEEEEeCCCCCHHHHHHH--------HH----HHcC---CCEEEEeCCHHHH-----HHHHHH
Confidence 468999999999998 7899999999999998432 22 1112 3559999999999 555666
Q ss_pred h-cCCCCcee-EEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEecccccccc
Q psy7952 130 V-TGRSDLYQ-LELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEW 207 (444)
Q Consensus 130 l-~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~~ 207 (444)
+ .++ +. +..+.++.. ...+|+|+|++.+... .. ....++++||+||+|++.+.
T Consensus 153 ~~~~~---~~~v~~~~g~~~---------------~~~~i~v~T~~~l~~~-----~~--~~~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 153 LGIFG---EEYVGEFSGRIK---------------ELKPLTVSTYDSAYVN-----AE--KLGNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp HGGGC---GGGEEEESSSCB---------------CCCSEEEEEHHHHHHT-----HH--HHTTTCSEEEEECSSCCCTT
T ss_pred HHhCC---CCeEEEEeCCCC---------------CcCCEEEEeHHHHHhh-----HH--HhcccCCEEEEECCccCCCh
Confidence 6 445 66 777777653 2568999999886421 11 11246999999999998654
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcch
Q psy7952 208 GHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSV 242 (444)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~ 242 (444)
. ++ .+ ...++ ..+++++||||.+..
T Consensus 208 ~--~~----~i---~~~~~-~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 208 S--YV----QI---AQMSI-APFRLGLTATFERED 232 (237)
T ss_dssp T--HH----HH---HHTCC-CSEEEEEEESCC---
T ss_pred H--HH----HH---HHhcc-CCEEEEEecCCCCCC
Confidence 3 32 22 22333 378999999998753
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=146.65 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC--ccceeEEEcchhhhhcccCccchHh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN--VRSRNGWISPILSSFYLRFRDDKTS 128 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~--~~~~vlil~P~~~L~~~~q~~~~~~ 128 (444)
+++|.++++.+..| +++++.||||+|||.. +..+. +......+ ...++++++|+++++ .+..+
T Consensus 63 ~~~q~~~i~~i~~g-~~~~i~g~TGsGKTt~--------~~~~~-~~~~~~~~~~~~~~~l~~~p~~~la-----~q~~~ 127 (235)
T 3llm_A 63 KKFESEILEAISQN-SVVIIRGATGCGKTTQ--------VPQFI-LDDFIQNDRAAECNIVVTQPRRISA-----VSVAE 127 (235)
T ss_dssp GGGHHHHHHHHHHC-SEEEEECCTTSSHHHH--------HHHHH-HHHHHHTTCGGGCEEEEEESSHHHH-----HHHHH
T ss_pred HHHHHHHHHHHhcC-CEEEEEeCCCCCcHHh--------HHHHH-hcchhhcCCCCceEEEEeccchHHH-----HHHHH
Confidence 47999999999999 9999999999999976 34433 22222222 234789999999999 44444
Q ss_pred hh--cCCCC-ceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccc-
Q psy7952 129 IV--TGRSD-LYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV- 204 (444)
Q Consensus 129 ~l--~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~- 204 (444)
.+ ..+.. ...+..-....... ...+++|+|+||+++.. . +.. .+.++++||+||+|.+
T Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~Ivv~Tpg~l~~----~-l~~--~l~~~~~lVlDEah~~~ 189 (235)
T 3llm_A 128 RVAFERGEEPGKSCGYSVRFESIL-----------PRPHASIMFCTVGVLLR----K-LEA--GIRGISHVIVDEIHERD 189 (235)
T ss_dssp HHHHTTTCCTTSSEEEEETTEEEC-----------CCSSSEEEEEEHHHHHH----H-HHH--CCTTCCEEEECCTTSCC
T ss_pred HHHHHhccccCceEEEeechhhcc-----------CCCCCeEEEECHHHHHH----H-HHh--hhcCCcEEEEECCccCC
Confidence 44 11100 02222111111000 02468899999999752 2 222 4789999999999985
Q ss_pred cccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhc
Q psy7952 205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK 251 (444)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~ 251 (444)
.+.+ +. ...+..+....+ +.+++++|||++... +.++++
T Consensus 190 ~~~~--~~--~~~l~~i~~~~~-~~~~il~SAT~~~~~---~~~~~~ 228 (235)
T 3llm_A 190 INTD--FL--LVVLRDVVQAYP-EVRIVLMSATIDTSM---FCEYFF 228 (235)
T ss_dssp HHHH--HH--HHHHHHHHHHCT-TSEEEEEECSSCCHH---HHHHTT
T ss_pred cchH--HH--HHHHHHHHhhCC-CCeEEEEecCCCHHH---HHHHcC
Confidence 3222 21 233444444444 489999999998765 555553
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.67 E-value=6.3e-16 Score=157.52 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=99.1
Q ss_pred cEEEEeccCCcchHHHHHHHhcCCCCeEEEecCCC-CCCceEEEEEc------ccchhhHHHHHHHHHHHhccCCCCCce
Q psy7952 230 PIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF-RSNLFYDVIFD------DLLKDSYAHVKEFIEKCLGKDNKANNC 302 (444)
Q Consensus 230 ~~v~lSAT~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~ 302 (444)
.+|++|||+.+ .+.+.+.+|+. .......+.. ..+....+... .........+.+.+.+++.. .++.
T Consensus 377 ~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~---~~g~ 450 (620)
T 4a15_A 377 KTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK---VKKN 450 (620)
T ss_dssp EEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH---HCSC
T ss_pred eEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh---CCCC
Confidence 35899999987 56778888886 4333333222 22222211110 01112234455555565544 3677
Q ss_pred EEEEecccchHHHHHHHHHhh-------cCHHHHHHHHHHHhcCCccEEEEc--CccccccccCC--ccEEEEeCCCCC-
Q psy7952 303 GIIYCRTREHTTDLADALRRK-------VNKHERSRVQESFMRGEINVITAT--ISFGMGIDRQN--VRFVVHWGMPSS- 370 (444)
Q Consensus 303 ~iVf~~s~~~~~~l~~~L~~~-------~~~~~r~~~~~~f~~g~~~vLvaT--~~~~~Gidi~~--~~~Vi~~~~p~s- 370 (444)
++||++|....+++++.+... ++...+..++++|+ ++..||+++ ..+++|||+|+ ++.||..+.|..
T Consensus 451 ~lvlF~Sy~~l~~v~~~l~~~~~~~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~ 529 (620)
T 4a15_A 451 TIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPR 529 (620)
T ss_dssp EEEEESCHHHHHHHTSSCCSCCEECCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCC
T ss_pred EEEEeCCHHHHHHHHHHHHhcchhccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCC
Confidence 999999999999998877511 23567899999999 888999997 48999999985 778999998752
Q ss_pred ----------------------------HHHHHHHhccCCCCCCceeEEEEeccc
Q psy7952 371 ----------------------------IPAYYQESGRAGRDGLQSYCRIYHSEH 397 (444)
Q Consensus 371 ----------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 397 (444)
...+.|.+||+-|...+--+++++++.
T Consensus 530 ~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 530 PDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred CCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 122369999999985544455566543
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.56 E-value=5.2e-15 Score=135.20 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh-----------cCHHHHHHHHHHHhcC-Ccc-EEE
Q psy7952 279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-----------VNKHERSRVQESFMRG-EIN-VIT 345 (444)
Q Consensus 279 ~~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~-----------~~~~~r~~~~~~f~~g-~~~-vLv 345 (444)
..+...+.+++..... .+.++||||++...++.+...|... ++..+|..+++.|++| ..+ +|+
T Consensus 95 s~K~~~L~~ll~~~~~----~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~ 170 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALD----EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL 170 (271)
T ss_dssp CHHHHHHHHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CHHHHHHHHHHHHHHh----CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEE
Confidence 3455556666655433 4789999999999999999999763 7889999999999988 677 699
Q ss_pred EcCccccccccCCccEEEEeCCCCCHHHHHHHhccCCCCCCceeE--EEEeccc
Q psy7952 346 ATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYC--RIYHSEH 397 (444)
Q Consensus 346 aT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 397 (444)
+|+++++|+|++.+++||++|+|+++..|.||+||++|.|+.+.+ +.++..+
T Consensus 171 st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 171 SVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp ECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred ehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999999999987765 3445544
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.51 E-value=6.2e-08 Score=98.58 Aligned_cols=77 Identities=21% Similarity=0.185 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCcccccc--CCccce
Q psy7952 30 KVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN--GNVRSR 107 (444)
Q Consensus 30 ~~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~--~~~~~~ 107 (444)
.+++.++...+...|+... .+++|..++..++.+ +.+++.+|+|||||.++. +.++. +.. .+...+
T Consensus 131 ~~~~~~~~~~l~~~~~~~~-~~~~Q~~Ai~~~l~~-~~~vi~G~pGTGKTt~l~------~ll~~----l~~~~~~~~~~ 198 (608)
T 1w36_D 131 EVDEALLAQTLDKLFPVSD-EINWQKVAAAVALTR-RISVISGGPGTGKTTTVA------KLLAA----LIQMADGERCR 198 (608)
T ss_dssp CCCHHHHHHHHHTTCCCTT-SCCHHHHHHHHHHTB-SEEEEECCTTSTHHHHHH------HHHHH----HHHTCSSCCCC
T ss_pred CCCHHHHHHHHHHHhccCC-CCHHHHHHHHHHhcC-CCEEEEeCCCCCHHHHHH------HHHHH----HHHhhhcCCCe
Confidence 3557778888887765332 257999999999988 899999999999995511 22222 221 123347
Q ss_pred eEEEcchhhhh
Q psy7952 108 NGWISPILSSF 118 (444)
Q Consensus 108 vlil~P~~~L~ 118 (444)
+++++||..++
T Consensus 199 vll~APTg~AA 209 (608)
T 1w36_D 199 IRLAAPTGKAA 209 (608)
T ss_dssp EEEEBSSHHHH
T ss_pred EEEEeCChhHH
Confidence 79999999999
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.03 E-value=1.8e-06 Score=88.85 Aligned_cols=66 Identities=14% Similarity=0.021 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
++-|.+|+..++..+.-.+|+||+|||||.+.+ .+ +..+... ..+||+++||...+ .+.++++
T Consensus 191 N~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~---------~~-I~~l~~~--~~~ILv~a~TN~Av-----D~i~erL 253 (646)
T 4b3f_X 191 DTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV---------EI-ILQAVKQ--GLKVLCCAPSNIAV-----DNLVERL 253 (646)
T ss_dssp CHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH---------HH-HHHHHHT--TCCEEEEESSHHHH-----HHHHHHH
T ss_pred CHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH---------HH-HHHHHhC--CCeEEEEcCchHHH-----HHHHHHH
Confidence 478999999998762457999999999998721 11 1112222 24679999999999 7888877
Q ss_pred -cCC
Q psy7952 131 -TGR 133 (444)
Q Consensus 131 -~~~ 133 (444)
..+
T Consensus 254 ~~~~ 257 (646)
T 4b3f_X 254 ALCK 257 (646)
T ss_dssp HHTT
T ss_pred HhcC
Confidence 444
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.86 E-value=1.4e-05 Score=81.76 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
++.|.+|+..++.+ ...+|.||+|||||.++. .. +..+... ...++++++||...+ .+..+++
T Consensus 182 n~~Q~~av~~~l~~-~~~li~GppGTGKT~~~~---------~~-i~~l~~~-~~~~ilv~a~tn~A~-----~~l~~~l 244 (624)
T 2gk6_A 182 NHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSA---------TI-VYHLARQ-GNGPVLVCAPSNIAV-----DQLTEKI 244 (624)
T ss_dssp CHHHHHHHHHHHTC-SEEEEECCTTSCHHHHHH---------HH-HHHHHTS-SSCCEEEEESSHHHH-----HHHHHHH
T ss_pred CHHHHHHHHHHhcC-CCeEEECCCCCCHHHHHH---------HH-HHHHHHc-CCCeEEEEeCcHHHH-----HHHHHHH
Confidence 57899999999876 778999999999997721 11 1112221 234679999999998 6666766
Q ss_pred -cCC
Q psy7952 131 -TGR 133 (444)
Q Consensus 131 -~~~ 133 (444)
..+
T Consensus 245 ~~~~ 248 (624)
T 2gk6_A 245 HQTG 248 (624)
T ss_dssp HTTT
T ss_pred HhcC
Confidence 444
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=2.5e-05 Score=81.70 Aligned_cols=66 Identities=18% Similarity=0.108 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
++.|.+|+..++.+ ...+|.||+|||||.++.- . +..+... ...++++++||...+ .+..+++
T Consensus 362 n~~Q~~Av~~~l~~-~~~lI~GppGTGKT~~i~~---------~-i~~l~~~-~~~~ILv~a~tn~A~-----d~l~~rL 424 (802)
T 2xzl_A 362 NSSQSNAVSHVLQR-PLSLIQGPPGTGKTVTSAT---------I-VYHLSKI-HKDRILVCAPSNVAV-----DHLAAKL 424 (802)
T ss_dssp CHHHHHHHHHHTTC-SEEEEECSTTSSHHHHHHH---------H-HHHHHHH-HCCCEEEEESSHHHH-----HHHHHHH
T ss_pred CHHHHHHHHHHhcC-CCEEEECCCCCCHHHHHHH---------H-HHHHHhC-CCCeEEEEcCcHHHH-----HHHHHHH
Confidence 57999999999876 6789999999999977211 1 1112211 234679999999999 7777776
Q ss_pred -cCC
Q psy7952 131 -TGR 133 (444)
Q Consensus 131 -~~~ 133 (444)
..+
T Consensus 425 ~~~g 428 (802)
T 2xzl_A 425 RDLG 428 (802)
T ss_dssp HHTT
T ss_pred HhhC
Confidence 444
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.68 E-value=2.3e-05 Score=81.87 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
++.|.+|+..++.+ ...+|.||+|||||.++. .. +..+... ...++++++||...+ .+..+++
T Consensus 358 n~~Q~~Av~~~l~~-~~~lI~GppGTGKT~ti~---------~~-i~~l~~~-~~~~ilv~a~tn~A~-----~~l~~~l 420 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSA---------TI-VYHLARQ-GNGPVLVCAPSNIAV-----DQLTEKI 420 (800)
T ss_dssp CHHHHHHHHHHHTS-SEEEEECCTTSCHHHHHH---------HH-HHHHHTT-CSSCEEEEESSHHHH-----HHHHHHH
T ss_pred CHHHHHHHHHhccC-CeEEEEcCCCCCHHHHHH---------HH-HHHHHHc-CCCcEEEEcCcHHHH-----HHHHHHH
Confidence 57899999999887 778999999999997721 11 1122221 234679999999998 6666766
Q ss_pred -cCC
Q psy7952 131 -TGR 133 (444)
Q Consensus 131 -~~~ 133 (444)
..+
T Consensus 421 ~~~g 424 (800)
T 2wjy_A 421 HQTG 424 (800)
T ss_dssp HTTT
T ss_pred HHhC
Confidence 444
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.60 E-value=8.1e-05 Score=73.13 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=43.3
Q ss_pred CCcccCchHHHHHHHHHHcc----CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 45 GFDSFKCELQKKAIRHILLR----THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 45 g~~~~~t~~Q~~~~~~~~~~----~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
.+.. .++-|++++..++.. +..++|.|++|||||.++ ..++..+...+. .++++++||...+
T Consensus 22 ~~~~-Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll----------~~~~~~l~~~~~-~~il~~a~T~~Aa 87 (459)
T 3upu_A 22 TFDD-LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT----------KFIIEALISTGE-TGIILAAPTHAAK 87 (459)
T ss_dssp CSSC-CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH----------HHHHHHHHHTTC-CCEEEEESSHHHH
T ss_pred cccc-CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH----------HHHHHHHHhcCC-ceEEEecCcHHHH
Confidence 5566 458999999977542 358999999999999772 111222333333 3568999999887
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.55 E-value=4.8e-05 Score=76.59 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
++.|.+++..++.+ +.+++.+|+|||||.++. .++..+...+ .++++++||...+
T Consensus 191 ~~~Q~~Av~~~~~~-~~~~I~G~pGTGKTt~i~----------~l~~~l~~~g--~~Vl~~ApT~~Aa 245 (574)
T 3e1s_A 191 SEEQASVLDQLAGH-RLVVLTGGPGTGKSTTTK----------AVADLAESLG--LEVGLCAPTGKAA 245 (574)
T ss_dssp CHHHHHHHHHHTTC-SEEEEECCTTSCHHHHHH----------HHHHHHHHTT--CCEEEEESSHHHH
T ss_pred CHHHHHHHHHHHhC-CEEEEEcCCCCCHHHHHH----------HHHHHHHhcC--CeEEEecCcHHHH
Confidence 58999999999987 889999999999997611 1111122222 4568999999888
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.18 E-value=0.0054 Score=62.91 Aligned_cols=77 Identities=9% Similarity=-0.060 Sum_probs=49.1
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC-ccceeEEEcchhhhhcccCccchHhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN-VRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~-~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
++-|.+++.. .+ .+++|.|++|||||.++ +..+...+...+ ...+++++++|+..+ .+..++
T Consensus 11 n~~Q~~av~~--~~-~~~lV~a~aGsGKT~~l---------~~ri~~l~~~~~~~~~~iL~ltft~~aa-----~e~~~r 73 (647)
T 3lfu_A 11 NDKQREAVAA--PR-SNLLVLAGAGSGKTRVL---------VHRIAWLMSVENCSPYSIMAVTFTNKAA-----AEMRHR 73 (647)
T ss_dssp CHHHHHHHTC--CS-SCEEEEECTTSCHHHHH---------HHHHHHHHHTSCCCGGGEEEEESSHHHH-----HHHHHH
T ss_pred CHHHHHHHhC--CC-CCEEEEECCCCCHHHHH---------HHHHHHHHHhCCCChhhEEEEeccHHHH-----HHHHHH
Confidence 4789999983 23 68999999999999881 111122222223 234789999999998 666666
Q ss_pred h-c---CCCCceeEEEEeC
Q psy7952 130 V-T---GRSDLYQLELIVS 144 (444)
Q Consensus 130 l-~---~~~~~i~~~~~~~ 144 (444)
+ . .....+.+..+++
T Consensus 74 l~~~~~~~~~~~~v~Tfhs 92 (647)
T 3lfu_A 74 IGQLMGTSQGGMWVGTFHG 92 (647)
T ss_dssp HHHHHCSCCTTCEEEEHHH
T ss_pred HHHHhccccCCcEEEcHHH
Confidence 5 1 1112355666554
No 102
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.018 Score=53.04 Aligned_cols=16 Identities=0% Similarity=0.061 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.||||+|||.+
T Consensus 46 ~~lli~GpPGTGKT~~ 61 (318)
T 3te6_A 46 KLFYITNADDSTKFQL 61 (318)
T ss_dssp CEEEEECCCSHHHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999977
No 103
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.50 E-value=0.022 Score=52.31 Aligned_cols=16 Identities=6% Similarity=-0.103 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.+|+|+|||..
T Consensus 68 ~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4699999999999977
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.49 E-value=0.0036 Score=60.13 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=29.6
Q ss_pred cEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh
Q psy7952 67 DIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
-.++.|++|+|||.. + .+ +.... +.++++||++++ .+..+.+
T Consensus 163 v~~I~G~aGsGKTt~--------I-----~~-~~~~~---~~lVlTpT~~aa-----~~l~~kl 204 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKE--------I-----LS-RVNFE---EDLILVPGRQAA-----EMIRRRA 204 (446)
T ss_dssp EEEEEECTTSCHHHH--------H-----HH-HCCTT---TCEEEESCHHHH-----HHHHHHH
T ss_pred EEEEEcCCCCCHHHH--------H-----HH-HhccC---CeEEEeCCHHHH-----HHHHHHh
Confidence 468999999999977 1 11 12223 449999999999 5555555
No 105
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.26 E-value=0.033 Score=44.73 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.4
Q ss_pred ccCCcEEEEccCCCccccc
Q psy7952 63 LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~ 81 (444)
....++++.+|+|+|||..
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 3448899999999999977
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.04 E-value=0.0068 Score=50.89 Aligned_cols=29 Identities=14% Similarity=-0.042 Sum_probs=21.8
Q ss_pred hHHHHHHHHHH---------ccCCcEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHIL---------LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~---------~~~~~~ii~apTGsGKT~~ 81 (444)
+.|.+++..+. .+ +.+++.+|+|+|||..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g-~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEG-KGLTFVGSPGVGKTHL 54 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGC-CEEEECCSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCC-CEEEEECCCCCCHHHH
Confidence 45666665554 24 7899999999999977
No 107
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.01 E-value=0.048 Score=49.90 Aligned_cols=117 Identities=8% Similarity=-0.085 Sum_probs=74.3
Q ss_pred HHHHHHhccCCCCCceEEEEecccchHHHHHHHHHhh---------cCHHHHHHHHHHHhcCCccEEEEcCccccccc--
Q psy7952 287 EFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK---------VNKHERSRVQESFMRGEINVITATISFGMGID-- 355 (444)
Q Consensus 287 ~~l~~~l~~~~~~~~~~iVf~~s~~~~~~l~~~L~~~---------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid-- 355 (444)
.++.+++......+++++||++.....+-+.+.+... .....+ .+-..+...+-+.|...+-|+|
T Consensus 112 ~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~----~k~~~~~~~i~Lltsag~~gin~~ 187 (328)
T 3hgt_A 112 SVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA----AAANDFSCTVHLFSSEGINFTKYP 187 (328)
T ss_dssp HHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-----------CCSEEEEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh----hhcccCCceEEEEECCCCCCcCcc
Confidence 3444444444446899999999999998888888766 111111 1112445556444666666776
Q ss_pred ---cCCccEEEEeCCCCCHHHH-HHHhccCCCCC----CceeEEEEecccchhhHHHHHh
Q psy7952 356 ---RQNVRFVVHWGMPSSIPAY-YQESGRAGRDG----LQSYCRIYHSEHSKKSLEYVIK 407 (444)
Q Consensus 356 ---i~~~~~Vi~~~~p~s~~~~-~Qr~GR~~R~g----~~g~~~~~~~~~~~~~~~~~~~ 407 (444)
....++||.||..+++..- +|.+-|+.|.| +.-.++-++.....++..--..
T Consensus 188 ~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~ 247 (328)
T 3hgt_A 188 IKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFG 247 (328)
T ss_dssp CCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHH
T ss_pred cccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHcc
Confidence 6789999999999998885 89888888763 3445666777776666554443
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.75 E-value=0.013 Score=54.43 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.||+|+|||..
T Consensus 38 ~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHL 53 (324)
T ss_dssp SSEEEECSSSSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5899999999999977
No 109
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.043 Score=51.99 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 183 rGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLL 198 (405)
T ss_dssp CCEEEESCSSSSHHHH
T ss_pred CceEEeCCCCCCHHHH
Confidence 7899999999999977
No 110
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.52 E-value=0.13 Score=48.53 Aligned_cols=58 Identities=7% Similarity=-0.049 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
+++||...+..+... +-+++..+-+.|||.++...++. ..+. ....+++++.|+..-+
T Consensus 164 L~p~Qk~il~~l~~~-R~~vi~~sRq~GKT~l~a~~~l~--------~a~~--~~g~~v~~vA~t~~qA 221 (385)
T 2o0j_A 164 LRDYQRDMLKIMSSK-RMTVCNLSRQLGKTTVVAIFLAH--------FVCF--NKDKAVGILAHKGSMS 221 (385)
T ss_dssp CCHHHHHHHHHHHHS-SEEEEEECSSSCHHHHHHHHHHH--------HHHS--SSSCEEEEEESSHHHH
T ss_pred CCHHHHHHHHhhccC-cEEEEEEcCcCChhHHHHHHHHH--------HHHh--CCCCeEEEEeCCHHHH
Confidence 368999999877544 66899999999999873322111 0011 2233569999999887
No 111
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.51 E-value=0.019 Score=51.44 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=17.8
Q ss_pred HHHHccCCcEEEEccCCCccccc
Q psy7952 59 RHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 59 ~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
..+.....++++.+|+|+|||..
T Consensus 23 ~~~~~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 23 SHLAPLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp HHHTTSCSCEEEECCTTSCHHHH
T ss_pred HHHhCCCCCEEEECCCCCcHHHH
Confidence 33334447899999999999977
No 112
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.09 E-value=0.059 Score=52.24 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+++++.||+|+|||..
T Consensus 131 ~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHL 146 (440)
T ss_dssp CCEEEECSSSSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999977
No 113
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.054 Score=52.09 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++++|+|+|||..
T Consensus 216 rGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 7899999999999977
No 114
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.83 E-value=0.038 Score=48.35 Aligned_cols=16 Identities=13% Similarity=0.031 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 53 ~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999977
No 115
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.79 E-value=0.061 Score=49.75 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 52 ~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 52 SGILLYGPPGTGKSYL 67 (322)
T ss_dssp CEEEEECSSSSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5799999999999977
No 116
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.76 E-value=0.014 Score=54.20 Aligned_cols=165 Identities=12% Similarity=0.014 Sum_probs=78.8
Q ss_pred CcccCchHHHHHHHHHHcc---CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcch---hhhhc
Q psy7952 46 FDSFKCELQKKAIRHILLR---THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPI---LSSFY 119 (444)
Q Consensus 46 ~~~~~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~---~~L~~ 119 (444)
...+||.+. .+..+..| ..-+++.|++|+|||..|+..+. .....+. +|+|++.- ..++
T Consensus 26 ~~gi~TG~~--~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~---------~~a~~g~---~Vl~fSlEms~~ql~- 90 (338)
T 4a1f_A 26 VTGIPTGFV--QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVL---------SALNDDR---GVAVFSLEMSAEQLA- 90 (338)
T ss_dssp CCSBCCSCH--HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHH---------HHHHTTC---EEEEEESSSCHHHHH-
T ss_pred cCcccCCCh--HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHH---------HHHHcCC---eEEEEeCCCCHHHHH-
Confidence 344555443 55555543 15589999999999976332111 1112222 34777642 2333
Q ss_pred ccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEE-CCCccccccHHHHHHHHHhhC-CccEE
Q psy7952 120 LRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYV-TPERAVTESFHYLLQHLVRYN-KLAYI 196 (444)
Q Consensus 120 ~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~-Tpe~l~~~~~~~~~~~~~~~~-~~~~i 196 (444)
...+... ......+ ..+..+..++..+......+. ...+.|- +|.. .-.............. .+++|
T Consensus 91 ----~Rlls~~~~v~~~~l----~~g~Ls~~e~~~l~~a~~~l~-~~~l~I~d~~~~-si~~i~~~ir~l~~~~gg~~lI 160 (338)
T 4a1f_A 91 ----LRALSDLTSINMHDL----ESGRLDDDQWENLAKCFDHLS-QKKLFFYDKSYV-RIEQIRLQLRKLKSQHKELGIA 160 (338)
T ss_dssp ----HHHHHHHHCCCHHHH----HHTCCCHHHHHHHHHHHHHHH-HSCEEEECCTTC-CHHHHHHHHHHHHHHCTTEEEE
T ss_pred ----HHHHHHhhCCCHHHH----hcCCCCHHHHHHHHHHHHHHh-cCCeEEeCCCCC-cHHHHHHHHHHHHHhcCCCCEE
Confidence 2222211 1110001 123344444433332222222 2345553 3431 1111222333333344 79999
Q ss_pred EEeccccccccC------CCcHHHHHHHHHHHHhhCCCCcEEEEecc
Q psy7952 197 VVDEAHCVSEWG------HDFRPTYRRLGELRQFTGNSIPIIALTAT 237 (444)
Q Consensus 197 ViDE~H~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~v~lSAT 237 (444)
|||-.+.+...+ .........|+.+.+.+. ++++++|-.
T Consensus 161 VIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~--vpVi~lsQl 205 (338)
T 4a1f_A 161 FIDYLQLMSGSKATKERHEQIAEISRELKTLARELE--IPIIALVQL 205 (338)
T ss_dssp EEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHT--SCEEEEEEC
T ss_pred EEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcC--CeEEEEEec
Confidence 999999885311 234455555666555554 778887754
No 117
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.68 E-value=0.033 Score=54.14 Aligned_cols=129 Identities=9% Similarity=-0.004 Sum_probs=60.0
Q ss_pred HHHHHHcc---CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcch---hhhhcccCccchHhhh
Q psy7952 57 AIRHILLR---THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPI---LSSFYLRFRDDKTSIV 130 (444)
Q Consensus 57 ~~~~~~~~---~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~---~~L~~~~q~~~~~~~l 130 (444)
.+..++.| ..-+++.|++|+|||..|+..+. ......+ .+|+++... ..+. .......
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~---------~~a~~~g--~~vl~~slE~~~~~l~-----~R~~~~~ 252 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQ---------NAALKEG--VGVGIYSLEMPAAQLT-----LRMMCSE 252 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHH---------HHHHTTC--CCEEEEESSSCHHHHH-----HHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHH---------HHHHhCC--CeEEEEECCCCHHHHH-----HHHHHHH
Confidence 45555532 15589999999999976332111 1111112 234776542 2333 2222111
Q ss_pred -cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccc
Q psy7952 131 -TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSE 206 (444)
Q Consensus 131 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~ 206 (444)
......+. .+.....++......+..+. ...+.+-.+..+....+............+++||||..+.+..
T Consensus 253 ~~i~~~~l~----~g~l~~~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 253 ARIDMNRVR----LGQLTDRDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp TTCCTTTCC----GGGCCHHHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred cCCCHHHHh----CCCCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 11111111 23344444433333332222 2345554433222111222333344445799999999999864
No 118
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.64 E-value=0.029 Score=52.22 Aligned_cols=31 Identities=6% Similarity=0.079 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHc----cC--CcEEEEccCCCcccccc
Q psy7952 52 ELQKKAIRHILL----RT--HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 52 ~~Q~~~~~~~~~----~~--~~~ii~apTGsGKT~~a 82 (444)
|||.+++..+.. |+ +.+++.||+|+|||..|
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 588887766553 32 34899999999999773
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.61 E-value=0.048 Score=49.34 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 52 ~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLL 67 (285)
T ss_dssp SEEEEESSSSSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 7899999999999977
No 120
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.54 E-value=0.018 Score=50.10 Aligned_cols=16 Identities=19% Similarity=-0.002 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+++.+|+|+|||..
T Consensus 13 ~i~litG~mGsGKTT~ 28 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAE 28 (223)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred EEEEEECCCCCcHHHH
Confidence 4578899999999987
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.50 E-value=0.27 Score=41.90 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=24.3
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEecc
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTAT 237 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT 237 (444)
.-.+||+||+|.+... ....+..++...+.+..+|+.|..
T Consensus 102 ~~~vliiDe~~~l~~~------~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 102 PFKIIFLDEADALTAD------AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp SCEEEEEETGGGSCHH------HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEeChhhcCHH------HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 4679999999997432 234455555555554556655543
No 122
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.11 Score=49.48 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 217 rGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLL 232 (437)
T ss_dssp SEEEEESSTTTTHHHH
T ss_pred CCCceECCCCchHHHH
Confidence 6799999999999977
No 123
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.048 Score=52.41 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.++++||+|+|||..
T Consensus 216 rGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLL 231 (434)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred CeeEEECcCCCCHHHH
Confidence 6899999999999977
No 124
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.23 E-value=0.068 Score=43.20 Aligned_cols=18 Identities=22% Similarity=-0.068 Sum_probs=15.8
Q ss_pred ccCCcEEEEccCCCccccc
Q psy7952 63 LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~ 81 (444)
.+ +.+.+.+|+|+|||..
T Consensus 35 ~g-~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HG-QFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CC-SEEEEESSSTTTTCHH
T ss_pred CC-CEEEEECCCCCCHHHH
Confidence 45 7899999999999966
No 125
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.16 E-value=0.028 Score=54.81 Aligned_cols=33 Identities=6% Similarity=0.009 Sum_probs=22.5
Q ss_pred ccCchHHHHHHHHHHcc---CCcEEEEccCCCcccccc
Q psy7952 48 SFKCELQKKAIRHILLR---THDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a 82 (444)
.++|.+. .++.+..| ..-+++.|++|+|||..+
T Consensus 185 ~i~tG~~--~LD~~~gGl~~G~liiI~G~pG~GKTtl~ 220 (454)
T 2r6a_A 185 GIPTGFT--ELDRMTSGFQRSDLIIVAARPSVGKTAFA 220 (454)
T ss_dssp SBCCSCH--HHHHHHSSBCTTCEEEEECCTTSCHHHHH
T ss_pred CCCCCcH--HHHhhcCCCCCCCEEEEECCCCCCHHHHH
Confidence 4455443 56666632 156899999999999773
No 126
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.11 Score=49.88 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.++++||+|+|||..
T Consensus 207 rGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTML 222 (428)
T ss_dssp CEEEEESCTTTTHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 6799999999999977
No 127
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.05 E-value=0.2 Score=50.52 Aligned_cols=58 Identities=9% Similarity=0.006 Sum_probs=39.8
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
++++|...+..+... +.+++..+-|+|||.++...++ ..+.. ....+++++.|+...+
T Consensus 164 l~p~Q~~i~~~l~~~-r~~~i~~~Rq~GKS~~~a~~~l---------~~~~~-~~~~~i~~va~t~~qA 221 (592)
T 3cpe_A 164 LRDYQRDMLKIMSSK-RMTVCNLSRQLGKTTVVAIFLA---------HFVCF-NKDKAVGILAHKGSMS 221 (592)
T ss_dssp CCHHHHHHHHHHHHC-SEEEEEECSSSCHHHHHHHHHH---------HHHHT-SSSCEEEEEESSHHHH
T ss_pred CCHHHHHHHHhhccc-cEEEEEEcCccChHHHHHHHHH---------HHHHh-CCCCeEEEEECCHHHH
Confidence 368999999887444 6789999999999987322111 01111 1233679999999988
No 128
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.12 Score=49.67 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccccc
Q psy7952 65 THDIFVSMPTGAVSLVG 81 (444)
Q Consensus 65 ~~~~ii~apTGsGKT~~ 81 (444)
.+.+++++|+|+|||+.
T Consensus 243 prGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSEEEECSCTTSSHHHH
T ss_pred CCceEeeCCCCCcHHHH
Confidence 37899999999999977
No 129
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.82 E-value=0.064 Score=52.68 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=28.3
Q ss_pred CccEEEEeccccccccC-----CCcHHHHHHHHHHHHhhCCCCcEEEEeccCCc
Q psy7952 192 KLAYIVVDEAHCVSEWG-----HDFRPTYRRLGELRQFTGNSIPIIALTATAEP 240 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~ 240 (444)
...+|++||+|.+.... ..-......+...++.......++.+.||-.+
T Consensus 297 ~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 45799999999885421 10122334455555555554567777777443
No 130
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.58 E-value=0.11 Score=49.30 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+++++.+|+|+|||.+
T Consensus 149 ~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTML 164 (389)
T ss_dssp SEEEEESSTTSCHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 6899999999999977
No 131
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.49 E-value=0.094 Score=46.59 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++++|+|+|||..
T Consensus 40 ~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLL 55 (262)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 6799999999999977
No 132
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.38 E-value=0.14 Score=49.25 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=29.4
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHH
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQ 244 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~ 244 (444)
...+++|+|++.+.... . -...+..+..+.....+..-++.++|+......+
T Consensus 178 ~~~DvvIIDTaGr~~~~-~-d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~ 229 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYG-E-ETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD 229 (433)
T ss_dssp TTCSEEEEEECCCSSSC-C-TTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH
T ss_pred cCCCEEEEECCCCcccc-C-CHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH
Confidence 36889999999764300 0 1223344444444444445567788876554433
No 133
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.37 E-value=0.72 Score=37.99 Aligned_cols=120 Identities=8% Similarity=0.099 Sum_probs=73.1
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+.+..++......++ .+..+|+|+| +.+.
T Consensus 32 ~~~lVF~~~~~~~-----~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~--~g~~~vLvaT-~~~~-------- 92 (172)
T 1t5i_A 32 NQVVIFVKSVQRC-----IALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFK--DFQRRILVAT-NLFG-------- 92 (172)
T ss_dssp SSEEEECSSHHHH-----HHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHH--TTSCSEEEES-SCCS--------
T ss_pred CcEEEEECCHHHH-----HHHHHHHHhcC---CCEEEEECCCCHHHHHHHHHHHH--CCCCcEEEEC-Cchh--------
Confidence 4679999999998 5666666 667 88999999999988888888776 4788999999 3322
Q ss_pred HHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcchHHHHHHHhc
Q psy7952 185 QHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK 251 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~l~ 251 (444)
.-.++..+++||.-+... ......+.+.+..+......-+++++..-.....+.+.+.++
T Consensus 93 -~Gldi~~~~~Vi~~d~p~------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 93 -RGMDIERVNIAFNYDMPE------DSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp -TTCCGGGCSEEEESSCCS------SHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred -cCcchhhCCEEEEECCCC------CHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 223445677777533321 144444555554443333223334433212223344444443
No 134
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.37 E-value=0.099 Score=47.78 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 50 ~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLL 65 (301)
T ss_dssp SEEEEECSSSSSHHHH
T ss_pred ceEEEECCCCcCHHHH
Confidence 6799999999999977
No 135
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.34 E-value=0.12 Score=48.59 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 85 ~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCEEEECSTTSCHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 5799999999999977
No 136
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.33 E-value=0.045 Score=46.09 Aligned_cols=16 Identities=6% Similarity=-0.081 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-.++.+|+|+|||..
T Consensus 4 ~i~vi~G~~gsGKTT~ 19 (184)
T 2orw_A 4 KLTVITGPMYSGKTTE 19 (184)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4578999999999977
No 137
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.33 E-value=0.11 Score=47.85 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=24.7
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEec
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTA 236 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSA 236 (444)
....++|+||+|.+... ....+.+.+...+.+..+|+.|.
T Consensus 109 ~~~~vliiDe~~~l~~~------~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD------AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHH------HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHH------HHHHHHHHHHhcCCCCeEEEEeC
Confidence 35679999999997532 23445555555555555665543
No 138
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.32 E-value=0.041 Score=50.80 Aligned_cols=33 Identities=0% Similarity=0.002 Sum_probs=22.4
Q ss_pred ccCchHHHHHHHHHHcc---CCcEEEEccCCCcccccc
Q psy7952 48 SFKCELQKKAIRHILLR---THDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a 82 (444)
.++|.+. .+..++.| ..-+++.|++|+|||..|
T Consensus 50 ~i~TG~~--~LD~~lgGl~~G~l~li~G~pG~GKTtl~ 85 (315)
T 3bh0_A 50 GVPSGFT--ELDRMTYGYKRRNFVLIAARPSMGKTAFA 85 (315)
T ss_dssp SBCCSCH--HHHHHHSSBCTTCEEEEECCTTSSHHHHH
T ss_pred CccCChH--HHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 4555443 56666632 156899999999999663
No 139
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=93.26 E-value=0.054 Score=55.46 Aligned_cols=60 Identities=15% Similarity=-0.036 Sum_probs=41.7
Q ss_pred CchHHHHHHHHHHc----cCCcEEEEccCCCcccccccccccceEEeCCCcccccc-CCccceeEEEcchhhhhcccCcc
Q psy7952 50 KCELQKKAIRHILL----RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILN-GNVRSRNGWISPILSSFYLRFRD 124 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~----~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~-~~~~~~vlil~P~~~L~~~~q~~ 124 (444)
|+.+|..++..+.. |.+...+.+.||+|||+++ .. .+.. .++ +||++|+..++ .
T Consensus 13 p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~----------a~---~~~~~~~~---~lvv~~~~~~A-----~ 71 (661)
T 2d7d_A 13 PQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTV----------SN---LIKEVNKP---TLVIAHNKTLA-----G 71 (661)
T ss_dssp CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH----------HH---HHHHHCCC---EEEECSSHHHH-----H
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHH----------HH---HHHHhCCC---EEEEECCHHHH-----H
Confidence 57899988886654 3235778899999999881 11 1111 234 49999999999 5
Q ss_pred chHhhh
Q psy7952 125 DKTSIV 130 (444)
Q Consensus 125 ~~~~~l 130 (444)
+....+
T Consensus 72 ~l~~el 77 (661)
T 2d7d_A 72 QLYSEF 77 (661)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666666
No 140
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.26 E-value=0.099 Score=52.85 Aligned_cols=54 Identities=13% Similarity=0.007 Sum_probs=38.9
Q ss_pred CchHHHHHHHHHHccC-CcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 50 KCELQKKAIRHILLRT-HDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~-~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
+|.-|.+++..+.+-. ...++.|+-|.|||.++.+++.. +. + +++|.+|+.+-+
T Consensus 176 ~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~----------~~--~---~~~vtAP~~~a~ 230 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR----------IA--G---RAIVTAPAKAST 230 (671)
T ss_dssp CCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH----------SS--S---CEEEECSSCCSC
T ss_pred CCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH----------HH--h---CcEEECCCHHHH
Confidence 5788999999988731 35799999999999774433221 21 1 348889999887
No 141
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.19 E-value=0.11 Score=47.93 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 46 ~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYL 61 (322)
T ss_dssp SEEEEESSSSSCHHHH
T ss_pred ceEEEECCCCccHHHH
Confidence 6799999999999977
No 142
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.93 E-value=0.45 Score=44.69 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.||+|+|||..
T Consensus 45 ~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCEEECBCTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6799999999999977
No 143
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.92 E-value=0.26 Score=47.71 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++++|+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4699999999999977
No 144
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.90 E-value=0.28 Score=50.97 Aligned_cols=46 Identities=24% Similarity=0.199 Sum_probs=27.4
Q ss_pred CccEEEEecccccccc-----CCCcHHHHHHHHHHHHhhCCCCcEEEEecc
Q psy7952 192 KLAYIVVDEAHCVSEW-----GHDFRPTYRRLGELRQFTGNSIPIIALTAT 237 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT 237 (444)
...+|+|||+|.+... +..-+.....+...+..+..+.+++.+-||
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 4678999999998531 111233444555555555544566666666
No 145
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.89 E-value=0.32 Score=44.06 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.||+|+|||..
T Consensus 55 ~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLL 70 (297)
T ss_dssp SEEEEESSSSSCHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 7899999999999977
No 146
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.87 E-value=0.33 Score=46.63 Aligned_cols=15 Identities=7% Similarity=-0.051 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+++++++|+|||.+
T Consensus 102 vIlivG~~G~GKTTt 116 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTT 116 (443)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 478999999999977
No 147
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.52 E-value=0.45 Score=44.82 Aligned_cols=15 Identities=13% Similarity=-0.062 Sum_probs=14.0
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 699999999999977
No 148
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.50 E-value=0.15 Score=47.78 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 118 ~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLI 133 (357)
T ss_dssp SEEEEESSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 6799999999999977
No 149
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=92.48 E-value=0.032 Score=57.91 Aligned_cols=64 Identities=11% Similarity=-0.034 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC-ccceeEEEcchhhhhcccCccchHh
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN-VRSRNGWISPILSSFYLRFRDDKTS 128 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~-~~~~vlil~P~~~L~~~~q~~~~~~ 128 (444)
.++-|++++.. .+ .+++|.|+.|||||.+ .. ..+...+...+ ...++|+++.|+..+ .+.-+
T Consensus 12 Ln~~Q~~av~~--~~-g~~lV~AgAGSGKT~v--------L~-~ri~~ll~~~~~~p~~IL~vTFTnkAA-----~Em~~ 74 (724)
T 1pjr_A 12 LNKEQQEAVRT--TE-GPLLIMAGAGSGKTRV--------LT-HRIAYLMAEKHVAPWNILAITFTNKAA-----REMRE 74 (724)
T ss_dssp SCHHHHHHHHC--CS-SCEEEEECTTSCHHHH--------HH-HHHHHHHHTTCCCGGGEEEEESSHHHH-----HHHHH
T ss_pred CCHHHHHHHhC--CC-CCEEEEEcCCCCHHHH--------HH-HHHHHHHHhcCCCHHHeEEEeccHHHH-----HHHHH
Confidence 34789999876 23 6899999999999988 11 11122222233 234789999999888 55555
Q ss_pred hh
Q psy7952 129 IV 130 (444)
Q Consensus 129 ~l 130 (444)
++
T Consensus 75 Rl 76 (724)
T 1pjr_A 75 RV 76 (724)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 150
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.28 E-value=0.033 Score=61.35 Aligned_cols=64 Identities=16% Similarity=-0.013 Sum_probs=44.4
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC---ccceeEEEcchhhhhcccCccch
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN---VRSRNGWISPILSSFYLRFRDDK 126 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~---~~~~vlil~P~~~L~~~~q~~~~ 126 (444)
.|+-|.+++..- + ++++|.|+.|||||.+ .. -.++..+..+. ...+++++++|++.+ .+.
T Consensus 11 ~t~eQ~~~i~~~--~-~~~~v~a~AGSGKT~v--------l~-~ri~~ll~~~~~~~~~~~il~~Tft~~aa-----~e~ 73 (1232)
T 3u4q_A 11 WTDDQWNAIVST--G-QDILVAAAAGSGKTAV--------LV-ERMIRKITAEENPIDVDRLLVVTFTNASA-----AEM 73 (1232)
T ss_dssp CCHHHHHHHHCC--S-SCEEEEECTTCCHHHH--------HH-HHHHHHHSCSSSCCCGGGEEEECSSHHHH-----HHH
T ss_pred CCHHHHHHHhCC--C-CCEEEEecCCCcHHHH--------HH-HHHHHHHhcCCCCCCccceEEEeccHHHH-----HHH
Confidence 367899998863 5 7999999999999988 21 11122233322 335889999999888 565
Q ss_pred Hhhh
Q psy7952 127 TSIV 130 (444)
Q Consensus 127 ~~~l 130 (444)
.+++
T Consensus 74 ~~ri 77 (1232)
T 3u4q_A 74 KHRI 77 (1232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 151
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.27 E-value=0.16 Score=49.27 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 168 ~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 168 RGILLFGPPGTGKSYL 183 (444)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 6799999999999977
No 152
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.24 E-value=0.023 Score=58.42 Aligned_cols=77 Identities=10% Similarity=-0.033 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHccCCcEEEEccCCCcccccccccccceEEeCCCccccccCC-ccceeEEEcchhhhhcccCccchHhh
Q psy7952 51 CELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN-VRSRNGWISPILSSFYLRFRDDKTSI 129 (444)
Q Consensus 51 t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~-~~~~vlil~P~~~L~~~~q~~~~~~~ 129 (444)
|+-|.+++... + .+++|.|+.|||||.+ .. ..+.+.+...+ ...++++++.|+..+ .+.-++
T Consensus 4 ~~~Q~~av~~~--~-~~~lV~AgaGSGKT~~--------l~-~ri~~ll~~~~~~~~~IL~lTfT~~Aa-----~em~~R 66 (673)
T 1uaa_A 4 NPGQQQAVEFV--T-GPCLVLAGAGSGKTRV--------IT-NKIAHLIRGCGYQARHIAAVTFTNKAA-----REMKER 66 (673)
T ss_dssp CHHHHHHHHCC--S-SEEEECCCTTSCHHHH--------HH-HHHHHHHHHHCCCGGGEEEEESSHHHH-----HHHHHH
T ss_pred CHHHHHHHhCC--C-CCEEEEeCCCCChHHH--------HH-HHHHHHHHhcCCCHHHeEEEeccHHHH-----HHHHHH
Confidence 57899999863 3 6899999999999988 11 11122222223 335789999999998 666666
Q ss_pred h--cCC---CCceeEEEEeC
Q psy7952 130 V--TGR---SDLYQLELIVS 144 (444)
Q Consensus 130 l--~~~---~~~i~~~~~~~ 144 (444)
+ ..+ ...+.+.++++
T Consensus 67 l~~~l~~~~~~~~~v~Tfhs 86 (673)
T 1uaa_A 67 VGQTLGRKEARGLMISTFHT 86 (673)
T ss_dssp HHHHSCTTTTTTSEEEEHHH
T ss_pred HHHHcCcccccCCEEEeHHH
Confidence 5 212 12356666554
No 153
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.20 E-value=0.12 Score=43.60 Aligned_cols=16 Identities=6% Similarity=-0.238 Sum_probs=13.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-.++.+|+|+|||..
T Consensus 9 ~i~v~~G~mgsGKTT~ 24 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEE 24 (191)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred EEEEEECCCCCcHHHH
Confidence 4578899999999977
No 154
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.17 E-value=0.068 Score=42.91 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=16.8
Q ss_pred HccCCcEEEEccCCCccccc
Q psy7952 62 LLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 62 ~~~~~~~ii~apTGsGKT~~ 81 (444)
.....++++.+|+|+|||..
T Consensus 21 a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHH
T ss_pred hCCCCCEEEECCCCCCHHHH
Confidence 34448999999999999977
No 155
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.99 E-value=0.65 Score=42.61 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=25.0
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEecc
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTAT 237 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT 237 (444)
..+++|+||+|.+.. ......+...+...+.+.++|+.|..
T Consensus 105 ~~~vliiDEi~~l~~-----~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL-----AESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp CEEEEEEESCCCGGG-----HHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCeEEEEECCcccCc-----HHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 578999999999751 12234455555555555666664443
No 156
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.91 E-value=0.11 Score=50.37 Aligned_cols=33 Identities=0% Similarity=0.002 Sum_probs=22.5
Q ss_pred ccCchHHHHHHHHHHcc---CCcEEEEccCCCcccccc
Q psy7952 48 SFKCELQKKAIRHILLR---THDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 48 ~~~t~~Q~~~~~~~~~~---~~~~ii~apTGsGKT~~a 82 (444)
.++|.+. .++.++.| ..-+++.|++|+|||..|
T Consensus 179 gi~TG~~--~LD~~lgGl~~G~liiIaG~pG~GKTtla 214 (444)
T 3bgw_A 179 GVPSGFT--ELDRMTYGYKRRNFVLIAARPSMGKTAFA 214 (444)
T ss_dssp SBCCSCH--HHHHHHSSBCSSCEEEEEECSSSSHHHHH
T ss_pred CcCCCcH--HHHhhcCCCCCCcEEEEEeCCCCChHHHH
Confidence 4555443 56666532 156899999999999774
No 157
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.87 E-value=0.88 Score=38.24 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=56.3
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
+++||+|+++.-+ ....+.+ ..+ +.+..++|+.+..++...+..++. +..+|+|+| . ..
T Consensus 55 ~~~lVF~~~~~~~-----~~l~~~L~~~g---~~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLvaT---------~-~~ 114 (191)
T 2p6n_A 55 PPVLIFAEKKADV-----DAIHEYLLLKG---VEAVAIHGGKDQEERTKAIEAFRE--GKKDVLVAT---------D-VA 114 (191)
T ss_dssp SCEEEECSCHHHH-----HHHHHHHHHHT---CCEEEECTTSCHHHHHHHHHHHHH--TSCSEEEEC---------H-HH
T ss_pred CCEEEEECCHHHH-----HHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhc--CCCEEEEEc---------C-ch
Confidence 3679999999998 5665666 667 889999999999888888887763 678899999 1 13
Q ss_pred HHHHhhCCccEEEEe
Q psy7952 185 QHLVRYNKLAYIVVD 199 (444)
Q Consensus 185 ~~~~~~~~~~~iViD 199 (444)
..-.++..+++||.=
T Consensus 115 ~~Gldi~~v~~VI~~ 129 (191)
T 2p6n_A 115 SKGLDFPAIQHVINY 129 (191)
T ss_dssp HTTCCCCCCSEEEES
T ss_pred hcCCCcccCCEEEEe
Confidence 334456678888763
No 158
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.85 E-value=0.27 Score=46.25 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.||+|+|||..
T Consensus 46 ~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999977
No 159
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.83 E-value=0.081 Score=54.93 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=28.0
Q ss_pred CccEEEEecccccccc-C-------CCcHHHHHHHHHHHHhhCCCCcEEEEeccCCcch
Q psy7952 192 KLAYIVVDEAHCVSEW-G-------HDFRPTYRRLGELRQFTGNSIPIIALTATAEPSV 242 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~-~-------~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~~~ 242 (444)
....|+|||+|.+... + ...+..+..+...+..+.....++.+-||=.+..
T Consensus 570 ~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 570 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 4578999999998531 1 0112233444444444555566888888855443
No 160
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.83 E-value=0.81 Score=42.50 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCC
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAE 239 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~ 239 (444)
.+..++|+||+|.+... ....+.+.+...+.+..+|+.|..+.
T Consensus 133 ~~~~vlilDE~~~L~~~------~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKD------AQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSSCHH------HHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccccCHH------HHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 35689999999995321 12445555555555566666665544
No 161
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.63 E-value=0.42 Score=46.52 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999977
No 162
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.78 E-value=1.8 Score=40.97 Aligned_cols=16 Identities=6% Similarity=-0.137 Sum_probs=13.8
Q ss_pred CcEEE--EccCCCccccc
Q psy7952 66 HDIFV--SMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii--~apTGsGKT~~ 81 (444)
..+++ .+|+|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 46788 89999999977
No 163
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.67 E-value=0.89 Score=37.45 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=56.0
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++..+ ......+ ..+ +.+..++|+.+..++......++ .+..+|+|+|. .+.
T Consensus 35 ~~~lVF~~~~~~~-----~~l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~f~--~g~~~vLvaT~-~~~-------- 95 (175)
T 2rb4_A 35 GQAIIFCQTRRNA-----KWLTVEMIQDG---HQVSLLSGELTVEQRASIIQRFR--DGKEKVLITTN-VCA-------- 95 (175)
T ss_dssp SEEEEECSCHHHH-----HHHHHHHHTTT---CCEEEECSSCCHHHHHHHHHHHH--TTSCSEEEECC-SCC--------
T ss_pred CCEEEEECCHHHH-----HHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHH--cCCCeEEEEec-chh--------
Confidence 4679999999998 5666666 667 88999999999998888888776 46789999992 221
Q ss_pred HHHHhhCCccEEEEec
Q psy7952 185 QHLVRYNKLAYIVVDE 200 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE 200 (444)
.-.++..+++||.-+
T Consensus 96 -~Gid~~~~~~Vi~~d 110 (175)
T 2rb4_A 96 -RGIDVKQVTIVVNFD 110 (175)
T ss_dssp -TTTCCTTEEEEEESS
T ss_pred -cCCCcccCCEEEEeC
Confidence 223455677887533
No 164
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.66 E-value=0.26 Score=42.26 Aligned_cols=16 Identities=0% Similarity=-0.409 Sum_probs=13.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-.++.+|.|+|||..
T Consensus 29 ~l~vitG~MgsGKTT~ 44 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEE 44 (214)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred EEEEEECCCCCcHHHH
Confidence 3456899999999977
No 165
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.37 E-value=0.9 Score=36.93 Aligned_cols=75 Identities=11% Similarity=0.167 Sum_probs=56.2
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+.+..++......++ .+..+|+|+| +.+
T Consensus 36 ~~~lVF~~~~~~~-----~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~--~g~~~vlv~T-~~~--------- 95 (163)
T 2hjv_A 36 DSCIIFCRTKEHV-----NQLTDELDDLG---YPCDKIHGGMIQEDRFDVMNEFK--RGEYRYLVAT-DVA--------- 95 (163)
T ss_dssp SSEEEECSSHHHH-----HHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHH--TTSCSEEEEC-GGG---------
T ss_pred CcEEEEECCHHHH-----HHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHH--cCCCeEEEEC-Chh---------
Confidence 3669999999998 5666666 667 88999999999988888887776 4678999999 222
Q ss_pred HHHHhhCCccEEEEec
Q psy7952 185 QHLVRYNKLAYIVVDE 200 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE 200 (444)
..-.++..+++||.-+
T Consensus 96 ~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 96 ARGIDIENISLVINYD 111 (163)
T ss_dssp TTTCCCSCCSEEEESS
T ss_pred hcCCchhcCCEEEEeC
Confidence 2333456678887643
No 166
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.02 E-value=0.54 Score=40.28 Aligned_cols=16 Identities=0% Similarity=-0.398 Sum_probs=13.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-.++.+|.|+|||..
T Consensus 29 ~I~vitG~M~sGKTT~ 44 (219)
T 3e2i_A 29 WIECITGSMFSGKSEE 44 (219)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4568899999999976
No 167
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.09 E-value=1 Score=36.64 Aligned_cols=75 Identities=12% Similarity=0.235 Sum_probs=55.7
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ......+ ..+ +.+..++|+.+..++.......+ .+...|+|+| +.+
T Consensus 31 ~~~lVF~~~~~~~-----~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~--~g~~~vlv~T-~~~--------- 90 (165)
T 1fuk_A 31 TQAVIFCNTRRKV-----EELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFR--SGSSRILIST-DLL--------- 90 (165)
T ss_dssp SCEEEEESSHHHH-----HHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHH--TTSCSEEEEE-GGG---------
T ss_pred CCEEEEECCHHHH-----HHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHH--cCCCEEEEEc-Chh---------
Confidence 4669999999998 5666666 667 88999999999988888888776 4778999999 221
Q ss_pred HHHHhhCCccEEEEec
Q psy7952 185 QHLVRYNKLAYIVVDE 200 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE 200 (444)
..-.++..+++||.-+
T Consensus 91 ~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYD 106 (165)
T ss_dssp TTTCCCCSCSEEEESS
T ss_pred hcCCCcccCCEEEEeC
Confidence 2223455677777643
No 168
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.01 E-value=0.74 Score=43.00 Aligned_cols=26 Identities=8% Similarity=-0.082 Sum_probs=20.0
Q ss_pred HHHHHHc-c----CCcEEEEccCCCcccccc
Q psy7952 57 AIRHILL-R----THDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 57 ~~~~~~~-~----~~~~ii~apTGsGKT~~a 82 (444)
.++.++. | .+-+++.+|+|+|||..|
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLa 80 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLT 80 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 5677775 2 156899999999999774
No 169
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.94 E-value=0.81 Score=52.19 Aligned_cols=34 Identities=6% Similarity=-0.059 Sum_probs=24.2
Q ss_pred cccCchHHHHHHHHHHc-c----CCcEEEEccCCCcccccc
Q psy7952 47 DSFKCELQKKAIRHILL-R----THDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 47 ~~~~t~~Q~~~~~~~~~-~----~~~~ii~apTGsGKT~~a 82 (444)
..++|-.. .+..++. | .+.+++.+|+|+|||..|
T Consensus 1406 ~~isTG~~--~LD~lLG~GGi~~g~~vll~GppGtGKT~LA 1444 (2050)
T 3cmu_A 1406 ETISTGSL--SLDIALGAGGLPMGRIVEIYGPESSGKTTLT 1444 (2050)
T ss_dssp CEECCSCH--HHHHHHSSSSEETTSEEEEECCTTSSHHHHH
T ss_pred ccccCCCH--HHHHhcCCCCccCCeEEEEECCCCCCHHHHH
Confidence 34455444 3777776 2 278999999999999774
No 170
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=86.77 E-value=0.7 Score=40.02 Aligned_cols=16 Identities=6% Similarity=-0.207 Sum_probs=13.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-.++.+|.|+|||..
T Consensus 20 ~l~v~~G~MgsGKTT~ 35 (234)
T 2orv_A 20 QIQVILGPMFSGKSTE 35 (234)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred EEEEEECCCCCcHHHH
Confidence 5578899999999977
No 171
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=86.62 E-value=0.87 Score=38.03 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=46.4
Q ss_pred ccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHH
Q psy7952 104 VRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHY 182 (444)
Q Consensus 104 ~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~ 182 (444)
...++||+|+++.-+ ....+.+ ..+ +.+..++|+.+..++...+..++. +...|+|+| +.
T Consensus 45 ~~~k~lVF~~~~~~~-----~~l~~~L~~~g---~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vLvaT-~~-------- 105 (185)
T 2jgn_A 45 KDSLTLVFVETKKGA-----DSLEDFLYHEG---YACTSIHGDRSQRDREEALHQFRS--GKSPILVAT-AV-------- 105 (185)
T ss_dssp CCSCEEEEESCHHHH-----HHHHHHHHHTT---CCEEEEC--------CHHHHHHHH--TSSSEEEEE-C---------
T ss_pred CCCeEEEEECCHHHH-----HHHHHHHHHcC---CceEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEc-Ch--------
Confidence 345679999999998 5666666 667 889999999988888777777663 678899999 22
Q ss_pred HHHHHHhhCCccEEEE
Q psy7952 183 LLQHLVRYNKLAYIVV 198 (444)
Q Consensus 183 ~~~~~~~~~~~~~iVi 198 (444)
...-.++..+++||.
T Consensus 106 -~~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 106 -AARGLDISNVKHVIN 120 (185)
T ss_dssp ------CCCSBSEEEE
T ss_pred -hhcCCCcccCCEEEE
Confidence 223345567787775
No 172
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.37 E-value=1.1 Score=46.48 Aligned_cols=15 Identities=20% Similarity=0.069 Sum_probs=13.9
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
++++.+|||+|||..
T Consensus 523 ~~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 523 SFIFLGPTGVGKTEL 537 (758)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 599999999999977
No 173
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.83 E-value=1.1 Score=42.06 Aligned_cols=26 Identities=8% Similarity=-0.138 Sum_probs=19.9
Q ss_pred HHHHHHc-c----CCcEEEEccCCCcccccc
Q psy7952 57 AIRHILL-R----THDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 57 ~~~~~~~-~----~~~~ii~apTGsGKT~~a 82 (444)
.++.++. | ..-++|.+|+|+|||..|
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtla 91 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLA 91 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHH
Confidence 5777776 2 156899999999999773
No 174
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.76 E-value=0.49 Score=46.62 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=14.8
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
.-++|.|++|+|||..|
T Consensus 243 ~l~li~G~pG~GKT~la 259 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFV 259 (503)
T ss_dssp CEEEEEESSCHHHHHHH
T ss_pred eEEEEeecCCCCchHHH
Confidence 56899999999999774
No 175
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.71 E-value=0.12 Score=45.35 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHhhCCccEEEEeccccccc---cCCCcHHHHHHHHHHHHhhCCCCcEEEEecc
Q psy7952 185 QHLVRYNKLAYIVVDEAHCVSE---WGHDFRPTYRRLGELRQFTGNSIPIIALTAT 237 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE~H~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT 237 (444)
.........+++|+|-...+.. .....+.....+..+.+... +.+++++-.
T Consensus 128 ~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~--i~vi~~~q~ 181 (251)
T 2zts_A 128 YRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMG--VTTILTTEA 181 (251)
T ss_dssp HHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHC--CEEEEEECC
T ss_pred HHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcC--CCeEEEEEE
Confidence 3444556789999999987632 11224445555555555543 556665543
No 176
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.41 E-value=0.82 Score=42.78 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.+|||+|||.+
T Consensus 52 ~~vll~GppGtGKT~l 67 (363)
T 3hws_A 52 SNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999987
No 177
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=85.17 E-value=1.4 Score=37.68 Aligned_cols=73 Identities=11% Similarity=0.117 Sum_probs=54.7
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+.+...+.......+ .+..+|+|+|. .+
T Consensus 32 ~~~lVF~~~~~~~-----~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~--~g~~~vlvaT~-~~--------- 91 (212)
T 3eaq_A 32 DRAMVFTRTKAET-----EEIAQGLLRLG---HPAQALHGDLSQGERERVLGAFR--QGEVRVLVATD-VA--------- 91 (212)
T ss_dssp SCEEEECSSHHHH-----HHHHHHHHHHT---CCEEEECSSSCHHHHHHHHHHHH--SSSCCEEEECT-TT---------
T ss_pred CeEEEEeCCHHHH-----HHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHH--CCCCeEEEecC-hh---------
Confidence 3669999999988 5666666 667 88999999999998888888776 46789999992 22
Q ss_pred HHHHhhCCccEEEE
Q psy7952 185 QHLVRYNKLAYIVV 198 (444)
Q Consensus 185 ~~~~~~~~~~~iVi 198 (444)
..-.+...+++||.
T Consensus 92 ~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 92 ARGLDIPQVDLVVH 105 (212)
T ss_dssp TCSSSCCCBSEEEE
T ss_pred hcCCCCccCcEEEE
Confidence 12334556777773
No 178
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.13 E-value=1.3 Score=41.11 Aligned_cols=26 Identities=12% Similarity=-0.047 Sum_probs=20.1
Q ss_pred HHHHHHc-c----CCcEEEEccCCCcccccc
Q psy7952 57 AIRHILL-R----THDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 57 ~~~~~~~-~----~~~~ii~apTGsGKT~~a 82 (444)
.++.++. | .+-+++.+|+|+|||..|
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 5677776 3 156899999999999773
No 179
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=84.40 E-value=0.81 Score=39.09 Aligned_cols=31 Identities=23% Similarity=0.043 Sum_probs=26.3
Q ss_pred CchHHHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 50 KCELQKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 50 ~t~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
.+.-|..++..+..| .-+.+.+|.|+|||..
T Consensus 8 k~~g~~~~l~~i~~G-e~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTN-TIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHC-SEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCC-CEEEEECCCCCCHHHH
Confidence 455678889999888 8889999999999976
No 180
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.70 E-value=1.1 Score=46.96 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++++|+|+|||..
T Consensus 239 ~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEECSCTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 6799999999999977
No 181
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.36 E-value=1.2 Score=40.32 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.+|+|+|||..
T Consensus 51 ~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 7899999999999977
No 182
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=82.83 E-value=2.1 Score=39.30 Aligned_cols=27 Identities=11% Similarity=-0.162 Sum_probs=20.2
Q ss_pred HHHHHHcc----CCcEEEEccCCCccccccc
Q psy7952 57 AIRHILLR----THDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 57 ~~~~~~~~----~~~~ii~apTGsGKT~~a~ 83 (444)
.++.++.| ..-+++.+|+|+|||..|.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHH
Confidence 56677643 1568999999999997743
No 183
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=82.47 E-value=0.56 Score=42.78 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=16.3
Q ss_pred ccCCcEEEEccCCCccccc
Q psy7952 63 LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~ 81 (444)
....++++.+|||+|||.+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp STTSCEEEESCTTSCHHHH
T ss_pred CCCCcEEEECCCCchHHHH
Confidence 3447899999999999977
No 184
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=82.26 E-value=1.5 Score=41.09 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=58.7
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+....++....+.++ .+..+|+|+|.- .
T Consensus 244 ~~~lvf~~~~~~~-----~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~--~g~~~vlv~T~~----------~ 303 (395)
T 3pey_A 244 GSSIIFVATKKTA-----NVLYGKLKSEG---HEVSILHGDLQTQERDRLIDDFR--EGRSKVLITTNV----------L 303 (395)
T ss_dssp SEEEEECSCHHHH-----HHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHH--TTSCCEEEECGG----------G
T ss_pred CCEEEEeCCHHHH-----HHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHH--CCCCCEEEECCh----------h
Confidence 4779999999998 5666666 667 88999999999998888888776 467889999921 1
Q ss_pred HHHHhhCCccEEEEecccc
Q psy7952 185 QHLVRYNKLAYIVVDEAHC 203 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE~H~ 203 (444)
..-.++..+++||.-+...
T Consensus 304 ~~Gidip~~~~Vi~~~~p~ 322 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPT 322 (395)
T ss_dssp SSSCCCTTEEEEEESSCCB
T ss_pred hcCCCcccCCEEEEcCCCC
Confidence 2334556788888765544
No 185
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=81.89 E-value=3.1 Score=39.32 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=56.9
Q ss_pred cceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHH
Q psy7952 105 RSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYL 183 (444)
Q Consensus 105 ~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~ 183 (444)
..++||+|+++.-+ ....+.+ ..+ +.+..++|+....++......++. +..+|+|+| . .
T Consensus 276 ~~~~lVf~~~~~~~-----~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlvaT---------~-~ 335 (417)
T 2i4i_A 276 DSLTLVFVETKKGA-----DSLEDFLYHEG---YACTSIHGDRSQRDREEALHQFRS--GKSPILVAT---------A-V 335 (417)
T ss_dssp TCEEEEECSSHHHH-----HHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHH--TSSCEEEEC---------H-H
T ss_pred CCeEEEEECCHHHH-----HHHHHHHHHCC---CCeeEecCCCCHHHHHHHHHHHHc--CCCCEEEEC---------C-h
Confidence 35689999999999 5656666 667 889999999999888888887763 678899999 2 2
Q ss_pred HHHHHhhCCccEEEE
Q psy7952 184 LQHLVRYNKLAYIVV 198 (444)
Q Consensus 184 ~~~~~~~~~~~~iVi 198 (444)
...-.++..+++||.
T Consensus 336 ~~~Gidip~v~~Vi~ 350 (417)
T 2i4i_A 336 AARGLDISNVKHVIN 350 (417)
T ss_dssp HHTTSCCCCEEEEEE
T ss_pred hhcCCCcccCCEEEE
Confidence 344456667787774
No 186
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=81.64 E-value=1.9 Score=40.73 Aligned_cols=75 Identities=11% Similarity=0.093 Sum_probs=56.7
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+....++....+.++ .+..+|+|+|.- .
T Consensus 267 ~~~lvf~~~~~~~-----~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~--~g~~~vlv~T~~----------~ 326 (412)
T 3fht_A 267 AQAMIFCHTRKTA-----SWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFR--EGKEKVLVTTNV----------C 326 (412)
T ss_dssp SEEEEECSSHHHH-----HHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHH--TTSCSEEEECGG----------G
T ss_pred CCEEEEeCCHHHH-----HHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHHH--CCCCcEEEEcCc----------c
Confidence 4789999999998 5666666 667 88999999999999988888876 467889999921 2
Q ss_pred HHHHhhCCccEEEEec
Q psy7952 185 QHLVRYNKLAYIVVDE 200 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE 200 (444)
..-.++..+++||.-.
T Consensus 327 ~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 327 ARGIDVEQVSVVINFD 342 (412)
T ss_dssp TSSCCCTTEEEEEESS
T ss_pred ccCCCccCCCEEEEEC
Confidence 2334556778887533
No 187
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.46 E-value=1.6 Score=46.04 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=14.0
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
++++.+|||+|||.+
T Consensus 590 ~vLl~Gp~GtGKT~l 604 (854)
T 1qvr_A 590 SFLFLGPTGVGKTEL 604 (854)
T ss_dssp EEEEBSCSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999977
No 188
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.44 E-value=0.84 Score=37.66 Aligned_cols=16 Identities=6% Similarity=-0.105 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+|+|+|||..
T Consensus 44 ~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAI 59 (195)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CceEEECCCCCCHHHH
Confidence 6799999999999977
No 189
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.20 E-value=0.61 Score=45.72 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=19.0
Q ss_pred HHHHHHccCCcEEEEccCCCccccc
Q psy7952 57 AIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+...+..+ .++++.||+|+|||..
T Consensus 34 l~~al~~~-~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 34 CLLAALSG-ESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHT-CEEEEECCSSSSHHHH
T ss_pred HHHHHhcC-CeeEeecCchHHHHHH
Confidence 34444455 8999999999999977
No 190
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=80.93 E-value=0.83 Score=41.71 Aligned_cols=42 Identities=2% Similarity=-0.073 Sum_probs=24.9
Q ss_pred cEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhh
Q psy7952 67 DIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSF 118 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~ 118 (444)
.+.+.+|+|+|||..++.++. . ....+...+++|+....++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~---------~-~~~~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS---------S-YMRQYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH---------H-HHHHCTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHH---------H-HHhcCCCceEEEEeccchhh
Confidence 478999999999977432111 1 22221123458877666655
No 191
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=80.67 E-value=3 Score=35.02 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=26.2
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCCc
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEP 240 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~~ 240 (444)
..+++||+||+-.....+- -+ ...+..++...+....+|+.+--+++
T Consensus 119 ~~yDlvILDEi~~al~~g~--l~-~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDY--LP-LEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp TTCSEEEEETHHHHHHTTS--SC-HHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred CCCCEEEEeCCCccccCCC--CC-HHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 5799999999966433331 11 13344555555654445444444443
No 192
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=80.50 E-value=2.5 Score=39.12 Aligned_cols=27 Identities=7% Similarity=-0.330 Sum_probs=20.1
Q ss_pred HHHHHHccC----CcEEEEccCCCccccccc
Q psy7952 57 AIRHILLRT----HDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 57 ~~~~~~~~~----~~~ii~apTGsGKT~~a~ 83 (444)
.+..++.|. .-+++.+|+|+|||..|.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 467777531 457999999999997743
No 193
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=80.31 E-value=0.82 Score=38.57 Aligned_cols=16 Identities=6% Similarity=0.036 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+++++.+|+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999977
No 194
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=79.74 E-value=3.2 Score=37.62 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=55.5
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+.+...+.......+. +..+|+|+|. .+
T Consensus 29 ~~~LVF~~t~~~~-----~~l~~~L~~~g---~~~~~lhg~l~~~~r~~~~~~f~~--g~~~vLVaT~-va--------- 88 (300)
T 3i32_A 29 DRAMVFTRTKAET-----EEIAQGLLRLG---HPAQALHGDMSQGERERVMGAFRQ--GEVRVLVATD-VA--------- 88 (300)
T ss_dssp SSEEEECSSHHHH-----HHHHHHHHTTT---CCEEEECSCCCTHHHHHHHHHHHH--TSCCEEEECS-TT---------
T ss_pred CCEEEEECCHHHH-----HHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhc--CCceEEEEec-hh---------
Confidence 4669999999988 6666666 667 889999999999888888877763 6789999992 21
Q ss_pred HHHHhhCCccEEEE
Q psy7952 185 QHLVRYNKLAYIVV 198 (444)
Q Consensus 185 ~~~~~~~~~~~iVi 198 (444)
..-.+...+++||.
T Consensus 89 ~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 89 ARGLDIPQVDLVVH 102 (300)
T ss_dssp TCSTTCCCCSEEEE
T ss_pred hcCccccceeEEEE
Confidence 23345567888874
No 195
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=79.47 E-value=4.3 Score=38.41 Aligned_cols=26 Identities=4% Similarity=-0.317 Sum_probs=19.1
Q ss_pred HHHHHHcc----CCcEEEEccCCCcccccc
Q psy7952 57 AIRHILLR----THDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 57 ~~~~~~~~----~~~~ii~apTGsGKT~~a 82 (444)
.+..++.| ..-+.|.+|+|+|||..+
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLC 195 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHH
Confidence 35566643 156899999999999773
No 196
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=78.54 E-value=5 Score=38.36 Aligned_cols=72 Identities=10% Similarity=0.112 Sum_probs=55.6
Q ss_pred eeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHH
Q psy7952 107 RNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185 (444)
Q Consensus 107 ~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 185 (444)
++||+|+++.-+ ....+.+ ..+ +.+..++|+....++...+..++ .+..+|+|+|.- ..
T Consensus 302 ~~lVF~~t~~~a-----~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~l~~F~--~g~~~vLvaT~v----------~~ 361 (434)
T 2db3_A 302 GTIVFVETKRGA-----DFLASFLSEKE---FPTTSIHGDRLQSQREQALRDFK--NGSMKVLIATSV----------AS 361 (434)
T ss_dssp TEEEECSSHHHH-----HHHHHHHHHTT---CCEEEESTTSCHHHHHHHHHHHH--TSSCSEEEECGG----------GT
T ss_pred CEEEEEeCcHHH-----HHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHHH--cCCCcEEEEchh----------hh
Confidence 479999999998 5666666 667 88999999999999988888876 467899999931 22
Q ss_pred HHHhhCCccEEEE
Q psy7952 186 HLVRYNKLAYIVV 198 (444)
Q Consensus 186 ~~~~~~~~~~iVi 198 (444)
.-.++.++++||.
T Consensus 362 rGlDi~~v~~VI~ 374 (434)
T 2db3_A 362 RGLDIKNIKHVIN 374 (434)
T ss_dssp SSCCCTTCCEEEE
T ss_pred CCCCcccCCEEEE
Confidence 3345667888875
No 197
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=78.44 E-value=0.92 Score=37.27 Aligned_cols=16 Identities=6% Similarity=-0.097 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.+|+|+|||..
T Consensus 44 ~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 44 NNPILLGDPGVGKTAI 59 (187)
T ss_dssp CEEEEESCGGGCHHHH
T ss_pred CceEEECCCCCCHHHH
Confidence 6799999999999977
No 198
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.14 E-value=3.9 Score=46.76 Aligned_cols=17 Identities=6% Similarity=-0.089 Sum_probs=15.5
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
+.+++.+|+|+|||..|
T Consensus 1082 ~~vll~G~~GtGKT~la 1098 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLT 1098 (2050)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 78999999999999773
No 199
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=77.90 E-value=4.5 Score=37.21 Aligned_cols=75 Identities=9% Similarity=0.151 Sum_probs=56.7
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+.+..++......++ .+..+|+|+|. . .
T Consensus 239 ~~~lvf~~~~~~~-----~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~--~~~~~vlv~T~-~---------~ 298 (367)
T 1hv8_A 239 FYGLVFCKTKRDT-----KELASMLRDIG---FKAGAIHGDLSQSQREKVIRLFK--QKKIRILIATD-V---------M 298 (367)
T ss_dssp CCEEEECSSHHHH-----HHHHHHHHHTT---CCEEEECSSSCHHHHHHHHHHHH--TTSSSEEEECT-T---------H
T ss_pred CcEEEEECCHHHH-----HHHHHHHHhcC---CCeEEeeCCCCHHHHHHHHHHHH--cCCCeEEEECC-h---------h
Confidence 4679999999998 5555666 667 88999999999988888887776 46789999992 2 3
Q ss_pred HHHHhhCCccEEEEec
Q psy7952 185 QHLVRYNKLAYIVVDE 200 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE 200 (444)
..-.++..+++||.-+
T Consensus 299 ~~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 299 SRGIDVNDLNCVINYH 314 (367)
T ss_dssp HHHCCCSCCSEEEESS
T ss_pred hcCCCcccCCEEEEec
Confidence 3445666788887543
No 200
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.56 E-value=0.54 Score=41.96 Aligned_cols=16 Identities=6% Similarity=0.017 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+|+|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 5799999999999977
No 201
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=77.02 E-value=0.91 Score=41.77 Aligned_cols=22 Identities=14% Similarity=0.073 Sum_probs=17.8
Q ss_pred HHHHccCCcEEEEccCCCccccc
Q psy7952 59 RHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 59 ~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
..+..+ +++++.+|+|+|||..
T Consensus 41 ~~l~~~-~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 41 IGICTG-GHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHT-CCEEEESCCCHHHHHH
T ss_pred HHHHcC-CeEEEECCCCCcHHHH
Confidence 334445 8999999999999977
No 202
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=76.97 E-value=2 Score=38.09 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHhCCcccCchHHHHHHHHHHccC---C-cEEEEccCCCcccccc
Q psy7952 31 VSEQELTAKLKALFGFDSFKCELQKKAIRHILLRT---H-DIFVSMPTGAVSLVGS 82 (444)
Q Consensus 31 ~~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~---~-~~ii~apTGsGKT~~a 82 (444)
.....+.+.|+.. |++. ..=..++..++.+. + .+++.+|+|+|||..|
T Consensus 70 ~~~n~i~~~l~~q-g~~~---~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 70 ISSNRIYKILELN-GYDP---QYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp GGGCHHHHHHHHT-TCCH---HHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred CchHHHHHHHHHc-CCCH---HHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 4566788888764 7773 12344577777763 2 4999999999999774
No 203
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=76.91 E-value=5.2 Score=36.69 Aligned_cols=16 Identities=13% Similarity=-0.103 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|+|+|||..
T Consensus 130 ~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTT 145 (328)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578999999999976
No 204
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=76.25 E-value=1.6 Score=42.97 Aligned_cols=28 Identities=7% Similarity=-0.194 Sum_probs=20.3
Q ss_pred HHHHHHHHH-HccCCcEEEEccCCCccccc
Q psy7952 53 LQKKAIRHI-LLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~~~-~~~~~~~ii~apTGsGKT~~ 81 (444)
.+..-+... ..| ..+++.+|||||||..
T Consensus 248 ~~l~~l~~~v~~g-~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 248 GVLAYLWLAIEHK-FSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHHHHHHTT-CCEEEEESTTSSHHHH
T ss_pred HHHHHHHHHHhCC-CEEEEECCCCCCHHHH
Confidence 344444443 455 7899999999999976
No 205
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=75.62 E-value=1.6 Score=39.77 Aligned_cols=16 Identities=6% Similarity=-0.025 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+++++.||||+|||..
T Consensus 153 ~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 7899999999999977
No 206
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=75.32 E-value=0.84 Score=41.32 Aligned_cols=16 Identities=6% Similarity=-0.270 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++++|+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5689999999999977
No 207
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=74.69 E-value=1.8 Score=40.23 Aligned_cols=25 Identities=8% Similarity=-0.258 Sum_probs=19.6
Q ss_pred HHHHHHc-cC----CcEEEEccCCCccccc
Q psy7952 57 AIRHILL-RT----HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~-~~----~~~ii~apTGsGKT~~ 81 (444)
.++.++. |. .-++|.+|+|+|||..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTL 77 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTL 77 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHH
Confidence 5777776 31 4589999999999977
No 208
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=76.73 E-value=0.62 Score=38.25 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=43.1
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEEC
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVT 171 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 171 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+....++......++ .+..+|+|+|
T Consensus 31 ~~~iVF~~~~~~~-----~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~--~g~~~vLvaT 87 (170)
T 2yjt_D 31 TRSIVFVRKRERV-----HELANWLREAG---INNCYLEGEMVQGKRNEAIKRLT--EGRVNVLVAT 87 (170)
Confidence 4669999999988 5555555 556 88889999988877777776655 3577899999
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.17 E-value=0.99 Score=39.78 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 46 ~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 6799999999999977
No 210
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=73.43 E-value=1.3 Score=37.00 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6799999999999976
No 211
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=73.14 E-value=1.3 Score=36.68 Aligned_cols=16 Identities=6% Similarity=-0.118 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+.+|+|+|||..
T Consensus 6 ~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6789999999999977
No 212
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=73.10 E-value=9.9 Score=39.41 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=56.9
Q ss_pred CceEEEEecccchHHHHHHHHHhh--------------cCHHHHHHHHHHHhcCCccEEEEcCc-cccccccCCccEEEE
Q psy7952 300 NNCGIIYCRTREHTTDLADALRRK--------------VNKHERSRVQESFMRGEINVITATIS-FGMGIDRQNVRFVVH 364 (444)
Q Consensus 300 ~~~~iVf~~s~~~~~~l~~~L~~~--------------~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gidi~~~~~Vi~ 364 (444)
+.+++|.++++.-+.+.++.+.+. ++..++...++.+.+|...|+|+|.. +...+++.++++||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 678999999999999988887765 56778888999999999999999975 455678888998886
Q ss_pred eCCC
Q psy7952 365 WGMP 368 (444)
Q Consensus 365 ~~~p 368 (444)
....
T Consensus 497 DEaH 500 (780)
T 1gm5_A 497 DEQH 500 (780)
T ss_dssp ESCC
T ss_pred cccc
Confidence 5544
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=72.74 E-value=3.2 Score=39.81 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|+|||..
T Consensus 100 ~vI~ivG~~GvGKTTl 115 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTT 115 (432)
T ss_dssp CCEEEECCSSSSTTHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3688999999999977
No 214
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=72.50 E-value=1.1 Score=43.55 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+++++.+|+|+|||..
T Consensus 64 ~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTAL 79 (456)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcCCHHHH
Confidence 5799999999999977
No 215
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=71.79 E-value=2 Score=40.02 Aligned_cols=23 Identities=22% Similarity=0.013 Sum_probs=17.3
Q ss_pred HHHHccC-CcEEEEccCCCccccc
Q psy7952 59 RHILLRT-HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 59 ~~~~~~~-~~~ii~apTGsGKT~~ 81 (444)
+.+++|. --++..++||+|||.+
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHhCCCCEEEEEeCCCCCCccEE
Confidence 4455662 2378999999999998
No 216
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=71.45 E-value=3.7 Score=46.21 Aligned_cols=101 Identities=14% Similarity=0.033 Sum_probs=59.8
Q ss_pred HHHHHHcc-----CCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhhc
Q psy7952 57 AIRHILLR-----THDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVT 131 (444)
Q Consensus 57 ~~~~~~~~-----~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l~ 131 (444)
.+..++-+ .+-+.+.+|+|+|||..| ++.+.+....++.. +|+.+-.+|- ...++.+.
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~---------~~~~a~~~~~g~~~---~~i~~e~~~~-----~~~~~~~G 1480 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLT---------LQVIAAAQREGKTC---AFIDAEHALD-----PIYARKLG 1480 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHH---------HHHHHHHHHTTCCE---EEECTTSCCC-----HHHHHHTT
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHH---------HHHHHHHHhcCCeE---EEEecCCCCC-----HHHHHHcC
Confidence 45666652 156899999999999873 22211223334444 8998888887 44444442
Q ss_pred CCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHHHHhhCCccEEEEeccccccc
Q psy7952 132 GRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSE 206 (444)
Q Consensus 132 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~~~~~~~~~~iViDE~H~~~~ 206 (444)
.. --++++.-|+.-.. .-........-..+++||||.+-.+..
T Consensus 1481 v~------------------------------~~~l~~~~p~~~e~--~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1481 VD------------------------------IDNLLCSQPDTGEQ--ALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp CC------------------------------GGGCEEECCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred CC------------------------------HHHeEEeCCCcHHH--HHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 22 11255666655311 112234444556799999999998854
No 217
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=70.63 E-value=1.6 Score=36.83 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+.+.+|+|+|||..
T Consensus 5 ~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTL 20 (198)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6789999999999977
No 218
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.42 E-value=1.8 Score=40.44 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=16.9
Q ss_pred HHccCCcEEEEccCCCccccc
Q psy7952 61 ILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 61 ~~~~~~~~ii~apTGsGKT~~ 81 (444)
+..| ..+++.+|||+|||..
T Consensus 172 i~~G-~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLE-RVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTT-CCEEEEESSSSCHHHH
T ss_pred HhcC-CEEEEECCCCCCHHHH
Confidence 3456 8999999999999966
No 219
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.16 E-value=1.8 Score=36.72 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHhCCcccCchHHHHHHHHHHccC---CcEEEEccCCCccccc
Q psy7952 32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRT---HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 32 ~~~~~~~~l~~~~g~~~~~t~~Q~~~~~~~~~~~---~~~ii~apTGsGKT~~ 81 (444)
+-..+.+.|+-. |.+. . .. ..++..++.+- +.+++.+|+|+|||..
T Consensus 26 ~w~~I~~~l~yq-~~~~-~-~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 26 DWRPIVQFLRYQ-QIEF-I-TF-LGALKSFLKGTPKKNCLVFCGPANTGKSYF 74 (212)
T ss_dssp CSHHHHHHHHHT-TCCH-H-HH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHH
T ss_pred CHHHHHHHHHHc-CcCH-H-HH-HHHHHHHHhcCCcccEEEEECCCCCCHHHH
Confidence 345666777743 5442 2 23 55666666652 3589999999999966
No 220
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=70.14 E-value=2.5 Score=36.20 Aligned_cols=15 Identities=13% Similarity=-0.077 Sum_probs=13.8
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+|+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999977
No 221
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=70.08 E-value=2.7 Score=40.13 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=21.6
Q ss_pred HHHHHHHHHHccC-CcEEEEccCCCccccc
Q psy7952 53 LQKKAIRHILLRT-HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~~~~~~~-~~~ii~apTGsGKT~~ 81 (444)
-+..++..++... .-+++.+|||||||..
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 4666777766432 4579999999999976
No 222
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=69.75 E-value=1.4 Score=36.40 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||.+
T Consensus 6 ~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5789999999999977
No 223
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=69.57 E-value=7.5 Score=36.17 Aligned_cols=76 Identities=7% Similarity=0.034 Sum_probs=56.1
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+....++....+.++ .+...|+|+|. .+
T Consensus 251 ~~~lvf~~~~~~~-----~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~--~~~~~vlv~T~-~~--------- 310 (391)
T 1xti_A 251 NQVVIFVKSVQRC-----IALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFK--DFQRRILVATN-LF--------- 310 (391)
T ss_dssp SEEEEECSCHHHH-----HHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHH--TTCCSEEEESC-CC---------
T ss_pred CcEEEEeCcHHHH-----HHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHh--cCCCcEEEECC-hh---------
Confidence 4789999999998 5666666 667 88999999999988888888776 46788999993 22
Q ss_pred HHHHhhCCccEEEEecc
Q psy7952 185 QHLVRYNKLAYIVVDEA 201 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE~ 201 (444)
..-.++..+++||.-+.
T Consensus 311 ~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 311 GRGMDIERVNIAFNYDM 327 (391)
T ss_dssp SSCBCCTTEEEEEESSC
T ss_pred hcCCCcccCCEEEEeCC
Confidence 12234556788876443
No 224
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=69.54 E-value=1.4 Score=37.17 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=16.7
Q ss_pred HHccCCcEEEEccCCCccccc
Q psy7952 61 ILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 61 ~~~~~~~~ii~apTGsGKT~~ 81 (444)
+..+ +-+++.+|+|+|||..
T Consensus 9 ~~~~-~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARI-PPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCC-CCEEEECCTTSCHHHH
T ss_pred cccC-CEEEEECCCCCCHHHH
Confidence 3455 7899999999999977
No 225
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=69.37 E-value=1.3 Score=39.34 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=15.5
Q ss_pred ccCCcEEEEccCCCccccc
Q psy7952 63 LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~ 81 (444)
.| .-+.+.+|||+|||..
T Consensus 24 ~g-~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 24 KM-GLILVTGPTGSGKSTT 41 (261)
T ss_dssp SS-EEEEEECSTTCSHHHH
T ss_pred CC-CEEEEECCCCccHHHH
Confidence 44 6789999999999976
No 226
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=69.23 E-value=2 Score=39.62 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.||+|+|||..
T Consensus 46 ~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTA 61 (350)
T ss_dssp CCEEEECCGGGCTTHH
T ss_pred ceEEEECCCCccHHHH
Confidence 6799999999999977
No 227
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=69.15 E-value=1.6 Score=40.24 Aligned_cols=18 Identities=17% Similarity=0.003 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccccccc
Q psy7952 66 HDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~ 83 (444)
.-++|.+|||+|||..|.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999997743
No 228
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=69.06 E-value=1.4 Score=41.03 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.||+|+|||..
T Consensus 71 ~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAI 86 (368)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4799999999999977
No 229
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=69.06 E-value=7.8 Score=37.68 Aligned_cols=15 Identities=13% Similarity=0.003 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+.+.+|+|+|||..
T Consensus 295 VI~LVGpNGSGKTTL 309 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT 309 (503)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCcccHHHH
Confidence 478999999999976
No 230
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=69.02 E-value=2.6 Score=38.67 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=17.2
Q ss_pred HHHHccCCc--EEEEccCCCccccc
Q psy7952 59 RHILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 59 ~~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
..+++| .+ ++..++||+|||.+
T Consensus 71 ~~~l~G-~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 71 KDVLEG-YNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHTT-CCEEEEEECSTTSSHHHH
T ss_pred HHHhCC-CeEEEEEECCCCCCCceE
Confidence 345566 44 78899999999988
No 231
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=68.79 E-value=1.8 Score=36.76 Aligned_cols=16 Identities=25% Similarity=0.077 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+++.+|+|+|||..
T Consensus 9 ~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECcCCCCHHHH
Confidence 5689999999999977
No 232
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=68.69 E-value=1.6 Score=40.92 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.+|+|+|||.+
T Consensus 73 ~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 73 SNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCCHHHH
Confidence 6899999999999977
No 233
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=68.63 E-value=1.7 Score=35.26 Aligned_cols=15 Identities=13% Similarity=-0.060 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+++.||+|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999977
No 234
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=68.20 E-value=0.81 Score=44.07 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=15.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.|+||+|||..
T Consensus 54 ~h~~i~G~tGsGKs~~ 69 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVL 69 (437)
T ss_dssp GCEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 7899999999999987
No 235
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=68.17 E-value=7.7 Score=38.16 Aligned_cols=73 Identities=7% Similarity=0.091 Sum_probs=56.2
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||.|+++.-+ .+..+.+ ..+ +.+..++++.+..++......+. .+..+|+|+|.--
T Consensus 237 ~~~IVf~~sr~~~-----e~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~--~g~~~vlVaT~a~---------- 296 (523)
T 1oyw_A 237 KSGIIYCNSRAKV-----EDTAARLQSKG---ISAAAYHAGLENNVRADVQEKFQ--RDDLQIVVATVAF---------- 296 (523)
T ss_dssp CCEEEECSSHHHH-----HHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHH--TTSCSEEEECTTS----------
T ss_pred CcEEEEeCCHHHH-----HHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHH--cCCCeEEEEechh----------
Confidence 4679999999999 6666666 667 88999999999998888888776 4678999999422
Q ss_pred HHHHhhCCccEEEE
Q psy7952 185 QHLVRYNKLAYIVV 198 (444)
Q Consensus 185 ~~~~~~~~~~~iVi 198 (444)
..-.+..++++||.
T Consensus 297 ~~GiD~p~v~~VI~ 310 (523)
T 1oyw_A 297 GMGINKPNVRFVVH 310 (523)
T ss_dssp CTTTCCTTCCEEEE
T ss_pred hCCCCccCccEEEE
Confidence 12234567888874
No 236
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=68.04 E-value=1.7 Score=39.53 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=14.1
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
.-++|.+|||+|||..|
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34788999999999773
No 237
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=67.78 E-value=1.9 Score=36.17 Aligned_cols=18 Identities=22% Similarity=0.039 Sum_probs=15.8
Q ss_pred ccCCcEEEEccCCCccccc
Q psy7952 63 LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~ 81 (444)
.+ +.+++.+|+|+|||..
T Consensus 24 ~~-~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AM-VRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CC-CEEEEECCTTSCHHHH
T ss_pred CC-CEEEEEcCCCCCHHHH
Confidence 34 7899999999999977
No 238
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=67.71 E-value=2.1 Score=39.49 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=16.3
Q ss_pred HccCCcEEEEccCCCccccc
Q psy7952 62 LLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 62 ~~~~~~~ii~apTGsGKT~~ 81 (444)
..| ..+.+.+|||+|||..
T Consensus 169 ~~g-~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIG-KNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHT-CCEEEEESTTSCHHHH
T ss_pred cCC-CEEEEECCCCCCHHHH
Confidence 346 8899999999999966
No 239
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=67.55 E-value=2.6 Score=38.94 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=20.5
Q ss_pred HHHHHHH--------HHHccCCc--EEEEccCCCccccc
Q psy7952 53 LQKKAIR--------HILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~--------~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
-|.+++. .+++| .+ ++..++||+|||.+
T Consensus 74 sQ~~Vy~~~~~plv~~~l~G-~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 74 SQDEMYQALILPLVDKLLEG-FQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp CHHHHHHHHTHHHHHHHHHT-CCEEEEEESSTTSSHHHH
T ss_pred CHHHHHHhhccchhhHhhCC-CceEEEEecCCCCCCCeE
Confidence 5666554 44566 44 68899999999998
No 240
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=67.30 E-value=1.7 Score=39.91 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.+|+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5799999999999977
No 241
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=67.22 E-value=1.7 Score=35.62 Aligned_cols=16 Identities=13% Similarity=-0.176 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+++.+++|+|||.+
T Consensus 4 ~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGI 19 (178)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5689999999999977
No 242
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=67.21 E-value=0.91 Score=40.27 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 45 ~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLL 60 (268)
T ss_dssp SCCCCBCSSCSSHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 5799999999999977
No 243
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=67.19 E-value=7.7 Score=36.28 Aligned_cols=73 Identities=7% Similarity=0.083 Sum_probs=54.0
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+....++......++ .+..+|+|+|. .+
T Consensus 259 ~~~lVf~~~~~~~-----~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~--~g~~~vLv~T~-~~--------- 318 (400)
T 1s2m_A 259 NQAIIFCNSTNRV-----ELLAKKITDLG---YSCYYSHARMKQQERNKVFHEFR--QGKVRTLVCSD-LL--------- 318 (400)
T ss_dssp SEEEEECSSHHHH-----HHHHHHHHHHT---CCEEEECTTSCHHHHHHHHHHHH--TTSSSEEEESS-CS---------
T ss_pred CcEEEEEecHHHH-----HHHHHHHHhcC---CCeEEecCCCCHHHHHHHHHHHh--cCCCcEEEEcC-cc---------
Confidence 4789999999988 5555666 567 78999999999988888888776 46788999993 22
Q ss_pred HHHHhhCCccEEEE
Q psy7952 185 QHLVRYNKLAYIVV 198 (444)
Q Consensus 185 ~~~~~~~~~~~iVi 198 (444)
..-.++..+++||.
T Consensus 319 ~~Gidip~~~~Vi~ 332 (400)
T 1s2m_A 319 TRGIDIQAVNVVIN 332 (400)
T ss_dssp SSSCCCTTEEEEEE
T ss_pred ccCCCccCCCEEEE
Confidence 12234456677764
No 244
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=67.07 E-value=1.9 Score=39.24 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.8
Q ss_pred cEEEEccCCCcccccc
Q psy7952 67 DIFVSMPTGAVSLVGS 82 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a 82 (444)
-++|.+|||+|||..|
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999774
No 245
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=67.06 E-value=3 Score=38.68 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=25.4
Q ss_pred HHhCCcc-c-CchHHHHHHH--------HHHccC-CcEEEEccCCCccccc
Q psy7952 42 ALFGFDS-F-KCELQKKAIR--------HILLRT-HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 42 ~~~g~~~-~-~t~~Q~~~~~--------~~~~~~-~~~ii~apTGsGKT~~ 81 (444)
+.|.|+. | +..-|.+++. .+++|. --++..++||+|||.+
T Consensus 56 ~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 56 RTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred eEeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEE
Confidence 3455552 1 2335666654 455662 2368899999999988
No 246
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=67.04 E-value=7.7 Score=36.45 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=54.6
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+....++......++. +..+|+|+|.-.
T Consensus 277 ~~~lVf~~~~~~~-----~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~---------- 336 (410)
T 2j0s_A 277 TQAVIFCNTKRKV-----DWLTEKMREAN---FTVSSMHGDMPQKERESIMKEFRS--GASRVLISTDVW---------- 336 (410)
T ss_dssp SEEEEECSSHHHH-----HHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHH--TSSCEEEECGGG----------
T ss_pred CcEEEEEcCHHHH-----HHHHHHHHhCC---CceEEeeCCCCHHHHHHHHHHHHC--CCCCEEEECChh----------
Confidence 3789999999998 5666666 667 889999999999888888887763 678899999321
Q ss_pred HHHHhhCCccEEEE
Q psy7952 185 QHLVRYNKLAYIVV 198 (444)
Q Consensus 185 ~~~~~~~~~~~iVi 198 (444)
..-.++..+++||.
T Consensus 337 ~~Gidi~~v~~Vi~ 350 (410)
T 2j0s_A 337 ARGLDVPQVSLIIN 350 (410)
T ss_dssp SSSCCCTTEEEEEE
T ss_pred hCcCCcccCCEEEE
Confidence 22334556777775
No 247
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=67.01 E-value=3 Score=38.93 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=21.0
Q ss_pred hHHHHHHH--------HHHccCCc--EEEEccCCCccccc
Q psy7952 52 ELQKKAIR--------HILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~--------~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
.-|.+++. .+++| .+ ++..++||+|||.+
T Consensus 63 ~~Q~~Vy~~~~~plv~~~l~G-~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 63 ASQEKVYNEAAKSIVTDVLAG-YNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp CCHHHHHHHHTHHHHHHHHTT-CCEEEEEECSTTSSHHHH
T ss_pred CCHHHHHHHhhhhHHHHHhCC-CceEEEeecCCCCCCceE
Confidence 35666554 44566 44 68899999999988
No 248
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=66.99 E-value=8.4 Score=38.56 Aligned_cols=73 Identities=4% Similarity=-0.038 Sum_probs=56.1
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||.|+++.-+ .+..+.+ ..+ +.+..+++++...++......+. .+..+|+|+|.--
T Consensus 268 ~~~IVf~~sr~~~-----e~la~~L~~~g---~~~~~~h~~l~~~~R~~~~~~F~--~g~~~VlVAT~a~---------- 327 (591)
T 2v1x_A 268 QSGIIYCFSQKDS-----EQVTVSLQNLG---IHAGAYHANLEPEDKTTVHRKWS--ANEIQVVVATVAF---------- 327 (591)
T ss_dssp CEEEEECSSHHHH-----HHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHH--TTSSSEEEECTTS----------
T ss_pred CCeEEEeCcHHHH-----HHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHH--cCCCeEEEEechh----------
Confidence 4679999999999 6666666 677 88999999999999988888776 4788999999322
Q ss_pred HHHHhhCCccEEEE
Q psy7952 185 QHLVRYNKLAYIVV 198 (444)
Q Consensus 185 ~~~~~~~~~~~iVi 198 (444)
..-.+..++++||.
T Consensus 328 ~~GID~p~V~~VI~ 341 (591)
T 2v1x_A 328 GMGIDKPDVRFVIH 341 (591)
T ss_dssp CTTCCCSCEEEEEE
T ss_pred hcCCCcccccEEEE
Confidence 12234557788773
No 249
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=66.77 E-value=2.9 Score=39.05 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=20.6
Q ss_pred HHHHHHH--------HHHccCCc--EEEEccCCCccccc
Q psy7952 53 LQKKAIR--------HILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~--------~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
-|.+++. .+++| .+ ++..++||+|||.+
T Consensus 81 ~Q~~Vy~~~~~plv~~~l~G-~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 81 KQFELYDETFRPLVDSVLQG-FNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp CHHHHHHHTHHHHHHHHHTT-CCEEEEEEESTTSSHHHH
T ss_pred chHHHHHHHHHHHHHHHhCC-CeeeEEeecCCCCCCCEe
Confidence 4666554 45566 44 68899999999988
No 250
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=66.53 E-value=3.1 Score=38.22 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=18.9
Q ss_pred HHHHHHccCCc--EEEEccCCCccccc
Q psy7952 57 AIRHILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
.+..+++| .+ ++..++||+|||.+
T Consensus 72 lv~~~l~G-~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 72 LVTSCIDG-FNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHTT-CCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCC-CEEEEEeECCCCCCCcEE
Confidence 44566777 44 68899999999988
No 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=66.48 E-value=2.2 Score=36.01 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=15.4
Q ss_pred ccCCcEEEEccCCCccccc
Q psy7952 63 LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~ 81 (444)
.| +-+++.+|+|+|||..
T Consensus 18 ~g-~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GR-KTLVLIGASGVGRSHI 35 (197)
T ss_dssp SC-CEEEEECCTTSSHHHH
T ss_pred CC-CEEEEECcCCCCHHHH
Confidence 34 6789999999999976
No 252
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=66.40 E-value=5.6 Score=44.85 Aligned_cols=28 Identities=7% Similarity=-0.079 Sum_probs=21.2
Q ss_pred HHHHHHHc-c----CCcEEEEccCCCccccccc
Q psy7952 56 KAIRHILL-R----THDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 56 ~~~~~~~~-~----~~~~ii~apTGsGKT~~a~ 83 (444)
..++.++. | .+-++|.+|+|+|||..|+
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaL 401 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 401 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHH
Confidence 35777775 2 2668999999999997743
No 253
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=66.33 E-value=3.1 Score=38.47 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=20.5
Q ss_pred HHHHHHH--------HHHccCCc--EEEEccCCCccccc
Q psy7952 53 LQKKAIR--------HILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~--------~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
-|.+++. .+++| .+ ++..++||+|||.+
T Consensus 63 ~Q~~vy~~~~~plv~~~l~G-~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 63 GQEAVYQACVQPLLEAFFEG-FNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp CHHHHHHHHTHHHHHHHHTT-CCEEEEEESSTTSSHHHH
T ss_pred chhHHHHHHHHHHHHHHHhh-cCeeEEEecccCCCceEe
Confidence 4666554 44566 44 68899999999988
No 254
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=66.26 E-value=2.9 Score=38.83 Aligned_cols=29 Identities=24% Similarity=0.126 Sum_probs=20.7
Q ss_pred HHHHHHH--------HHHccC-CcEEEEccCCCccccc
Q psy7952 53 LQKKAIR--------HILLRT-HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~--------~~~~~~-~~~ii~apTGsGKT~~ 81 (444)
-|.+++. .+++|. --++..++||+|||.+
T Consensus 60 ~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 60 KQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp CHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceE
Confidence 4666554 455662 2368899999999988
No 255
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=66.20 E-value=2.1 Score=37.57 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 50 ~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4599999999999976
No 256
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=65.99 E-value=3.1 Score=38.54 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=17.2
Q ss_pred HHHHccC-CcEEEEccCCCccccc
Q psy7952 59 RHILLRT-HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 59 ~~~~~~~-~~~ii~apTGsGKT~~ 81 (444)
..+++|. --++..++||+|||.+
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeE
Confidence 3455662 2368899999999988
No 257
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=65.90 E-value=3.1 Score=38.66 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=17.4
Q ss_pred HHHHHccCCc--EEEEccCCCccccc
Q psy7952 58 IRHILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 58 ~~~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
++.+++| .+ ++..++||+|||.+
T Consensus 96 v~~~l~G-~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 96 VSQALDG-YNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHTT-CCEEEEEEESTTSSHHHH
T ss_pred HHHHhCC-CceEEEEECCCCCCCceE
Confidence 3344566 44 68889999999988
No 258
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=65.84 E-value=3 Score=38.75 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=17.1
Q ss_pred HHHHccCCc--EEEEccCCCccccc
Q psy7952 59 RHILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 59 ~~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
..+++| .+ ++..++||+|||.+
T Consensus 99 ~~~l~G-~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 99 RSFLNG-YNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHTTT-CCEEEEEECCTTSSHHHH
T ss_pred HHHhCC-CceEEEEeCCCCCCceee
Confidence 345566 44 68899999999988
No 259
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=65.57 E-value=3.3 Score=38.68 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=17.6
Q ss_pred HHHHHccCCc--EEEEccCCCccccc
Q psy7952 58 IRHILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 58 ~~~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
+..+++| .+ ++..++||+|||.+
T Consensus 82 v~~~l~G-~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 82 LQHAFEG-YNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHTT-CCEEEEEECSTTSSHHHH
T ss_pred HHHHhcC-CeeEEEEeCCCCCCCceE
Confidence 3445567 44 68899999999988
No 260
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=65.46 E-value=1.9 Score=39.33 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+|+|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6899999999999977
No 261
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=65.44 E-value=1.8 Score=39.20 Aligned_cols=16 Identities=19% Similarity=0.056 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+|+|+|||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3699999999999977
No 262
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=65.44 E-value=3.2 Score=38.53 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=17.9
Q ss_pred HHHHHccCCc--EEEEccCCCccccc
Q psy7952 58 IRHILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 58 ~~~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
++.+++| .+ ++..++||+|||.+
T Consensus 85 v~~~l~G-~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 85 LQNAFDG-YNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHTT-CCEEEEEEECTTSSHHHH
T ss_pred HHHHhCC-ceeEEEeeCCCCCCCceE
Confidence 4455667 44 68889999999988
No 263
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=65.42 E-value=2.5 Score=36.25 Aligned_cols=19 Identities=11% Similarity=-0.083 Sum_probs=15.8
Q ss_pred HccCCcEEEEccCCCccccc
Q psy7952 62 LLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 62 ~~~~~~~ii~apTGsGKT~~ 81 (444)
..| +-+.+.+|+|+|||..
T Consensus 21 ~~G-~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNI-YPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CC-CCEEEECSTTSSHHHH
T ss_pred CCC-CEEEEECCCCCCHHHH
Confidence 346 7899999999999976
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=65.37 E-value=1.5 Score=36.47 Aligned_cols=18 Identities=11% Similarity=-0.104 Sum_probs=15.4
Q ss_pred ccCCcEEEEccCCCccccc
Q psy7952 63 LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~ 81 (444)
.| ..+++.+|+|+|||..
T Consensus 8 ~g-~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GG-NILLLSGHPGSGKSTI 25 (191)
T ss_dssp TT-EEEEEEECTTSCHHHH
T ss_pred CC-eEEEEECCCCCCHHHH
Confidence 45 6789999999999977
No 265
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.22 E-value=2.1 Score=37.66 Aligned_cols=16 Identities=13% Similarity=-0.145 Sum_probs=13.7
Q ss_pred cEEEEccCCCcccccc
Q psy7952 67 DIFVSMPTGAVSLVGS 82 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a 82 (444)
-+++.+|||||||..|
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4689999999999774
No 266
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=65.12 E-value=13 Score=40.49 Aligned_cols=68 Identities=10% Similarity=0.190 Sum_probs=54.9
Q ss_pred CCceEEEEecccchHHHHHHHHHhh--------------cCHHHHHHHHHHHhcCCccEEEEcCc-cccccccCCccEEE
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK--------------VNKHERSRVQESFMRGEINVITATIS-FGMGIDRQNVRFVV 363 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~--------------~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gidi~~~~~Vi 363 (444)
.+.+++|.+++..-+.+.++.+.+. .+..++...++.+..|...|+|+|.. +...+.+.++++||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4679999999999999999888765 35677888889999999999999964 45557788888877
Q ss_pred EeC
Q psy7952 364 HWG 366 (444)
Q Consensus 364 ~~~ 366 (444)
...
T Consensus 731 iDE 733 (1151)
T 2eyq_A 731 VDE 733 (1151)
T ss_dssp EES
T ss_pred Eec
Confidence 443
No 267
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=65.12 E-value=2.3 Score=35.88 Aligned_cols=16 Identities=6% Similarity=0.077 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+++.+|||+|||..
T Consensus 35 ~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 35 LGVLITGDSGVGKSET 50 (205)
T ss_dssp EEEEEECCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 5689999999999866
No 268
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=65.00 E-value=3.1 Score=38.70 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=17.1
Q ss_pred HHHHccCCc--EEEEccCCCccccc
Q psy7952 59 RHILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 59 ~~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
..+++| .+ ++..++||+|||.+
T Consensus 82 ~~~l~G-~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 82 DEVIMG-YNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHTT-CEEEEEEEECTTSSHHHH
T ss_pred HHHhCC-CceEEEEeCCCCCCCceE
Confidence 344566 44 68899999999988
No 269
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=64.99 E-value=2.1 Score=35.40 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|+|||.+
T Consensus 11 ~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 11 INILITGTPGTGKTSM 26 (184)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6799999999999977
No 270
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.95 E-value=3.4 Score=38.02 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=24.4
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEec
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTA 236 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSA 236 (444)
....++++||+|.+... ....+.+.+...+...++++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~------~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD------AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH------HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH------HHHHHHHHHHhcCCCceEEEEeC
Confidence 35679999999997532 12444555555555455666553
No 271
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=64.95 E-value=3.1 Score=39.37 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=17.2
Q ss_pred HHHHccC-CcEEEEccCCCccccc
Q psy7952 59 RHILLRT-HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 59 ~~~~~~~-~~~ii~apTGsGKT~~ 81 (444)
..+++|. --++..+.||||||.+
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeE
Confidence 3455662 2368899999999988
No 272
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=64.63 E-value=3.5 Score=40.04 Aligned_cols=16 Identities=6% Similarity=-0.105 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.+|+|+|||.+
T Consensus 202 ~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAI 217 (468)
T ss_dssp CEEEEESCTTTTTHHH
T ss_pred CCeEEECCCCCCHHHH
Confidence 6899999999999977
No 273
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.35 E-value=3.2 Score=39.36 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=18.6
Q ss_pred HHHHHHccCCc--EEEEccCCCccccc
Q psy7952 57 AIRHILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
.+..+++| .+ ++..++||||||.+
T Consensus 132 lv~~~l~G-~N~tifAYGqTGSGKTyT 157 (403)
T 4etp_A 132 LVQSSLDG-YNVAIFAYGQTGSGKTFT 157 (403)
T ss_dssp HHHHHHTT-CCEEEEEESCTTSSHHHH
T ss_pred HHHHHhCC-cceEEEEECCCCCCCceE
Confidence 34556677 44 68899999999998
No 274
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=64.31 E-value=2.3 Score=35.77 Aligned_cols=19 Identities=21% Similarity=0.008 Sum_probs=15.8
Q ss_pred ccCCcEEEEccCCCcccccc
Q psy7952 63 LRTHDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~a 82 (444)
.| .-+.+.+|+|||||..+
T Consensus 5 ~g-~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KG-LLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CC-CEEEEECSTTSCHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHH
Confidence 34 67899999999999773
No 275
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=64.23 E-value=2.3 Score=34.70 Aligned_cols=15 Identities=13% Similarity=-0.168 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+++.+++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478999999999977
No 276
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=63.97 E-value=3.3 Score=38.72 Aligned_cols=29 Identities=17% Similarity=0.054 Sum_probs=20.5
Q ss_pred HHHHHHH--------HHHccC-CcEEEEccCCCccccc
Q psy7952 53 LQKKAIR--------HILLRT-HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~--------~~~~~~-~~~ii~apTGsGKT~~ 81 (444)
-|.+++. .+++|. --++..++||+|||.+
T Consensus 80 ~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 80 KQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred chhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCccee
Confidence 4666554 445562 2378899999999988
No 277
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.89 E-value=3.3 Score=39.35 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=19.3
Q ss_pred HHHHHHccCCc--EEEEccCCCccccc
Q psy7952 57 AIRHILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
.+..+++| .+ ++..++||+|||.+
T Consensus 130 lv~~~l~G-~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 130 LIQSALDG-YNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHTT-CCEEEEEESSTTSSHHHH
T ss_pred HHHHHHCC-CceEEEEecCCCCCCeeE
Confidence 45667777 44 68899999999988
No 278
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=63.75 E-value=3.5 Score=38.70 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=17.2
Q ss_pred HHHHccC-CcEEEEccCCCccccc
Q psy7952 59 RHILLRT-HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 59 ~~~~~~~-~~~ii~apTGsGKT~~ 81 (444)
..+++|. --++..++||+|||.+
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHH
T ss_pred HHHhcCCceEEEEecCCCCCCCeE
Confidence 3455662 2378899999999988
No 279
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=63.72 E-value=2.6 Score=35.36 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|+|+|||..
T Consensus 8 ~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSL 23 (205)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECcCCCCHHHH
Confidence 6688999999999977
No 280
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=63.67 E-value=3.1 Score=38.90 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=18.1
Q ss_pred HHHHHccCCc--EEEEccCCCccccc
Q psy7952 58 IRHILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 58 ~~~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
+..+++| .+ ++..++||+|||.+
T Consensus 72 v~~~l~G-~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 72 VQSAVDG-YNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHTT-CEEEEEEEECTTSSHHHH
T ss_pred hHhhhcC-CceEEEEECCCCCCCeEe
Confidence 4556677 44 68899999999988
No 281
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=63.30 E-value=2.8 Score=34.75 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+.+|+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5678999999999977
No 282
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=63.05 E-value=13 Score=31.88 Aligned_cols=68 Identities=7% Similarity=0.113 Sum_probs=40.8
Q ss_pred CCceEEEEecccchHHHHHHHHHhh-----------cCHHHHHHHHHHHhcCCccEEEEcC-----ccccc-cccCCccE
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK-----------VNKHERSRVQESFMRGEINVITATI-----SFGMG-IDRQNVRF 361 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~-----------~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-idi~~~~~ 361 (444)
.+.+++|.+++++-+.++++.+.+. ..........+.+..+...|+|+|. .+..+ ++...+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 4568999999999999998888765 2223333444455567789999994 33333 56677888
Q ss_pred EEEeC
Q psy7952 362 VVHWG 366 (444)
Q Consensus 362 Vi~~~ 366 (444)
||...
T Consensus 177 lViDE 181 (237)
T 3bor_A 177 FVLDE 181 (237)
T ss_dssp EEEES
T ss_pred EEECC
Confidence 77554
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=63.03 E-value=2.9 Score=33.98 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+.+.+|+|||||..
T Consensus 5 ~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5789999999999977
No 284
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=63.02 E-value=2.5 Score=34.17 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+|+|+|||.+
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999977
No 285
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=63.00 E-value=12 Score=35.77 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=53.3
Q ss_pred ccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeC--------CCChhhHHHHHHHHHhcCCCeeEEEECCCc
Q psy7952 104 VRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVS--------GQTKTENKAILEELRLVKPRIKLLYVTPER 174 (444)
Q Consensus 104 ~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~ 174 (444)
...++||+++++.-+ ....+.+ ..+ +.+..++| +.+..++.......+. +...|+|+| +.
T Consensus 360 ~~~k~lVF~~~~~~~-----~~l~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~--~~~~vLv~T-~~ 428 (494)
T 1wp9_A 360 QNSKIIVFTNYRETA-----KKIVNELVKDG---IKAKRFVGQASKENDRGLSQREQKLILDEFAR--GEFNVLVAT-SV 428 (494)
T ss_dssp TTCCEEEECSCHHHH-----HHHHHHHHHTT---CCEEEECCSSCC-------CCHHHHHHHHHHH--TSCSEEEEC-GG
T ss_pred CCCeEEEEEccHHHH-----HHHHHHHHHcC---CCcEEEeccccccccccCCHHHHHHHHHHHhc--CCceEEEEC-Cc
Confidence 345779999999988 5555555 556 88999999 7777778777777764 668899999 22
Q ss_pred cccccHHHHHHHHHhhCCccEEEEecc
Q psy7952 175 AVTESFHYLLQHLVRYNKLAYIVVDEA 201 (444)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~iViDE~ 201 (444)
...-.++..+++||+-+.
T Consensus 429 ---------~~~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 429 ---------GEEGLDVPEVDLVVFYEP 446 (494)
T ss_dssp ---------GGGGGGSTTCCEEEESSC
T ss_pred ---------cccCCCchhCCEEEEeCC
Confidence 223445667788885443
No 286
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.83 E-value=4.3 Score=37.85 Aligned_cols=16 Identities=13% Similarity=-0.126 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 46 ~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5699999999999977
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=62.69 E-value=2.8 Score=34.37 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+++|+|||..
T Consensus 12 ~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 12 PNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEEeCCCCCHHHH
Confidence 6799999999999977
No 288
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=62.55 E-value=2.5 Score=39.38 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+|||||||..
T Consensus 124 g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTT 139 (356)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5789999999999976
No 289
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=62.51 E-value=3.1 Score=38.58 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=17.5
Q ss_pred HHHHHccCCc--EEEEccCCCccccc
Q psy7952 58 IRHILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 58 ~~~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
+..+++| .+ ++..++||+|||.+
T Consensus 78 v~~~l~G-~n~tifAYGqTGSGKTyT 102 (349)
T 3t0q_A 78 VQSSLDG-YNVCIFAYGQTGSGKTYT 102 (349)
T ss_dssp HHGGGTT-CEEEEEEECSTTSSHHHH
T ss_pred HHHHHCC-cceeEEEeCCCCCCCceE
Confidence 3445566 44 68899999999998
No 290
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=62.39 E-value=2.7 Score=37.53 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 45 ~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLL 60 (274)
T ss_dssp SEEEEESSTTSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 4599999999999977
No 291
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=62.38 E-value=2.8 Score=35.96 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=15.9
Q ss_pred HHHccCCcEEEEccCCCccccc
Q psy7952 60 HILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 60 ~~~~~~~~~ii~apTGsGKT~~ 81 (444)
++..| +-+.+.+|.|+|||..
T Consensus 12 ~~~~G-~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 12 HMAQG-TLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ---CC-CEEEEECCTTSCHHHH
T ss_pred cCCCC-cEEEEECCCCCCHHHH
Confidence 34456 7789999999999976
No 292
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=62.38 E-value=4 Score=39.13 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=20.7
Q ss_pred HHHHHHH--------HHHccCCc--EEEEccCCCccccc
Q psy7952 53 LQKKAIR--------HILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~--------~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
-|.+++. .+++| .+ ++..+.||+|||.+
T Consensus 116 sQ~~Vy~~~~~plv~~~l~G-yN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 116 TQEHVYDSLGEEFLDHNFEG-YHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CCEEEEEESSTTSSHHHH
T ss_pred CHHHHHHhhhhhHHHHhhcC-CceEEEEeCCCCCCCCEE
Confidence 4666554 44566 44 68899999999988
No 293
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=62.11 E-value=2.4 Score=34.62 Aligned_cols=16 Identities=6% Similarity=-0.110 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|+|+|||..
T Consensus 10 ei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTF 25 (171)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 5688999999999977
No 294
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=61.99 E-value=2.9 Score=35.33 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=16.1
Q ss_pred HHHccCCcEEEEccCCCccccc
Q psy7952 60 HILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 60 ~~~~~~~~~ii~apTGsGKT~~ 81 (444)
.+..| +-+.+.+|+|+|||..
T Consensus 16 ~i~~G-ei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVG-RVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CC-CEEEEECSTTSSHHHH
T ss_pred CCCCC-CEEEEECCCCCCHHHH
Confidence 56667 7789999999999976
No 295
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=61.97 E-value=2.6 Score=38.54 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=14.6
Q ss_pred cEEEEccCCCccccccc
Q psy7952 67 DIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~ 83 (444)
.++|.+|||+|||..|.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998743
No 296
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=61.66 E-value=28 Score=33.04 Aligned_cols=15 Identities=13% Similarity=-0.035 Sum_probs=12.9
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+.+.+++|+|||..
T Consensus 100 vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTT 114 (425)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999977
No 297
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=61.56 E-value=2.9 Score=38.50 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5799999999999977
No 298
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=61.33 E-value=3.6 Score=48.64 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=21.2
Q ss_pred HHHHHHHccCCcEEEEccCCCcccccc
Q psy7952 56 KAIRHILLRTHDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 56 ~~~~~~~~~~~~~ii~apTGsGKT~~a 82 (444)
..+..++.+.++++++||||+|||..|
T Consensus 1258 ~ll~~~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1258 KIFYDLLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHHHTCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCCHHHHH
Confidence 345555555599999999999999774
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=60.99 E-value=2.7 Score=34.07 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=15.2
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
+++++.+++|||||.+|
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 67999999999999873
No 300
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=60.87 E-value=3.3 Score=38.95 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=21.9
Q ss_pred hHHHHHHH--------HHHccCCc--EEEEccCCCccccc
Q psy7952 52 ELQKKAIR--------HILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~--------~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
.-|.+++. .+++| .+ ++..++||+|||.+
T Consensus 77 ~tQ~~Vy~~~~~plv~~~l~G-~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 77 STQQDIYAGSVQPILRHLLEG-QNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp CCHHHHHHHHTGGGHHHHTTT-CCEEEEEESCTTSSHHHH
T ss_pred CCHhHHHHHHHHHHHHHhhcC-ceeeEeeecCCCCCCCeE
Confidence 45777765 34556 44 68899999999988
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=60.79 E-value=1.5 Score=37.92 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=12.4
Q ss_pred HHccCCcEEEEccCCCccccc
Q psy7952 61 ILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 61 ~~~~~~~~ii~apTGsGKT~~ 81 (444)
+..| .-+.+.+|+|+|||..
T Consensus 24 v~~G-~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVG-VILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECC-CEEEEECSCC----CH
T ss_pred cCCC-CEEEEECCCCCCHHHH
Confidence 3345 6789999999999977
No 302
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=60.50 E-value=1.8 Score=42.08 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=0.0
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.+++|+||++.-+ ....+.+ ..+ ..+..++|+.....+...+..++ .+..+|+|+|. . .
T Consensus 334 ~~~lvF~~s~~~~-----~~l~~~L~~~~---~~v~~lh~~~~~~~R~~~~~~f~--~g~~~iLv~T~-~---------~ 393 (479)
T 3fmp_B 334 AQAMIFCHTRKTA-----SWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFR--EGKEKVLVTTN-V---------C 393 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEeCcHHHH-----HHHHHHHHhCC---ccEEEecCCCCHHHHHHHHHHHH--cCCCcEEEEcc-c---------c
Confidence 4679999999988 5555555 556 78899999998888877777665 46788999992 1 2
Q ss_pred HHHHhhCCccEEE
Q psy7952 185 QHLVRYNKLAYIV 197 (444)
Q Consensus 185 ~~~~~~~~~~~iV 197 (444)
..-.++.++++||
T Consensus 394 ~~GlDip~v~~VI 406 (479)
T 3fmp_B 394 ARGIDVEQVSVVI 406 (479)
T ss_dssp -------------
T ss_pred ccCCccccCCEEE
Confidence 3344566677776
No 303
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=60.31 E-value=3.1 Score=37.04 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 4599999999999976
No 304
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=60.27 E-value=3.3 Score=38.33 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=20.1
Q ss_pred HHHHHHHH-------HHccCCc--EEEEccCCCccccc
Q psy7952 53 LQKKAIRH-------ILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~~-------~~~~~~~--~ii~apTGsGKT~~ 81 (444)
-|.+++.. +++| .+ ++..++||+|||.+
T Consensus 65 ~Q~~Vy~~v~~lv~~~l~G-~n~tifAYGqTGSGKTyT 101 (347)
T 1f9v_A 65 TNVDVFKEVGQLVQSSLDG-YNVCIFAYGQTGSGKTFT 101 (347)
T ss_dssp CHHHHHHHHHHHHGGGGGT-CCEEEEEECCTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHhcCC-ceeEEEEECCCCCCCcEe
Confidence 46555543 4456 44 68899999999998
No 305
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=59.50 E-value=2.8 Score=39.35 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+|||+|||..
T Consensus 137 ~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTT 152 (372)
T ss_dssp EEEEEECSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6789999999999976
No 306
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=59.32 E-value=3.3 Score=34.17 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+.+.+|.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999976
No 307
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.18 E-value=6 Score=36.32 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=24.2
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
..+++|+||+|.+... ....+.+.+...+.+..+++.+
T Consensus 110 ~~~viiiDe~~~l~~~------~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 110 GFKLIILDEADAMTNA------AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp SCEEEEETTGGGSCHH------HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEeCCCCCCHH------HHHHHHHHHhcCCCCeEEEEEe
Confidence 4689999999997532 2344555565555555565544
No 308
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=59.10 E-value=3.1 Score=40.80 Aligned_cols=75 Identities=9% Similarity=0.138 Sum_probs=48.0
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ......+ ..+ ..+..++++....++....+.++ .+..+|+|+|. ..
T Consensus 358 ~~~LVF~~s~~~a-----~~l~~~L~~~~---~~v~~~hg~~~~~~R~~il~~f~--~g~~~VLVaT~----------~l 417 (508)
T 3fho_A 358 GQSIIFCKKKDTA-----EEIARRMTADG---HTVACLTGNLEGAQRDAIMDSFR--VGTSKVLVTTN----------VI 417 (508)
T ss_dssp CCEEEBCSSTTTT-----THHHHHHTTTT---CCCCEEC-----CTTGGGTHHHH--SSSCCCCEECC------------
T ss_pred CcEEEEECCHHHH-----HHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHH--CCCCeEEEeCC----------hh
Confidence 4679999999998 5666666 556 78889999888777776666665 47789999993 13
Q ss_pred HHHHhhCCccEEEEec
Q psy7952 185 QHLVRYNKLAYIVVDE 200 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE 200 (444)
..-.++..+++||...
T Consensus 418 ~~GiDip~v~~VI~~~ 433 (508)
T 3fho_A 418 ARGIDVSQVNLVVNYD 433 (508)
T ss_dssp ---CCCTTCCEEEC--
T ss_pred hcCCCccCCCEEEEEC
Confidence 3445667788888543
No 309
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=59.02 E-value=3.2 Score=38.28 Aligned_cols=17 Identities=24% Similarity=0.098 Sum_probs=14.5
Q ss_pred cEEEEccCCCccccccc
Q psy7952 67 DIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~ 83 (444)
-++|.+|||+|||..|.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 57899999999997743
No 310
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=58.68 E-value=19 Score=32.37 Aligned_cols=73 Identities=4% Similarity=-0.008 Sum_probs=52.4
Q ss_pred cceeEEEcchhhhhcccCccchHhhhcCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 105 RSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 105 ~~~vlil~P~~~L~~~~q~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
..++||+++++.-+ ....+.+. .+..++|+....++......++ .+..+|+|+| . ..
T Consensus 220 ~~~~lvf~~~~~~~-----~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~--~~~~~vlv~T---------~-~~ 276 (337)
T 2z0m_A 220 DKGVIVFVRTRNRV-----AKLVRLFD------NAIELRGDLPQSVRNRNIDAFR--EGEYDMLITT---------D-VA 276 (337)
T ss_dssp CSSEEEECSCHHHH-----HHHHTTCT------TEEEECTTSCHHHHHHHHHHHH--TTSCSEEEEC---------H-HH
T ss_pred CCcEEEEEcCHHHH-----HHHHHHhh------hhhhhcCCCCHHHHHHHHHHHH--cCCCcEEEEc---------C-cc
Confidence 34679999999888 44444332 4678899999988888888776 4678999999 2 23
Q ss_pred HHHHhhCCccEEEEec
Q psy7952 185 QHLVRYNKLAYIVVDE 200 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE 200 (444)
..-.++..+++||.-.
T Consensus 277 ~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 277 SRGLDIPLVEKVINFD 292 (337)
T ss_dssp HTTCCCCCBSEEEESS
T ss_pred ccCCCccCCCEEEEec
Confidence 4445667788888633
No 311
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=58.44 E-value=3.8 Score=38.36 Aligned_cols=38 Identities=26% Similarity=0.232 Sum_probs=24.4
Q ss_pred HhCCcc-c-CchHHHHHHH-------HHHccCCc--EEEEccCCCccccc
Q psy7952 43 LFGFDS-F-KCELQKKAIR-------HILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 43 ~~g~~~-~-~t~~Q~~~~~-------~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
.|.|+. | +..-|.+++. .+++| .+ ++..++||+|||.+
T Consensus 84 ~F~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G-~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 84 DFSFDRVFPPGSGQDEVFEEIAMLVQSALDG-YPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp EEECSEEECTTCCHHHHHHHHHHHHHGGGGT-CCEEEEEECSTTSSHHHH
T ss_pred eeeecEEcCCcccchhhhhhHHHHHHHhcCC-CceEEEEeCCCCCCCceE
Confidence 355553 1 2335666654 34456 44 68899999999988
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=58.32 E-value=3.4 Score=34.06 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|+|||..
T Consensus 4 ~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5689999999999977
No 313
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=58.18 E-value=15 Score=37.36 Aligned_cols=79 Identities=10% Similarity=0.065 Sum_probs=59.8
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+|+.-+ ....+.+ ..+ +.+..++++....++...+..++ .+..+|+|+| +.+
T Consensus 440 ~~vlVf~~t~~~a-----e~L~~~L~~~g---i~~~~lh~~~~~~~R~~~~~~f~--~g~~~VLvaT-~~l--------- 499 (664)
T 1c4o_A 440 ERTLVTVLTVRMA-----EELTSFLVEHG---IRARYLHHELDAFKRQALIRDLR--LGHYDCLVGI-NLL--------- 499 (664)
T ss_dssp CEEEEECSSHHHH-----HHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHH--TTSCSEEEES-CCC---------
T ss_pred CEEEEEECCHHHH-----HHHHHHHHhcC---CCceeecCCCCHHHHHHHHHHhh--cCCceEEEcc-Chh---------
Confidence 4779999999998 5666666 667 88899999999888888887776 4778999999 222
Q ss_pred HHHHhhCCccEEEEeccccc
Q psy7952 185 QHLVRYNKLAYIVVDEAHCV 204 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE~H~~ 204 (444)
..-.++..+++||+=+++..
T Consensus 500 ~~GlDip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKE 519 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSC
T ss_pred hcCccCCCCCEEEEeCCccc
Confidence 22334557888988887664
No 314
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=57.95 E-value=5 Score=36.15 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=13.9
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
++++.||+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999977
No 315
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=57.85 E-value=3.6 Score=36.97 Aligned_cols=16 Identities=6% Similarity=-0.022 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+++.||+|+|||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4589999999999977
No 316
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=57.28 E-value=14 Score=36.75 Aligned_cols=79 Identities=8% Similarity=0.009 Sum_probs=56.4
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ......+.+..++|+....++......++. +..+|+|+|.- .
T Consensus 289 ~~~iVF~~t~~~~-----~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~--g~~~vLVaT~~----------~ 351 (579)
T 3sqw_A 289 YKAIIFAPTVKFT-----SFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVCTDV----------G 351 (579)
T ss_dssp CEEEEECSSHHHH-----HHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEECGG----------G
T ss_pred CcEEEECCcHHHH-----HHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc--CCCeEEEEcch----------h
Confidence 4789999999988 4555555 221112889999999999998888888764 77899999931 1
Q ss_pred HHHHhhCCccEEEEecc
Q psy7952 185 QHLVRYNKLAYIVVDEA 201 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE~ 201 (444)
..-.++..+++||.-..
T Consensus 352 ~~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 352 ARGMDFPNVHEVLQIGV 368 (579)
T ss_dssp TSSCCCTTCCEEEEESC
T ss_pred hcCCCcccCCEEEEcCC
Confidence 23345567888886554
No 317
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=57.27 E-value=3.4 Score=39.64 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=15.3
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
+++++.+|+|+|||..|
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 67999999999999774
No 318
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=57.24 E-value=5.3 Score=41.40 Aligned_cols=18 Identities=6% Similarity=-0.108 Sum_probs=15.9
Q ss_pred CcEEEEccCCCccccccc
Q psy7952 66 HDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a~ 83 (444)
.++++.+|+|+|||.+|-
T Consensus 202 ~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CEEEEESCTTTTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 689999999999998743
No 319
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=57.22 E-value=4 Score=34.24 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+.+.+|+|+|||..
T Consensus 30 ~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6789999999999977
No 320
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=57.06 E-value=25 Score=38.93 Aligned_cols=74 Identities=7% Similarity=-0.020 Sum_probs=36.4
Q ss_pred HhcCCCeeEEEECCCccccccHHHHH-HHHHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEecc
Q psy7952 159 RLVKPRIKLLYVTPERAVTESFHYLL-QHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTAT 237 (444)
Q Consensus 159 ~~~~~~~~Iiv~Tpe~l~~~~~~~~~-~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT 237 (444)
..++++.+-.|+--+.-.+-.-...+ -...-.++-+++|+||+=.-.|.. .. ..+.+.++...+++.+|..+--
T Consensus 1201 ~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~----tE-~~Iq~~l~~~~~~~TvI~IAHR 1275 (1321)
T 4f4c_A 1201 AELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE----SE-KVVQEALDRAREGRTCIVIAHR 1275 (1321)
T ss_dssp HTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSH----HH-HHHHHHHTTTSSSSEEEEECSS
T ss_pred HcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHH----HH-HHHHHHHHHHcCCCEEEEeccC
Confidence 34556677666654433222111111 112234577899999997655532 11 3344444444344556665543
No 321
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=57.03 E-value=3.5 Score=38.98 Aligned_cols=16 Identities=25% Similarity=0.048 Sum_probs=13.7
Q ss_pred cEEEEccCCCcccccc
Q psy7952 67 DIFVSMPTGAVSLVGS 82 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a 82 (444)
-++|.+|||+|||..|
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 4789999999999774
No 322
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=56.95 E-value=14 Score=36.45 Aligned_cols=79 Identities=8% Similarity=0.009 Sum_probs=56.0
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+|+++.-+ ....+.+ ......+.+..++++.....+......++. +..+|+|+|.- .
T Consensus 340 ~~~iVF~~s~~~~-----~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vLvaT~~----------~ 402 (563)
T 3i5x_A 340 YKAIIFAPTVKFT-----SFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVCTDV----------G 402 (563)
T ss_dssp CEEEEECSCHHHH-----HHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEECGG----------G
T ss_pred CcEEEEcCcHHHH-----HHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc--CCCCEEEEcch----------h
Confidence 4789999999988 4555544 221112889999999999999888888764 78899999931 2
Q ss_pred HHHHhhCCccEEEEecc
Q psy7952 185 QHLVRYNKLAYIVVDEA 201 (444)
Q Consensus 185 ~~~~~~~~~~~iViDE~ 201 (444)
..-.++..+++||.-..
T Consensus 403 ~~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 403 ARGMDFPNVHEVLQIGV 419 (563)
T ss_dssp TSSCCCTTCCEEEEESC
T ss_pred hcCCCcccCCEEEEECC
Confidence 23345567888885543
No 323
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=56.65 E-value=2.7 Score=38.06 Aligned_cols=15 Identities=13% Similarity=-0.002 Sum_probs=12.9
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+.+.+++|+|||..
T Consensus 100 vi~i~G~~G~GKTT~ 114 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTT 114 (297)
T ss_dssp EEEEECSSCSSTTHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999976
No 324
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=56.44 E-value=5.2 Score=37.22 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=13.2
Q ss_pred EEEEccCCCccccc
Q psy7952 68 IFVSMPTGAVSLVG 81 (444)
Q Consensus 68 ~ii~apTGsGKT~~ 81 (444)
++..++||||||.+
T Consensus 88 ifAYGqTGSGKTyT 101 (360)
T 1ry6_A 88 CFAYGQTGSGKTYT 101 (360)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEeeCCCCCCCCEE
Confidence 69999999999988
No 325
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=56.43 E-value=3.7 Score=33.93 Aligned_cols=16 Identities=13% Similarity=-0.147 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+++.+++|+|||..
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4589999999999977
No 326
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=56.35 E-value=4 Score=32.54 Aligned_cols=15 Identities=7% Similarity=-0.208 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-.+|.+|+|+|||.+
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468999999999966
No 327
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=56.29 E-value=3.7 Score=34.64 Aligned_cols=16 Identities=6% Similarity=0.021 Sum_probs=14.0
Q ss_pred cEEEEccCCCcccccc
Q psy7952 67 DIFVSMPTGAVSLVGS 82 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a 82 (444)
-.++.|++|+|||..|
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4689999999999874
No 328
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=56.27 E-value=3.9 Score=33.82 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=13.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+++.+|+|+|||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3578999999999977
No 329
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.09 E-value=7.4 Score=36.55 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=47.8
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHH
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLL 184 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~ 184 (444)
.++||+++++.-+ ....+.+ ..+ +.+..++|+....++......++ .+..+|+|+|.-.
T Consensus 281 ~~~lvf~~~~~~~-----~~l~~~l~~~~---~~~~~~h~~~~~~~r~~~~~~f~--~g~~~vlv~T~~~---------- 340 (414)
T 3eiq_A 281 TQAVIFINTRRKV-----DWLTEKMHARD---FTVSAMHGDMDQKERDVIMREFR--SGSSRVLITTDLL---------- 340 (414)
T ss_dssp SSCEEECSCHHHH-----HHHHHHHHTTT---CCCEEC---CHHHHHHHHHHHHS--CC---CEEECSSC----------
T ss_pred CcEEEEeCCHHHH-----HHHHHHHHhcC---CeEEEecCCCCHHHHHHHHHHHH--cCCCcEEEECCcc----------
Confidence 4679999999998 6666666 667 88999999999888888887765 4678899999322
Q ss_pred HHHHhhCCccEEEE
Q psy7952 185 QHLVRYNKLAYIVV 198 (444)
Q Consensus 185 ~~~~~~~~~~~iVi 198 (444)
..-.++..+++||.
T Consensus 341 ~~Gidip~v~~Vi~ 354 (414)
T 3eiq_A 341 ARGIDVQQVSLVIN 354 (414)
T ss_dssp C--CCGGGCSCEEE
T ss_pred ccCCCccCCCEEEE
Confidence 12234446677764
No 330
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=55.99 E-value=4.3 Score=33.05 Aligned_cols=16 Identities=13% Similarity=-0.095 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|||||.+
T Consensus 5 ~~i~i~G~~GsGKsTl 20 (175)
T 1via_A 5 KNIVFIGFMGSGKSTL 20 (175)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3689999999999977
No 331
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=55.90 E-value=3.6 Score=33.50 Aligned_cols=16 Identities=13% Similarity=-0.051 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+.+.+|+|+|||..
T Consensus 9 ~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAV 24 (175)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 5689999999999977
No 332
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.38 E-value=9.6 Score=45.80 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCcccCchHHHHHHH--HHHccCCcEEEEccCCCccccc
Q psy7952 34 QELTAKLKALFGFDSFKCELQKKAIR--HILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q~~~~~--~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+.+.+..++ .|+..-+ .+-.++++ .++.-++.++++||||+|||.+
T Consensus 875 ~ai~~~~~~-~~L~~~~-~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~ 922 (3245)
T 3vkg_A 875 KKIQEIAKQ-RHLVTKQ-EWVEKILQLHQILNINHGVMMVGPSGGGKTTS 922 (3245)
T ss_dssp HHHHHHHHH-TTCCCCH-HHHHHHHHHHHHHTTCSEEEEECSSSSSHHHH
T ss_pred HHHHHHHHH-cCCccCH-HHHHHHHHHHHHHHheeeEEEECCCCCCHHHH
Confidence 344444444 3777523 23333332 2222337899999999999987
No 333
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=55.27 E-value=4.1 Score=34.14 Aligned_cols=16 Identities=19% Similarity=-0.008 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.|++|+|||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4699999999999977
No 334
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.20 E-value=5.4 Score=47.83 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=20.8
Q ss_pred HHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 55 KKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 55 ~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
...+..++..+++++++||||+|||..
T Consensus 1294 ~~ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1294 VDVLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCCHHHH
Confidence 345556665558999999999999954
No 335
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=54.98 E-value=4 Score=33.62 Aligned_cols=15 Identities=13% Similarity=-0.225 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+++|+|||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999977
No 336
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=54.93 E-value=4.7 Score=35.37 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCccccc
Q psy7952 64 RTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 64 ~~~~~ii~apTGsGKT~~ 81 (444)
| +.+++.+++|+|||.+
T Consensus 48 g-~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 48 G-RSMYLVGMMGSGKTTV 64 (250)
T ss_dssp T-CCEEEECSTTSCHHHH
T ss_pred C-CEEEEECCCCCCHHHH
Confidence 6 8899999999999977
No 337
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=54.79 E-value=63 Score=31.18 Aligned_cols=93 Identities=5% Similarity=-0.015 Sum_probs=60.7
Q ss_pred eEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHHHHHH
Q psy7952 108 NGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQH 186 (444)
Q Consensus 108 vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~~ 186 (444)
+++++. ..-+ .+..+.+ ..+ .++..++|+....++......+. .+..+|+|+|+.. ...
T Consensus 351 ~ivf~~-~~~~-----~~l~~~L~~~~---~~v~~~~g~~~~~~r~~i~~~f~--~g~~~vLv~T~~~---------~~~ 410 (510)
T 2oca_A 351 FVMFKH-VSHG-----KAIFDLIKNEY---DKVYYVSGEVDTETRNIMKTLAE--NGKGIIIVASYGV---------FST 410 (510)
T ss_dssp EEEESS-HHHH-----HHHHHHHHTTC---SSEEEESSSTTHHHHHHHHHHHH--HCCSCEEEEEHHH---------HHH
T ss_pred EEEEec-HHHH-----HHHHHHHHHcC---CCeEEEECCCCHHHHHHHHHHHh--CCCCCEEEEEcCh---------hhc
Confidence 445555 4444 3444444 445 57899999999888888877776 4678899999555 344
Q ss_pred HHhhCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhC
Q psy7952 187 LVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTG 226 (444)
Q Consensus 187 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~ 226 (444)
-.++.++++||+..... + ....++.+.+.-+..+
T Consensus 411 GiDip~v~~vi~~~~~~----s--~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 411 GISVKNLHHVVLAHGVK----S--KIIVLQTIGRVLRKHG 444 (510)
T ss_dssp SCCCCSEEEEEESSCCC----S--CCHHHHHHHHHHTTTC
T ss_pred ccccccCcEEEEeCCCC----C--HHHHHHHHhcccccCC
Confidence 55677889999877663 2 3344455555544433
No 338
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=54.70 E-value=4.3 Score=33.37 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|||||..
T Consensus 5 ~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5689999999999977
No 339
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=54.53 E-value=4.5 Score=34.10 Aligned_cols=14 Identities=36% Similarity=0.294 Sum_probs=11.9
Q ss_pred CccEEEEecccccc
Q psy7952 192 KLAYIVVDEAHCVS 205 (444)
Q Consensus 192 ~~~~iViDE~H~~~ 205 (444)
.-.+|||||||.+.
T Consensus 87 ~~~vliIDEAq~l~ 100 (199)
T 2r2a_A 87 IGSIVIVDEAQDVW 100 (199)
T ss_dssp TTCEEEETTGGGTS
T ss_pred CceEEEEEChhhhc
Confidence 46799999999984
No 340
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=54.32 E-value=4.3 Score=33.36 Aligned_cols=16 Identities=6% Similarity=-0.170 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999987
No 341
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=54.01 E-value=4.3 Score=34.40 Aligned_cols=15 Identities=20% Similarity=0.034 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+|+|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999977
No 342
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=53.85 E-value=4.5 Score=33.40 Aligned_cols=16 Identities=25% Similarity=0.044 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|||||..
T Consensus 4 ~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999977
No 343
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=53.76 E-value=4.7 Score=34.85 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=15.5
Q ss_pred ccCCcEEEEccCCCccccc
Q psy7952 63 LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~ 81 (444)
.| .-+.+.+|+|+|||..
T Consensus 29 ~G-~~~~l~GpnGsGKSTL 46 (251)
T 2ehv_A 29 EG-TTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TT-CEEEEECCTTSSHHHH
T ss_pred CC-cEEEEEeCCCCCHHHH
Confidence 45 7789999999999976
No 344
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=53.66 E-value=5 Score=32.42 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999977
No 345
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=53.60 E-value=4.4 Score=34.36 Aligned_cols=15 Identities=13% Similarity=0.007 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+|+|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999977
No 346
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.58 E-value=3.9 Score=40.25 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=25.8
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccCC
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAE 239 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~~ 239 (444)
.-.+|||||+|.+..... ..+..+..++.. ...++|+.+++..
T Consensus 148 ~~~vliIDEid~l~~~~~---~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDR---GGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTST---THHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhH---HHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 457899999999865321 112334444433 2366888887754
No 347
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=53.57 E-value=4.8 Score=33.99 Aligned_cols=16 Identities=13% Similarity=-0.062 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.|.+|+|+|||..
T Consensus 23 ~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTL 38 (208)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5678999999999966
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=53.15 E-value=6.3 Score=32.64 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|+|||..
T Consensus 13 ~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6789999999999977
No 349
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=53.13 E-value=31 Score=36.81 Aligned_cols=80 Identities=8% Similarity=-0.005 Sum_probs=58.1
Q ss_pred cceeEEEcchhhhhcccCccchHhhhc--CCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEECCCccccccHHH
Q psy7952 105 RSRNGWISPILSSFYLRFRDDKTSIVT--GRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHY 182 (444)
Q Consensus 105 ~~~vlil~P~~~L~~~~q~~~~~~~l~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~ 182 (444)
..++||+|+++.-+ ......+. .+ +.+..++|+++..++.......+.-.+..+|+|+| +.+.
T Consensus 503 ~~k~iVF~~~~~~~-----~~l~~~L~~~~g---~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v~~------ 567 (968)
T 3dmq_A 503 SQKVLVICAKAATA-----LQLEQVLREREG---IRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EIGS------ 567 (968)
T ss_dssp SSCCCEECSSTHHH-----HHHHHHHHTTTC---CCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CCTT------
T ss_pred CCCEEEEeCcHHHH-----HHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-chhh------
Confidence 34679999999888 55555553 47 89999999999988888888877533349999999 4432
Q ss_pred HHHHHHhhCCccEEEEeccc
Q psy7952 183 LLQHLVRYNKLAYIVVDEAH 202 (444)
Q Consensus 183 ~~~~~~~~~~~~~iViDE~H 202 (444)
.-.++..++.||+-+..
T Consensus 568 ---~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 568 ---EGRNFQFASHMVMFDLP 584 (968)
T ss_dssp ---CSSCCTTCCEEECSSCC
T ss_pred ---cCCCcccCcEEEEecCC
Confidence 23455667888865554
No 350
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=52.32 E-value=4.9 Score=34.07 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=13.4
Q ss_pred cEEEEccCCCcccccc
Q psy7952 67 DIFVSMPTGAVSLVGS 82 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a 82 (444)
.+++.+|+||||+..|
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999763
No 351
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=52.22 E-value=5 Score=36.59 Aligned_cols=15 Identities=13% Similarity=-0.146 Sum_probs=13.1
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+++.++.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 468999999999976
No 352
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=52.07 E-value=4.8 Score=34.51 Aligned_cols=16 Identities=6% Similarity=-0.153 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.|++|+|||..
T Consensus 8 ~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5689999999999977
No 353
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=52.06 E-value=13 Score=44.12 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCcccCchHH-HHHH---HHHHccCCcEEEEccCCCccccc
Q psy7952 34 QELTAKLKALFGFDSFKCELQ-KKAI---RHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 34 ~~~~~~l~~~~g~~~~~t~~Q-~~~~---~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+.+.+..++. |+.. ++.+ .+++ +.+... +.++++||||+|||.+
T Consensus 892 ~~i~~~~~~~-~l~~--~~~~~~K~~ql~e~~~~r-~gvmlvGptgsGKTt~ 939 (2695)
T 4akg_A 892 QCLKDAGQRS-GFSM--SEEFLKKCMQFYYMQKTQ-QALILVGKAGCGKTAT 939 (2695)
T ss_dssp HHHHHHHHHH-TCCC--CHHHHHHHHHHHHHHHHC-SEEEEECSTTSSHHHH
T ss_pred HHHHHHHHHc-CCcc--cHHHHHHHHHHHHHHHhc-ceEEEECCCCCCHHHH
Confidence 3445555553 7664 3343 2222 222234 7899999999999987
No 354
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=52.03 E-value=7.3 Score=32.13 Aligned_cols=16 Identities=25% Similarity=0.104 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|||||..
T Consensus 10 ~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6789999999999977
No 355
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=51.83 E-value=4.8 Score=40.36 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=14.3
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
++++.||||+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999977
No 356
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=51.63 E-value=54 Score=31.92 Aligned_cols=15 Identities=13% Similarity=-0.039 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++++++|+|||..
T Consensus 103 vI~ivG~~GvGKTTl 117 (504)
T 2j37_W 103 VIMFVGLQGSGKTTT 117 (504)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999977
No 357
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=51.55 E-value=5.4 Score=33.93 Aligned_cols=45 Identities=16% Similarity=0.022 Sum_probs=25.1
Q ss_pred CCcc--EEEEecccccc--ccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccC
Q psy7952 191 NKLA--YIVVDEAHCVS--EWGHDFRPTYRRLGELRQFTGNSIPIIALTATA 238 (444)
Q Consensus 191 ~~~~--~iViDE~H~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~ 238 (444)
.+.+ ++|+||...+. +.. ..+..+..+..+.+.. +..+++.|-..
T Consensus 120 ~~~~~~llilDe~~~~~~~d~~-~~~~~~~~l~~~~~~~--~~~vi~~~h~~ 168 (235)
T 2w0m_A 120 LGYGKARLVIDSVSALFLDKPA-MARKISYYLKRVLNKW--NFTIYATSQYA 168 (235)
T ss_dssp HCSSCEEEEEETGGGGSSSCGG-GHHHHHHHHHHHHHHT--TEEEEEEEC--
T ss_pred hCCCceEEEEECchHhhcCCHH-HHHHHHHHHHHHHHhC--CCeEEEEeccC
Confidence 4678 99999999875 321 2344444454444332 25566665554
No 358
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=51.29 E-value=4.6 Score=33.90 Aligned_cols=15 Identities=7% Similarity=-0.210 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+.+.+|.|||||.+
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467999999999977
No 359
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=50.87 E-value=4.5 Score=34.21 Aligned_cols=25 Identities=12% Similarity=-0.118 Sum_probs=18.4
Q ss_pred HHHHHHcc----CCcEEEEccCCCccccc
Q psy7952 57 AIRHILLR----THDIFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~~----~~~~ii~apTGsGKT~~ 81 (444)
.++.++.| ..-+++.+|+|+|||..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTL 36 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHH
Confidence 45555542 15689999999999977
No 360
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=50.87 E-value=5.1 Score=32.94 Aligned_cols=15 Identities=20% Similarity=0.060 Sum_probs=13.6
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+++|||||..
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999977
No 361
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=50.62 E-value=4.8 Score=39.32 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 65 ~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHL 80 (499)
T ss_dssp SEEEEECSSSSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4699999999999977
No 362
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=50.56 E-value=5.4 Score=34.15 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=13.9
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
+-+++.+|+||||+..|
T Consensus 30 kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp EEEEEECCTTCCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45788999999998763
No 363
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=50.52 E-value=5.4 Score=33.36 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|+|+|||..
T Consensus 26 ~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTL 41 (200)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 6688999999999977
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=50.52 E-value=5.7 Score=33.84 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+|+|+|||..
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 6 LKVMISGAPASGKGTQ 21 (222)
T ss_dssp CCEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5789999999999977
No 365
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=50.43 E-value=6.2 Score=32.90 Aligned_cols=43 Identities=14% Similarity=-0.024 Sum_probs=24.6
Q ss_pred hCCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEeccC
Q psy7952 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATA 238 (444)
Q Consensus 190 ~~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSAT~ 238 (444)
..+.+++|+||+..+..... ..+..+..++.. ...+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~---~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQ---LFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCS---HHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccH---HHHHHHHHHHhC---CCcEEEEEeec
Confidence 34678999999877643222 234555555543 23466546664
No 366
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=50.36 E-value=5.3 Score=32.67 Aligned_cols=15 Identities=7% Similarity=-0.270 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-.+|++|+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 568999999999976
No 367
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=50.35 E-value=5.3 Score=37.29 Aligned_cols=15 Identities=27% Similarity=0.051 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-.+|++|+|+|||..
T Consensus 25 ~~~i~G~NGaGKTTl 39 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSL 39 (365)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 578999999999966
No 368
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=50.26 E-value=3.9 Score=44.75 Aligned_cols=50 Identities=4% Similarity=-0.038 Sum_probs=33.6
Q ss_pred cEEEEccCCCcccccccccccceEEeCCCccccccCC---------ccceeEEEcchhhhhcccCccchHhhh
Q psy7952 67 DIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGN---------VRSRNGWISPILSSFYLRFRDDKTSIV 130 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~---------~~~~vlil~P~~~L~~~~q~~~~~~~l 130 (444)
..+|.|..|||||.+ ..- .++..+...| ...++|+|+=|++.+ .+.-+++
T Consensus 18 ~~lV~AsAGSGKT~~--------L~~-r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA-----~EMr~RI 76 (1180)
T 1w36_B 18 ERLIEASAGTGKTFT--------IAA-LYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAAT-----AELRGRI 76 (1180)
T ss_dssp CEEEECCTTSCHHHH--------HHH-HHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHH-----HHHHHHH
T ss_pred CEEEEECCCCCHHHH--------HHH-HHHHHHhcCCcccccCCCCCHHHEEEEeccHHHH-----HHHHHHH
Confidence 569999999999988 211 1122233221 235889999999988 6777666
No 369
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=50.25 E-value=5.5 Score=33.27 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|+|||..
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4589999999999977
No 370
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=50.20 E-value=5.5 Score=33.14 Aligned_cols=15 Identities=20% Similarity=-0.035 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+++|+|||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999977
No 371
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.16 E-value=9.6 Score=34.31 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=23.4
Q ss_pred CccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 192 ~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
+..+||+||+|.+... ....+.+.+...+.+..+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~------~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG------AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH------HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH------HHHHHHHHHhccCCCceEEEEe
Confidence 3679999999997532 1234445555555545566655
No 372
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=50.03 E-value=6 Score=37.22 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.++++.+|||+|||..
T Consensus 36 ~~~~i~G~~G~GKs~~ 51 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFT 51 (392)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 7899999999999977
No 373
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=49.99 E-value=9 Score=38.47 Aligned_cols=24 Identities=4% Similarity=-0.054 Sum_probs=19.0
Q ss_pred HHHHHccCCcEEEEccCCCcccccc
Q psy7952 58 IRHILLRTHDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 58 ~~~~~~~~~~~ii~apTGsGKT~~a 82 (444)
-..+..+ +.+++.+|+|+|||..|
T Consensus 54 ~~~i~~g-~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 54 KTAANQK-RHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHTT-CCEEEECCTTSSHHHHH
T ss_pred cccccCC-CEEEEEeCCCCCHHHHH
Confidence 3344456 89999999999999774
No 374
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=49.72 E-value=5.6 Score=33.86 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=14.6
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
..+.+.+|+|||||.++
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999773
No 375
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=49.70 E-value=9.3 Score=34.81 Aligned_cols=28 Identities=4% Similarity=-0.228 Sum_probs=20.4
Q ss_pred HHHHHHHHHHc-cCCcEEEEccCCCccccc
Q psy7952 53 LQKKAIRHILL-RTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~~~~~-~~~~~ii~apTGsGKT~~ 81 (444)
-+.+.+..++. + +.++|.||.|+|||..
T Consensus 19 ~el~~L~~~l~~~-~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 19 EESRKLEESLENY-PLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HHHHHHHHHHHHC-SEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHHhcC-CeEEEECCCcCCHHHH
Confidence 34444544443 5 7899999999999977
No 376
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=49.70 E-value=5.4 Score=32.58 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=10.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|||||..
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 6 PIIWINGPFGVGKTHT 21 (183)
T ss_dssp CEEEEECCC----CHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5689999999999977
No 377
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=49.59 E-value=9.1 Score=35.38 Aligned_cols=15 Identities=13% Similarity=-0.077 Sum_probs=13.6
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.||+|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 479999999999977
No 378
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=49.58 E-value=6.2 Score=33.54 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|||||..
T Consensus 5 ~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5689999999999977
No 379
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=49.53 E-value=5.9 Score=34.13 Aligned_cols=45 Identities=16% Similarity=0.007 Sum_probs=26.3
Q ss_pred CCccEEEEeccccccccC-CCcHHHHHHHHHHHHhhCCCCcEEEEecc
Q psy7952 191 NKLAYIVVDEAHCVSEWG-HDFRPTYRRLGELRQFTGNSIPIIALTAT 237 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~v~lSAT 237 (444)
.+.+++|+|+...+.... ...+..+..+.++.+.. +..+++.+-.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~--~~~vi~~~h~ 172 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGT--GCTSIFVSQV 172 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHT--TCEEEEEEEC
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHC--CCeEEEEecC
Confidence 468899999999886311 12344445555544433 2556665544
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=49.48 E-value=6.3 Score=32.86 Aligned_cols=16 Identities=6% Similarity=-0.240 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.++.|||||..
T Consensus 5 ~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 6789999999999977
No 381
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=49.39 E-value=5.4 Score=37.28 Aligned_cols=16 Identities=6% Similarity=-0.199 Sum_probs=13.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-.++++|||+|||.+
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3568999999999966
No 382
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=49.30 E-value=6.2 Score=34.17 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+.+|.|+|||..
T Consensus 32 e~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 6789999999999966
No 383
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=49.02 E-value=6.1 Score=31.71 Aligned_cols=15 Identities=7% Similarity=-0.188 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999977
No 384
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=48.95 E-value=6.4 Score=34.17 Aligned_cols=16 Identities=13% Similarity=-0.016 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+.+.+|+|+|||..
T Consensus 28 ~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTV 43 (246)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6799999999999976
No 385
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=48.92 E-value=5.8 Score=34.88 Aligned_cols=16 Identities=13% Similarity=-0.133 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+++.|++|+|||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 4589999999999977
No 386
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=48.90 E-value=5.9 Score=33.06 Aligned_cols=16 Identities=31% Similarity=0.098 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|||||..
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999977
No 387
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=48.87 E-value=5.9 Score=33.17 Aligned_cols=16 Identities=13% Similarity=-0.199 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|||||..
T Consensus 5 ~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEEcCCCCCHHHH
Confidence 4689999999999977
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=48.50 E-value=5.7 Score=33.63 Aligned_cols=15 Identities=13% Similarity=-0.179 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999977
No 389
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=48.46 E-value=5.9 Score=33.34 Aligned_cols=16 Identities=13% Similarity=-0.203 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|+|||||..
T Consensus 7 ~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 7 FVIGIAGGTASGKTTL 22 (211)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4578999999999977
No 390
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=47.85 E-value=5.6 Score=36.04 Aligned_cols=16 Identities=6% Similarity=-0.124 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+.|++|+|+|||..
T Consensus 127 e~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSML 142 (305)
T ss_dssp SEEEEECSSSSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 7789999999999966
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=47.82 E-value=7.1 Score=32.92 Aligned_cols=19 Identities=5% Similarity=-0.141 Sum_probs=15.5
Q ss_pred HccCCcEEEEccCCCccccc
Q psy7952 62 LLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 62 ~~~~~~~ii~apTGsGKT~~ 81 (444)
..+ .-+++.+++|+|||..
T Consensus 23 ~~~-~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 23 QRG-LTIWLTGLSASGKSTL 41 (211)
T ss_dssp SSC-EEEEEECSTTSSHHHH
T ss_pred CCC-CEEEEECCCCCCHHHH
Confidence 344 6688999999999977
No 392
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=47.71 E-value=22 Score=31.11 Aligned_cols=67 Identities=24% Similarity=0.243 Sum_probs=44.3
Q ss_pred CCceEEEEecccchHHHHHHHHHhh-----------cCHHHHHHHHHHHhcCCccEEEEcC-----ccc--cccccCCcc
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK-----------VNKHERSRVQESFMRGEINVITATI-----SFG--MGIDRQNVR 360 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~-----------~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gidi~~~~ 360 (444)
.+.+++|.+++++-+.++++.+.+. .....+......+..+ .+|+|+|+ .+. .++++.+++
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~ 203 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQ 203 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHCTTCCCTTCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCC-CCEEEEcHHHHHHHHHccCCcccccCC
Confidence 4668999999999999999988875 1112222333334444 88999994 222 246777888
Q ss_pred EEEEeC
Q psy7952 361 FVVHWG 366 (444)
Q Consensus 361 ~Vi~~~ 366 (444)
+||...
T Consensus 204 ~lViDE 209 (262)
T 3ly5_A 204 CLVIDE 209 (262)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 887544
No 393
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=47.56 E-value=5.4 Score=34.64 Aligned_cols=16 Identities=13% Similarity=-0.182 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+.+|.|+|||..
T Consensus 32 e~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6789999999999966
No 394
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=47.48 E-value=47 Score=28.31 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=42.9
Q ss_pred CCceEEEEecccchHHHHHHHHHhh----------cCHH-HHHHHHHHHhcCCccEEEEcCc-----ccc---ccccCCc
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK----------VNKH-ERSRVQESFMRGEINVITATIS-----FGM---GIDRQNV 359 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~-~r~~~~~~f~~g~~~vLvaT~~-----~~~---Gidi~~~ 359 (444)
.+.+++|.+++++-+.++++.+.+. .... ...........+...|+|+|.- +.. ++++.++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 176 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASV 176 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccC
Confidence 4568999999999999999888775 1111 1111111122456789999942 222 4677788
Q ss_pred cEEEEeC
Q psy7952 360 RFVVHWG 366 (444)
Q Consensus 360 ~~Vi~~~ 366 (444)
+++|...
T Consensus 177 ~~lViDE 183 (245)
T 3dkp_A 177 EWLVVDE 183 (245)
T ss_dssp CEEEESS
T ss_pred cEEEEeC
Confidence 8887544
No 395
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=47.02 E-value=8.8 Score=39.73 Aligned_cols=17 Identities=6% Similarity=0.003 Sum_probs=15.4
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
.++++.+|+|+|||.+|
T Consensus 208 ~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIA 224 (758)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CCeEEEcCCCCCHHHHH
Confidence 68999999999999774
No 396
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=47.00 E-value=6.6 Score=32.44 Aligned_cols=14 Identities=14% Similarity=-0.059 Sum_probs=12.8
Q ss_pred EEEEccCCCccccc
Q psy7952 68 IFVSMPTGAVSLVG 81 (444)
Q Consensus 68 ~ii~apTGsGKT~~ 81 (444)
+++.|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999977
No 397
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=46.99 E-value=25 Score=29.52 Aligned_cols=67 Identities=10% Similarity=0.186 Sum_probs=43.6
Q ss_pred CceEEEEecccchHHHHHHHHHhh------------cCHHHHHHHHHHHhcCCccEEEEcCc-----c-ccccccCCccE
Q psy7952 300 NNCGIIYCRTREHTTDLADALRRK------------VNKHERSRVQESFMRGEINVITATIS-----F-GMGIDRQNVRF 361 (444)
Q Consensus 300 ~~~~iVf~~s~~~~~~l~~~L~~~------------~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gidi~~~~~ 361 (444)
..+++|.+++++-+.++++.+++. ..........+.+..+...|+|+|.- + ...+++.++++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 161 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKH 161 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCE
Confidence 458999999999888888877664 11111222234455677899999952 1 23366778888
Q ss_pred EEEeC
Q psy7952 362 VVHWG 366 (444)
Q Consensus 362 Vi~~~ 366 (444)
+|...
T Consensus 162 lViDE 166 (220)
T 1t6n_A 162 FILDE 166 (220)
T ss_dssp EEEES
T ss_pred EEEcC
Confidence 88655
No 398
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=46.75 E-value=6.5 Score=32.84 Aligned_cols=15 Identities=13% Similarity=-0.102 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+.+.+++|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999977
No 399
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=46.62 E-value=6.8 Score=32.24 Aligned_cols=15 Identities=13% Similarity=-0.128 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.|++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368999999999977
No 400
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=46.46 E-value=6.6 Score=32.95 Aligned_cols=16 Identities=19% Similarity=-0.205 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+++|+|||..
T Consensus 22 ~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTL 37 (207)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578999999999977
No 401
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=46.44 E-value=5.9 Score=32.95 Aligned_cols=16 Identities=13% Similarity=-0.174 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+.|.+++|||||.+
T Consensus 9 ~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578999999999987
No 402
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=46.31 E-value=6 Score=33.66 Aligned_cols=25 Identities=12% Similarity=-0.154 Sum_probs=18.4
Q ss_pred HHHHHHcc----CCcEEEEccCCCccccc
Q psy7952 57 AIRHILLR----THDIFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~~----~~~~ii~apTGsGKT~~ 81 (444)
.++.++.| ..-+.+.+|+|+|||..
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHH
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHH
Confidence 45555532 15689999999999977
No 403
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=46.14 E-value=7.3 Score=33.45 Aligned_cols=27 Identities=4% Similarity=-0.274 Sum_probs=19.5
Q ss_pred HHHHHHcc----CCcEEEEccCCCccccccc
Q psy7952 57 AIRHILLR----THDIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 57 ~~~~~~~~----~~~~ii~apTGsGKT~~a~ 83 (444)
.++.++.| ..-+.+.+|+|+|||..+.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 45555542 1668999999999997743
No 404
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=45.83 E-value=3.4 Score=45.19 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHhccCCCCCceEEEEecccc-hHHHHHHHHHhh
Q psy7952 280 DSYAHVKEFIEKCLGKDNKANNCGIIYCRTRE-HTTDLADALRRK 323 (444)
Q Consensus 280 ~~~~~~~~~l~~~l~~~~~~~~~~iVf~~s~~-~~~~l~~~L~~~ 323 (444)
.....+...|..++.........+.|.+.+.. .+..+...|.+.
T Consensus 322 ~Ea~~ia~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~ 366 (1166)
T 3u4q_B 322 AELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADY 366 (1166)
T ss_dssp HHHHHHHHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHHHc
Confidence 33445555555555422223445777777764 677787777766
No 405
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=45.76 E-value=10 Score=30.50 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 34 e~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTL 49 (158)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5678999999999965
No 406
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=45.72 E-value=7.1 Score=33.35 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999977
No 407
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=45.69 E-value=8.3 Score=32.85 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+.+|.|+|||..
T Consensus 36 e~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTL 51 (214)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6788999999999966
No 408
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=45.62 E-value=5.8 Score=34.71 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|||||..
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4589999999999977
No 409
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=45.44 E-value=9.2 Score=40.23 Aligned_cols=16 Identities=6% Similarity=-0.105 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
++++++||+|+|||..
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 5799999999999977
No 410
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=45.44 E-value=7.6 Score=32.55 Aligned_cols=16 Identities=6% Similarity=-0.236 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.++.|||||..
T Consensus 11 ~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 5689999999999977
No 411
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=45.35 E-value=7.2 Score=33.88 Aligned_cols=16 Identities=6% Similarity=-0.151 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+|+|||||..
T Consensus 30 ~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4689999999999977
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=45.18 E-value=7.7 Score=32.91 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|||||..
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5689999999999977
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=45.06 E-value=7.5 Score=33.41 Aligned_cols=16 Identities=19% Similarity=0.029 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|+|||..
T Consensus 17 ~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5799999999999977
No 414
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=44.90 E-value=7.6 Score=38.43 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+|+|+|||..
T Consensus 109 ~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSL 124 (543)
T ss_dssp CEEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6799999999999977
No 415
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=44.70 E-value=10 Score=38.92 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=19.5
Q ss_pred HHHHHHccCCc--EEEEccCCCccccc
Q psy7952 57 AIRHILLRTHD--IFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~~~~~~--~ii~apTGsGKT~~ 81 (444)
.+..+++| .+ ++..++||||||.+
T Consensus 454 ~v~~~~~G-~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 454 LIQCSLDG-TNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHTT-CCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCC-ceEEEEccCCCCCchhhc
Confidence 56777888 44 67789999999988
No 416
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=44.63 E-value=7.9 Score=33.20 Aligned_cols=16 Identities=6% Similarity=-0.126 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 31 e~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTL 46 (224)
T ss_dssp CEEEEEECTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6688999999999966
No 417
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=44.50 E-value=8.2 Score=33.22 Aligned_cols=18 Identities=22% Similarity=-0.044 Sum_probs=15.2
Q ss_pred ccCCcEEEEccCCCccccc
Q psy7952 63 LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~ 81 (444)
.| +-+.+.+|.|+|||..
T Consensus 33 ~G-e~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RG-QLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TT-CEEEEECCTTSSHHHH
T ss_pred CC-CEEEEECCCCCCHHHH
Confidence 35 6788999999999966
No 418
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=44.43 E-value=7.7 Score=31.84 Aligned_cols=16 Identities=6% Similarity=-0.041 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+++|+|||..
T Consensus 14 ~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTI 29 (186)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 5689999999999977
No 419
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=44.31 E-value=6.3 Score=35.31 Aligned_cols=24 Identities=17% Similarity=-0.021 Sum_probs=18.2
Q ss_pred HHHHHH----ccCCcEEEEccCCCccccc
Q psy7952 57 AIRHIL----LRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 57 ~~~~~~----~~~~~~ii~apTGsGKT~~ 81 (444)
++..+. .| .-+++.+|+|+|||..
T Consensus 24 ~Ld~i~~~l~~G-~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 24 GINDKTLGARGG-EVIMVTSGSGMGKSTF 51 (296)
T ss_dssp THHHHHCSBCTT-CEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCCCC-eEEEEEeCCCCCHHHH
Confidence 455444 34 6789999999999977
No 420
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=44.25 E-value=8.7 Score=37.55 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.+++|.++||||||..
T Consensus 168 pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 168 PHLLVAGTTGSGASVG 183 (512)
T ss_dssp CSEEEECCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 7899999999999976
No 421
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=43.93 E-value=7.2 Score=31.79 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+.+.++.|+|||..
T Consensus 6 ~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTV 21 (179)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5678999999999977
No 422
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=43.89 E-value=7.6 Score=33.95 Aligned_cols=16 Identities=31% Similarity=0.092 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+.|.+|+|||||.+
T Consensus 28 ~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 28 PVITVDGPSGAGKGTL 43 (252)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6789999999999977
No 423
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=43.60 E-value=8.6 Score=33.88 Aligned_cols=16 Identities=13% Similarity=-0.145 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+.+|.|+|||..
T Consensus 47 e~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTI 62 (260)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6789999999999966
No 424
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=43.29 E-value=39 Score=31.62 Aligned_cols=68 Identities=13% Similarity=0.232 Sum_probs=52.4
Q ss_pred CCceEEEEecccchHHHHHHHHHhh-------------cCHHHHHHHHHHHhcCCccEEEEcCccc----cccccCCccE
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK-------------VNKHERSRVQESFMRGEINVITATISFG----MGIDRQNVRF 361 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~-------------~~~~~r~~~~~~f~~g~~~vLvaT~~~~----~Gidi~~~~~ 361 (444)
.+.+++|.++++.-+.++++.+... .+..++....+.+..|...|+|+|+-.- .-++..++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 5789999999999999999999882 5566777788888889999999996421 1245567888
Q ss_pred EEEeC
Q psy7952 362 VVHWG 366 (444)
Q Consensus 362 Vi~~~ 366 (444)
||...
T Consensus 143 iViDE 147 (414)
T 3oiy_A 143 VFVDD 147 (414)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 87544
No 425
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=43.25 E-value=8.8 Score=33.50 Aligned_cols=16 Identities=13% Similarity=-0.132 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+.+|.|+|||..
T Consensus 36 e~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTL 51 (247)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6789999999999976
No 426
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=43.19 E-value=8.6 Score=32.25 Aligned_cols=16 Identities=13% Similarity=-0.182 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.++.|||||..
T Consensus 10 ~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6789999999999977
No 427
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=43.08 E-value=8.8 Score=33.70 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 34 e~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTL 49 (257)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6788999999999966
No 428
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=42.65 E-value=8.9 Score=34.13 Aligned_cols=16 Identities=6% Similarity=-0.247 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 35 e~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTL 50 (275)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6689999999999966
No 429
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=42.50 E-value=8.6 Score=32.34 Aligned_cols=16 Identities=6% Similarity=-0.224 Sum_probs=13.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-.+|.+|+|+|||.+
T Consensus 24 ~~~~I~G~NgsGKSti 39 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEEcCCCCCHHHH
Confidence 3568999999999976
No 430
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=42.26 E-value=19 Score=32.50 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=24.8
Q ss_pred CCccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Q psy7952 191 NKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235 (444)
Q Consensus 191 ~~~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lS 235 (444)
...+++||||+|.+... ....+.+.+...+++..+|+.|
T Consensus 81 ~~~kvviIdead~lt~~------a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ------AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHH------HHHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHH------HHHHHHHHHhCCCCCeEEEEEE
Confidence 35789999999997532 2345555555555545555555
No 431
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=42.22 E-value=7.8 Score=32.33 Aligned_cols=15 Identities=20% Similarity=-0.115 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+.+.+++|||||.+
T Consensus 14 iIgltG~~GSGKSTv 28 (192)
T 2grj_A 14 VIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999987
No 432
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=41.96 E-value=9.4 Score=33.76 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+.+|.|+|||..
T Consensus 38 e~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTL 53 (266)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 6788999999999966
No 433
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=41.92 E-value=9.5 Score=33.09 Aligned_cols=16 Identities=13% Similarity=-0.018 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 33 e~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTT 48 (240)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6788999999999966
No 434
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=41.73 E-value=8 Score=32.74 Aligned_cols=16 Identities=6% Similarity=-0.174 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+.+.++.|||||.+
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578999999999977
No 435
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=41.55 E-value=15 Score=33.46 Aligned_cols=27 Identities=7% Similarity=-0.192 Sum_probs=20.9
Q ss_pred HHHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 53 LQKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 53 ~Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
-+.+.+.. +.. +.++|.||.|+|||..
T Consensus 20 ~el~~L~~-l~~-~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 20 KEIEKLKG-LRA-PITLVLGLRRTGKSSI 46 (357)
T ss_dssp HHHHHHHH-TCS-SEEEEEESTTSSHHHH
T ss_pred HHHHHHHH-hcC-CcEEEECCCCCCHHHH
Confidence 45555555 655 6899999999999977
No 436
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=41.51 E-value=7.4 Score=40.27 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=14.0
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
++++.+|||+|||..
T Consensus 490 ~~ll~G~~GtGKT~l 504 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEV 504 (758)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 599999999999977
No 437
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=41.44 E-value=46 Score=27.98 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=41.4
Q ss_pred CCceEEEEecccchHHHHHHHHHhh----------cCHHHHHHHHHHHhcCCccEEEEcCc-----c-ccccccCCccEE
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRGEINVITATIS-----F-GMGIDRQNVRFV 362 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~----------~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gidi~~~~~V 362 (444)
.+.+++|.+++++-+.++++.+.+. ..........+.+.. ...|+|+|.- + ...+++.++++|
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~l 171 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK-GVDIIIATPGRLNDLQMNNSVNLRSITYL 171 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS-CCSEEEECHHHHHHHHHTTCCCCTTCCEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCCcCcccceEE
Confidence 4678999999999999998888774 122222222233333 4789999952 1 234567778887
Q ss_pred EEeC
Q psy7952 363 VHWG 366 (444)
Q Consensus 363 i~~~ 366 (444)
|...
T Consensus 172 ViDE 175 (228)
T 3iuy_A 172 VIDE 175 (228)
T ss_dssp EECC
T ss_pred EEEC
Confidence 7544
No 438
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=41.34 E-value=8.2 Score=33.58 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+.+|.|+|||..
T Consensus 29 e~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTI 44 (243)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6689999999999966
No 439
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=41.15 E-value=9.6 Score=34.46 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|+|+|||..
T Consensus 103 ~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4678999999999976
No 440
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=41.10 E-value=7.6 Score=37.18 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=13.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++++++|+|||.+
T Consensus 101 ~vI~ivG~~GvGKTT~ 116 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTS 116 (433)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577889999999977
No 441
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=41.00 E-value=9.9 Score=33.49 Aligned_cols=16 Identities=13% Similarity=-0.089 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 33 e~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTF 48 (262)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6688999999999966
No 442
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=40.90 E-value=10 Score=33.19 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 27 e~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTL 42 (249)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 6788999999999966
No 443
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=40.89 E-value=7.8 Score=34.28 Aligned_cols=16 Identities=13% Similarity=-0.053 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 47 e~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6788999999999966
No 444
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=40.65 E-value=68 Score=35.49 Aligned_cols=52 Identities=8% Similarity=-0.007 Sum_probs=31.7
Q ss_pred HHHhcCCCeeEEEECCCccccccHHHHH-HHHHhhCCccEEEEeccccccccC
Q psy7952 157 ELRLVKPRIKLLYVTPERAVTESFHYLL-QHLVRYNKLAYIVVDEAHCVSEWG 208 (444)
Q Consensus 157 ~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~-~~~~~~~~~~~iViDE~H~~~~~~ 208 (444)
.+..++++.+-.|+--+.-.+-.-...+ -...-.++-+.+|+||+=.-+|..
T Consensus 536 ~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~ 588 (1321)
T 4f4c_A 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE 588 (1321)
T ss_dssp HHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTT
T ss_pred HHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHH
Confidence 3455677888888876654443212211 122235678999999998776643
No 445
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=40.63 E-value=10 Score=33.23 Aligned_cols=16 Identities=13% Similarity=-0.151 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 32 e~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTL 47 (253)
T ss_dssp CEEEEECCSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6788999999999966
No 446
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=40.37 E-value=8.1 Score=34.17 Aligned_cols=16 Identities=19% Similarity=0.056 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 34 e~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 6788999999999966
No 447
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=40.36 E-value=9.6 Score=29.94 Aligned_cols=15 Identities=0% Similarity=-0.190 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+++|+|||..
T Consensus 3 ki~v~G~~~~GKSsl 17 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSL 17 (161)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999966
No 448
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=40.23 E-value=10 Score=33.24 Aligned_cols=16 Identities=19% Similarity=0.011 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 42 ei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6788999999999966
No 449
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=40.14 E-value=9.6 Score=34.44 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=13.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|+|+|||..
T Consensus 101 ~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTS 116 (302)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 4578999999999977
No 450
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=40.13 E-value=7.5 Score=35.24 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+++|+|+|||..
T Consensus 81 e~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTI 96 (306)
T ss_dssp CEEEEESSSCHHHHHH
T ss_pred CEEEEECCCCchHHHH
Confidence 6789999999999976
No 451
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=40.03 E-value=9.6 Score=31.85 Aligned_cols=16 Identities=0% Similarity=-0.344 Sum_probs=13.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+++|+|||..
T Consensus 23 ~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578999999999977
No 452
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=40.01 E-value=10 Score=34.19 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 106 ~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTT 121 (296)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5688999999999977
No 453
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=39.90 E-value=10 Score=33.68 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=18.8
Q ss_pred HHHccCCcEEEEccCCCcccccccc
Q psy7952 60 HILLRTHDIFVSMPTGAVSLVGSVV 84 (444)
Q Consensus 60 ~~~~~~~~~ii~apTGsGKT~~a~~ 84 (444)
.+..| .-+++.+|+|+|||..+..
T Consensus 26 gl~~G-~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 26 NMVAG-TVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TEETT-SEEEEEESTTSSHHHHHHH
T ss_pred CccCC-CEEEEEcCCCCCHHHHHHH
Confidence 34556 7899999999999977443
No 454
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=39.80 E-value=10 Score=30.90 Aligned_cols=15 Identities=7% Similarity=-0.454 Sum_probs=12.9
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+.+.++.|+|||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999966
No 455
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=39.78 E-value=9.7 Score=34.99 Aligned_cols=15 Identities=7% Similarity=-0.208 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-.++++|+|+|||..
T Consensus 25 ~~~i~G~NGsGKS~l 39 (339)
T 3qkt_A 25 INLIIGQNGSGKSSL 39 (339)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468999999999977
No 456
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=39.78 E-value=11 Score=33.34 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+.+|.|+|||..
T Consensus 51 ei~~liG~NGsGKSTL 66 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTF 66 (263)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEEcCCCCcHHHH
Confidence 6788999999999966
No 457
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=39.77 E-value=9.2 Score=33.88 Aligned_cols=15 Identities=20% Similarity=0.085 Sum_probs=13.1
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+.+.||+|+|||..
T Consensus 4 ~v~lvG~nGaGKSTL 18 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL 18 (270)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999966
No 458
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=39.75 E-value=11 Score=32.99 Aligned_cols=16 Identities=19% Similarity=-0.053 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-+.+.+|.|+|||..
T Consensus 30 e~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTL 45 (250)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6788999999999966
No 459
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=39.61 E-value=5.6 Score=33.46 Aligned_cols=14 Identities=21% Similarity=-0.024 Sum_probs=12.7
Q ss_pred EEEEccCCCccccc
Q psy7952 68 IFVSMPTGAVSLVG 81 (444)
Q Consensus 68 ~ii~apTGsGKT~~ 81 (444)
+++.|++|||||..
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 68999999999976
No 460
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=39.53 E-value=9.9 Score=34.03 Aligned_cols=15 Identities=13% Similarity=-0.168 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+++.+++|||||..
T Consensus 4 ~I~l~G~~GsGKST~ 18 (301)
T 1ltq_A 4 IILTIGCPGSGKSTW 18 (301)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999977
No 461
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=39.46 E-value=10 Score=31.01 Aligned_cols=16 Identities=6% Similarity=-0.191 Sum_probs=13.5
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+++|+|||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3578999999999966
No 462
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=39.29 E-value=10 Score=34.05 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=13.1
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+.|.+|+|+|||..
T Consensus 33 ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468999999999977
No 463
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=39.22 E-value=13 Score=32.69 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=23.4
Q ss_pred hCCcccCchHHHHH---HHHHHc-c--CCcEEEEccCCCccccc
Q psy7952 44 FGFDSFKCELQKKA---IRHILL-R--THDIFVSMPTGAVSLVG 81 (444)
Q Consensus 44 ~g~~~~~t~~Q~~~---~~~~~~-~--~~~~ii~apTGsGKT~~ 81 (444)
.|+..+|...|... +..+.. + .-.+++.+++|+|||..
T Consensus 12 ~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSL 55 (270)
T 1h65_A 12 SGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSST 55 (270)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHH
T ss_pred cchhhccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHH
Confidence 46777774444442 222222 1 13689999999999966
No 464
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=39.08 E-value=10 Score=29.97 Aligned_cols=15 Identities=7% Similarity=-0.201 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+++|+|||..
T Consensus 7 ~i~v~G~~~~GKssl 21 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSM 21 (168)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 589999999999966
No 465
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=39.03 E-value=11 Score=33.38 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.|.+|.|+|||..
T Consensus 46 e~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTV 61 (271)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6788999999999966
No 466
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=39.02 E-value=60 Score=30.58 Aligned_cols=16 Identities=13% Similarity=-0.182 Sum_probs=13.8
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+++++++|||||..
T Consensus 259 ~lIil~G~pGSGKSTl 274 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTF 274 (416)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3478999999999977
No 467
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=38.91 E-value=10 Score=29.83 Aligned_cols=15 Identities=13% Similarity=-0.028 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.+++|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (166)
T 2ce2_X 5 KLVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999966
No 468
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=38.71 E-value=11 Score=33.51 Aligned_cols=16 Identities=13% Similarity=-0.105 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 48 e~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTL 63 (279)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 6788999999999966
No 469
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=38.53 E-value=9.5 Score=33.23 Aligned_cols=17 Identities=24% Similarity=-0.193 Sum_probs=14.4
Q ss_pred cEEEEccCCCccccccc
Q psy7952 67 DIFVSMPTGAVSLVGSV 83 (444)
Q Consensus 67 ~~ii~apTGsGKT~~a~ 83 (444)
.+.|.+++|||||.+|-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998743
No 470
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=38.39 E-value=46 Score=28.39 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=41.9
Q ss_pred CCceEEEEecccchHHHHHHHHHhh--------------cCHHHHHHHHHHHhcCCccEEEEcC-----cccc-ccccCC
Q psy7952 299 ANNCGIIYCRTREHTTDLADALRRK--------------VNKHERSRVQESFMRGEINVITATI-----SFGM-GIDRQN 358 (444)
Q Consensus 299 ~~~~~iVf~~s~~~~~~l~~~L~~~--------------~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gidi~~ 358 (444)
.+.++||.+++++-+.++++.+.+. .+.... ...+.. ...|+|+|+ .+.. .+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ---IRDLER-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHH---HHHHHH-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH---HHHhcC-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 4667999999999999988877764 122222 222222 478999995 2322 357778
Q ss_pred ccEEEEeC
Q psy7952 359 VRFVVHWG 366 (444)
Q Consensus 359 ~~~Vi~~~ 366 (444)
++++|...
T Consensus 177 ~~~lViDE 184 (242)
T 3fe2_A 177 TTYLVLDE 184 (242)
T ss_dssp CCEEEETT
T ss_pred ccEEEEeC
Confidence 88887544
No 471
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=38.37 E-value=17 Score=35.27 Aligned_cols=86 Identities=10% Similarity=-0.004 Sum_probs=0.0
Q ss_pred cCCcEEEEccCCCcccccccccccceEEeCCCccccccCCccceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEE
Q psy7952 64 RTHDIFVSMPTGAVSLVGSVVSARSRVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELI 142 (444)
Q Consensus 64 ~~~~~ii~apTGsGKT~~a~~~~~~~~~~~~~~~~l~~~~~~~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~ 142 (444)
+ ....+.+.||+|||++ ..--+ -..++.. ||++|+...+ .+....+ .+.+.. +..+
T Consensus 14 ~-~~~~l~g~~gs~ka~~--------~a~l~----~~~~~p~---lvv~~~~~~A-----~~l~~~l~~~~~~~--v~~f 70 (483)
T 3hjh_A 14 G-EQRLLGELTGAACATL--------VAEIA----ERHAGPV---VLIAPDMQNA-----LRLHDEISQFTDQM--VMNL 70 (483)
T ss_dssp T-CEEEEECCCTTHHHHH--------HHHHH----HHSSSCE---EEEESSHHHH-----HHHHHHHHHTCSSC--EEEC
T ss_pred C-CeEEEeCCCchHHHHH--------HHHHH----HHhCCCE---EEEeCCHHHH-----HHHHHHHHhhCCCc--EEEE
Q ss_pred eCC---------CChhhHHHHHHHHHhcCCCeeEEEECC
Q psy7952 143 VSG---------QTKTENKAILEELRLVKPRIKLLYVTP 172 (444)
Q Consensus 143 ~~~---------~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 172 (444)
-.. ............+..+..+.+.+|.|+
T Consensus 71 p~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~s 109 (483)
T 3hjh_A 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVP 109 (483)
T ss_dssp CCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEE
T ss_pred eCcccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEE
No 472
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=38.28 E-value=6.7 Score=36.53 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=0.0
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEEC
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVT 171 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 171 (444)
.++||+|+++.-+ ....+.+ ..+ +.+..++|+....++......++ .+..+|+|+|
T Consensus 260 ~~~lVf~~~~~~~-----~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~--~~~~~vlv~T 316 (394)
T 1fuu_A 260 TQAVIFCNTRRKV-----EELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFR--SGSSRILIST 316 (394)
T ss_dssp -------------------------------------------------------------------
T ss_pred CcEEEEECCHHHH-----HHHHHHHHHcC---CeEEEeeCCCCHHHHHHHHHHHH--CCCCcEEEEC
Confidence 4679999999988 5555555 556 78888999988877777776654 3567899999
No 473
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=38.16 E-value=11 Score=31.25 Aligned_cols=16 Identities=6% Similarity=-0.189 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
-.+++.+++|+|||..
T Consensus 29 ~ki~v~G~~~~GKSsl 44 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSF 44 (199)
T ss_dssp EEEEEESSTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 4689999999999966
No 474
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=38.16 E-value=11 Score=35.14 Aligned_cols=16 Identities=6% Similarity=-0.122 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+.+++.+|+|+|||..
T Consensus 170 ~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTL 185 (377)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6789999999999966
No 475
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=38.14 E-value=28 Score=33.05 Aligned_cols=52 Identities=6% Similarity=0.100 Sum_probs=37.6
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEEC
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVT 171 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 171 (444)
.+++|+||++.-+ .+..+.+ ..+ .++..++|.. +......+. .+..+|+|+|
T Consensus 172 ~~~lVF~~~~~~~-----~~l~~~L~~~~---~~v~~lhg~~----r~~~~~~f~--~g~~~vLVaT 224 (431)
T 2v6i_A 172 GRTVWFVHSIKQG-----AEIGTCLQKAG---KKVLYLNRKT----FESEYPKCK--SEKWDFVITT 224 (431)
T ss_dssp SCEEEECSSHHHH-----HHHHHHHHHTT---CCEEEESTTT----HHHHTTHHH--HSCCSEEEEC
T ss_pred CCEEEEeCCHHHH-----HHHHHHHHHcC---CeEEEeCCcc----HHHHHHhhc--CCCCeEEEEC
Confidence 3679999999988 5666666 556 8899999862 333444443 3688999999
No 476
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=38.10 E-value=16 Score=37.13 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=48.3
Q ss_pred cceeEEEcchhhhhcccCccchHhhh-cC---CCCceeEEEEeCC--------CChhhHHHHHHHHHhcCCCeeEEEECC
Q psy7952 105 RSRNGWISPILSSFYLRFRDDKTSIV-TG---RSDLYQLELIVSG--------QTKTENKAILEELRLVKPRIKLLYVTP 172 (444)
Q Consensus 105 ~~~vlil~P~~~L~~~~q~~~~~~~l-~~---~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~Iiv~Tp 172 (444)
..++||.++++..+ ....+.+ .. ...++.+..++|+ ++..++...+..++ .+..+|+|+|.
T Consensus 400 ~~~~IVF~~s~~~~-----~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~--~g~~~VLVaT~ 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSA-----YALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFR--TGKINLLIATT 472 (699)
T ss_dssp CCCEEEECSCHHHH-----HHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHC--C---CCSEEEC
T ss_pred CCcEEEEECcHHHH-----HHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHh--cCCCcEEEEcc
Confidence 34679999999998 4555555 32 1112889999999 88888888888775 47789999993
Q ss_pred CccccccHHHHHHHHHhhCCccEEE
Q psy7952 173 ERAVTESFHYLLQHLVRYNKLAYIV 197 (444)
Q Consensus 173 e~l~~~~~~~~~~~~~~~~~~~~iV 197 (444)
-- ..-.++..+++||
T Consensus 473 ~~----------~~GIDip~v~~VI 487 (699)
T 4gl2_A 473 VA----------EEGLDIKECNIVI 487 (699)
T ss_dssp SC----------CTTSCCCSCCCCE
T ss_pred cc----------ccCCccccCCEEE
Confidence 21 2233556777777
No 477
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=38.06 E-value=11 Score=34.45 Aligned_cols=16 Identities=6% Similarity=-0.201 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
..+++.+|+|+|||..
T Consensus 124 sviLI~GpPGsGKTtL 139 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPL 139 (331)
T ss_dssp EEEEEECSCSSSHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 4579999999999977
No 478
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=37.86 E-value=10 Score=31.63 Aligned_cols=15 Identities=7% Similarity=-0.035 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+.|.+++|||||.+
T Consensus 4 ~i~i~G~~GsGKst~ 18 (208)
T 3ake_A 4 IVTIDGPSASGKSSV 18 (208)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999977
No 479
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=37.85 E-value=11 Score=29.86 Aligned_cols=15 Identities=13% Similarity=-0.071 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.|++|+|||..
T Consensus 8 ~i~v~G~~~~GKSsl 22 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSI 22 (170)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 589999999999966
No 480
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=37.66 E-value=11 Score=30.83 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
-.+++.|++|+|||..
T Consensus 49 ~~i~vvG~~g~GKSsl 64 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSL 64 (193)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5799999999999966
No 481
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=37.64 E-value=14 Score=34.98 Aligned_cols=15 Identities=20% Similarity=0.060 Sum_probs=13.7
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+.+.+|+|+|||..
T Consensus 71 ~valvG~nGaGKSTL 85 (413)
T 1tq4_A 71 NVAVTGETGSGKSSF 85 (413)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 788999999999966
No 482
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=37.64 E-value=19 Score=32.80 Aligned_cols=15 Identities=7% Similarity=-0.212 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+.+.||+|+|||..
T Consensus 94 iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999977
No 483
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=37.50 E-value=11 Score=29.60 Aligned_cols=15 Identities=13% Similarity=-0.044 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.|++|+|||..
T Consensus 5 ~i~v~G~~~~GKSsl 19 (167)
T 1kao_A 5 KVVVLGSGGVGKSAL 19 (167)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999966
No 484
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=37.38 E-value=11 Score=29.88 Aligned_cols=15 Identities=13% Similarity=0.020 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.|++|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (170)
T 1g16_A 5 KILLIGDSGVGKSCL 19 (170)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 589999999999966
No 485
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=37.36 E-value=5.2 Score=33.53 Aligned_cols=16 Identities=6% Similarity=-0.207 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
+-.++.+|.|+|||..
T Consensus 21 ~l~fiyG~MgsGKTt~ 36 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTE 36 (195)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCcHHHH
Confidence 5679999999999955
No 486
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=37.29 E-value=12 Score=32.59 Aligned_cols=16 Identities=31% Similarity=0.102 Sum_probs=13.6
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-+.+.+|.|+|||..
T Consensus 25 e~~~liG~nGsGKSTL 40 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVF 40 (240)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4577999999999966
No 487
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=37.18 E-value=11 Score=29.71 Aligned_cols=15 Identities=0% Similarity=-0.230 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
++++.|++|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSI 19 (170)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999966
No 488
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=37.02 E-value=11 Score=30.16 Aligned_cols=16 Identities=6% Similarity=-0.043 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
-.+++.|++|+|||..
T Consensus 9 ~~i~v~G~~~~GKSsl 24 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSL 24 (182)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3689999999999966
No 489
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=36.99 E-value=6.1 Score=32.31 Aligned_cols=15 Identities=0% Similarity=-0.248 Sum_probs=13.1
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+.+++++|+|||..
T Consensus 4 ~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999976
No 490
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=36.85 E-value=33 Score=28.78 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=21.5
Q ss_pred ccEEEEeccccccccCCCcHHHHHHHHHHHHhhCCCCcEEEEec
Q psy7952 193 LAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTA 236 (444)
Q Consensus 193 ~~~iViDE~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~lSA 236 (444)
-.+||+||+|.+.. .....+...+...+.+..+|+.|.
T Consensus 127 ~~vlviDe~~~l~~------~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 127 FKVYLIDEVHMLSR------HSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SEEEEEETGGGSCH------HHHHHHHHHHHSCCTTEEEEEEES
T ss_pred ceEEEEECcccccH------HHHHHHHHHHhcCCCceEEEEEeC
Confidence 46899999999642 223444444444444344555543
No 491
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=36.82 E-value=11 Score=33.86 Aligned_cols=15 Identities=27% Similarity=0.058 Sum_probs=10.4
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
-+.|.||.|||||.+
T Consensus 7 iIgItG~sGSGKSTv 21 (290)
T 1a7j_A 7 IISVTGSSGAGTSTV 21 (290)
T ss_dssp EEEEESCC---CCTH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999977
No 492
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=36.70 E-value=13 Score=33.91 Aligned_cols=16 Identities=13% Similarity=-0.056 Sum_probs=13.7
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
.-.++.+|+|+|||..
T Consensus 25 g~~~i~G~NGsGKS~l 40 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNI 40 (322)
T ss_dssp SEEEEECCTTTCSTHH
T ss_pred CcEEEECCCCCcHHHH
Confidence 3578999999999966
No 493
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=36.60 E-value=10 Score=33.77 Aligned_cols=15 Identities=7% Similarity=-0.186 Sum_probs=13.6
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+.+.|++|||||.+
T Consensus 77 iI~I~G~~GSGKSTv 91 (281)
T 2f6r_A 77 VLGLTGISGSGKSSV 91 (281)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 489999999999977
No 494
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=36.53 E-value=12 Score=32.31 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=14.7
Q ss_pred CcEEEEccCCCcccccc
Q psy7952 66 HDIFVSMPTGAVSLVGS 82 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~a 82 (444)
..+.+.+|+|+|||.++
T Consensus 10 ~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999773
No 495
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=36.24 E-value=8.7 Score=31.47 Aligned_cols=30 Identities=0% Similarity=-0.271 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHccCCcEEEEccCCCccccc
Q psy7952 52 ELQKKAIRHILLRTHDIFVSMPTGAVSLVG 81 (444)
Q Consensus 52 ~~Q~~~~~~~~~~~~~~ii~apTGsGKT~~ 81 (444)
+.|.-..+......-.+++.+++|+|||..
T Consensus 9 ~~~~~~~~~~~~~~~ki~v~G~~~~GKSsl 38 (188)
T 1zd9_A 9 HHSSGLVPRGSKEEMELTLVGLQYSGKTTF 38 (188)
T ss_dssp ----------CCEEEEEEEECSTTSSHHHH
T ss_pred cccccccccCCCCccEEEEECCCCCCHHHH
Confidence 345555555554435799999999999966
No 496
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=36.03 E-value=12 Score=29.41 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
-.+++.|++|+|||..
T Consensus 5 ~~i~v~G~~~~GKssl 20 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSAL 20 (168)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3689999999999966
No 497
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=36.01 E-value=16 Score=34.99 Aligned_cols=52 Identities=6% Similarity=0.176 Sum_probs=34.4
Q ss_pred ceeEEEcchhhhhcccCccchHhhh-cCCCCceeEEEEeCCCChhhHHHHHHHHHhcCCCeeEEEEC
Q psy7952 106 SRNGWISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVT 171 (444)
Q Consensus 106 ~~vlil~P~~~L~~~~q~~~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iiv~T 171 (444)
.+++|+||++.-+ .+..+.+ ..+ +++..++|.. +.......+ .+..+|+|+|
T Consensus 178 ~~~lVF~~s~~~a-----~~l~~~L~~~~---~~v~~lhg~~----R~~~~~~F~--~g~~~vLVaT 230 (440)
T 1yks_A 178 RPTAWFLPSIRAA-----NVMAASLRKAG---KSVVVLNRKT----FEREYPTIK--QKKPDFILAT 230 (440)
T ss_dssp SCEEEECSCHHHH-----HHHHHHHHHTT---CCEEECCSSS----CC----------CCCSEEEES
T ss_pred CCEEEEeCCHHHH-----HHHHHHHHHcC---CCEEEecchh----HHHHHhhhc--CCCceEEEEC
Confidence 4679999999998 6666666 556 8899999832 223333332 4678999999
No 498
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=35.94 E-value=12 Score=29.89 Aligned_cols=15 Identities=7% Similarity=-0.108 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+++.|++|+|||..
T Consensus 9 ~i~v~G~~~~GKSsl 23 (177)
T 1wms_A 9 KVILLGDGGVGKSSL 23 (177)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999966
No 499
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=35.85 E-value=13 Score=30.81 Aligned_cols=15 Identities=7% Similarity=-0.090 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy7952 67 DIFVSMPTGAVSLVG 81 (444)
Q Consensus 67 ~~ii~apTGsGKT~~ 81 (444)
.+.+.+++|+|||..
T Consensus 7 kv~lvG~~g~GKSTL 21 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNL 21 (199)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 578999999999966
No 500
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=35.73 E-value=12 Score=29.55 Aligned_cols=16 Identities=13% Similarity=-0.193 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy7952 66 HDIFVSMPTGAVSLVG 81 (444)
Q Consensus 66 ~~~ii~apTGsGKT~~ 81 (444)
-.+++.|++|+|||..
T Consensus 4 ~~i~v~G~~~~GKssl 19 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSL 19 (172)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3589999999999966
Done!