AmiGO: BLAST Results


BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 RecQ protein-like 5	protein from Homo sapiens	2.0e-72
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	4.1e-72
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	4.1e-72
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Bos taurus	2.9e-71
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Sus scrofa	6.1e-71
BLAST match view associations BLAST with Recql5 Recql5 Recql5 RecQ protein-like 5	gene from Rattus norvegicus	6.1e-71
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Canis lupus familiaris	3.3e-69
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Gallus gallus	5.4e-67
BLAST match view associations BLAST with RecQ5 RecQ5 RecQ5 homolog of RecQ	protein from Drosophila melanogaster	1.6e-55
BLAST match view associations BLAST with rcq-5 rcq-5 rcq-5	gene from Caenorhabditis elegans	3.9e-54
BLAST match view associations BLAST with RecQl3 RecQl3 RecQl3 AT4G35740	protein from Arabidopsis thaliana	6.5e-51
BLAST match view associations BLAST with him-6 him-6 him-6	gene from Caenorhabditis elegans	5.9e-50
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Bos taurus	1.5e-48
BLAST match view associations BLAST with blm blm blm Bloom syndrome protein homolog	protein from Xenopus laevis	1.9e-48
BLAST match view associations BLAST with RECQI1 RECQI1 RECQI1 RECQ helicase l1	protein from Arabidopsis thaliana	2.0e-47
BLAST match view associations BLAST with CBU_0472 CBU_0472 CBU_0472 ATP-dependent DNA helicase RecQ	protein from Coxiella burnetii RSA 493	5.4e-47
BLAST match view associations BLAST with GSU_0898 GSU_0898 GSU_0898 ATP-dependent DNA helicase RecQ	protein from Geobacter sulfurreducens PCA	8.6e-47
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Canis lupus familiaris	1.3e-46
BLAST match view associations BLAST with RECQ4A RECQ4A RECQ4A	protein from Arabidopsis thaliana	1.3e-46
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Canis lupus familiaris	1.3e-46
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein	protein from Homo sapiens	1.8e-46
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein	protein from Homo sapiens	2.2e-46
BLAST match view associations BLAST with DDB_G0272384 DDB_G0272384 DDB_G0272384 Bloom syndrome-like protein	gene from Dictyostelium discoideum	2.5e-46
BLAST match view associations BLAST with blm blm blm Bloom syndrome protein	gene from Dictyostelium discoideum	3.0e-46
BLAST match view associations BLAST with VC_0196 VC_0196 VC_0196 ATP-dependent DNA helicase RecQ	protein from Vibrio cholerae O1 biovar El Tor str. N16961	4.7e-46
BLAST match view associations BLAST with VC_0196 VC_0196 VC_0196 ATP-dependent DNA helicase RecQ	protein from Vibrio cholerae O1 biovar El Tor	4.7e-46
BLAST match view associations BLAST with blm blm blm Bloom syndrome	gene_product from Danio rerio	1.6e-45
BLAST match view associations BLAST with Blm Blm Blm Bloom syndrome, RecQ helicase-like	protein from Mus musculus	4.1e-45
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein homolog	protein from Gallus gallus	6.6e-44
BLAST match view associations BLAST with SGS1 SGS1 SGS1	gene_product from Candida albicans	6.0e-43
BLAST match view associations BLAST with SGS1 SGS1 SGS1 Putative uncharacterized protein SGS1	protein from Candida albicans SC5314	6.0e-43
BLAST match view associations BLAST with SGS1 SGS1 SGS1 Nucleolar DNA helicase of the RecQ family	gene from Saccharomyces cerevisiae	9.4e-43
BLAST match view associations BLAST with SO_4241 SO_4241 SO_4241 ATP-dependent DNA helicase RecQ	protein from Shewanella oneidensis MR-1	1.2e-42
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein homolog	protein from Gallus gallus	1.3e-42
BLAST match view associations BLAST with Blm Blm Blm Bloom syndrome helicase ortholog	protein from Drosophila melanogaster	1.3e-42
BLAST match view associations BLAST with Blm Blm Blm Bloom syndrome, RecQ helicase-like	gene from Rattus norvegicus	1.9e-42
BLAST match view associations BLAST with recQ recQ recQ	protein from Escherichia coli K-12	4.0e-42
BLAST match view associations BLAST with F1RX70 F1RX70 F1RX70 Uncharacterized protein	protein from Sus scrofa	1.7e-41
BLAST match view associations BLAST with I3LC91 I3LC91 I3LC91 Uncharacterized protein	protein from Sus scrofa	2.1e-41
BLAST match view associations BLAST with BA_2818 BA_2818 BA_2818 ATP-dependent DNA helicase RecQ	protein from Bacillus anthracis str. Ames	3.4e-40
BLAST match view associations BLAST with wrn wrn wrn Werner syndrome ATP-dependent helicase homolog	protein from Xenopus laevis	4.3e-40
BLAST match view associations BLAST with wrn-1 wrn-1 wrn-1	gene from Caenorhabditis elegans	1.1e-39
BLAST match view associations BLAST with recQ recQ recQ Probable ATP-dependent DNA helicase RecQ	protein from Bacillus subtilis subsp. subtilis str. 168	1.8e-39
BLAST match view associations BLAST with wrn wrn wrn Werner syndrome protein	gene from Dictyostelium discoideum	2.0e-39
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Bos taurus	2.0e-38
BLAST match view associations BLAST with WRN WRN WRN Werner syndrome ATP-dependent helicase	protein from Homo sapiens	2.1e-38
BLAST match view associations BLAST with RECQL2 RECQL2 RECQL2 RECQ helicase L2	protein from Arabidopsis thaliana	2.6e-38
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	3.4e-38
BLAST match view associations BLAST with K02F3.12 K02F3.12 K02F3.12	gene from Caenorhabditis elegans	5.9e-38
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Canis lupus familiaris	8.6e-38
BLAST match view associations BLAST with Wrn Wrn Wrn Werner syndrome homolog (human)	protein from Mus musculus	1.1e-37
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Gallus gallus	1.3e-37
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Canis lupus familiaris	1.3e-37
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Canis lupus familiaris	1.4e-37
BLAST match view associations BLAST with Recql Recql Recql RecQ protein-like	protein from Mus musculus	3.7e-37
BLAST match view associations BLAST with CPS_4237 CPS_4237 CPS_4237 RecQ domain protein	protein from Colwellia psychrerythraea 34H	5.4e-37
BLAST match view associations BLAST with CPS_4237 CPS_4237 CPS_4237 RecQ domain protein	protein from Colwellia psychrerythraea 34H	5.4e-37
BLAST match view associations BLAST with SPO_0107 SPO_0107 SPO_0107 ATP-dependent DNA helicase RecQ	protein from Ruegeria pomeroyi DSS-3	1.0e-36
BLAST match view associations BLAST with Recql Recql Recql RecQ protein-like (DNA helicase Q1-like)	gene from Rattus norvegicus	2.1e-35
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Bos taurus	4.5e-35
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Sus scrofa	7.4e-35
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Canis lupus familiaris	9.4e-35
BLAST match view associations BLAST with RECQL RECQL RECQL ATP-dependent DNA helicase Q1	protein from Homo sapiens	9.6e-35
BLAST match view associations BLAST with SO_2380 SO_2380 SO_2380 ATP-dependent DNA helicase RecQ family	protein from Shewanella oneidensis MR-1	1.6e-34
BLAST match view associations BLAST with SO_2380 SO_2380 SO_2380 RecQ domain protein	protein from Shewanella oneidensis MR-1	1.6e-34
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Gallus gallus	2.9e-34
BLAST match view associations BLAST with recql recql recql RecQ protein-like (DNA helicase Q1-like)	gene_product from Danio rerio	6.9e-34
BLAST match view associations BLAST with AT1G27880 AT1G27880 AT1G27880	protein from Arabidopsis thaliana	2.6e-33
BLAST match view associations BLAST with Wrn Wrn Wrn Werner syndrome, RecQ helicase-like	gene from Rattus norvegicus	1.5e-31
BLAST match view associations BLAST with RECQSIM RECQSIM RECQSIM RECQ helicase SIM	protein from Arabidopsis thaliana	1.2e-30
BLAST match view associations BLAST with wrn wrn wrn Werner syndrome	gene_product from Danio rerio	7.0e-30
BLAST match view associations BLAST with BA_1505 BA_1505 BA_1505 ATP-dependent DNA helicase RecQ	protein from Bacillus anthracis str. Ames	1.4e-29
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 ATP-dependent DNA helicase Q4	protein from Homo sapiens	2.8e-26
BLAST match view associations BLAST with Recql4 Recql4 Recql4 RecQ protein-like 4	gene from Rattus norvegicus	4.4e-26
BLAST match view associations BLAST with Recql4 Recql4 Recql4 RecQ protein-like 4	protein from Mus musculus	1.0e-25
BLAST match view associations BLAST with RTS RTS RTS RECQL4-helicase-like protein	protein from Xenopus laevis	2.3e-25
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 Uncharacterized protein	protein from Sus scrofa	2.6e-25
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 Uncharacterized protein	protein from Sus scrofa	2.6e-25
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 Uncharacterized protein	protein from Sus scrofa	2.7e-25
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 RECQL4 protein	protein from Bos taurus	7.4e-25
BLAST match view associations BLAST with recql4 recql4 recql4 RecQ4 protein	protein from Xenopus laevis	7.6e-25
BLAST match view associations BLAST with H9KZS5 H9KZS5 H9KZS5 Uncharacterized protein	protein from Gallus gallus	2.6e-24
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Sus scrofa	9.6e-19
BLAST match view associations BLAST with CPS_2945 CPS_2945 CPS_2945 Putative DEAD/DEAH box helicase	protein from Colwellia psychrerythraea 34H	5.3e-18
BLAST match view associations BLAST with CPS_2945 CPS_2945 CPS_2945 putative DEAD/DEAH box helicase	protein from Colwellia psychrerythraea 34H	5.3e-18
BLAST match view associations BLAST with PF14_0278 PF14_0278 PF14_0278 ATP-dependent DNA helicase, putative	gene from Plasmodium falciparum	2.6e-16
BLAST match view associations BLAST with PF14_0278 PF14_0278 PF14_0278 ATP-dependent DNA helicase, putative	protein from Plasmodium falciparum 3D7	2.6e-16
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Sus scrofa	2.8e-16
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	3.6e-15
BLAST match view associations BLAST with RecQ4 RecQ4 RecQ4	protein from Drosophila melanogaster	1.3e-11
BLAST match view associations BLAST with E2RDN3 E2RDN3 E2RDN3 Uncharacterized protein	protein from Canis lupus familiaris	4.6e-08
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy7952
        (444 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|Q6P4G0 - symbol:RECQL5 "ATP-dependent DNA helic...   685  2.0e-72   2
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic...   729  4.1e-72   1
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic...   729  4.1e-72   1
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein...   721  2.9e-71   1
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein...   718  6.1e-71   1
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species...   718  6.1e-71   1
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein...   702  3.3e-69   1
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein...   685  1.9e-67   1
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein...   685  5.4e-67   1
FB|FBgn0027375 - symbol:RecQ5 "homolog of RecQ" species:7...   581  1.6e-55   1
WB|WBGene00004322 - symbol:rcq-5 species:6239 "Caenorhabd...   307  3.9e-54   3
TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37...   529  6.5e-51   1
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd...   482  5.9e-50   2
UNIPROTKB|E1BQ04 - symbol:BLM "Uncharacterized protein" s...   502  1.5e-48   2
UNIPROTKB|Q9DEY9 - symbol:blm "Bloom syndrome protein hom...   518  1.9e-48   1
TAIR|locus:2074429 - symbol:RECQI1 "RECQ helicase l1" spe...   496  2.0e-47   1
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he...   492  5.4e-47   1
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he...   449  8.6e-47   2
UNIPROTKB|E2RS76 - symbol:BLM "Uncharacterized protein" s...   501  1.3e-46   1
TAIR|locus:2197394 - symbol:RECQ4A species:3702 "Arabidop...   480  1.3e-46   2
UNIPROTKB|J9PB86 - symbol:BLM "Uncharacterized protein" s...   501  1.3e-46   1
UNIPROTKB|H0YNU5 - symbol:BLM "Bloom syndrome protein" sp...   499  1.8e-46   1
UNIPROTKB|P54132 - symbol:BLM "Bloom syndrome protein" sp...   499  2.2e-46   1
DICTYBASE|DDB_G0272384 - symbol:DDB_G0272384 "Bloom syndr...   455  2.5e-46   2
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric...   499  2.5e-46   1
DICTYBASE|DDB_G0292130 - symbol:blm "Bloom syndrome prote...   464  3.0e-46   2
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli...   458  4.7e-46   2
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli...   458  4.7e-46   2
ZFIN|ZDB-GENE-070702-5 - symbol:blm "Bloom syndrome" spec...   491  1.6e-45   1
MGI|MGI:1328362 - symbol:Blm "Bloom syndrome, RecQ helica...   487  4.1e-45   1
UNIPROTKB|F1P3V1 - symbol:BLM "Bloom syndrome protein hom...   468  6.6e-44   2
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase...   472  1.5e-43   1
UNIPROTKB|F1ND40 - symbol:BLM "Bloom syndrome protein hom...   468  2.9e-43   1
CGD|CAL0004296 - symbol:SGS1 species:5476 "Candida albica...   442  6.0e-43   2
UNIPROTKB|Q5A5R4 - symbol:SGS1 "Putative uncharacterized ...   442  6.0e-43   2
SGD|S000004802 - symbol:SGS1 "Nucleolar DNA helicase of t...   451  9.4e-43   2
TIGR_CMR|SO_4241 - symbol:SO_4241 "ATP-dependent DNA heli...   451  1.2e-42   1
UNIPROTKB|Q9I920 - symbol:BLM "Bloom syndrome protein hom...   462  1.3e-42   1
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth...   464  1.3e-42   1
RGD|1308810 - symbol:Blm "Bloom syndrome, RecQ helicase-l...   459  1.9e-42   1
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia...   446  4.0e-42   1
UNIPROTKB|F1RX70 - symbol:WRN "Uncharacterized protein" s...   430  1.7e-41   2
UNIPROTKB|I3LC91 - symbol:WRN "Uncharacterized protein" s...   430  2.1e-41   2
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli...   433  3.4e-40   1
UNIPROTKB|O93530 - symbol:wrn "Werner syndrome ATP-depend...   416  4.3e-40   2
WB|WBGene00006944 - symbol:wrn-1 species:6239 "Caenorhabd...   434  1.1e-39   1
UNIPROTKB|O34748 - symbol:recQ "Probable ATP-dependent DN...   421  1.8e-39   1
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot...   432  2.0e-39   1
UNIPROTKB|E1BEE6 - symbol:WRN "Uncharacterized protein" s...   398  2.0e-38   2
UNIPROTKB|Q14191 - symbol:WRN "Werner syndrome ATP-depend...   401  2.1e-38   2
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe...   416  2.6e-38   1
UNIPROTKB|J3KSL7 - symbol:RECQL5 "ATP-dependent DNA helic...   409  3.4e-38   1
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh...   410  5.9e-38   1
UNIPROTKB|F1PZR2 - symbol:WRN "Uncharacterized protein" s...   418  8.6e-38   1
MGI|MGI:109635 - symbol:Wrn "Werner syndrome homolog (hum...   396  1.1e-37   2
UNIPROTKB|F1NAR0 - symbol:F1NAR0 "Uncharacterized protein...   395  1.3e-37   2
UNIPROTKB|F1PZR3 - symbol:WRN "Uncharacterized protein" s...   417  1.3e-37   1
UNIPROTKB|F1PUF8 - symbol:WRN "Uncharacterized protein" s...   417  1.4e-37   1
MGI|MGI:103021 - symbol:Recql "RecQ protein-like" species...   375  3.7e-37   2
UNIPROTKB|Q47WD5 - symbol:CPS_4237 "RecQ domain protein" ...   385  5.4e-37   2
TIGR_CMR|CPS_4237 - symbol:CPS_4237 "RecQ domain protein"...   385  5.4e-37   2
TIGR_CMR|SPO_0107 - symbol:SPO_0107 "ATP-dependent DNA he...   382  1.0e-36   2
ASPGD|ASPL0000072255 - symbol:recQ species:162425 "Emeric...   288  6.7e-36   2
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica...   387  2.1e-35   1
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica...   387  2.1e-35   1
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"...   385  4.5e-35   1
UNIPROTKB|F1SR01 - symbol:RECQL "Uncharacterized protein"...   383  7.4e-35   1
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"...   382  9.4e-35   1
UNIPROTKB|P46063 - symbol:RECQL "ATP-dependent DNA helica...   382  9.6e-35   1
UNIPROTKB|Q8EEK1 - symbol:SO_2380 "ATP-dependent DNA heli...   380  1.6e-34   1
TIGR_CMR|SO_2380 - symbol:SO_2380 "RecQ domain protein" s...   380  1.6e-34   1
UNIPROTKB|F1NPI7 - symbol:RECQL "Uncharacterized protein"...   378  2.9e-34   1
ZFIN|ZDB-GENE-050809-134 - symbol:recql "RecQ protein-lik...   374  6.9e-34   1
TAIR|locus:2029799 - symbol:AT1G27880 species:3702 "Arabi...   339  2.6e-33   2
RGD|1564788 - symbol:Wrn "Werner syndrome, RecQ helicase-...   360  1.5e-31   1
TAIR|locus:2180255 - symbol:RECQSIM "RECQ helicase SIM" s...   229  1.2e-30   2
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe...   251  7.0e-30   2
TIGR_CMR|BA_1505 - symbol:BA_1505 "ATP-dependent DNA heli...   330  1.4e-29   1
UNIPROTKB|O94761 - symbol:RECQL4 "ATP-dependent DNA helic...   202  2.8e-26   2
RGD|1307732 - symbol:Recql4 "RecQ protein-like 4" species...   204  4.4e-26   2
MGI|MGI:1931028 - symbol:Recql4 "RecQ protein-like 4" spe...   209  1.0e-25   2
UNIPROTKB|Q4JNX8 - symbol:RTS "RECQL4-helicase-like prote...   196  2.3e-25   2
UNIPROTKB|F1RSP7 - symbol:RECQL4 "Uncharacterized protein...   198  2.6e-25   2
UNIPROTKB|K7GSZ9 - symbol:RECQL4 "Uncharacterized protein...   198  2.6e-25   2
UNIPROTKB|F1RV44 - symbol:RECQL4 "Uncharacterized protein...   198  2.7e-25   2
UNIPROTKB|A5D786 - symbol:RECQL4 "RECQL4 protein" species...   196  7.4e-25   2
UNIPROTKB|Q33DM4 - symbol:recql4 "RecQ4 protein" species:...   196  7.6e-25   2
UNIPROTKB|H9KZS5 - symbol:H9KZS5 "Uncharacterized protein...   204  2.6e-24   2
UNIPROTKB|F1RMJ3 - symbol:BLM "Uncharacterized protein" s...   251  9.6e-19   1
UNIPROTKB|Q47ZX4 - symbol:CPS_2945 "Putative DEAD/DEAH bo...   248  5.3e-18   1
TIGR_CMR|CPS_2945 - symbol:CPS_2945 "putative DEAD/DEAH b...   248  5.3e-18   1
GENEDB_PFALCIPARUM|PF14_0278 - symbol:PF14_0278 "ATP-depe...   244  2.6e-16   2
UNIPROTKB|Q8ILG5 - symbol:PF14_0278 "ATP-dependent DNA he...   244  2.6e-16   2
UNIPROTKB|F1RMJ2 - symbol:BLM "Uncharacterized protein" s...   229  2.8e-16   1
UNIPROTKB|J3KRM6 - symbol:RECQL5 "ATP-dependent DNA helic...   198  3.6e-15   1
ASPGD|ASPL0000073665 - symbol:AN5092 species:162425 "Emer...   223  8.1e-15   1
POMBASE|SPBCPT2R1.08c - symbol:tlh2 "RecQ type DNA helica...   221  1.7e-14   1
POMBASE|SPAC212.11 - symbol:tlh1 "RecQ type DNA helicase"...   221  1.9e-14   1
FB|FBgn0040290 - symbol:RecQ4 "RecQ4" species:7227 "Droso...   194  1.3e-11   1
UNIPROTKB|E2RDN3 - symbol:E2RDN3 "Uncharacterized protein...   167  4.6e-08   2

WARNING:  Descriptions of 62 database sequences were not reported due to the
          limiting value of parameter V = 100.


>UNIPROTKB|Q6P4G0 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            EMBL:CH471099 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AC087749 HOGENOM:HOG000044388
            IPI:IPI01015246 UniGene:Hs.632229 HGNC:HGNC:9950 HOVERGEN:HBG057065
            ChiTaRS:RECQL5 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
            EMBL:BC063440 IPI:IPI00185769 ProteinModelPortal:Q6P4G0
            STRING:Q6P4G0 PRIDE:Q6P4G0 Ensembl:ENST00000423245 UCSC:uc010dgk.3
            ArrayExpress:Q6P4G0 Bgee:Q6P4G0 Uniprot:Q6P4G0
        Length = 964

 Score = 685 (246.2 bits), Expect = 2.0e-72, Sum P(2) = 2.0e-72
 Identities = 143/318 (44%), Positives = 200/318 (62%)

Query:   111 ISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYV 170
             I+ ++S      +D    ++T +  +  L   +S Q   E K +L +L   KP+ K+LY+
Sbjct:    45 ITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQ---ERKELLADLEREKPQTKILYI 101

Query:   171 TPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIP 230
             TPE A + SF   L  LV  + L+Y+VVDEAHCVS+WGHDFRP Y RLG LR   G++ P
Sbjct:   102 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHA-P 160

Query:   231 IIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIE 290
              +ALTATA P V++D+ + L   KP  +FKT  FR+NLFYDV F +L+ D Y ++K+F  
Sbjct:   161 CVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCL 220

Query:   291 KCLGK--DNKANNCGIIYCRTREHTTDLADALR-RKVNK---H------ERSRVQESFMR 338
             K LG+  D   + CGI+YCRTRE    LA  L  R VN    H      ER+ VQ  +M 
Sbjct:   221 KALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWME 280

Query:   339 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 398
              ++ VI ATISFGMG+D+ NVRFV HW +  S+  YYQESGRAGRDG  S+CR+Y+S + 
Sbjct:   281 EKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 340

Query:   399 KKSLEYVIKTDTSTKREQ 416
             +  + ++I+ + +  +E+
Sbjct:   341 RDQVSFLIRKEVAKLQEK 358

 Score = 66 (28.3 bits), Expect = 2.0e-72, Sum P(2) = 2.0e-72
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query:    33 EQELTAKLKALFGFDSFKCELQKKA 57
             E+ + + LK +FGFDSFK  LQ+ A
Sbjct:    13 ERRVRSTLKKVFGFDSFKTPLQESA 37


>UNIPROTKB|J3KTQ2 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
            GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
            Ensembl:ENST00000578201 Uniprot:J3KTQ2
        Length = 480

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 163/396 (41%), Positives = 231/396 (58%)

Query:    33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTXXXXXXXXXXXXXXXXXI 92
             E+ + + LK +FGFDSFK  LQ+ A   ++    D+FV MPT                 +
Sbjct:    13 ERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPAL----L 68

Query:    93 PPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENK 152
               G   +           +SP+++      +D    ++T +  +  L   +S Q   E K
Sbjct:    69 AKGITIV-----------VSPLIALI----QDQVDHLLTLKVRVSSLNSKLSAQ---ERK 110

Query:   153 AILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFR 212
              +L +L   KP+ K+LY+TPE A + SF   L  LV  + L+Y+VVDEAHCVS+WGHDFR
Sbjct:   111 ELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFR 170

Query:   213 PTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV 272
             P Y RLG LR   G++ P +ALTATA P V++D+ + L   KP  +FKT  FR+NLFYDV
Sbjct:   171 PDYLRLGALRSRLGHA-PCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDV 229

Query:   273 IFDDLLKDSYAHVKEFIEKCLGK--DNKANNCGIIYCRTREHTTDLADALR-RKVNK--- 326
              F +L+ D Y ++K+F  K LG+  D   + CGI+YCRTRE    LA  L  R VN    
Sbjct:   230 QFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAY 289

Query:   327 H------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380
             H      ER+ VQ  +M  ++ VI ATISFGMG+D+ NVRFV HW +  S+  YYQESGR
Sbjct:   290 HAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGR 349

Query:   381 AGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQ 416
             AGRDG  S+CR+Y+S + +  + ++I+ + +  +E+
Sbjct:   350 AGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEK 385


>UNIPROTKB|O94762 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
            evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
            "cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
            evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
            holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
            [GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
            GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
            TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
            EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
            EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
            RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
            UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
            DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
            PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
            Ensembl:ENST00000317905 Ensembl:ENST00000340830
            Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
            KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
            CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
            HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
            HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
            OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
            NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
            Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
            Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
        Length = 991

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 163/396 (41%), Positives = 231/396 (58%)

Query:    33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTXXXXXXXXXXXXXXXXXI 92
             E+ + + LK +FGFDSFK  LQ+ A   ++    D+FV MPT                 +
Sbjct:    13 ERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPAL----L 68

Query:    93 PPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENK 152
               G   +           +SP+++      +D    ++T +  +  L   +S Q   E K
Sbjct:    69 AKGITIV-----------VSPLIALI----QDQVDHLLTLKVRVSSLNSKLSAQ---ERK 110

Query:   153 AILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFR 212
              +L +L   KP+ K+LY+TPE A + SF   L  LV  + L+Y+VVDEAHCVS+WGHDFR
Sbjct:   111 ELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFR 170

Query:   213 PTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV 272
             P Y RLG LR   G++ P +ALTATA P V++D+ + L   KP  +FKT  FR+NLFYDV
Sbjct:   171 PDYLRLGALRSRLGHA-PCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDV 229

Query:   273 IFDDLLKDSYAHVKEFIEKCLGK--DNKANNCGIIYCRTREHTTDLADALR-RKVNK--- 326
              F +L+ D Y ++K+F  K LG+  D   + CGI+YCRTRE    LA  L  R VN    
Sbjct:   230 QFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAY 289

Query:   327 H------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380
             H      ER+ VQ  +M  ++ VI ATISFGMG+D+ NVRFV HW +  S+  YYQESGR
Sbjct:   290 HAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGR 349

Query:   381 AGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQ 416
             AGRDG  S+CR+Y+S + +  + ++I+ + +  +E+
Sbjct:   350 AGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEK 385


>UNIPROTKB|E1BKM5 [details] [associations]
            symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
            "DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
            EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
            UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
            KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
        Length = 987

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 166/410 (40%), Positives = 235/410 (57%)

Query:    33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTXXXXXXXXXXXXXXXXXI 92
             E+ + + LK +FGFDSFK  LQ+KAI  ++    D+FV MPT                 +
Sbjct:    12 ERRVRSTLKKVFGFDSFKTPLQEKAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAL----L 67

Query:    93 PPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENK 152
               G   +           +SP+++      +D    ++  +  +  L   +S Q   E K
Sbjct:    68 AKGITIV-----------VSPLIALI----QDQVDHLLALKVRVSSLNSKLSVQ---ERK 109

Query:   153 AILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFR 212
              +L +L   KP+ KLLY+TPE A + SF   L  LV  + L+Y+VVDEAHCVS+WGHDFR
Sbjct:   110 ELLSDLEQEKPQTKLLYITPEMAASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFR 169

Query:   213 PTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV 272
             P Y RLG LR    ++ P +ALTATA P V++D+ + L   +P   FKT  FR+NLFYDV
Sbjct:   170 PDYLRLGALRSRLADA-PCVALTATATPQVREDVFAALHLKQPVATFKTPCFRANLFYDV 228

Query:   273 IFDDLLKDSYAHVKEFIEKCLGK--DNKANNCGIIYCRTREHTTDLADALR-RKVNK--- 326
              F +LL D Y ++++F  K LG+  D   + CGIIYCRTRE    LA  L  R VN    
Sbjct:   229 QFKELLPDPYGNLRDFCLKALGQKADKGLSGCGIIYCRTREACEQLATELSYRGVNAKAY 288

Query:   327 H------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380
             H      ER+ VQ  +M  ++ VI ATISFGMG+D+ NVRFV HW +  S+  YYQESGR
Sbjct:   289 HAGLKAPERTLVQNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGR 348

Query:   381 AGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEY 430
             AGRDG  S+CR+Y+S   +  + ++I+ + +  +E+   K  +  ++L +
Sbjct:   349 AGRDGKPSWCRLYYSRSDRDQVSFLIRKEVAKLQEKRGNKASDKAAVLAF 398


>UNIPROTKB|I3LFW3 [details] [associations]
            symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
            "DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
            GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
            Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
        Length = 432

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 163/396 (41%), Positives = 230/396 (58%)

Query:    33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTXXXXXXXXXXXXXXXXXI 92
             E+ + + LK +FGFDSFK  LQ+ AI  ++    D+FV MPT                 +
Sbjct:     9 ERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAL----L 64

Query:    93 PPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENK 152
               G   +           ISP+++      +D    ++  +  +  L   +S Q   E K
Sbjct:    65 AKGITIV-----------ISPLIALI----QDQVDHLLALKIHVCSLNSKLSAQ---ERK 106

Query:   153 AILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFR 212
              +L +L   KPR KLLY+TPE A + SF   L+ L+  + L+Y+VVDEAHCVS+WGHDFR
Sbjct:   107 ELLSDLEQEKPRTKLLYITPEMAASASFQPTLKSLLARHLLSYLVVDEAHCVSQWGHDFR 166

Query:   213 PTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV 272
             P Y RLG LR    ++ P +ALTATA   V++D+ + L   +P   FKT  FR+NLFYDV
Sbjct:   167 PDYLRLGALRSRLAHA-PCVALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDV 225

Query:   273 IFDDLLKDSYAHVKEFIEKCLGK--DNKANNCGIIYCRTREHTTDLADALR-RKVNK--- 326
              F +LL D Y ++++F  K LG+  D   + CGI+YCRTRE    LA  L  R VN    
Sbjct:   226 QFKELLSDPYGNLRDFCLKALGQKADKGLSGCGIVYCRTREACEQLAIELSARGVNAKAY 285

Query:   327 H------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380
             H      ER+ VQ  +M G++ VI ATISFGMG+D+ NVRFV HW +  S+  YYQESGR
Sbjct:   286 HAGLKAAERTLVQNEWMEGKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGR 345

Query:   381 AGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQ 416
             AGRDG  S+CR+Y+S + +  + ++I+ + +  +E+
Sbjct:   346 AGRDGRPSWCRLYYSRNDRDQVSFLIRKEVAKLQEK 381


>RGD|1310823 [details] [associations]
            symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
            holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
            evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
            GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
            Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
            RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
            GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
        Length = 973

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 165/411 (40%), Positives = 238/411 (57%)

Query:    33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTXXXXXXXXXXXXXXXXXI 92
             E+ + + LK +FGFDSFK  LQ+ AI  ++    D+FV MPT                 +
Sbjct:    13 ERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAV----L 68

Query:    93 PPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENK 152
               G   +           +SP+++      +D    ++  +  +  L   +S Q   E K
Sbjct:    69 AKGITIV-----------VSPLIALI----QDQVDHLLALKVQVSSLNSKLSVQ---ERK 110

Query:   153 AILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFR 212
              +L +L   KPR KLLY+TPE A + SF   L  L+  N L+Y+VVDEAHCVS+WGHDFR
Sbjct:   111 ELLSDLERDKPRTKLLYITPEMAASASFQPTLNSLLSRNLLSYLVVDEAHCVSQWGHDFR 170

Query:   213 PTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV 272
             P Y RLG LR    ++ P +ALTATA P V++D+ + L   +P   FKT  FR+NLFYDV
Sbjct:   171 PDYLRLGALRSRLAHA-PCVALTATATPQVQEDVFAALHLKQPVASFKTPCFRANLFYDV 229

Query:   273 IFDDLLKDSYAHVKEFIEKCLGK--DN-KANNCGIIYCRTREHTTDLADALR-RKVNK-- 326
              F +L+ D Y ++++F  K LG+  DN  ++ CGI+YCRTRE    LA  L  R VN   
Sbjct:   230 QFKELIPDVYGNLRDFCLKALGQKADNGSSSGCGIVYCRTREACEQLAIELSSRGVNAKA 289

Query:   327 -H------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESG 379
              H      ER++VQ  +M  ++ VI ATISFGMG+D+ NVRFV HW +  S+  YYQESG
Sbjct:   290 YHAGLKASERTQVQNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESG 349

Query:   380 RAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEY 430
             RAGRDG  S+CR+Y+S + +  + ++I+ + +  +E+   K  +  ++L +
Sbjct:   350 RAGRDGKPSWCRLYYSRNDRDQVSFLIRKELAKLQEKRGNKPSDKATLLAF 400


>UNIPROTKB|F1PAG8 [details] [associations]
            symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
            OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
            Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
            Uniprot:F1PAG8
        Length = 989

 Score = 702 (252.2 bits), Expect = 3.3e-69, P = 3.3e-69
 Identities = 164/411 (39%), Positives = 234/411 (56%)

Query:    33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTXXXXXXXXXXXXXXXXXI 92
             E+ + + LK +FGFDSFK  LQ+ A   ++    D+FV MPT                 +
Sbjct:     9 ERRVRSTLKKVFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPAL----L 64

Query:    93 PPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENK 152
               G   +           +SP+++      +D    ++  +  +  L   +S Q   E K
Sbjct:    65 AKGITIV-----------VSPLIALI----QDQVDHLLALKVRVSSLNSKLSAQ---EKK 106

Query:   153 AILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFR 212
              +L +L   KP+ KLLY+TPE A + SF   L  LV  + L+Y+VVDEAHCVS+WGHDFR
Sbjct:   107 ELLSDLEREKPQTKLLYITPEMAASPSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFR 166

Query:   213 PTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV 272
             P Y RLG LR    ++ P IALTATA   V++D+ + L   +P   FKT  FR+NLFYDV
Sbjct:   167 PDYLRLGTLRSRLAHA-PCIALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDV 225

Query:   273 IFDDLLKDSYAHVKEFIEKCLG-KDNKA--NNCGIIYCRTREHTTDLADALR-RKVNK-- 326
              F +LL D Y ++++F  K LG K +K   + CGI+YCRTRE    LA  L  R VN   
Sbjct:   226 QFKELLSDPYGNLRDFCLKALGQKADKGLLSGCGIVYCRTREACEQLATELSYRGVNAKA 285

Query:   327 -H------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESG 379
              H      ER+ VQ  +M  ++ VI ATISFGMG+D+ NVRFV HW +  S+  YYQESG
Sbjct:   286 YHAGLKASERTLVQNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESG 345

Query:   380 RAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEY 430
             RAGRDG  S+CR+Y+S + +  + ++I+ + +  +E+   K  +  ++L +
Sbjct:   346 RAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKASDKAAILAF 396


>UNIPROTKB|F1NT69 [details] [associations]
            symbol:F1NT69 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
            evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
            ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
            ArrayExpress:F1NT69 Uniprot:F1NT69
        Length = 451

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 162/390 (41%), Positives = 218/390 (55%)

Query:    40 LKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTXXXXXXXXXXXXXXXXXIPPGADFI 99
             L  +FGF+SFK  LQ+ A   ++    D+FV MPT                 +  G   +
Sbjct:    25 LGKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAV----LAVGITIV 80

Query:   100 LNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELR 159
                        ISP+++      +D    ++  +     L   +S Q   E K IL +L 
Sbjct:    81 -----------ISPLIALI----QDQVDHLLALKIKACSLNSKLSAQ---EKKTILADLA 122

Query:   160 LVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLG 219
               KP+IKLLY+TPE A   SF   L  LV  N L+Y+++DEAHCVS+WGHDFRP Y RLG
Sbjct:   123 SEKPQIKLLYITPEMAAASSFQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLG 182

Query:   220 ELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLK 279
              LR    N+ P +ALTATA   V+ DI++ LK  +P   FKT  FRSNLFYDV F +LL 
Sbjct:   183 TLRTRIPNT-PCVALTATATKQVQDDIVTALKLKQPLATFKTPCFRSNLFYDVQFKELLT 241

Query:   280 DSYAHVKEFIEKCLGKDNKA---NNCGIIYCRTREHTTDLADALRRKVNK----H----- 327
             D YA++K+F  K L   N     + CGI+YCR R+    LA  L  +  K    H     
Sbjct:   242 DPYANLKDFCLKALEVKNTTGVYSGCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKA 301

Query:   328 -ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL 386
              +R+ VQ  +M  +I VI ATISFGMG+D+ NVRFV HW +  S+  YYQESGRAGRDG 
Sbjct:   302 ADRTSVQNEWMEEKIPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGK 361

Query:   387 QSYCRIYHSEHSKKSLEYVIKTDTSTKREQ 416
              S CR+Y+S + +  + ++IK + S  +E+
Sbjct:   362 PSCCRLYYSRNDRDQVSFLIKKELSKIQEK 391


>UNIPROTKB|F1NWK5 [details] [associations]
            symbol:F1NWK5 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
            evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
            OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
            Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
        Length = 1023

 Score = 685 (246.2 bits), Expect = 5.4e-67, P = 5.4e-67
 Identities = 162/390 (41%), Positives = 218/390 (55%)

Query:    40 LKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTXXXXXXXXXXXXXXXXXIPPGADFI 99
             L  +FGF+SFK  LQ+ A   ++    D+FV MPT                 +  G   +
Sbjct:    25 LGKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAV----LAVGITIV 80

Query:   100 LNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELR 159
                        ISP+++      +D    ++  +     L   +S Q   E K IL +L 
Sbjct:    81 -----------ISPLIALI----QDQVDHLLALKIKACSLNSKLSAQ---EKKTILADLA 122

Query:   160 LVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLG 219
               KP+IKLLY+TPE A   SF   L  LV  N L+Y+++DEAHCVS+WGHDFRP Y RLG
Sbjct:   123 SEKPQIKLLYITPEMAAASSFQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLG 182

Query:   220 ELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLK 279
              LR    N+ P +ALTATA   V+ DI++ LK  +P   FKT  FRSNLFYDV F +LL 
Sbjct:   183 TLRTRIPNT-PCVALTATATKQVQDDIVTALKLKQPLATFKTPCFRSNLFYDVQFKELLT 241

Query:   280 DSYAHVKEFIEKCLGKDNKA---NNCGIIYCRTREHTTDLADALRRKVNK----H----- 327
             D YA++K+F  K L   N     + CGI+YCR R+    LA  L  +  K    H     
Sbjct:   242 DPYANLKDFCLKALEVKNTTGVYSGCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKA 301

Query:   328 -ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL 386
              +R+ VQ  +M  +I VI ATISFGMG+D+ NVRFV HW +  S+  YYQESGRAGRDG 
Sbjct:   302 ADRTSVQNEWMEEKIPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGK 361

Query:   387 QSYCRIYHSEHSKKSLEYVIKTDTSTKREQ 416
              S CR+Y+S + +  + ++IK + S  +E+
Sbjct:   362 PSCCRLYYSRNDRDQVSFLIKKELSKIQEK 391


>FB|FBgn0027375 [details] [associations]
            symbol:RecQ5 "homolog of RecQ" species:7227 "Drosophila
            melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003678 "DNA
            helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
            evidence=ISS] [GO:0017116 "single-stranded DNA-dependent
            ATP-dependent DNA helicase activity" evidence=IDA] [GO:0003924
            "GTPase activity" evidence=IDA] [GO:0005525 "GTP binding"
            evidence=IDA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=IDA;IMP] [GO:0045930 "negative regulation of
            mitotic cell cycle" evidence=IMP] [GO:0010165 "response to X-ray"
            evidence=IDA] [GO:0045002 "double-strand break repair via
            single-strand annealing" evidence=IMP] [GO:0090007 "regulation of
            mitotic anaphase" evidence=IDA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003924 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 GO:GO:0010165 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0045002 GO:GO:0045930
            TIGRFAMs:TIGR00614 GO:GO:0090007 GO:GO:0017116 HSSP:P15043
            FlyBase:FBgn0027375 EMBL:AB031086 ProteinModelPortal:Q9U5E0
            PRIDE:Q9U5E0 InParanoid:Q9U5E0 ArrayExpress:Q9U5E0 Bgee:Q9U5E0
            Uniprot:Q9U5E0
        Length = 1058

 Score = 581 (209.6 bits), Expect = 1.6e-55, P = 1.6e-55
 Identities = 158/429 (36%), Positives = 231/429 (53%)

Query:    33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTXXXXXXXXXXXXXXXXXI 92
             E  +   LK  FG   FK +LQ+KA++  + +  D++VSMPT                  
Sbjct:     4 ESAVHEALKKHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLC----------- 52

Query:    93 PPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENK 152
                  F L G + S N  I+ + S      +D    +   +     L   +S  TK  ++
Sbjct:    53 -----FQLPG-LMSENQ-ITIVFSPLLALIKDQIDHLTKLKVPADSLNSKMS--TKERDR 103

Query:   153 AILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFR 212
              I++ L+ V+  +K LY+TPE+A T+ F  LLQ L ++NKLAY  VDEAHCVS+WGHDFR
Sbjct:   104 VIMD-LKAVRTNLKFLYITPEQAATKFFQDLLQTLHKHNKLAYFAVDEAHCVSQWGHDFR 162

Query:   213 PTYRRLGELRQFTGNSIPI-IALTATAEPS---VKQDIIS--VLKFNKPYKVFKTSTFRS 266
             P Y +LGELR    + I + +  TA+ E      KQ  +   V +F+ P   F+ + F  
Sbjct:   163 PDYLKLGELRSKYSDVIWLALTATASREVKEDIYKQLRLHQPVAQFSTPS--FRKNLFYD 220

Query:   267 NLFYDVIFDDL--LKDSYAHV----KEFIEKCLGKDNKANNCGIIYCRTREHTTDLADAL 320
              ++ + I DD   L D   H     KEF  K   K  +   CGI+YCRTR+    +A  +
Sbjct:   221 IVYKNSIEDDFQHLADFARHCLGNPKEF--KDTPKPQRG--CGIVYCRTRDQVERMAIGV 276

Query:   321 RRK----VNKH------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSS 370
              ++    V  H      ER+ VQE++MRG+  +I AT SFGMG+D+ +VRFV+HW +P +
Sbjct:   277 TKQGIGAVAYHAGLKTGERTEVQEAWMRGDQPIICATNSFGMGVDKPSVRFVIHWDVPQN 336

Query:   371 IPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKR-----EQL-ELKFKNY 424
             + AYYQESGRAGRDGLQSYCR+Y+     +S+ ++++ D    R     E L E   K +
Sbjct:   337 VAAYYQESGRAGRDGLQSYCRLYYGREDVRSIRFLLQNDAHRARGRGDKELLTERAIKQF 396

Query:   425 LSMLEYCEQ 433
               + E+CE+
Sbjct:   397 EKITEFCER 405


>WB|WBGene00004322 [details] [associations]
            symbol:rcq-5 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0006974 "response to DNA damage stimulus" evidence=IMP]
            [GO:0008340 "determination of adult lifespan" evidence=IMP]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0008340 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006974 GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            EMBL:Z38112 HSSP:P15043 KO:K10902 PIR:T20430 RefSeq:NP_497810.1
            ProteinModelPortal:Q19046 SMR:Q19046 PaxDb:Q19046
            EnsemblMetazoa:E03A3.2 GeneID:175522 KEGG:cel:CELE_E03A3.2
            UCSC:E03A3.2 CTD:175522 WormBase:E03A3.2 HOGENOM:HOG000021815
            InParanoid:Q19046 OMA:AWAEIFN NextBio:888512 Uniprot:Q19046
        Length = 809

 Score = 307 (113.1 bits), Expect = 3.9e-54, Sum P(3) = 3.9e-54
 Identities = 83/222 (37%), Positives = 110/222 (49%)

Query:   108 NGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKL 167
             +G I+ ++S      +D  +S+   R  +   E + S  T  E   I+ EL   KP I++
Sbjct:   218 HGGITVVISPLIALMKDQISSLK--RKGI-PCETLNSTLTTVERSRIMGELAKEKPTIRM 274

Query:   168 LYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGN 227
             LY+T E   T+    LL  L   + L YIVVDEAHCV++WGHDFRP Y  LG LR     
Sbjct:   275 LYLTAEGVATDGTKKLLNGLANRDVLRYIVVDEAHCVTQWGHDFRPDYLTLGSLRDVCPG 334

Query:   228 SIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYD-----VIFDDLLKDSY 282
              +P +ALTATA    + DI   LK   P + FK+ T+R NLFYD      I   L  D+ 
Sbjct:   335 -VPWVALTATANAKAQDDIAFQLKLRNP-ESFKSGTYRDNLFYDNHMASFITKCLTVDAK 392

Query:   283 AHVKEFI--EKCLGKDNKANNCG--IIYCRTREHTTDLADAL 320
                      EK     NK    G  I+YCR+R     +A  L
Sbjct:   393 TSSSNLTKHEKAERSQNKKTFTGSAIVYCRSRNECGQVAKML 434

 Score = 275 (101.9 bits), Expect = 3.9e-54, Sum P(3) = 3.9e-54
 Identities = 64/169 (37%), Positives = 94/169 (55%)

Query:   290 EKCLGKDNKANNCG--IIYCRTREHTTDLADALR----------RKVNKHERSRVQESFM 337
             EK     NK    G  I+YCR+R     +A  L             + K +R+ VQE +M
Sbjct:   402 EKAERSQNKKTFTGSAIVYCRSRNECGQVAKMLEIAGIPAMAYHAGLGKKDRNEVQEKWM 461

Query:   338 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH 397
               EI V+ AT++FGMGID+ +VR V+HW    ++  YYQE+GRAGRDG +SYCRIY+S+ 
Sbjct:   462 NNEIPVVAATVAFGMGIDKPDVRAVIHWSPSQNLAGYYQEAGRAGRDGKRSYCRIYYSKQ 521

Query:   398 SKKSLEYVIKTDTSTKREQL----------ELKFKNYLS----MLEYCE 432
              K +L +++  + +  RE+           E++ K+  +    MLEYCE
Sbjct:   522 DKNALNFLVSGELAKLREKAKKNNAEGEKAEMQIKSIQTGLAKMLEYCE 570

 Score = 65 (27.9 bits), Expect = 3.9e-54, Sum P(3) = 3.9e-54
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query:    20 TGNQQDRKGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             TG +  R G  + E+     L+ LF    ++  LQ +AI  IL R  D++VS+PT
Sbjct:   151 TGERLIR-GQDIIERRDKVFLE-LFCHKKYRSRLQMQAINCILKRKCDVYVSLPT 203


>TAIR|locus:2127998 [details] [associations]
            symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
            thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
            [GO:0009378 "four-way junction helicase activity" evidence=IDA]
            [GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
            "3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
            GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
            HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
            IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
            UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
            PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
            KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
            InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
            ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
        Length = 713

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 117/304 (38%), Positives = 174/304 (57%)

Query:   140 ELIVSGQ-TKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVV 198
             E + S Q T  +NK I E+L   KP ++LLYVTPE   T+ F   L+ L     L  I +
Sbjct:   104 EYLSSTQATHVKNK-IHEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLIAI 162

Query:   199 DEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258
             DEAHC+S WGHDFRP+YR+L  LR    + +P++ALTATA P V++D+I  L    P  V
Sbjct:   163 DEAHCISSWGHDFRPSYRQLSTLRDSLAD-VPVLALTATAAPKVQKDVIDSLNLRNPL-V 220

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLA- 317
              K+S  R N+FY+V + DLL ++Y  +   ++ C       N C IIYC  R    DL+ 
Sbjct:   221 LKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLKSC------GNICAIIYCLERTTCDDLSV 274

Query:   318 ---------DALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMP 368
                       A    +N   RS V + ++  +  +I AT++FGMGID+++VR V H+ +P
Sbjct:   275 HLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIP 334

Query:   369 SSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSML 428
              S+ ++YQESGRAGRD L S   +Y+    +K +EY+++   + K    +    ++  ++
Sbjct:   335 KSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENKKSSSSKKPTSDFEQIV 394

Query:   429 EYCE 432
              YCE
Sbjct:   395 TYCE 398


>WB|WBGene00001865 [details] [associations]
            symbol:him-6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0006260 "DNA replication"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0051307 "meiotic chromosome separation" evidence=IMP]
            [GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
            "chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
            evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
            "reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
            damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0043066 "negative regulation of apoptotic
            process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
            GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
            RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
            SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
            PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
            KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
            InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
            GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            Uniprot:O18017
        Length = 988

 Score = 482 (174.7 bits), Expect = 5.9e-50, Sum P(2) = 5.9e-50
 Identities = 119/291 (40%), Positives = 163/291 (56%)

Query:   154 ILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFR 212
             I  EL    P IKLLYVTPE+ + +   + +   L R   LA  V+DEAHCVS+WGHDFR
Sbjct:   329 IYAELGSGNPSIKLLYVTPEKISASGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFR 388

Query:   213 PTYRRLGELRQFTGNS-IPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYD 271
             P Y +L  LR+   N  +PIIALTATA P +  D    LK     K+F +S  R NL YD
Sbjct:   389 PDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQNS-KLFISSFVRDNLKYD 447

Query:   272 VIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREH--TTDL--------ADALR 321
             +I       S  +V   +EK   K       GI+YC +R+   T  +        A+   
Sbjct:   448 LI--PKAARSLINV---VEKM--KQLYPGKSGIVYCLSRKECETVQMMLTKAGLSAEVYH 500

Query:   322 RKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRA 381
               +N + R  VQ S++  + +VI ATI+FGMGID+ +VRFV+H+ +P SI  YYQE+GRA
Sbjct:   501 AGLNDNLRVSVQRSWIANKFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRA 560

Query:   382 GRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
             GRDG+ SYC + +S H    L  +I+   +T   +  +   N L ++ YCE
Sbjct:   561 GRDGMPSYCLMLYSYHDSIRLRRMIEEGNTTTGVR-SMHLNNVLQVVAYCE 610

 Score = 74 (31.1 bits), Expect = 5.9e-50, Sum P(2) = 5.9e-50
 Identities = 20/46 (43%), Positives = 26/46 (56%)

Query:    29 GKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             G    +EL   LK+ FGF+ F+   QK+ I   L+  HD FV MPT
Sbjct:   228 GADMNKELYDTLKSKFGFNQFR-HRQKQCILSTLMG-HDTFVLMPT 271


>UNIPROTKB|E1BQ04 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            [GO:0051782 "negative regulation of cell division" evidence=IEA]
            [GO:0051259 "protein oligomerization" evidence=IEA] [GO:0051098
            "regulation of binding" evidence=IEA] [GO:0046641 "positive
            regulation of alpha-beta T cell proliferation" evidence=IEA]
            [GO:0046632 "alpha-beta T cell differentiation" evidence=IEA]
            [GO:0045950 "negative regulation of mitotic recombination"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0031297 "replication fork processing"
            evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0016363
            "nuclear matrix" evidence=IEA] [GO:0010165 "response to X-ray"
            evidence=IEA] [GO:0009378 "four-way junction helicase activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005657 "replication fork"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=IEA] [GO:0002039 "p53
            binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
            evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
            [GO:0000781 "chromosome, telomeric region" evidence=IEA]
            [GO:0000729 "DNA double-strand break processing" evidence=IEA]
            [GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
            "bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
            GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
            GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000733 OMA:NANDQAI GO:GO:0000800
            GO:GO:0045120 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
            GO:GO:0051782 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
            GO:GO:0031297 EMBL:DAAA02052171 IPI:IPI01003766
            Ensembl:ENSBTAT00000027057 Uniprot:E1BQ04
        Length = 1417

 Score = 502 (181.8 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
 Identities = 122/299 (40%), Positives = 175/299 (58%)

Query:   148 KTENKAILEELRLVK--PRIKLLYVTPERAVTES-FHYLLQHLVRYNKLAYIVVDEAHCV 204
             KT+++A    L+L K  P IKLLYVTPE+    +     L++L     LA  V+DEAHCV
Sbjct:   741 KTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCV 800

Query:   205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF 264
             S+WGHDFRP Y+R+  LRQ    S+P++ALTATA P V++DI++ LK  +P +VF  S  
Sbjct:   801 SQWGHDFRPDYKRMNILRQ-KFPSVPVMALTATANPRVQKDILTQLKILRP-QVFSMSFN 858

Query:   265 RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK- 323
             R NL Y V+     K ++  + E+I K     +  ++ GIIYC +R     +A+ L+   
Sbjct:   859 RHNLKYYVLPKKPKKVAFDCL-EWIRK-----HHPHDSGIIYCLSRRECDTMAETLQNDG 912

Query:   324 ---------VNKHERSRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIPA 373
                      ++   R  VQ  ++  +   VI ATI+FGMGID+ +VRFV+H  +P S+  
Sbjct:   913 LAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEG 972

Query:   374 YYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
             YYQESGRAGRDG  S+C ++++ H    L+ +I  +    R   E  F N  SM+ YCE
Sbjct:   973 YYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEKDGNRHTRETHFNNLYSMVHYCE 1031

 Score = 47 (21.6 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
 Identities = 19/70 (27%), Positives = 32/70 (45%)

Query:     3 EGESKDASSAVGKSSSLTGNQQDRKGGKVSEQELTAKLKALFGFD-----SFKCELQKKA 57
             EG +  +SS++  SS L       K   +S  E  +KLK +         S  CE ++ +
Sbjct:   307 EGMTSTSSSSLKCSSMLKDLDTSDKKHSLSTSEDLSKLKEMATQQPNQETSTSCEARQTS 366

Query:    58 IRHILLRTHD 67
             ++  L+R  D
Sbjct:   367 LQQQLIRVMD 376


>UNIPROTKB|Q9DEY9 [details] [associations]
            symbol:blm "Bloom syndrome protein homolog" species:8355
            "Xenopus laevis" [GO:0000729 "DNA double-strand break processing"
            evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003677 GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOVERGEN:HBG004850 GO:GO:0000729
            CTD:641 EMBL:AF307841 RefSeq:NP_001079095.1 UniGene:Xl.706
            ProteinModelPortal:Q9DEY9 GeneID:373628 KEGG:xla:373628
            Xenbase:XB-GENE-982565 Uniprot:Q9DEY9
        Length = 1364

 Score = 518 (187.4 bits), Expect = 1.9e-48, P = 1.9e-48
 Identities = 121/303 (39%), Positives = 176/303 (58%)

Query:   142 IVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTES-FHYLLQHLVRYNKLAYIVVDE 200
             +   +T  E  +I  +L    P IKLLYVTPE+    +     +++L     LA  V+DE
Sbjct:   689 LTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEKVCASTRLISTMENLYERQLLARFVIDE 748

Query:   201 AHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK 260
             AHCVS+WGHDFRP Y+RL  LRQ    S+P++ALTATA P VK+DI++ LK  KP ++F 
Sbjct:   749 AHCVSQWGHDFRPDYKRLNVLRQ-KFQSVPMMALTATANPRVKKDILNQLKMTKP-QIFT 806

Query:   261 TSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADAL 320
              S  R NL Y+V+     + +   V E+I+K     +  N+ GIIYC +R     +AD L
Sbjct:   807 MSFNRDNLKYEVLPKKPKRVALDCV-EWIKK-----HHPNDSGIIYCLSRHECDTMADTL 860

Query:   321 RRK----VNKH------ERSRVQESFM-RGEINVITATISFGMGIDRQNVRFVVHWGMPS 369
             +++    +  H       R  VQ  ++ + +  VI ATI+FGMGID+ +VR+V+H  +P 
Sbjct:   861 QKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAFGMGIDKPDVRYVIHASLPK 920

Query:   370 SIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLE 429
             S+  YYQESGRAGRDG  S+C +++S H    +  +I+ +        +  F N  SM+ 
Sbjct:   921 SVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEKDGNSHTKQTHFNNLYSMVH 980

Query:   430 YCE 432
             YCE
Sbjct:   981 YCE 983


>TAIR|locus:2074429 [details] [associations]
            symbol:RECQI1 "RECQ helicase l1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0042631 "cellular response to water deprivation" evidence=IEP]
            [GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
            "DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
            TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
            EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
            UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
            EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
            TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
            ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
        Length = 606

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 119/301 (39%), Positives = 170/301 (56%)

Query:   144 SGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAH 202
             S QT ++  A+L+ELR   P  KLLYVTPE+ A + SF   L+ L R   LA  VVDEAH
Sbjct:   279 SQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSFLETLRCLDRKGLLAGFVVDEAH 338

Query:   203 CVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTS 262
             CVS+WGHDFRP YR LG L+Q     +P++ALTATA  SV QD++  L+  +   V K S
Sbjct:   339 CVSQWGHDFRPDYRELGCLKQ-NFPRVPVMALTATATESVCQDVLKSLRIPRA-PVLKMS 396

Query:   263 TFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR 322
               R NL Y+VI     K+    ++E +     +D   +  GI+YC ++    D+A  L  
Sbjct:   397 FDRINLKYEVIVKT--KEPLKQLQELL-----RDRFKDQSGIVYCLSKSECVDVAKFLNE 449

Query:   323 K-----VNKH------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSI 371
             K     V  H      +R  VQ  +  GE+ ++ ATI+FGMGID+ +VRFV+H  +  ++
Sbjct:   450 KCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAV 509

Query:   372 PAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYC 431
              +YYQESGRAGRDGLQ+ C   + +     +  +++       ++ +        M +YC
Sbjct:   510 ESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLRNGQGRNMDRFKSAMAQAKKMQQYC 569

Query:   432 E 432
             E
Sbjct:   570 E 570


>TIGR_CMR|CBU_0472 [details] [associations]
            symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
            species:227377 "Coxiella burnetii RSA 493" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
            GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
            HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
            RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
            GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
            ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
            Uniprot:Q83E59
        Length = 601

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 120/290 (41%), Positives = 168/290 (57%)

Query:   147 TKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSE 206
             T TE +A     RL    + LLY+ PER +TESF   L  L R  KLA + +DEAHCVS+
Sbjct:    90 TLTEAEARKNLARLHNNELDLLYIAPERLMTESF---LSRL-REVKLALVAIDEAHCVSQ 145

Query:   207 WGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRS 266
             WGHDFRP Y RLGELR++    +P IALTATA+   +QDI+  L+  K   V   S  R 
Sbjct:   146 WGHDFRPEYLRLGELREYFPK-VPFIALTATADKQTRQDILQRLRLTKA-NVHIASFNRP 203

Query:   267 NLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--- 323
             N+ Y ++     + SY  +  F+     KD KA+  GI+YC +R    ++A  L+     
Sbjct:   204 NIRYTLLEK---QKSYNQLVNFL-----KDRKAD-FGIVYCLSRNRVEEVAAKLQADGYS 254

Query:   324 -VNKH------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQ 376
              +  H      +R + QE+F R ++N+I ATI+FGMGID+ NVRFVVH+ +P  I  YYQ
Sbjct:   255 ALPYHAGLPAAQRGKTQEAFQRDDVNIIVATIAFGMGIDKPNVRFVVHYDLPKHIEGYYQ 314

Query:   377 ESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLS 426
             E+GRAGRDGL S   + +       ++  I+   +  R+++EL   N +S
Sbjct:   315 ETGRAGRDGLPSEALLLYGLRDIAVIKSFIENGNNEIRKRIELHKLNCMS 364


>TIGR_CMR|GSU_0898 [details] [associations]
            symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
            HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
            RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
            GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
            ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
            Uniprot:Q74ER2
        Length = 603

 Score = 449 (163.1 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 117/312 (37%), Positives = 176/312 (56%)

Query:   150 ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
             E++ +L   RL    + LLYV PER +T++F   L+ L R   +A   +DEAHCVS+WGH
Sbjct:    95 ESRRVLA--RLHGGELDLLYVAPERLMTDAF---LERL-REIPIALFAIDEAHCVSQWGH 148

Query:   210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269
             DFRP Y  LG LR     ++P+IALTATA+   + DI++ L   +  ++F T   R N+ 
Sbjct:   149 DFRPEYVELGRLRGLFP-TVPMIALTATADAQTRGDIVTRLGL-RDAEMFVTGFDRPNIR 206

Query:   270 YDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-VNK-- 326
             Y V+     +  +  ++EF+        +    GI+YC +R+   ++A+ LR   V    
Sbjct:   207 YSVLEK---QKPFRQLEEFLA------TRPREAGIVYCLSRKRVEEVAEKLRAAGVEAGA 257

Query:   327 -H------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESG 379
              H      ERSRVQE+F+R +I V+ AT++FGMGID+ NVRFVVH+ +P +I +YYQE+G
Sbjct:   258 YHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPNVRFVVHYDLPKNIESYYQETG 317

Query:   380 RAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLEL-KFKNYLSMLE--YCEQ--- 433
             RAGRDGL +   +            +I++  + ++ ++EL K    +   E   C +   
Sbjct:   318 RAGRDGLPAEALLLFGYGDIPVSRSLIESGGNPEQVRIELHKLNAMVGFAEALVCRRRAL 377

Query:   434 -GYFLVILVFPC 444
              GYF   L  PC
Sbjct:   378 LGYFGERLEEPC 389

 Score = 58 (25.5 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query:    35 ELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             E  A L+ +FG+ SF+   Q++ +  +  R  D FV MPT
Sbjct:     4 ETLAVLRTVFGYRSFR-PFQEEIVDRVA-RGGDTFVLMPT 41


>UNIPROTKB|E2RS76 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0051880 "G-quadruplex DNA binding"
            evidence=IEA] [GO:0051782 "negative regulation of cell division"
            evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
            [GO:0051098 "regulation of binding" evidence=IEA] [GO:0046641
            "positive regulation of alpha-beta T cell proliferation"
            evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
            evidence=IEA] [GO:0045950 "negative regulation of mitotic
            recombination" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0045120
            "pronucleus" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=IEA] [GO:0031297 "replication fork
            processing" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
            [GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010165 "response to
            X-ray" evidence=IEA] [GO:0009378 "four-way junction helicase
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005657 "replication
            fork" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0002039
            "p53 binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
            evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
            [GO:0000781 "chromosome, telomeric region" evidence=IEA]
            [GO:0000729 "DNA double-strand break processing" evidence=IEA]
            [GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
            "bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
            GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
            GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
            GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
            EMBL:AAEX03002333 Ensembl:ENSCAFT00000019677 Uniprot:E2RS76
        Length = 1407

 Score = 501 (181.4 bits), Expect = 1.3e-46, P = 1.3e-46
 Identities = 126/300 (42%), Positives = 176/300 (58%)

Query:   148 KTENKAILEELRLVK--PRIKLLYVTPERAVTESFHYL--LQHLVRYNKLAYIVVDEAHC 203
             KT+++A    L+L K  P IKLLYVTPE+ V  S   L  L++L     LA  V+DEAHC
Sbjct:   730 KTDSEATSIYLQLSKKDPIIKLLYVTPEK-VCASNRLLSTLENLYERKLLARFVIDEAHC 788

Query:   204 VSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST 263
             VS+WGHDFR  Y+R+  LRQ    S+P++ALTATA P V++DI++ LK  +P +VF  S 
Sbjct:   789 VSQWGHDFRQDYKRMNMLRQ-KFPSVPVMALTATANPRVQKDILTQLKILQP-QVFSMSF 846

Query:   264 FRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK 323
              R NL Y V+     K ++  + E+I K    D+     GIIYC +R     +AD L++ 
Sbjct:   847 NRHNLKYYVLPKKPKKVAFDCL-EWIRKYHPHDS-----GIIYCLSRRECDTMADTLQKD 900

Query:   324 ----------VNKHERSRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIP 372
                       ++   R  VQ  ++  +   VI ATI+FGMGID+ +VRFV+H  +P S+ 
Sbjct:   901 GLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVE 960

Query:   373 AYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
              YYQESGRAGRDG  S+C ++++ H    L+ +I  +    R   E  F N  SM+ YCE
Sbjct:   961 GYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKDGNRHTRETHFNNLYSMVHYCE 1020


>TAIR|locus:2197394 [details] [associations]
            symbol:RECQ4A species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0006310 "DNA
            recombination" evidence=IEA;IMP] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA;ISS] [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=IEA] [GO:0070417 "cellular
            response to cold" evidence=IEP] [GO:0071215 "cellular response to
            abscisic acid stimulus" evidence=IEP] [GO:0000723 "telomere
            maintenance" evidence=IMP] [GO:0000724 "double-strand break repair
            via homologous recombination" evidence=IGI;RCA;IMP] [GO:0006974
            "response to DNA damage stimulus" evidence=IGI;IMP] [GO:0043138
            "3'-5' DNA helicase activity" evidence=IMP;IDA] [GO:0051276
            "chromosome organization" evidence=IMP] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
            Prosite:PS00018 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0009506 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
            GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0000724 EMBL:U95973 GO:GO:0071215 GO:GO:0070417 GO:GO:0051276
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0043138 HSSP:P15043 EMBL:AJ404473
            EMBL:AY120761 EMBL:BT010133 IPI:IPI00538289 PIR:B86243
            RefSeq:NP_172562.2 UniGene:At.10177 ProteinModelPortal:Q8L840
            SMR:Q8L840 STRING:Q8L840 PaxDb:Q8L840 PRIDE:Q8L840
            EnsemblPlants:AT1G10930.1 GeneID:837636 KEGG:ath:AT1G10930
            TAIR:At1g10930 HOGENOM:HOG000148634 InParanoid:Q8L840 OMA:QLPALIC
            PhylomeDB:Q8L840 ProtClustDB:PLN03137 Genevestigator:Q8L840
            Uniprot:Q8L840
        Length = 1188

 Score = 480 (174.0 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
 Identities = 124/315 (39%), Positives = 176/315 (55%)

Query:   144 SGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNK---LAYIVVDE 200
             +G    E   I +EL     + KLLYVTPE+ V +S   LL+HL   N    LA  V+DE
Sbjct:   525 AGMEWAEQLKIFQELNSEHSKYKLLYVTPEK-VAKS-DSLLRHLENLNSRGLLARFVIDE 582

Query:   201 AHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK 260
             AHCVS+WGHDFRP Y+ LG L+Q   N IP++ALTATA  SVK+D++  L       VF+
Sbjct:   583 AHCVSQWGHDFRPDYQSLGILKQKFPN-IPVLALTATATASVKEDVVQALGLVNCV-VFR 640

Query:   261 TSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADAL 320
              S  R NL+Y V+     K     + +FI     K+N  + CGIIYC +R     +++ L
Sbjct:   641 QSFNRPNLWYSVV--PKTKKCLEDIDKFI-----KENHFDECGIIYCLSRMDCEKVSERL 693

Query:   321 RRKVNK----H------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSS 370
             +   +K    H      +R+ +Q  + + EIN+I AT++FGMGI++ +VRFV+H  +P S
Sbjct:   694 QEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKS 753

Query:   371 IPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK---TDTS----------TKREQL 417
             I  Y+QE GRAGRDG +S C +Y+       ++++I     D S          +    L
Sbjct:   754 IEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNRVASSGRLL 813

Query:   418 ELKFKNYLSMLEYCE 432
             E   +N L M+ YCE
Sbjct:   814 ETNTENLLRMVRYCE 828

 Score = 48 (22.0 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query:    34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             ++L    K +FG  SF+   Q++ I +  +   D+FV MPT
Sbjct:   439 RKLEVNNKKVFGNHSFRPN-QREII-NATMSGSDVFVLMPT 477


>UNIPROTKB|J9PB86 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 CTD:641 OMA:NANDQAI
            EMBL:AAEX03002333 RefSeq:XP_003434427.1 Ensembl:ENSCAFT00000042800
            GeneID:100685609 KEGG:cfa:100685609 Uniprot:J9PB86
        Length = 1420

 Score = 501 (181.4 bits), Expect = 1.3e-46, P = 1.3e-46
 Identities = 126/300 (42%), Positives = 176/300 (58%)

Query:   148 KTENKAILEELRLVK--PRIKLLYVTPERAVTESFHYL--LQHLVRYNKLAYIVVDEAHC 203
             KT+++A    L+L K  P IKLLYVTPE+ V  S   L  L++L     LA  V+DEAHC
Sbjct:   743 KTDSEATSIYLQLSKKDPIIKLLYVTPEK-VCASNRLLSTLENLYERKLLARFVIDEAHC 801

Query:   204 VSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST 263
             VS+WGHDFR  Y+R+  LRQ    S+P++ALTATA P V++DI++ LK  +P +VF  S 
Sbjct:   802 VSQWGHDFRQDYKRMNMLRQ-KFPSVPVMALTATANPRVQKDILTQLKILQP-QVFSMSF 859

Query:   264 FRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK 323
              R NL Y V+     K ++  + E+I K    D+     GIIYC +R     +AD L++ 
Sbjct:   860 NRHNLKYYVLPKKPKKVAFDCL-EWIRKYHPHDS-----GIIYCLSRRECDTMADTLQKD 913

Query:   324 ----------VNKHERSRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIP 372
                       ++   R  VQ  ++  +   VI ATI+FGMGID+ +VRFV+H  +P S+ 
Sbjct:   914 GLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVE 973

Query:   373 AYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
              YYQESGRAGRDG  S+C ++++ H    L+ +I  +    R   E  F N  SM+ YCE
Sbjct:   974 GYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKDGNRHTRETHFNNLYSMVHYCE 1033


>UNIPROTKB|H0YNU5 [details] [associations]
            symbol:BLM "Bloom syndrome protein" species:9606 "Homo
            sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            TIGRFAMs:TIGR00614 HGNC:HGNC:1058 EMBL:AC021422 EMBL:AC124248
            ProteinModelPortal:H0YNU5 SMR:H0YNU5 Ensembl:ENST00000560509
            Bgee:H0YNU5 Uniprot:H0YNU5
        Length = 1286

 Score = 499 (180.7 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 123/299 (41%), Positives = 174/299 (58%)

Query:   148 KTENKAILEELRLVK--PRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204
             KT+++A    L+L K  P IKLLYVTPE+   +      L++L     LA  V+DEAHCV
Sbjct:   741 KTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCV 800

Query:   205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF 264
             S+WGHDFR  Y+R+  LRQ    S+P++ALTATA P V++DI++ LK  +P +VF  S  
Sbjct:   801 SQWGHDFRQDYKRMNMLRQ-KFPSVPVMALTATANPRVQKDILTQLKILRP-QVFSMSFN 858

Query:   265 RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK- 323
             R NL Y V+     K ++  + E+I K    D+     GIIYC +R     +AD L+R  
Sbjct:   859 RHNLKYYVLPKKPKKVAFDCL-EWIRKHHPYDS-----GIIYCLSRRECDTMADTLQRDG 912

Query:   324 ---------VNKHERSRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIPA 373
                      ++   R  VQ+ ++  +   VI ATI+FGMGID+ +VRFV+H  +P S+  
Sbjct:   913 LAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEG 972

Query:   374 YYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
             YYQESGRAGRDG  S+C ++++ H    L+ +I  +        E  F N  SM+ YCE
Sbjct:   973 YYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCE 1031


>UNIPROTKB|P54132 [details] [associations]
            symbol:BLM "Bloom syndrome protein" species:9606 "Homo
            sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0005657
            "replication fork" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5'
            DNA helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
            evidence=IEA] [GO:0045950 "negative regulation of mitotic
            recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
            differentiation" evidence=IEA] [GO:0046641 "positive regulation of
            alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
            "regulation of binding" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0031297
            "replication fork processing" evidence=IDA] [GO:0000781
            "chromosome, telomeric region" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
            [GO:0048478 "replication fork protection" evidence=NAS] [GO:0000800
            "lateral element" evidence=IDA] [GO:0006310 "DNA recombination"
            evidence=NAS] [GO:0051259 "protein oligomerization" evidence=IDA]
            [GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006974
            "response to DNA damage stimulus" evidence=IMP] [GO:0008026
            "ATP-dependent helicase activity" evidence=IDA] [GO:0009378
            "four-way junction helicase activity" evidence=IDA] [GO:0000405
            "bubble DNA binding" evidence=IDA] [GO:0051880 "G-quadruplex DNA
            binding" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0051782 "negative regulation of cell division"
            evidence=IMP] [GO:0000085 "G2 phase of mitotic cell cycle"
            evidence=NAS] [GO:0000724 "double-strand break repair via
            homologous recombination" evidence=NAS] [GO:0010165 "response to
            X-ray" evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
            [GO:0031572 "G2 DNA damage checkpoint" evidence=NAS] [GO:0004386
            "helicase activity" evidence=IDA] [GO:0045910 "negative regulation
            of DNA recombination" evidence=IMP] [GO:0006281 "DNA repair"
            evidence=NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IMP;IDA] [GO:0036310 "annealing helicase activity"
            evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016887
            "ATPase activity" evidence=IDA] [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=IMP] [GO:0000729 "DNA double-strand break processing"
            evidence=IDA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
            [GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
            GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
            GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
            GO:GO:0000085 Gene3D:1.10.10.10 InterPro:IPR011991
            Reactome:REACT_111183 GO:GO:0001673 GO:GO:0003697 GO:GO:0004003
            GO:GO:0000724 GO:GO:0016363 GO:GO:0046632 GO:GO:0010165
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0000723 GO:GO:0031572 GO:GO:0005657 eggNOG:COG0514 KO:K10901
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            HOGENOM:HOG000095239 HOVERGEN:HBG004850 OrthoDB:EOG4640B3
            GO:GO:0000729 EMBL:U39817 EMBL:AY886902 EMBL:BC093622 EMBL:BC101567
            EMBL:BC115030 EMBL:BC115032 IPI:IPI00004859 PIR:A57570
            RefSeq:NP_000048.1 UniGene:Hs.725208 PDB:2KV2 PDB:2RRD PDBsum:2KV2
            PDBsum:2RRD ProteinModelPortal:P54132 SMR:P54132 DIP:DIP-33322N
            IntAct:P54132 MINT:MINT-131918 STRING:P54132 PhosphoSite:P54132
            DMDM:1705486 PaxDb:P54132 PRIDE:P54132 Ensembl:ENST00000355112
            GeneID:641 KEGG:hsa:641 UCSC:uc002bpr.3 CTD:641
            GeneCards:GC15P091260 HGNC:HGNC:1058 HPA:HPA005689 MIM:210900
            MIM:604610 neXtProt:NX_P54132 Orphanet:125 PharmGKB:PA25369
            InParanoid:P54132 OMA:NANDQAI ChEMBL:CHEMBL1293237
            EvolutionaryTrace:P54132 GenomeRNAi:641 NextBio:2600
            PMAP-CutDB:P54132 ArrayExpress:P54132 Bgee:P54132 CleanEx:HS_BLM
            Genevestigator:P54132 GermOnline:ENSG00000197299 GO:GO:0000800
            GO:GO:0045120 GO:GO:0036310 GO:GO:0000405 GO:GO:0009378
            GO:GO:0051880 GO:GO:0051782 GO:GO:0045910 GO:GO:0045950
            GO:GO:0046641 GO:GO:0051098 GO:GO:0031297 GO:GO:0048478
            Uniprot:P54132
        Length = 1417

 Score = 499 (180.7 bits), Expect = 2.2e-46, P = 2.2e-46
 Identities = 123/299 (41%), Positives = 174/299 (58%)

Query:   148 KTENKAILEELRLVK--PRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204
             KT+++A    L+L K  P IKLLYVTPE+   +      L++L     LA  V+DEAHCV
Sbjct:   741 KTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCV 800

Query:   205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF 264
             S+WGHDFR  Y+R+  LRQ    S+P++ALTATA P V++DI++ LK  +P +VF  S  
Sbjct:   801 SQWGHDFRQDYKRMNMLRQ-KFPSVPVMALTATANPRVQKDILTQLKILRP-QVFSMSFN 858

Query:   265 RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK- 323
             R NL Y V+     K ++  + E+I K    D+     GIIYC +R     +AD L+R  
Sbjct:   859 RHNLKYYVLPKKPKKVAFDCL-EWIRKHHPYDS-----GIIYCLSRRECDTMADTLQRDG 912

Query:   324 ---------VNKHERSRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIPA 373
                      ++   R  VQ+ ++  +   VI ATI+FGMGID+ +VRFV+H  +P S+  
Sbjct:   913 LAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEG 972

Query:   374 YYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
             YYQESGRAGRDG  S+C ++++ H    L+ +I  +        E  F N  SM+ YCE
Sbjct:   973 YYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCE 1031


>DICTYBASE|DDB_G0272384 [details] [associations]
            symbol:DDB_G0272384 "Bloom syndrome-like protein"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0272384 GO:GO:0005524
            GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 EMBL:AAFI02000008 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 KO:K10901
            TIGRFAMs:TIGR00614 RefSeq:XP_645178.2 ProteinModelPortal:Q55A06
            EnsemblProtists:DDB0233085 GeneID:8618350 KEGG:ddi:DDB_G0272384
            OMA:YQQTGRA Uniprot:Q55A06
        Length = 973

 Score = 455 (165.2 bits), Expect = 2.5e-46, Sum P(2) = 2.5e-46
 Identities = 109/284 (38%), Positives = 161/284 (56%)

Query:   140 ELIVSGQTKTENKAILEELRLVKP-RIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVV 198
             E I S  ++ EN+ +L++L   +  ++KL+Y+TPER     F +LL  L    +L  +VV
Sbjct:   547 ESINSSGSQRENRDVLDQLLNGETCKLKLIYITPERLAQSEFLHLLDQLYDQGRLRRLVV 606

Query:   199 DEAHCVSEWGHDFRPTYRRLGELR-QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYK 257
             DEAHC+SEWGH FRP YR +   R +F   S+PI A TA+A P+V+ DI + LK   P  
Sbjct:   607 DEAHCISEWGHSFRPKYRLISTFRDRFP--SVPISAFTASATPNVEIDIKNSLKMVNPIT 664

Query:   258 VFKTSTFRSNLFYDVIF-----DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREH 312
             +  +S  R NL Y V       + LLKD Y     FI          N+ GIIYC T   
Sbjct:   665 I-NSSFLRPNLLYQVRQKQSDEESLLKDIY----NFISF-----KYPNSTGIIYCATVRE 714

Query:   313 TTDLADALRR----------KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFV 362
                +AD L            K++  +RS++Q+ +  GE  ++  TI+FGMGID+ + RFV
Sbjct:   715 CEIVADYLSERGLSSNFYHAKLSNTQRSKLQKDWTNGEFKIVCTTIAFGMGIDKGDTRFV 774

Query:   363 VHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 406
             +H  MP S+ +YYQ++GRAGRDG  S C +++++      +++I
Sbjct:   775 IHHSMPQSMESYYQQTGRAGRDGKHSDCLLFYNKSDLMRFKHII 818

 Score = 67 (28.6 bits), Expect = 2.5e-46, Sum P(2) = 2.5e-46
 Identities = 24/73 (32%), Positives = 34/73 (46%)

Query:     5 ESKDASSAVGKSSSLTGNQQDRKGGKVSEQ--ELTAKL-KALFGFDSFKCELQKKAIRHI 61
             +S D     G  +   GN  D+   K+  +  EL     + +FG   F+  LQ +AI  I
Sbjct:   433 KSDDDDDGNGNGNG-NGNDNDKNNLKLKREWHELVETCNRDIFGNKEFR-NLQIEAINSI 490

Query:    62 LLRTHDIFVSMPT 74
             L    D FVS+PT
Sbjct:   491 L-HDRDTFVSLPT 502


>ASPGD|ASPL0000045206 [details] [associations]
            symbol:musN species:162425 "Emericella nidulans"
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
            EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
            ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
            GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
            Uniprot:G5EB35
        Length = 1534

 Score = 499 (180.7 bits), Expect = 2.5e-46, P = 2.5e-46
 Identities = 128/352 (36%), Positives = 200/352 (56%)

Query:    99 ILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKA-ILEE 157
             I +G+ R     ISP+LS      +D  + +   +   Y    +++G T +E +  I+  
Sbjct:   738 ISSGSTRGVTLVISPLLSLM----QDQVSHLRQNKIKAY----LINGDTPSEERQWIMST 789

Query:   158 LRLVKPR--IKLLYVTPERAVTESFHYL---LQHLVRYNKLAYIVVDEAHCVSEWGHDFR 212
             L    P   I+LLY+TPE  +++S H L   ++ L    KLA +V+DEAHCVS+WGHDFR
Sbjct:   790 LSSHNPETHIELLYITPEM-ISKS-HALTDRIEKLCSIQKLARVVIDEAHCVSQWGHDFR 847

Query:   213 PTYRRLGELR-QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYD 271
             P Y+++G  R +  G  +P++ALTATA  +VK D+I  L+  +  +VF  S  R NL Y+
Sbjct:   848 PDYKQIGAFRARIPG--VPLMALTATATENVKVDVIHNLRM-QGCEVFTQSFNRPNLTYE 904

Query:   272 VIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVN-KHE-- 328
             V      K  +A + + I   + K    N CGI+YC +R     +A+ALR   + K E  
Sbjct:   905 V----RRKGKHAELLDSIADTI-KSTYRNKCGIVYCLSRNTCEKVAEALRTNYSIKAEHY 959

Query:   329 --------RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380
                     R+R Q+ +  G+++VI ATI+FGMGID+ +VRFV+H  +P S+  YYQE+GR
Sbjct:   960 HAGLDAETRARTQQRWQAGDVHVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGR 1019

Query:   381 AGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
             AGRDG +S C +Y S     +++ +I+ +  +   Q   + +    +++YCE
Sbjct:  1020 AGRDGRRSGCYLYFSHRDVSTMQSMIEKNEDSDDVQKGRQTRMLNDVVKYCE 1071


>DICTYBASE|DDB_G0292130 [details] [associations]
            symbol:blm "Bloom syndrome protein" species:44689
            "Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
            [GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
            dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
            GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
            EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
            InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
            Uniprot:Q54DM3
        Length = 1259

 Score = 464 (168.4 bits), Expect = 3.0e-46, Sum P(2) = 3.0e-46
 Identities = 115/293 (39%), Positives = 170/293 (58%)

Query:   154 ILEELRLVKPRIKLLYVTPERAV-TESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFR 212
             + +++R   P+I+LLY+TPER V ++S   +L +L +    + IV+DEAHCVS+WGHDFR
Sbjct:   608 VYKDIRSNSPKIRLLYLTPERVVKSDSLIEILANLDQKGLFSRIVIDEAHCVSQWGHDFR 667

Query:   213 PTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV 272
             P Y+ L  LR+     +PI+ALTATA   V+ D+I  L    P   FK S  R NL Y V
Sbjct:   668 PDYKELSILRR-KFPKVPILALTATATERVRNDVIYNLSMRNPV-CFKQSFNRPNLIYQV 725

Query:   273 IFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR-KVNK-H--- 327
             +     K     + +FI          +  GI+YC ++    ++A  LR  K++  H   
Sbjct:   726 L--KKTKQVVDDMSKFIHSTY-----PDKSGIVYCISKYDCENVAKRLRELKISAAHYHA 778

Query:   328 -----ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAG 382
                  ER++VQ ++ +G I VI ATI+FGMGI++ +VRFV+H  +P S+  YYQESGRAG
Sbjct:   779 GLENDERAKVQANWQKGRIKVIVATIAFGMGINKADVRFVIHHSVPKSLEGYYQESGRAG 838

Query:   383 RDGLQSYCRIYHSEHSKKSLEYVIKTD-TSTKREQLELK-FKNYLS-MLEYCE 432
             RDG  S+C +Y S   K   + +I+   TS +      +  ++ L+ M+ YCE
Sbjct:   839 RDGGISHCLLYFSWADKLRNDLLIQNSFTSGQGSSHNTRETRDSLNKMVNYCE 891

 Score = 62 (26.9 bits), Expect = 3.0e-46, Sum P(2) = 3.0e-46
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query:     6 SKDASSAVGKSSSLTGNQQDRKGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRT 65
             S + ++ V   ++  G+    KG     Q++    +++FGF  F+ E Q++ I   L   
Sbjct:   484 SNNNNNNVFSVANFNGDNSRFKGNFPWSQKIIDINRSMFGFHVFR-ENQREIINSTL-EG 541

Query:    66 HDIFVSMPT 74
             +D FV MPT
Sbjct:   542 NDTFVLMPT 550

 Score = 44 (20.5 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
 Identities = 22/88 (25%), Positives = 38/88 (43%)

Query:   101 NGNVRSRNGWISPILSSFYLRFRDDKTS--IVTGRSDLYQLELIVS-------GQTKTEN 151
             N N  + N   +  ++S    F +  +S  + T +SDLY L +          G +  E 
Sbjct:   218 NNNYNNNNNNNTNSINSNIYNFVNKNSSDLVKTIKSDLYDLGIKKKNLKNQKKGSSDDEK 277

Query:   152 KAILEELRLVKPRIKLLYVTPERAVTES 179
             + I +EL+ +K   K L    E A+  +
Sbjct:   278 QRISDELQEIKKSKKELIKLLENALNNN 305


>UNIPROTKB|Q9KVF0 [details] [associations]
            symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
            recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
            TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
            RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
            DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
            Uniprot:Q9KVF0
        Length = 620

 Score = 458 (166.3 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
 Identities = 105/270 (38%), Positives = 160/270 (59%)

Query:   159 RLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRL 218
             R+   ++KLLYV+PER +T  F   L HL     LA I VDEAHC+S+WGHDFRP Y  L
Sbjct:   122 RMHAGQLKLLYVSPERVLTAEFIERLSHL----PLAMIAVDEAHCISQWGHDFRPEYASL 177

Query:   219 GELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLL 278
             G+L+Q   N +P++ALTATA+ + + DI+  L+ N+P++ +  S  R N+ Y      +L
Sbjct:   178 GQLKQRFPN-VPVMALTATADDATRHDIMQRLQLNEPHQ-YLGSFDRPNIRY------ML 229

Query:   279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALR----RKVNKH------E 328
              + +  V + I      + +   CGIIYC +R+    L + L     R  + H      E
Sbjct:   230 VEKHKPVSQVIRYL---ETQRGQCGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADE 286

Query:   329 RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQS 388
             R+ VQE+F R ++ ++ AT++FGMGI++ NVRFVVH+ +P +I +YYQE+GRAGRDGL +
Sbjct:   287 RAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA 346

Query:   389 YCRIYHSEHSKKSLEYVIKTDTSTKREQLE 418
                + +       L  ++       ++Q+E
Sbjct:   347 EAMMLYDPADMNWLRRMLDEKPDGAQKQVE 376

 Score = 42 (19.8 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query:   168 LYVTPERAVTESFHY 182
             L+ TPER + E F Y
Sbjct:    21 LFATPERVLHEVFGY 35


>TIGR_CMR|VC_0196 [details] [associations]
            symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
            "DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
            TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
            RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
            DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
            Uniprot:Q9KVF0
        Length = 620

 Score = 458 (166.3 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
 Identities = 105/270 (38%), Positives = 160/270 (59%)

Query:   159 RLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRL 218
             R+   ++KLLYV+PER +T  F   L HL     LA I VDEAHC+S+WGHDFRP Y  L
Sbjct:   122 RMHAGQLKLLYVSPERVLTAEFIERLSHL----PLAMIAVDEAHCISQWGHDFRPEYASL 177

Query:   219 GELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLL 278
             G+L+Q   N +P++ALTATA+ + + DI+  L+ N+P++ +  S  R N+ Y      +L
Sbjct:   178 GQLKQRFPN-VPVMALTATADDATRHDIMQRLQLNEPHQ-YLGSFDRPNIRY------ML 229

Query:   279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALR----RKVNKH------E 328
              + +  V + I      + +   CGIIYC +R+    L + L     R  + H      E
Sbjct:   230 VEKHKPVSQVIRYL---ETQRGQCGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADE 286

Query:   329 RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQS 388
             R+ VQE+F R ++ ++ AT++FGMGI++ NVRFVVH+ +P +I +YYQE+GRAGRDGL +
Sbjct:   287 RAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA 346

Query:   389 YCRIYHSEHSKKSLEYVIKTDTSTKREQLE 418
                + +       L  ++       ++Q+E
Sbjct:   347 EAMMLYDPADMNWLRRMLDEKPDGAQKQVE 376

 Score = 42 (19.8 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query:   168 LYVTPERAVTESFHY 182
             L+ TPER + E F Y
Sbjct:    21 LFATPERVLHEVFGY 35


>ZFIN|ZDB-GENE-070702-5 [details] [associations]
            symbol:blm "Bloom syndrome" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
            regulation of mitotic recombination" evidence=IMP] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
            EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
            EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
            EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
            EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
            EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
            IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
        Length = 1420

 Score = 491 (177.9 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 119/303 (39%), Positives = 173/303 (57%)

Query:   143 VSGQTKTENKA-ILEELRLVKPRIKLLYVTPERAVTES-FHYLLQHLVRYNKLAYIVVDE 200
             +SG  K    A I  +L    P IKLLY TPE+          LQ+L     LA +V+DE
Sbjct:   729 LSGDKKDSEAARIYMQLSRKDPAIKLLYATPEKVCASGRMISALQNLYERGLLARLVIDE 788

Query:   201 AHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK 260
             AHCVS+WGHDFRP Y+RL ELR+   N +PI+ALTATA P V++DI++ L   +P +VF 
Sbjct:   789 AHCVSQWGHDFRPDYKRLHELRRMFPN-VPIMALTATATPRVQKDILNQLAMTRP-QVFT 846

Query:   261 TSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADAL 320
              S  R+NL Y V+     K     + ++I+K   +D+     GI+YC +R     LAD+L
Sbjct:   847 MSFNRNNLKYSVLPKKPKKVDEECI-QWIKKYYPRDS-----GIVYCLSRNDCDTLADSL 900

Query:   321 RRK----------VNKHERSRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPS 369
             +R           ++  +R  VQ  ++  +   V+ ATI+FGMGID+ +VR+V+H  +P 
Sbjct:   901 QRAGIAALAYHAGLSDSDREYVQNKWINQDGCQVMCATIAFGMGIDKPDVRYVIHASLPK 960

Query:   370 SIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLE 429
             S+  YYQESGRAGRDG  S+C +++S      ++ +I  D    ++       N  SM+ 
Sbjct:   961 SVEGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRLIAMDKDGNQQSKATHINNLHSMVH 1020

Query:   430 YCE 432
             +CE
Sbjct:  1021 FCE 1023


>MGI|MGI:1328362 [details] [associations]
            symbol:Blm "Bloom syndrome, RecQ helicase-like"
            species:10090 "Mus musculus" [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
            "telomere maintenance" evidence=IGI] [GO:0000729 "DNA double-strand
            break processing" evidence=ISO] [GO:0000733 "DNA strand
            renaturation" evidence=ISO] [GO:0000800 "lateral element"
            evidence=ISO] [GO:0001673 "male germ cell nucleus" evidence=IDA]
            [GO:0002039 "p53 binding" evidence=ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003824
            "catalytic activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
            helicase activity" evidence=ISO] [GO:0004386 "helicase activity"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=ISO] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005657
            "replication fork" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
            "ATP catabolic process" evidence=ISO;IDA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IDA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
            to DNA damage stimulus" evidence=ISO] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISO] [GO:0009378 "four-way junction
            helicase activity" evidence=ISO] [GO:0010165 "response to X-ray"
            evidence=ISO] [GO:0016363 "nuclear matrix" evidence=ISO]
            [GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISO] [GO:0031297
            "replication fork processing" evidence=ISO] [GO:0036310 "annealing
            helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5'
            DNA helicase activity" evidence=IDA] [GO:0044237 "cellular
            metabolic process" evidence=IEA] [GO:0045120 "pronucleus"
            evidence=IDA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0045910 "negative regulation of
            DNA recombination" evidence=ISO] [GO:0045950 "negative regulation
            of mitotic recombination" evidence=IMP] [GO:0046632 "alpha-beta T
            cell differentiation" evidence=IMP] [GO:0046641 "positive
            regulation of alpha-beta T cell proliferation" evidence=IMP]
            [GO:0051098 "regulation of binding" evidence=IDA] [GO:0051259
            "protein oligomerization" evidence=ISO] [GO:0051276 "chromosome
            organization" evidence=IMP] [GO:0051782 "negative regulation of
            cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 MGI:MGI:1328362 GO:GO:0005524
            GO:GO:0005737 GO:GO:0005654 GO:GO:0003677 GO:GO:0006260
            Gene3D:1.10.10.10 InterPro:IPR011991 Reactome:REACT_120463
            GO:GO:0006310 GO:GO:0001673 GO:GO:0046632 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
            Reactome:REACT_27235 GO:GO:0005657 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOGENOM:HOG000095239
            HOVERGEN:HBG004850 OrthoDB:EOG4640B3 GO:GO:0000729 ChiTaRS:BLM
            CTD:641 GO:GO:0045120 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
            EMBL:Z98263 EMBL:AB008674 IPI:IPI00329943 RefSeq:NP_001035992.1
            RefSeq:NP_031576.4 UniGene:Mm.12932 ProteinModelPortal:O88700
            SMR:O88700 DIP:DIP-27643N STRING:O88700 PhosphoSite:O88700
            PRIDE:O88700 DNASU:12144 Ensembl:ENSMUST00000081314 GeneID:12144
            KEGG:mmu:12144 UCSC:uc009iaw.2 InParanoid:O88700 NextBio:280473
            Bgee:O88700 CleanEx:MM_BLM Genevestigator:O88700
            GermOnline:ENSMUSG00000030528 Uniprot:O88700
        Length = 1416

 Score = 487 (176.5 bits), Expect = 4.1e-45, P = 4.1e-45
 Identities = 122/299 (40%), Positives = 173/299 (57%)

Query:   148 KTENKAILEELRLVK--PRIKLLYVTPERAVTES-FHYLLQHLVRYNKLAYIVVDEAHCV 204
             KT+++A    L+L K  P IKLLYVTPE+    +     L++L     LA  V+DEAHCV
Sbjct:   749 KTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCV 808

Query:   205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF 264
             S+WGHDFR  Y+R+  LRQ    S+P++ALTATA P V++DI++ LK  +P +VF  S  
Sbjct:   809 SQWGHDFRQDYKRMNMLRQ-KFPSVPVMALTATANPRVQKDILTQLKILRP-QVFSMSFN 866

Query:   265 RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK- 323
             R NL Y V+     K ++  + E+I K    D+     GIIYC +R     +AD L+R+ 
Sbjct:   867 RHNLKYYVLPKKPKKVAFDCL-EWIRKHHPYDS-----GIIYCLSRRECDTMADTLQREG 920

Query:   324 ---------VNKHERSRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIPA 373
                      ++   R  VQ  ++  +   VI ATI+FGMGID+ +VRFV+H  +P S+  
Sbjct:   921 LAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEG 980

Query:   374 YYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
             YYQESGRAGRDG  S+C ++++ H    L+ +I  +        E    N  SM+ YCE
Sbjct:   981 YYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEKDGNYHTKETHVNNLYSMVHYCE 1039


>UNIPROTKB|F1P3V1 [details] [associations]
            symbol:BLM "Bloom syndrome protein homolog" species:9031
            "Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
            "regulation of cyclin-dependent protein serine/threonine kinase
            activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0000729 "DNA double-strand break processing" evidence=IEA]
            [GO:0000781 "chromosome, telomeric region" evidence=IEA]
            [GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
            cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005657 "replication fork"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
            activity" evidence=IEA] [GO:0010165 "response to X-ray"
            evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
            [GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
            processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
            mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
            differentiation" evidence=IEA] [GO:0046641 "positive regulation of
            alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
            "regulation of binding" evidence=IEA] [GO:0051259 "protein
            oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
            cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
            GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
            GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
            GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
            GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
            EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
            OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
        Length = 1380

 Score = 468 (169.8 bits), Expect = 6.6e-44, Sum P(2) = 6.6e-44
 Identities = 121/284 (42%), Positives = 162/284 (57%)

Query:   163 PRIKLLYVTPERAVTESFHYL--LQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE 220
             P IKLLYVTPE+ V  S   L  L++L     LA  V+DEAHCVS+WGHDFR  Y+RL  
Sbjct:   726 PIIKLLYVTPEK-VCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNM 784

Query:   221 LRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKD 280
             LR+   +S+P++ALTATA P V++DI + L+  KP +VF  S  R NL YDV+     K 
Sbjct:   785 LRK-KFHSVPMMALTATANPRVQKDIQNQLEMLKP-QVFTMSFNRHNLKYDVL-PKKPKK 841

Query:   281 SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-----------VNKHER 329
                   E+I+K    D+     GIIYC +R H  D   A+ +K           +    R
Sbjct:   842 VAMDCLEWIKKYHPHDS-----GIIYCLSR-HECDTTAAILQKEGLAALAYHAGLTDSNR 895

Query:   330 SRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQS 388
               VQ+ ++  E   VI ATI+FGMGID+ +VR+V+H  +P SI  YYQESGRAGRDG  S
Sbjct:   896 DLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMS 955

Query:   389 YCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
             +C +++S      L  +I  +        +  F N  SM+ YCE
Sbjct:   956 HCLLFYSYSDVTRLRRLILMEKDGNSHTRQTHFNNLYSMVHYCE 999

 Score = 37 (18.1 bits), Expect = 6.6e-44, Sum P(2) = 6.6e-44
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query:   156 EELRLVKPRIKLLYVTPERAVTESFHYLLQH 186
             E+LRL   R  L  V P R+   +F +   H
Sbjct:    11 EQLRLHSARGALSKVLPARSRPAAFTFRRTH 41


>POMBASE|SPAC2G11.12 [details] [associations]
            symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
            "Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
            evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
            homologous recombination" evidence=IGI] [GO:0000725
            "recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
            involved in replication" evidence=ISO] [GO:0006974 "response to DNA
            damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
            recombination" evidence=IMP] [GO:0009650 "UV protection"
            evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
            evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
            evidence=IDA] [GO:0034065 "replication fork processing at rDNA
            locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
            evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
            evidence=IC] [GO:0045950 "negative regulation of mitotic
            recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
            recombination intermediates" evidence=IMP] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
            GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
            GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
            GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
            RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
            EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
            OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
            GO:GO:0071140 Uniprot:Q09811
        Length = 1328

 Score = 472 (171.2 bits), Expect = 1.5e-43, P = 1.5e-43
 Identities = 117/309 (37%), Positives = 171/309 (55%)

Query:   141 LIVSG-QTKTENKAILEELRLVKPRIKLLYVTPERAVTE-SFHYLLQHLVRYNKLAYIVV 198
             L +SG Q   E + ++  L      +KLLYVTPE   +  +   +L+ L     LA IV+
Sbjct:   591 LPLSGEQPADERRQVISFLMAKNVLVKLLYVTPEGLASNGAITRVLKSLYERKLLARIVI 650

Query:   199 DEAHCVSEWGHDFRPTYRRLGELR-QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYK 257
             DEAHCVS WGHDFRP Y++LG LR ++ G  IP +ALTATA   VK+DII+ L+     +
Sbjct:   651 DEAHCVSHWGHDFRPDYKQLGLLRDRYQG--IPFMALTATANEIVKKDIINTLRMENCLE 708

Query:   258 VFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLA 317
             + K+S  R NLFY++      KD Y  +  FI      +   +  GIIYC +R     +A
Sbjct:   709 L-KSSFNRPNLFYEI---KPKKDLYTELYRFIS-----NGHLHESGIIYCLSRTSCEQVA 759

Query:   318 DALRRK-----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWG 366
               LR             + K ER R+Q  +  G   +I ATI+FGMG+D+ +VRFV+H  
Sbjct:   760 AKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHS 819

Query:   367 MPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT---DTSTKREQLELKFKN 423
              P S+  YYQE+GRAGRDG  ++C +++S     + + +I +   D  TK  Q ++    
Sbjct:   820 FPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMSGDGDAETKERQRQM---- 875

Query:   424 YLSMLEYCE 432
                ++++CE
Sbjct:   876 LRQVIQFCE 884


>UNIPROTKB|F1ND40 [details] [associations]
            symbol:BLM "Bloom syndrome protein homolog" species:9031
            "Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0000079 "regulation of cyclin-dependent protein
            serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
            DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
            evidence=IEA] [GO:0000729 "DNA double-strand break processing"
            evidence=IEA] [GO:0000781 "chromosome, telomeric region"
            evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
            [GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
            binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
            "replication fork" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
            "four-way junction helicase activity" evidence=IEA] [GO:0010165
            "response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
            evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
            "replication fork processing" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045950 "negative regulation of mitotic recombination"
            evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
            evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
            proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
            evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
            [GO:0051782 "negative regulation of cell division" evidence=IEA]
            [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
            GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
            GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
            EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
            ArrayExpress:F1ND40 Uniprot:F1ND40
        Length = 1142

 Score = 468 (169.8 bits), Expect = 2.9e-43, P = 2.9e-43
 Identities = 121/284 (42%), Positives = 162/284 (57%)

Query:   163 PRIKLLYVTPERAVTESFHYL--LQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE 220
             P IKLLYVTPE+ V  S   L  L++L     LA  V+DEAHCVS+WGHDFR  Y+RL  
Sbjct:   488 PIIKLLYVTPEK-VCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNM 546

Query:   221 LRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKD 280
             LR+   +S+P++ALTATA P V++DI + L+  KP +VF  S  R NL YDV+     K 
Sbjct:   547 LRK-KFHSVPMMALTATANPRVQKDIQNQLEMLKP-QVFTMSFNRHNLKYDVL-PKKPKK 603

Query:   281 SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-----------VNKHER 329
                   E+I+K    D+     GIIYC +R H  D   A+ +K           +    R
Sbjct:   604 VAMDCLEWIKKYHPHDS-----GIIYCLSR-HECDTTAAILQKEGLAALAYHAGLTDSNR 657

Query:   330 SRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQS 388
               VQ+ ++  E   VI ATI+FGMGID+ +VR+V+H  +P SI  YYQESGRAGRDG  S
Sbjct:   658 DLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMS 717

Query:   389 YCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
             +C +++S      L  +I  +        +  F N  SM+ YCE
Sbjct:   718 HCLLFYSYSDVTRLRRLILMEKDGNSHTRQTHFNNLYSMVHYCE 761


>CGD|CAL0004296 [details] [associations]
            symbol:SGS1 species:5476 "Candida albicans" [GO:0006974
            "response to DNA damage stimulus" evidence=IMP] [GO:0001302
            "replicative cell aging" evidence=IMP] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0031422 "RecQ helicase-Topo III complex"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0044182
            "filamentous growth of a population of unicellular organisms"
            evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
            evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
            processing" evidence=IEA] [GO:0006268 "DNA unwinding involved in
            replication" evidence=IEA] [GO:0000070 "mitotic sister chromatid
            segregation" evidence=IEA] [GO:0031573 "intra-S DNA damage
            checkpoint" evidence=IEA] [GO:0031292 "gene conversion at
            mating-type locus, DNA double-strand break processing"
            evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
            evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
            molecule formation" evidence=IEA] [GO:0000724 "double-strand break
            repair via homologous recombination" evidence=IEA] [GO:0045132
            "meiotic chromosome segregation" evidence=IEA] [GO:0030447
            "filamentous growth" evidence=IMP] [GO:0004003 "ATP-dependent DNA
            helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
            CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
            GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
            EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
            RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
            GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
            KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
        Length = 1189

 Score = 442 (160.7 bits), Expect = 6.0e-43, Sum P(2) = 6.0e-43
 Identities = 105/282 (37%), Positives = 162/282 (57%)

Query:   165 IKLLYVTPERA-VTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELR- 222
             + ++Y++PERA  + +   ++  L   N+LA +V+DEAHC+S WGHDFRP Y+ LG  + 
Sbjct:   560 LDIVYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKD 619

Query:   223 QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDS- 281
             +F    +PI+ALTATA   V+ DI+  LK   P  + K S  R+NLFY++    L K + 
Sbjct:   620 KFP--KVPIMALTATANEKVQMDILHNLKMKDPV-LLKQSFNRTNLFYEI---KLKKSNC 673

Query:   282 YAHVKEFI-EKCLGKDNKANNCGIIYCRTR---EHTTDLADALRRKVNKH-------ERS 330
                +K++I  +  GK       GIIYC ++   EHT+   +    K + +       +R 
Sbjct:   674 LLEIKDYILSRFSGKS------GIIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRF 727

Query:   331 RVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYC 390
              +Q+ +   +I VI ATI+FGMGID+ +VRFV+H  +P ++  YYQE+GRAGRDG  S C
Sbjct:   728 NIQKRWQENKIQVICATIAFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSEC 787

Query:   391 RIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
              +Y+     +SL+ +I+ D        E        +++YCE
Sbjct:   788 VMYYCYKDARSLQNLIQRDEELSESGRESHLAKLRQVIQYCE 829

 Score = 52 (23.4 bits), Expect = 6.0e-43, Sum P(2) = 6.0e-43
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query:    27 KGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             KG +    E+ + L  +F   SF+   Q +A+    L   D+FV MPT
Sbjct:   444 KGSEPFMDEVHSILNNVFKLKSFRAN-QLEAVS-ATLSNKDVFVLMPT 489


>UNIPROTKB|Q5A5R4 [details] [associations]
            symbol:SGS1 "Putative uncharacterized protein SGS1"
            species:237561 "Candida albicans SC5314" [GO:0001302 "replicative
            cell aging" evidence=IMP] [GO:0006974 "response to DNA damage
            stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
            evidence=IMP] [GO:0044182 "filamentous growth of a population of
            unicellular organisms" evidence=IMP] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
            CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
            GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
            EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
            RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
            GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
            KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
        Length = 1189

 Score = 442 (160.7 bits), Expect = 6.0e-43, Sum P(2) = 6.0e-43
 Identities = 105/282 (37%), Positives = 162/282 (57%)

Query:   165 IKLLYVTPERA-VTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELR- 222
             + ++Y++PERA  + +   ++  L   N+LA +V+DEAHC+S WGHDFRP Y+ LG  + 
Sbjct:   560 LDIVYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKD 619

Query:   223 QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDS- 281
             +F    +PI+ALTATA   V+ DI+  LK   P  + K S  R+NLFY++    L K + 
Sbjct:   620 KFP--KVPIMALTATANEKVQMDILHNLKMKDPV-LLKQSFNRTNLFYEI---KLKKSNC 673

Query:   282 YAHVKEFI-EKCLGKDNKANNCGIIYCRTR---EHTTDLADALRRKVNKH-------ERS 330
                +K++I  +  GK       GIIYC ++   EHT+   +    K + +       +R 
Sbjct:   674 LLEIKDYILSRFSGKS------GIIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRF 727

Query:   331 RVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYC 390
              +Q+ +   +I VI ATI+FGMGID+ +VRFV+H  +P ++  YYQE+GRAGRDG  S C
Sbjct:   728 NIQKRWQENKIQVICATIAFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSEC 787

Query:   391 RIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
              +Y+     +SL+ +I+ D        E        +++YCE
Sbjct:   788 VMYYCYKDARSLQNLIQRDEELSESGRESHLAKLRQVIQYCE 829

 Score = 52 (23.4 bits), Expect = 6.0e-43, Sum P(2) = 6.0e-43
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query:    27 KGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             KG +    E+ + L  +F   SF+   Q +A+    L   D+FV MPT
Sbjct:   444 KGSEPFMDEVHSILNNVFKLKSFRAN-QLEAVS-ATLSNKDVFVLMPT 489


>SGD|S000004802 [details] [associations]
            symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
            species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0000722 "telomere maintenance via
            recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
            formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
            DNA double-strand break processing" evidence=IGI] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
            "DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0010520
            "regulation of reciprocal meiotic recombination" evidence=IGI]
            [GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
            [GO:0000724 "double-strand break repair via homologous
            recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
            mating-type locus, DNA double-strand break processing"
            evidence=IGI] [GO:0000729 "DNA double-strand break processing"
            evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
            [GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
            molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
            segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
            segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
            replication" evidence=IDA] [GO:0051276 "chromosome organization"
            evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
            GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
            GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
            GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
            EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
            OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
            RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
            SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
            STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
            GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
            OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
            Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
            InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
        Length = 1447

 Score = 451 (163.8 bits), Expect = 9.4e-43, Sum P(2) = 9.4e-43
 Identities = 108/281 (38%), Positives = 160/281 (56%)

Query:   165 IKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGEL-R 222
             + L+Y++PE  + +E     +  L    KLA IVVDEAHCVS WGHDFRP Y+ L    R
Sbjct:   773 LDLVYISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKR 832

Query:   223 QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF-RSNLFYDVIFDDLLKDS 281
             ++    IP+IALTATA   V+ DII  L+  +P  VF   +F R+NL+Y+V  +   K++
Sbjct:   833 EYP--DIPMIALTATASEQVRMDIIHNLELKEP--VFLKQSFNRTNLYYEV--NKKTKNT 886

Query:   282 YAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNK----H------ERSR 331
                + + +     K    N  GIIYC +++     +  ++R   K    H      ER  
Sbjct:   887 IFEICDAV-----KSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLS 941

Query:   332 VQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCR 391
             VQ+++   EI VI AT++FGMGID+ +VRFV H+ +P ++  YYQE+GRAGRDG  SYC 
Sbjct:   942 VQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCI 1001

Query:   392 IYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
              Y S    ++++ +I+ D +  RE  E        ++ YC+
Sbjct:  1002 TYFSFRDIRTMQTMIQKDKNLDRENKEKHLNKLQQVMAYCD 1042

 Score = 44 (20.5 bits), Expect = 9.4e-43, Sum P(2) = 9.4e-43
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query:    35 ELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             E+  +L  +F    F+   Q +A+ +  L+  D+FV MPT
Sbjct:   665 EVLYRLHEVFKLPGFRPN-QLEAV-NATLQGKDVFVLMPT 702


>TIGR_CMR|SO_4241 [details] [associations]
            symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
            species:211586 "Shewanella oneidensis MR-1" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
            HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
            RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
            GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
            ProtClustDB:CLSK907564 Uniprot:Q8E9M8
        Length = 607

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 116/333 (34%), Positives = 191/333 (57%)

Query:   111 ISPILSSFYLRFRDDKTSIV-TGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLY 169
             +SP++S      +D   S++ TG +  Y    + S Q +  +  +L +L L +  +KLLY
Sbjct:    71 VSPLISLM----KDQVDSLLQTGVNAAY----LNSSQPRELSLEVLRQLHLGE--LKLLY 120

Query:   170 VTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSI 229
             V+PER +T  F   +Q L     L+   +DEAHC+S+WGHDFRP Y  LG+L+Q   + +
Sbjct:   121 VSPERLLTADFIERMQSL----PLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPH-V 175

Query:   230 PIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFI 289
             P++ALTATA+ + +Q+I   L  N P+K+  +S  R N+ Y V  + L  ++   +++F+
Sbjct:   176 PMMALTATADQATRQNICERLGIN-PFKLL-SSFDRPNIRYTVA-EKL--NAANQLRQFL 230

Query:   290 EKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQESFMRG 339
              +  G        GIIYC +R    ++A+ L  +          +   ER  VQ+SF++ 
Sbjct:   231 LQQNGSS------GIIYCSSRRRVDEVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKD 284

Query:   340 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399
             +I+++ AT++FGMGI++ NVRFVVH+ +P SI AYYQE+GRAGRDGL++   +       
Sbjct:   285 QIDIVVATVAFGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADI 344

Query:   400 KSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
               + ++I+      ++Q+E  F    +M  + E
Sbjct:   345 GRVRHLIEQSEPGPQQQVE--FHKLNTMAAFAE 375


>UNIPROTKB|Q9I920 [details] [associations]
            symbol:BLM "Bloom syndrome protein homolog" species:9031
            "Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
            double-strand break processing" evidence=ISS] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
            ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
            HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
            OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
        Length = 1142

 Score = 462 (167.7 bits), Expect = 1.3e-42, P = 1.3e-42
 Identities = 119/284 (41%), Positives = 161/284 (56%)

Query:   163 PRIKLLYVTPERAVTESFHYL--LQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE 220
             P IKLLYVTPE+ V  S   L  L++L     LA  V+DEAHCVS+WGHDFR  Y+RL  
Sbjct:   488 PIIKLLYVTPEK-VCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNM 546

Query:   221 LRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKD 280
             LR+   +S+P++ALTATA P V++DI + L+  KP +VF  S  R NL YDV+     K 
Sbjct:   547 LRK-KFHSVPMMALTATANPRVQKDIQNQLEMLKP-QVFTMSFNRHNLKYDVL-PKKPKK 603

Query:   281 SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-----------VNKHER 329
                   E+I+K    D+     GIIYC +R H  D   A+ +K           +    R
Sbjct:   604 VAMDCLEWIKKYHPHDS-----GIIYCLSR-HECDTTAAILQKEGLAALAYHAGLTDSNR 657

Query:   330 SRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQS 388
               VQ+ ++  E   VI ATI+FGMGID+ +VR+V+H  +P S+  YY ESGRAGRDG  S
Sbjct:   658 DLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEMS 717

Query:   389 YCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
             +C +++S      L  +I  +        +  F N  SM+ YCE
Sbjct:   718 HCLLFYSYSDVTRLRRLILMEKDGNSHTRQTHFNNLYSMVHYCE 761


>FB|FBgn0002906 [details] [associations]
            symbol:Blm "Bloom syndrome helicase ortholog" species:7227
            "Drosophila melanogaster" [GO:0006302 "double-strand break repair"
            evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
            evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
            [GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
            synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0045003 "double-strand break repair via synthesis-dependent
            strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
            evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
            [GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
            [GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
            evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IDA] [GO:0000724 "double-strand break repair via
            homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
            meiotic recombination" evidence=IMP] [GO:1901291 "negative
            regulation of double-strand break repair via single-strand
            annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
            InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
            UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
            MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
            EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
            CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
            OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
            NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
            GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
            Uniprot:Q9VGI8
        Length = 1487

 Score = 464 (168.4 bits), Expect = 1.3e-42, P = 1.3e-42
 Identities = 113/302 (37%), Positives = 176/302 (58%)

Query:   143 VSGQTKTEN-KAILEELRLVKPRIKLLYVTPERAVTES-FHYLLQHLVRYNKLAYIVVDE 200
             +SG+ K  +  AI  +L    P +KLLYVTPE+  + + F   L  L   N ++  V+DE
Sbjct:   807 LSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDTLNSNNYISRFVIDE 866

Query:   201 AHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK 260
             AHCVS+WGHDFRP Y++LG L++   N +P IALTATA P V+ DI++ L   K  K F 
Sbjct:   867 AHCVSQWGHDFRPDYKKLGVLKKRFPN-VPTIALTATATPRVRLDILAQLNL-KNCKWFL 924

Query:   261 TSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADAL 320
             +S  RSNL Y V    L K   + + + I + + +    +  GIIYC +R+   + +  +
Sbjct:   925 SSFNRSNLRYRV----LPKKGVSTLDD-ISRYI-RSKPQHFSGIIYCLSRKECDETSKKM 978

Query:   321 R----RKVNKH------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSS 370
                  R V+ H      +R   Q+ ++ G++ VI AT++FGMGID+ +VRFV+H+ +P S
Sbjct:   979 CKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKS 1038

Query:   371 IPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEY 430
             I  YYQE+GRAGRDG  + C +Y++      ++ ++ +D + +    ++   N   ++ Y
Sbjct:  1039 IEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQYNVKKIHVDNLYRIVGY 1098

Query:   431 CE 432
             CE
Sbjct:  1099 CE 1100


>RGD|1308810 [details] [associations]
            symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
            "Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
            protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
            "bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
            maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
            processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
            evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
            [GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
            binding" evidence=ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=ISO] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
            "helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
            fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
            process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009378 "four-way junction helicase activity"
            evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
            [GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
            evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
            [GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
            "annealing helicase activity" evidence=ISO] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
            [GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045910 "negative regulation of DNA recombination"
            evidence=ISO] [GO:0045950 "negative regulation of mitotic
            recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
            differentiation" evidence=ISO] [GO:0046641 "positive regulation of
            alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
            "regulation of binding" evidence=ISO] [GO:0051259 "protein
            oligomerization" evidence=ISO] [GO:0051276 "chromosome
            organization" evidence=ISO] [GO:0051782 "negative regulation of
            cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
            evidence=ISO] [GO:0000781 "chromosome, telomeric region"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
            GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
            UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
        Length = 999

 Score = 459 (166.6 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 116/273 (42%), Positives = 162/273 (59%)

Query:   148 KTENKAILEELRLVK--PRIKLLYVTPERAVTES-FHYLLQHLVRYNKLAYIVVDEAHCV 204
             KT+++A    L+L K  P IKLLYVTPE+    +     L++L     LA  V+DEAHCV
Sbjct:   732 KTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCV 791

Query:   205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF 264
             S+WGHDFR  Y+R+  LRQ    S+P++ALTATA P V++DI++ LK  +P +VF  S  
Sbjct:   792 SQWGHDFRQDYKRMNMLRQ-RFPSVPVMALTATANPRVQKDILTQLKILRP-QVFSMSFN 849

Query:   265 RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK- 323
             R NL Y V+     K       E+I K    D+     GIIYC +R+    +AD L+R+ 
Sbjct:   850 RHNLKYYVL-PKKPKKVALDCLEWIRKHHPYDS-----GIIYCLSRKECDTMADTLQREG 903

Query:   324 ---------VNKHERSRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIPA 373
                      ++   R  VQ  ++  +   VI ATI+FGMGID+ +VRFVVH  +P S+  
Sbjct:   904 LAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVVHASLPKSVEG 963

Query:   374 YYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 406
             YYQESGRAGRDG  S+C ++++ H    L+ +I
Sbjct:   964 YYQESGRAGRDGEISHCVLFYTYHDVTRLKRLI 996


>UNIPROTKB|P15043 [details] [associations]
            symbol:recQ species:83333 "Escherichia coli K-12"
            [GO:0046914 "transition metal ion binding" evidence=IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
            "DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
            [GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
            helicase activity" evidence=IDA] [GO:0017117 "single-stranded
            DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
            [GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
            "DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
            stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
            catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
            evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
            "SOS response" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
            GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
            GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
            KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
            PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
            ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
            MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
            EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
            KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
            EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
            BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
            BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
            Genevestigator:P15043 Uniprot:P15043
        Length = 609

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 101/262 (38%), Positives = 160/262 (61%)

Query:   144 SGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHC 203
             S QT+ +   ++   R    +I+LLY+ PER + ++F   L+HL  +N +  + VDEAHC
Sbjct:    97 STQTREQQLEVMTGCRT--GQIRLLYIAPERLMLDNF---LEHLAHWNPVL-LAVDEAHC 150

Query:   204 VSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST 263
             +S+WGHDFRP Y  LG+LRQ    ++P +ALTATA+ + +QDI+ +L  N P  + + S+
Sbjct:   151 ISQWGHDFRPEYAALGQLRQ-RFPTLPFMALTATADDTTRQDIVRLLGLNDP--LIQISS 207

Query:   264 F-RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR 322
             F R N+ Y ++  +  K     +  ++++  GK       GIIYC +R    D A  L+ 
Sbjct:   208 FDRPNIRYMLM--EKFKP-LDQLMRYVQEQRGKS------GIIYCNSRAKVEDTAARLQS 258

Query:   323 K----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIP 372
             K          +  + R+ VQE F R ++ ++ AT++FGMGI++ NVRFVVH+ +P +I 
Sbjct:   259 KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIE 318

Query:   373 AYYQESGRAGRDGLQSYCRIYH 394
             +YYQE+GRAGRDGL +   +++
Sbjct:   319 SYYQETGRAGRDGLPAEAMLFY 340


>UNIPROTKB|F1RX70 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
            SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:FP102088 EMBL:FP565873
            Ensembl:ENSSSCT00000017248 Uniprot:F1RX70
        Length = 1409

 Score = 430 (156.4 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
 Identities = 103/255 (40%), Positives = 152/255 (59%)

Query:   150 ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
             ++K +LE+++L K RI  +Y+TPE   + +   LLQHL     +  I VDEAHC+SEWGH
Sbjct:   591 QSKNVLEDIKLGKYRI--VYLTPEFC-SGNLD-LLQHLEANIGITVIAVDEAHCISEWGH 646

Query:   210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269
             DFR ++R LG L+      +PI+ALTAT   S+++DI+  LK   P ++  T   R NL+
Sbjct:   647 DFRNSFRTLGSLKSALP-LVPIVALTATGTSSIREDIVRCLKLKDP-QITCTGFDRPNLY 704

Query:   270 YDV--IFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK---- 323
              +V     D+L+D    +K+F+ +      +     IIYC +R+ T  +   L++     
Sbjct:   705 LEVGRKTGDILQD----LKQFLVQKTSSAWEFEGPTIIYCPSRKMTEQVTAELKKLKLAC 760

Query:   324 ------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE 377
                   ++ H R +V   FMR EI  + ATI+FGMGI++ ++R V+H+G P  I +YYQE
Sbjct:   761 ETYHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGINKADIRKVIHYGAPKEIESYYQE 820

Query:   378 SGRAGRDGLQSYCRI 392
              GRAGRDGLQS C I
Sbjct:   821 IGRAGRDGLQSSCHI 835

 Score = 53 (23.7 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
 Identities = 20/44 (45%), Positives = 21/44 (47%)

Query:    35 ELTAK----LKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             E TAK    LK  FG  SFK  +Q K I  IL    D  V M T
Sbjct:   499 EPTAKQINCLKTYFGHSSFK-PVQWKVIHSILEERRDNVVVMAT 541


>UNIPROTKB|I3LC91 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            [GO:0051345 "positive regulation of hydrolase activity"
            evidence=IEA] [GO:0042981 "regulation of apoptotic process"
            evidence=IEA] [GO:0042803 "protein homodimerization activity"
            evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
            [GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
            "MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
            nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
            processing" evidence=IEA] [GO:0030145 "manganese ion binding"
            evidence=IEA] [GO:0010259 "multicellular organismal aging"
            evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0009267 "cellular response to starvation" evidence=IEA]
            [GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
            "response to oxidative stress" evidence=IEA] [GO:0006284
            "base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
            evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
            DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
            GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
            GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
            GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
            GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
            GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:FP102088 EMBL:FP565873
            Ensembl:ENSSSCT00000022344 Uniprot:I3LC91
        Length = 1507

 Score = 430 (156.4 bits), Expect = 2.1e-41, Sum P(2) = 2.1e-41
 Identities = 103/255 (40%), Positives = 152/255 (59%)

Query:   150 ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
             ++K +LE+++L K RI  +Y+TPE   + +   LLQHL     +  I VDEAHC+SEWGH
Sbjct:   690 QSKNVLEDIKLGKYRI--VYLTPEFC-SGNLD-LLQHLEANIGITVIAVDEAHCISEWGH 745

Query:   210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269
             DFR ++R LG L+      +PI+ALTAT   S+++DI+  LK   P ++  T   R NL+
Sbjct:   746 DFRNSFRTLGSLKSALP-LVPIVALTATGTSSIREDIVRCLKLKDP-QITCTGFDRPNLY 803

Query:   270 YDV--IFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK---- 323
              +V     D+L+D    +K+F+ +      +     IIYC +R+ T  +   L++     
Sbjct:   804 LEVGRKTGDILQD----LKQFLVQKTSSAWEFEGPTIIYCPSRKMTEQVTAELKKLKLAC 859

Query:   324 ------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE 377
                   ++ H R +V   FMR EI  + ATI+FGMGI++ ++R V+H+G P  I +YYQE
Sbjct:   860 ETYHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGINKADIRKVIHYGAPKEIESYYQE 919

Query:   378 SGRAGRDGLQSYCRI 392
              GRAGRDGLQS C I
Sbjct:   920 IGRAGRDGLQSSCHI 934

 Score = 53 (23.7 bits), Expect = 2.1e-41, Sum P(2) = 2.1e-41
 Identities = 20/44 (45%), Positives = 21/44 (47%)

Query:    35 ELTAK----LKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             E TAK    LK  FG  SFK  +Q K I  IL    D  V M T
Sbjct:   598 EPTAKQINCLKTYFGHSSFK-PVQWKVIHSILEERRDNVVVMAT 640


>TIGR_CMR|BA_2818 [details] [associations]
            symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
            species:198094 "Bacillus anthracis str. Ames" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
            "DNA unwinding involved in replication" evidence=ISS] [GO:0006281
            "DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
            evidence=ISS] [GO:0009378 "four-way junction helicase activity"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
            GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
            TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
            RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
            DNASU:1085972 EnsemblBacteria:EBBACT00000011651
            EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
            GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
            KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
            BioCyc:BANT260799:GJAJ-2691-MONOMER
            BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
        Length = 705

 Score = 433 (157.5 bits), Expect = 3.4e-40, P = 3.4e-40
 Identities = 117/333 (35%), Positives = 183/333 (54%)

Query:   111 ISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKP-RIKLLY 169
             ISP++S   ++ + D T +  G S  Y    I S  + TE     + ++L K    KL Y
Sbjct:    63 ISPLIS--LMKDQVD-TLVQNGISATY----INSSISITEAN---QRIQLAKQGHYKLFY 112

Query:   170 VTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSI 229
             V PER   +S  ++ Q L+   K+  I +DEAHC+S+WGHDFRP+Y  +  +  +     
Sbjct:   113 VAPERL--DSMEFVDQ-LIDM-KIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEEP 168

Query:   230 PIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFI 289
              ++ALTATA P V+ DI + L  N+   +  T   R NL + VI     +D  A++ ++I
Sbjct:   169 LVLALTATATPQVRDDICNTLGINQENTIMTTFE-RENLSFSVIKG---QDRNAYLADYI 224

Query:   290 EKCLGKDNKANNCGIIYCRTREHTTDLADALRR---KVNK-------HERSRVQESFMRG 339
                  + N+  + GIIY  TR+    L + L +    V+K       H+R+  QE F+R 
Sbjct:   225 -----RQNQKES-GIIYAATRKVVDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRD 278

Query:   340 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399
             E++V+ AT +FGMGID+ N+R+V+H+ +P ++ +YYQE+GRAGRDGL S C + ++    
Sbjct:   279 EVSVMVATSAFGMGIDKSNIRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDV 338

Query:   400 KSLEYVIKTDTSTKREQLEL-KFKNYLSMLEYC 431
             +   ++I       R   EL K +N   M +YC
Sbjct:   339 QVQRFLIDQSIGESRFSNELEKLQN---MTDYC 368


>UNIPROTKB|O93530 [details] [associations]
            symbol:wrn "Werner syndrome ATP-dependent helicase homolog"
            species:8355 "Xenopus laevis" [GO:0000287 "magnesium ion binding"
            evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
            [GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0030145
            "manganese ion binding" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF01612 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0000287
            GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030145 GO:GO:0006310
            SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 KO:K10900 CTD:7486 HOVERGEN:HBG000325
            EMBL:AF067418 PIR:T14895 RefSeq:NP_001081838.1 UniGene:Xl.404
            ProteinModelPortal:O93530 SMR:O93530 GeneID:398079 KEGG:xla:398079
            Xenbase:XB-GENE-992879 Uniprot:O93530
        Length = 1436

 Score = 416 (151.5 bits), Expect = 4.3e-40, Sum P(2) = 4.3e-40
 Identities = 98/252 (38%), Positives = 149/252 (59%)

Query:   150 ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
             ++K +L++++  K R+  +Y+TPE   +     LLQ L     +  I +DEAHC+SEWGH
Sbjct:   564 QSKNVLQDVKDGKMRV--IYMTPEFC-SRGIS-LLQDLDNRYGITLIAIDEAHCISEWGH 619

Query:   210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269
             DFR  YR LG L++   N +PI+ALTATA PS+++DI   L  + P +V  TS  R NL+
Sbjct:   620 DFRSAYRSLGSLKRMLPN-VPIVALTATASPSIREDITKSLNLHNP-QVTCTSFDRPNLY 677

Query:   270 YDVIFDDLLKDSYAHVKEF-IEKCLGKDNKANNCGIIYCRTREHTTDL-ADALRRKV--- 324
              DV       +    +++F I+K  G   +     I+YC TR+ +  + A+ ++  +   
Sbjct:   678 LDVARKTT--NISIDLRQFLIKKQQGSGWEFEGATIVYCPTRKTSEQVTAELIKLGIACG 735

Query:   325 NKH------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQES 378
               H      +R  V   FMR EI+ + AT++FGMGI++ ++R V+H+G P  + +YYQE 
Sbjct:   736 TYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGMGINKPDIRKVIHYGAPKEMESYYQEI 795

Query:   379 GRAGRDGLQSYC 390
             GRAGRDGL S C
Sbjct:   796 GRAGRDGLPSCC 807

 Score = 54 (24.1 bits), Expect = 4.3e-40, Sum P(2) = 4.3e-40
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query:    32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             S Q ++  LK  FG  SFK  +Q K +  +L    D  V M T
Sbjct:   474 SAQHISC-LKTYFGHSSFK-PVQWKVVHSVLRERRDNLVVMAT 514


>WB|WBGene00006944 [details] [associations]
            symbol:wrn-1 species:6239 "Caenorhabditis elegans"
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040018 "positive regulation of
            multicellular organism growth" evidence=IMP] [GO:0010171 "body
            morphogenesis" evidence=IMP] [GO:0018991 "oviposition"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0007049 "cell cycle" evidence=IMP] [GO:0010212
            "response to ionizing radiation" evidence=IMP] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IDA]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006259 "DNA metabolic
            process" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005662 "DNA replication factor A complex" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0008340 GO:GO:0002009
            GO:GO:0040007 GO:GO:0018991 GO:GO:0005694 GO:GO:0005654
            GO:GO:0002119 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0010212 GO:GO:0007049 GO:GO:0006310 GO:GO:0040035
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K10900 EMBL:FO080970
            PIR:T16087 RefSeq:NP_495324.2 ProteinModelPortal:Q19546 SMR:Q19546
            IntAct:Q19546 MINT:MINT-226609 STRING:Q19546 PaxDb:Q19546
            EnsemblMetazoa:F18C5.2 GeneID:174081 KEGG:cel:CELE_F18C5.2
            UCSC:F18C5.2 CTD:174081 WormBase:F18C5.2 HOGENOM:HOG000016918
            InParanoid:Q19546 OMA:CSGFDRP NextBio:882429 Uniprot:Q19546
        Length = 1056

 Score = 434 (157.8 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 108/319 (33%), Positives = 176/319 (55%)

Query:   111 ISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYV 170
             +SP++S       D  T++V+   D  +L+      T+ E   +   +     RI+ +Y+
Sbjct:   273 VSPLISLM----NDQVTTLVSKGIDAVKLD---GHSTQIEWDQVANNMH----RIRFIYM 321

Query:   171 TPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGN-SI 229
             +PE   ++    LL    ++  ++ + +DEAHCVS+WGHDFR +YR L E+R  +   +I
Sbjct:   322 SPEMVTSQKGLELLTSCRKH--ISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNI 379

Query:   230 PIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFI 289
             P+IALTATA   V+ D+I+ L+  KP  +  TS  R NL+  V      KD    +  F+
Sbjct:   380 PMIALTATATVRVRDDVIANLRLRKPL-ITTTSFDRKNLYISVHSS---KDMAEDLGLFM 435

Query:   290 EKCLGKDNKANNCGIIYCRTREHTTDLADALRR----------KVNKHERSRVQESFMRG 339
             +    K        IIYC+T++   D+   LRR           + K++R +    FMR 
Sbjct:   436 KTDEVKGRHFGGPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRD 495

Query:   340 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399
             +I  I AT++FGMGID+ +VR V+H+G P++I +YYQE GRAGRDG  S CR++ +    
Sbjct:   496 KITTIVATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDL 555

Query:   400 KSLEYVIKTDTSTKREQLE 418
              ++++ ++ ++  K E +E
Sbjct:   556 NTIKFKLR-NSQQKEEVVE 573


>UNIPROTKB|O34748 [details] [associations]
            symbol:recQ "Probable ATP-dependent DNA helicase RecQ"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 HSSP:P15043
            HOGENOM:HOG000044388 EMBL:AF027868 PIR:F69901 RefSeq:NP_389803.1
            ProteinModelPortal:O34748 SMR:O34748
            EnsemblBacteria:EBBACT00000001699 GeneID:939671 KEGG:bsu:BSU19220
            PATRIC:18975693 GenoList:BSU19220 KO:K03654 OMA:HAAYINS
            ProtClustDB:CLSK887416 BioCyc:BSUB:BSU19220-MONOMER
            TIGRFAMs:TIGR01389 Uniprot:O34748
        Length = 591

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 102/292 (34%), Positives = 158/292 (54%)

Query:   151 NKAILEELRLVKP-RIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
             N+ I E L  +K    KL Y+TPER  +  F  +LQ +     +  + +DEAHC+S+WGH
Sbjct:    94 NQEIYERLNGLKEGAYKLFYITPERLTSIEFIRILQGI----DVPLVAIDEAHCISQWGH 149

Query:   210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269
             DFRP+YR +  L +   +   I+ALTATA P V  DI   L   K   V+ T   R NL 
Sbjct:   150 DFRPSYRNIEILFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVY-TGFSRENLT 208

Query:   270 YDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR---KVNK 326
             + V+  +  KD +  + E+++      N  +  GI+Y  TR+    + + L+R   +  +
Sbjct:   209 FKVVKGEN-KDRF--IDEYVQ------NNRHEAGIVYTATRKEADRIYERLKRNQVRAGR 259

Query:   327 HE-------RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESG 379
             +        R   QE F+  E+ V+ AT +FGMGID+ N+RFV+H  +P  + +YYQE+G
Sbjct:   260 YHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAG 319

Query:   380 RAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYC 431
             RAGRDGL S C +  S        ++I+     ++++ +LK      M++YC
Sbjct:   320 RAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLK--KLRQMVDYC 369


>DICTYBASE|DDB_G0268512 [details] [associations]
            symbol:wrn "Werner syndrome protein" species:44689
            "Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
            "DNA replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
            GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
            EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
            EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
            OMA:FLFNKTE Uniprot:B0G0Y4
        Length = 1136

 Score = 432 (157.1 bits), Expect = 2.0e-39, P = 2.0e-39
 Identities = 103/283 (36%), Positives = 166/283 (58%)

Query:   128 SIVTGRS-DLYQLELIVSGQTKTENKAILEELRLV-KPRIKLLYVTPERAVTESFHYLLQ 185
             S++T ++  L  L + V+ +  ++ K+  +E  L+ K    L+Y+TPER + E  +  + 
Sbjct:   352 SLITDQTLKLKSLGIKVT-KLSSDIKSSSKEYELIFKGYYNLVYITPERIINE--YQSIG 408

Query:   186 HLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELR-QFTGNSIPIIALTATAEPSVKQ 244
              LVR  K+    +DEAHC+S+WGH FR +YR+L ELR QF   ++PI+A+TATA  S++ 
Sbjct:   409 ELVRNEKICLFAIDEAHCISQWGHSFRESYRKLQELRNQFP--TVPIMAVTATATKSIES 466

Query:   245 DIISVLKF-NKPYKVFKTSTFRSNLFYDVIFDD-LLKDSYAHVKEFIEKCLGKDNKANNC 302
             DII+ L   N   K+FK+S  R N++Y VI  D L+ + +  + + + +        +N 
Sbjct:   467 DIINNLGIGNGNCKMFKSSKNRPNIYYKVIIKDKLVSNDFKMILDILLETRKTIGVVSNS 526

Query:   303 GIIYCRTREHTTDL----------ADALRRKVNKHERSRVQESFMRGEINVITATISFGM 352
              IIYC T +   +L          ++    ++   +R    ++F+  +  VI ATI+FGM
Sbjct:   527 TIIYCTTIQIANELNRFLCDNKIQSNVYHSQLGDKQRDETLKNFLFNKTEVIVATIAFGM 586

Query:   353 GIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHS 395
             GID+ +VR ++++G   S+  +YQESGRAGRDGLQS   I +S
Sbjct:   587 GIDKHDVRLIINYGASKSVEDFYQESGRAGRDGLQSLSLIIYS 629


>UNIPROTKB|E1BEE6 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            [GO:0051345 "positive regulation of hydrolase activity"
            evidence=IEA] [GO:0042981 "regulation of apoptotic process"
            evidence=IEA] [GO:0042803 "protein homodimerization activity"
            evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
            [GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
            "MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
            nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
            processing" evidence=IEA] [GO:0030145 "manganese ion binding"
            evidence=IEA] [GO:0010259 "multicellular organismal aging"
            evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0009267 "cellular response to starvation" evidence=IEA]
            [GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
            "response to oxidative stress" evidence=IEA] [GO:0006284
            "base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
            evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
            DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
            GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
            GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
            GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
            GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
            GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:DAAA02060458
            EMBL:DAAA02060459 EMBL:DAAA02060460 EMBL:DAAA02060461
            EMBL:DAAA02060462 EMBL:DAAA02060463 EMBL:DAAA02060464
            EMBL:DAAA02060465 EMBL:DAAA02060466 EMBL:DAAA02060467
            EMBL:DAAA02060468 EMBL:DAAA02060469 EMBL:DAAA02060470
            EMBL:DAAA02060471 EMBL:DAAA02060472 EMBL:DAAA02060473
            EMBL:DAAA02060474 EMBL:DAAA02060475 EMBL:DAAA02060476
            EMBL:DAAA02060477 EMBL:DAAA02060478 EMBL:DAAA02060479
            EMBL:DAAA02060480 EMBL:DAAA02060481 EMBL:DAAA02060482
            EMBL:DAAA02060483 EMBL:DAAA02060484 EMBL:DAAA02060485
            EMBL:DAAA02060486 EMBL:DAAA02060487 EMBL:DAAA02060488
            EMBL:DAAA02060489 EMBL:DAAA02060490 EMBL:DAAA02060491
            EMBL:DAAA02060492 EMBL:DAAA02060493 EMBL:DAAA02060494
            IPI:IPI00920936 Ensembl:ENSBTAT00000028778 Uniprot:E1BEE6
        Length = 1404

 Score = 398 (145.2 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
 Identities = 101/257 (39%), Positives = 153/257 (59%)

Query:   150 ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
             ++K ++E+++L K RI  +Y+TPE   + +   LL+ L     +  I VDEAHC+SEWGH
Sbjct:   589 QSKNVVEDIKLGKYRI--VYLTPEFC-SGNLE-LLRQLEANIGITLIAVDEAHCISEWGH 644

Query:   210 DFRPTYRRLGELR-QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNL 268
             DFR ++R LG L+ +F    +PI+ALTATA  SV++DI+  L    P ++  T   R NL
Sbjct:   645 DFRNSFRDLGCLKAEFP--KVPIVALTATAGSSVREDIVCCLNLKDP-QITCTGFDRPNL 701

Query:   269 FYDV--IFDDLLKDSYAHVKEFIEKCLGKDN-KANNCGIIYCRTREHTTDLADALRR-KV 324
             + +V     D+L+D    +K+F+  C      +     IIYC +R+ T  +   L++ K+
Sbjct:   702 YLEVGRKTGDILQD----LKQFLV-CKSSSAWEFEGPTIIYCPSRKMTEQVTAELKKLKL 756

Query:   325 ---NKHE------RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY 375
                  H       R +V   FMR EI  + AT++FGMGI++ ++R V+H+G P  + +YY
Sbjct:   757 ACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVAFGMGINKADIRQVIHYGAPKEMESYY 816

Query:   376 QESGRAGRDGLQSYCRI 392
             QE GRAGRDGLQS C +
Sbjct:   817 QEIGRAGRDGLQSSCHV 833

 Score = 56 (24.8 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
 Identities = 21/73 (28%), Positives = 34/73 (46%)

Query:     2 AEGESKDASSAVGKSSSLTGNQQDRKGGKVSEQELTAKLKALFGFDSFKCELQKKAIRHI 61
             +E + +D + AV +        +D    + +E+++   LK  FG  SFK  +Q K I  +
Sbjct:   472 SEEDDEDENEAVEEEKEA---DEDCLLPRPTEKQINC-LKTYFGHSSFK-PVQWKVIHSV 526

Query:    62 LLRTHDIFVSMPT 74
             L    D  V M T
Sbjct:   527 LEERRDNVVVMTT 539


>UNIPROTKB|Q14191 [details] [associations]
            symbol:WRN "Werner syndrome ATP-dependent helicase"
            species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0001302 "replicative cell aging" evidence=IEA] [GO:0040009
            "regulation of growth rate" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0031297 "replication fork processing" evidence=IMP;IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0000723 "telomere
            maintenance" evidence=IMP] [GO:0007569 "cell aging" evidence=IMP]
            [GO:0010259 "multicellular organismal aging" evidence=IMP]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
            [GO:0007568 "aging" evidence=NAS] [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA;IMP]
            [GO:0004386 "helicase activity" evidence=IDA] [GO:0008408 "3'-5'
            exonuclease activity" evidence=IDA] [GO:0042803 "protein
            homodimerization activity" evidence=IDA] [GO:0032403 "protein
            complex binding" evidence=IDA] [GO:0000731 "DNA synthesis involved
            in DNA repair" evidence=IDA] [GO:0010225 "response to UV-C"
            evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
            [GO:0032389 "MutLalpha complex" evidence=IDA] [GO:0000403 "Y-form
            DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA helicase
            activity" evidence=IDA] [GO:0000405 "bubble DNA binding"
            evidence=IDA] [GO:0009378 "four-way junction helicase activity"
            evidence=IDA] [GO:0051880 "G-quadruplex DNA binding" evidence=IDA]
            [GO:0006284 "base-excision repair" evidence=IDA] [GO:0051345
            "positive regulation of hydrolase activity" evidence=IDA]
            [GO:0006979 "response to oxidative stress" evidence=IDA]
            [GO:0005813 "centrosome" evidence=IDA] [GO:0000287 "magnesium ion
            binding" evidence=IDA] [GO:0030145 "manganese ion binding"
            evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IDA]
            [GO:0006302 "double-strand break repair" evidence=IMP] [GO:0005654
            "nucleoplasm" evidence=IDA] [GO:0071480 "cellular response to gamma
            radiation" evidence=IDA] [GO:0004527 "exonuclease activity"
            evidence=IDA] [GO:0009267 "cellular response to starvation"
            evidence=IDA] [GO:0032066 "nucleolus to nucleoplasm transport"
            evidence=IDA] [GO:0042981 "regulation of apoptotic process"
            evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
            catabolic process" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
            evidence=IMP;IDA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00474 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0005813 Pathway_Interaction_DB:telomerasepathway
            GO:GO:0042803 GO:GO:0005654 GO:GO:0006979 GO:GO:0005730
            GO:GO:0042981 GO:GO:0032403 GO:GO:0000287 GO:GO:0006284
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
            GO:GO:0006310 GO:GO:0009267 GO:GO:0004003 SUPFAM:SSF53098
            MIM:114500 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345 GO:GO:0010259
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0000723 GO:GO:0010225 GO:GO:0007569 eggNOG:COG0514
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403
            GO:GO:0000731 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
            GO:GO:0031297 GO:GO:0043138 GO:GO:0032066 KO:K10900 EMBL:L76937
            EMBL:AY818673 EMBL:AF091214 EMBL:AF181897 EMBL:AF181896
            EMBL:AY442327 EMBL:AC084736 IPI:IPI00029107 RefSeq:NP_000544.2
            UniGene:Hs.632050 PDB:2AXL PDB:2DGZ PDB:2E1E PDB:2E1F PDB:2FBT
            PDB:2FBV PDB:2FBX PDB:2FBY PDB:2FC0 PDB:3AAF PDBsum:2AXL
            PDBsum:2DGZ PDBsum:2E1E PDBsum:2E1F PDBsum:2FBT PDBsum:2FBV
            PDBsum:2FBX PDBsum:2FBY PDBsum:2FC0 PDBsum:3AAF DisProt:DP00443
            ProteinModelPortal:Q14191 SMR:Q14191 DIP:DIP-31380N IntAct:Q14191
            MINT:MINT-95856 STRING:Q14191 PhosphoSite:Q14191 DMDM:6136393
            PaxDb:Q14191 PRIDE:Q14191 Ensembl:ENST00000298139 GeneID:7486
            KEGG:hsa:7486 UCSC:uc003xio.4 CTD:7486 GeneCards:GC08P030948
            H-InvDB:HIX0007441 HGNC:HGNC:12791 HPA:HPA028661 MIM:277700
            MIM:604611 neXtProt:NX_Q14191 Orphanet:902 PharmGKB:PA367
            HOGENOM:HOG000146447 HOVERGEN:HBG000325 InParanoid:Q14191
            OMA:GIEGDQW OrthoDB:EOG4DNF3J PhylomeDB:Q14191
            EvolutionaryTrace:Q14191 GenomeRNAi:7486 NextBio:29326 Bgee:Q14191
            CleanEx:HS_WRN Genevestigator:Q14191 GermOnline:ENSG00000165392
            Uniprot:Q14191
        Length = 1432

 Score = 401 (146.2 bits), Expect = 2.1e-38, Sum P(2) = 2.1e-38
 Identities = 109/300 (36%), Positives = 163/300 (54%)

Query:   145 GQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204
             G  ++EN  +L +++L K RI  +YVTPE         LLQ L     +  I VDEAHC+
Sbjct:   620 GSAQSEN--VLTDIKLGKYRI--VYVTPEYCSGNMG--LLQQLEADIGITLIAVDEAHCI 673

Query:   205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF 264
             SEWGHDFR ++R+LG L+      +PI+ALTATA  S+++DI+  L    P ++  T   
Sbjct:   674 SEWGHDFRDSFRKLGSLKTALP-MVPIVALTATASSSIREDIVRCLNLRNP-QITCTGFD 731

Query:   265 RSNLFYDVI--FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR 322
             R NL+ +V     ++L+D    ++ F+ K      +     IIYC +R+ T  +   LR 
Sbjct:   732 RPNLYLEVRRKTGNILQD----LQPFLVKT-SSHWEFEGPTIIYCPSRKMTQQVTGELR- 785

Query:   323 KVNK-----HE------RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSI 371
             K+N      H       R  +   F+R EI  + ATI+FGMGI++ ++R V+H+G P  +
Sbjct:   786 KLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKADIRQVIHYGAPKDM 845

Query:   372 PAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLEL-KFKNYLSMLEY 430
              +YYQE GRAGRDGLQS C +  +        +++   T  + E+  L K K    M +Y
Sbjct:   846 ESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLL---TEIRNEKFRLYKLKMMAKMEKY 902

 Score = 53 (23.7 bits), Expect = 2.1e-38, Sum P(2) = 2.1e-38
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query:    32 SEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             +E+++T  LK  FG  SFK  +Q K I  +L    D    M T
Sbjct:   533 NEEQVTC-LKMYFGHSSFK-PVQWKVIHSVLEERRDNVAVMAT 573


>TAIR|locus:2197555 [details] [associations]
            symbol:RECQL2 "RECQ helicase L2" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
            repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
            [GO:0009378 "four-way junction helicase activity" evidence=IDA]
            [GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
            "mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
            evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
            evidence=RCA] [GO:0045492 "xylan biosynthetic process"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
            GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
            EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
            RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
            ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
            PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
            KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
            OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
            Genevestigator:Q9FT73 Uniprot:Q9FT73
        Length = 705

 Score = 416 (151.5 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 99/267 (37%), Positives = 151/267 (56%)

Query:   141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYL--LQHLVRYNKLAYIVV 198
             ++ S   K   K + + L   +  +K+LYVTPE+ V++S  ++  L+      +L+ I +
Sbjct:   158 MLTSTSGKENEKFVYKALEKGEDDLKILYVTPEK-VSKSKRFMSKLEKCHNAGRLSLISI 216

Query:   199 DEAHCVSEWGHDFRPTYRRLGELR-QFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYK 257
             DEAHC S+WGHDFRP Y+ L  L+ QF    +P++ALTATA   V+ D+I +L   K  K
Sbjct:   217 DEAHCCSQWGHDFRPDYKNLSILKTQFP--KVPMVALTATATQKVQNDLIEMLHIPKCVK 274

Query:   258 VFKTSTFRSNLFYDVIFDDLL-KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDL 316
              F +S  R NLFY V     + K     + EFI +        N  GI+YC +R+    +
Sbjct:   275 -FVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSN----NESGIVYCFSRKECEQI 329

Query:   317 ADALRRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWG 366
             A  LR +          ++ + R +V   + + ++ VI  T++FGMGI++ +VRFV+H  
Sbjct:   330 AGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHS 389

Query:   367 MPSSIPAYYQESGRAGRDGLQSYCRIY 393
             +  S+  YYQESGRAGRDGL S C ++
Sbjct:   390 LSKSMETYYQESGRAGRDGLPSECILF 416


>UNIPROTKB|J3KSL7 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR002464
            InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00690 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
            EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000580078
            Uniprot:J3KSL7
        Length = 198

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 79/160 (49%), Positives = 107/160 (66%)

Query:   150 ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
             E K +L +L   KP+ K+LY+TPE A + SF   L  LV  + L+Y+VVDEAHCVS+WGH
Sbjct:    12 ERKELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGH 71

Query:   210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269
             DFRP Y RLG LR   G++ P +ALTATA P V++D+ + L   KP  +FKT  FR+NLF
Sbjct:    72 DFRPDYLRLGALRSRLGHA-PCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLF 130

Query:   270 YDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGII-YCR 308
             YDV F +L+ D Y ++K+F  K LG++     C  + YC+
Sbjct:   131 YDVQFKELISDPYGNLKDFCLKALGQEADKGVCRPLEYCQ 170


>WB|WBGene00019334 [details] [associations]
            symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
            RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
            ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
            GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
            WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
            NextBio:887386 Uniprot:Q9TXJ8
        Length = 631

 Score = 410 (149.4 bits), Expect = 5.9e-38, P = 5.9e-38
 Identities = 109/296 (36%), Positives = 157/296 (53%)

Query:   147 TKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAHCVS 205
             +K E K + + +     + +LLYVTPE+ A ++     L+  +    L  I +DE HC S
Sbjct:   184 SKEEAKRVEDAITNKDSKFRLLYVTPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCS 243

Query:   206 EWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF 264
             +WGHDFR  Y  L  L RQF G  +PI+ LTATA  +V  D+  +L        F+    
Sbjct:   244 QWGHDFRTDYSFLNVLKRQFKG--VPILGLTATATSNVLDDVKDMLGIQAAL-TFRAGFN 300

Query:   265 RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK- 323
             RSNL Y V+     +D      E I K + +D  A   GIIYC +R     +A AL+   
Sbjct:   301 RSNLKYKVVQKPGSEDECT---EEIAKTIKRDF-AGQTGIIYCLSRNDCEKVAKALKSHG 356

Query:   324 -VNKH--------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAY 374
                KH        +RS   + ++ G+I VI AT++FGMGID+ NVRFV+H  +P SI  Y
Sbjct:   357 IKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGIDKPNVRFVIHHSLPKSIENY 416

Query:   375 YQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEY 430
             YQESGRAGRDG  + C +Y+       L  + K  +  ++E+  ++  N  +M+ Y
Sbjct:   417 YQESGRAGRDGQPATCILYYR------LADIFKQSSMVQQERTGIQ--NLYNMVRY 464


>UNIPROTKB|F1PZR2 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010396
            Uniprot:F1PZR2
        Length = 1336

 Score = 418 (152.2 bits), Expect = 8.6e-38, P = 8.6e-38
 Identities = 100/256 (39%), Positives = 148/256 (57%)

Query:   150 ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
             ++K +LE+++L K RI  +Y+TPE      F  LLQ L     +  I VDEAHC+SEWGH
Sbjct:   600 QSKNVLEDIKLGKYRI--VYITPEFCSGNLF--LLQQLQADIGITLIAVDEAHCISEWGH 655

Query:   210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269
             DFR ++R LG L+     S+PI+ALTATA  S+++DI+  L    P ++  T   R NL+
Sbjct:   656 DFRSSFRTLGSLKAILP-SVPIVALTATASSSIREDIVRCLNLKNP-QITCTGFDRPNLY 713

Query:   270 YDVI--FDDLLKDSYAHVKEF-IEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--- 323
              +V      +L+D    + +F ++K      +     IIYC +R+ T  +   LR+    
Sbjct:   714 LEVRRKTGSILQD----LDQFLVQKTRNSIWEFEGPTIIYCPSRKTTEQVTAELRKLKLA 769

Query:   324 -------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQ 376
                    ++   R  +   FMR EI  + ATI+FGMGI++ ++R V+H+G P  + +YYQ
Sbjct:   770 CGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIHYGAPKEMESYYQ 829

Query:   377 ESGRAGRDGLQSYCRI 392
             E GRAGRDGLQS C +
Sbjct:   830 EIGRAGRDGLQSSCHV 845


>MGI|MGI:109635 [details] [associations]
            symbol:Wrn "Werner syndrome homolog (human)" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000403
            "Y-form DNA binding" evidence=ISO] [GO:0000405 "bubble DNA binding"
            evidence=ISO] [GO:0000723 "telomere maintenance"
            evidence=ISO;IGI;IMP] [GO:0000731 "DNA synthesis involved in DNA
            repair" evidence=ISO] [GO:0001302 "replicative cell aging"
            evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678 "DNA helicase
            activity" evidence=ISO] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISO] [GO:0004386 "helicase activity" evidence=ISO]
            [GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
            "exonuclease activity" evidence=ISO] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005654 "nucleoplasm" evidence=ISO;IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0005813 "centrosome" evidence=ISO]
            [GO:0006139 "nucleobase-containing compound metabolic process"
            evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
            [GO:0006259 "DNA metabolic process" evidence=ISO;IMP] [GO:0006260
            "DNA replication" evidence=ISO;IMP] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006284 "base-excision repair" evidence=ISO]
            [GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
            damage stimulus" evidence=ISO] [GO:0006979 "response to oxidative
            stress" evidence=ISO] [GO:0007569 "cell aging" evidence=ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008152 "metabolic process" evidence=IEA] [GO:0008408 "3'-5'
            exonuclease activity" evidence=ISO;IDA] [GO:0009267 "cellular
            response to starvation" evidence=ISO] [GO:0009378 "four-way
            junction helicase activity" evidence=ISO] [GO:0010225 "response to
            UV-C" evidence=ISO] [GO:0010259 "multicellular organismal aging"
            evidence=ISO;IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISO] [GO:0030145 "manganese
            ion binding" evidence=ISO] [GO:0031297 "replication fork
            processing" evidence=ISO] [GO:0032066 "nucleolus to nucleoplasm
            transport" evidence=ISO] [GO:0032403 "protein complex binding"
            evidence=ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
            [GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042803
            "protein homodimerization activity" evidence=ISO] [GO:0042981
            "regulation of apoptotic process" evidence=ISO] [GO:0043138 "3'-5'
            DNA helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=IEA] [GO:0044237 "cellular
            metabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0051345 "positive regulation of hydrolase
            activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
            evidence=ISO] [GO:0071480 "cellular response to gamma radiation"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00474 SMART:SM00490 SMART:SM00956 MGI:MGI:109635
            GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
            GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145 GO:GO:0006310
            GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408
            GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000723 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0032066 KO:K10900 CTD:7486
            HOGENOM:HOG000146447 HOVERGEN:HBG000325 OMA:GIEGDQW
            OrthoDB:EOG4DNF3J EMBL:D86527 EMBL:D86526 EMBL:AF091215
            EMBL:AF091216 EMBL:AF241636 EMBL:AC153789 EMBL:AC115809
            EMBL:BC050921 EMBL:BC060700 IPI:IPI00113830 PIR:T17452 PIR:T30247
            RefSeq:NP_001116294.1 RefSeq:NP_035851.3 UniGene:Mm.228805 PDB:2E6L
            PDB:2E6M PDBsum:2E6L PDBsum:2E6M ProteinModelPortal:O09053
            SMR:O09053 DIP:DIP-27642N STRING:O09053 PhosphoSite:O09053
            PaxDb:O09053 PRIDE:O09053 Ensembl:ENSMUST00000033990
            Ensembl:ENSMUST00000033991 GeneID:22427 KEGG:mmu:22427
            InParanoid:Q80YP9 EvolutionaryTrace:O09053 NextBio:302865
            Bgee:O09053 CleanEx:MM_WRN Genevestigator:O09053
            GermOnline:ENSMUSG00000031583 Uniprot:O09053
        Length = 1401

 Score = 396 (144.5 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
 Identities = 100/256 (39%), Positives = 149/256 (58%)

Query:   150 ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
             ++K IL +++L K R+  +Y+TPE   + +   LLQ L     +  I VDEAHC+SEWGH
Sbjct:   587 QSKNILGDVKLGKYRV--IYITPEFC-SGNLD-LLQQLDSSIGITLIAVDEAHCISEWGH 642

Query:   210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269
             DFR ++R LG L+      +P+IAL+ATA  S+++DIIS L    P ++  T   R NL+
Sbjct:   643 DFRSSFRMLGSLKTALP-LVPVIALSATASSSIREDIISCLNLKDP-QITCTGFDRPNLY 700

Query:   270 YDV--IFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNK- 326
              +V     ++L+D    +K F+ +      +     IIYC +R+ T  +   L  K+N  
Sbjct:   701 LEVGRKTGNILQD----LKPFLVRKASSAWEFEGPTIIYCPSRKMTEQVTAELG-KLNLA 755

Query:   327 ----H------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQ 376
                 H      ER  V   F+R EI  + AT++FGMGI++ ++R V+H+G P  + +YYQ
Sbjct:   756 CRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADIRKVIHYGAPKEMESYYQ 815

Query:   377 ESGRAGRDGLQSYCRI 392
             E GRAGRDGLQS C +
Sbjct:   816 EIGRAGRDGLQSSCHL 831

 Score = 51 (23.0 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query:    40 LKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             LK  FG  SFK  +Q K I  +L    D  V M T
Sbjct:   504 LKTYFGHSSFK-PVQWKVIHSVLEERRDNVVVMAT 537


>UNIPROTKB|F1NAR0 [details] [associations]
            symbol:F1NAR0 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
            "magnesium ion binding" evidence=IEA] [GO:0000403 "Y-form DNA
            binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA]
            [GO:0001302 "replicative cell aging" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005813 "centrosome" evidence=IEA] [GO:0006284 "base-excision
            repair" evidence=IEA] [GO:0006979 "response to oxidative stress"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0009267 "cellular response to starvation"
            evidence=IEA] [GO:0009378 "four-way junction helicase activity"
            evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
            [GO:0010259 "multicellular organismal aging" evidence=IEA]
            [GO:0030145 "manganese ion binding" evidence=IEA] [GO:0031297
            "replication fork processing" evidence=IEA] [GO:0032066 "nucleolus
            to nucleoplasm transport" evidence=IEA] [GO:0032389 "MutLalpha
            complex" evidence=IEA] [GO:0032403 "protein complex binding"
            evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
            [GO:0042803 "protein homodimerization activity" evidence=IEA]
            [GO:0042981 "regulation of apoptotic process" evidence=IEA]
            [GO:0051345 "positive regulation of hydrolase activity"
            evidence=IEA] [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS51194
            SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
            GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
            GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
            GO:GO:0008408 GO:GO:0051345 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
            GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
            GO:GO:0032066 OMA:GIEGDQW EMBL:AADN02016143 IPI:IPI01017120
            Ensembl:ENSGALT00000016720 Uniprot:F1NAR0
        Length = 1367

 Score = 395 (144.1 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
 Identities = 93/241 (38%), Positives = 143/241 (59%)

Query:   166 KLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFT 225
             +++Y+TPE   + +   LLQ + R   +A I VDEAHC+SEWGHDFR ++R+L  L++  
Sbjct:   548 RVIYMTPEFC-SGNLE-LLQDIDRTTGIALIAVDEAHCISEWGHDFRISFRKLNSLKKAL 605

Query:   226 GNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV--IFDDLLKDSYA 283
               S+PI+ALTATA PS+++DI++ L    P +V  TS  R NL+ +V     + L+D   
Sbjct:   606 P-SVPIVALTATASPSIREDIVNCLNLKNP-QVTCTSFDRPNLYLEVGRQSGNTLRD--- 660

Query:   284 HVKEFIEKCLGKDNKANNCG--IIYCRTREHTTDLADALRRK----------VNKHERSR 331
              +K+F+ +  G  +     G  IIYC +R+ T  +   L +           +   +R  
Sbjct:   661 -LKQFLTR-KGSSSTYEFEGPTIIYCPSRKATEQVMFELNKLGVTCGAYHAGMGIQKRRD 718

Query:   332 VQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCR 391
                 FMR EI  + AT++FGMGI++ ++R V+H+G P  + +YYQE GRAGRDGL + C 
Sbjct:   719 THHQFMRDEIQCVVATVAFGMGINKADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASCH 778

Query:   392 I 392
             +
Sbjct:   779 V 779

 Score = 51 (23.0 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
 Identities = 16/37 (43%), Positives = 18/37 (48%)

Query:    38 AKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             A LK  FG  SFK  +Q K I  +L    D  V M T
Sbjct:   449 ACLKTYFGHSSFK-PVQWKVIHSVLEDKRDNLVVMAT 484


>UNIPROTKB|F1PZR3 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010395
            Uniprot:F1PZR3
        Length = 1499

 Score = 417 (151.9 bits), Expect = 1.3e-37, P = 1.3e-37
 Identities = 99/255 (38%), Positives = 147/255 (57%)

Query:   150 ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
             ++K +LE+++L K RI  +Y+TPE      F  LLQ L     +  I VDEAHC+SEWGH
Sbjct:   681 QSKNVLEDIKLGKYRI--VYITPEFCSGNLF--LLQQLQADIGITLIAVDEAHCISEWGH 736

Query:   210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269
             DFR ++R LG L+     S+PI+ALTATA  S+++DI+  L    P ++  T   R NL+
Sbjct:   737 DFRSSFRTLGSLKAILP-SVPIVALTATASSSIREDIVRCLNLKNP-QITCTGFDRPNLY 794

Query:   270 YDVI--FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK---- 323
              +V      +L+D    + +F+ +      +     IIYC +R+ T  +   LR+     
Sbjct:   795 LEVRRKTGSILQD----LDQFLVQKTSSIWEFEGPTIIYCPSRKTTEQVTAELRKLKLAC 850

Query:   324 ------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE 377
                   ++   R  +   FMR EI  + ATI+FGMGI++ ++R V+H+G P  + +YYQE
Sbjct:   851 GAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIHYGAPKEMESYYQE 910

Query:   378 SGRAGRDGLQSYCRI 392
              GRAGRDGLQS C +
Sbjct:   911 IGRAGRDGLQSSCHV 925


>UNIPROTKB|F1PUF8 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000037050
            OMA:TERICLM Uniprot:F1PUF8
        Length = 1574

 Score = 417 (151.9 bits), Expect = 1.4e-37, P = 1.4e-37
 Identities = 99/255 (38%), Positives = 147/255 (57%)

Query:   150 ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
             ++K +LE+++L K RI  +Y+TPE      F  LLQ L     +  I VDEAHC+SEWGH
Sbjct:   713 QSKNVLEDIKLGKYRI--VYITPEFCSGNLF--LLQQLQADIGITLIAVDEAHCISEWGH 768

Query:   210 DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLF 269
             DFR ++R LG L+     S+PI+ALTATA  S+++DI+  L    P ++  T   R NL+
Sbjct:   769 DFRSSFRTLGSLKAILP-SVPIVALTATASSSIREDIVRCLNLKNP-QITCTGFDRPNLY 826

Query:   270 YDVI--FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK---- 323
              +V      +L+D    + +F+ +      +     IIYC +R+ T  +   LR+     
Sbjct:   827 LEVRRKTGSILQD----LDQFLVQKTSSIWEFEGPTIIYCPSRKTTEQVTAELRKLKLAC 882

Query:   324 ------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE 377
                   ++   R  +   FMR EI  + ATI+FGMGI++ ++R V+H+G P  + +YYQE
Sbjct:   883 GAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIHYGAPKEMESYYQE 942

Query:   378 SGRAGRDGLQSYCRI 392
              GRAGRDGLQS C +
Sbjct:   943 IGRAGRDGLQSSCHV 957


>MGI|MGI:103021 [details] [associations]
            symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
            strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
            unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
            SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
            GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
            HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
            EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
            IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
            UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
            PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
            Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
            KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
            Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
            GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
        Length = 648

 Score = 375 (137.1 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
 Identities = 96/267 (35%), Positives = 146/267 (54%)

Query:   141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVD 199
             ++ +  +K   K +  E+     ++KL+YVTPE+ A ++ F   L+      +L    VD
Sbjct:   160 MLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGAAVD 219

Query:   200 EAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258
             E HC S+WGHDFRP Y+ LG L RQF   S+  + LTATA   V +D+  +L   K    
Sbjct:   220 EVHCCSQWGHDFRPDYKALGILKRQFPNASL--MGLTATATNHVLKDVQKILCVGKCL-T 276

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAH-VKEFIEKCLGKDNKANNCGIIYCRTREHTTDLA 317
             F  S  R NLFY+V      K S A    E I K +    K  + GIIYC +++ +  + 
Sbjct:   277 FTASFNRPNLFYEV----RQKPSSAEDFTEDIVKLINGRYKGQS-GIIYCFSQKDSEQIT 331

Query:   318 DALRR----------KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGM 367
              +L++           +   ++++V   +   E+ V+ AT++FGMGID+ +VRFV+H  M
Sbjct:   332 ISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSM 391

Query:   368 PSSIPAYYQESGRAGRDGLQSYCRIYH 394
               S+  YYQESGRAGRD  ++ C +Y+
Sbjct:   392 SKSMENYYQESGRAGRDDSRADCILYY 418

 Score = 52 (23.4 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query:     3 EGESKDASSAVGKSSSLTGNQQDRKG-GKVSEQELTAKLKALFGFDSFKCELQKKAIRHI 61
             E  S +ASS +  S +   N++D    GKV +      L+ +F    F+  LQ + I ++
Sbjct:    51 EDSSAEASSDLDTSPA-AWNKEDFPWFGKVKDV-----LQNVFKLQKFR-PLQLETI-NV 102

Query:    62 LLRTHDIFVSMPT 74
              +   DIF+ MPT
Sbjct:   103 TMARKDIFLVMPT 115


>UNIPROTKB|Q47WD5 [details] [associations]
            symbol:CPS_4237 "RecQ domain protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
            evidence=ND] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
            GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
            ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
            KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
            ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
            Uniprot:Q47WD5
        Length = 690

 Score = 385 (140.6 bits), Expect = 5.4e-37, Sum P(2) = 5.4e-37
 Identities = 98/257 (38%), Positives = 148/257 (57%)

Query:   165 IKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQF 224
             IK+L V+ ER   E F   ++ +     ++ +VVDEAHC+SEWGH+FRP Y +L    Q 
Sbjct:   116 IKVLMVSVERFKNERFRQFIESV----PVSMLVVDEAHCISEWGHNFRPDYLKLPSYCQA 171

Query:   225 TGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAH 284
                S+ ++ LTATA   VKQD+ +       + + +T  +RSNL  D+    +L  + AH
Sbjct:   172 LNISL-VLLLTATATRKVKQDMAAKFAIRDEH-IVQTGFYRSNL--DL---SVLPVTQAH 224

Query:   285 VKEFIEKCLGKDNKANNCGIIYCRTREHTTD-LADALRRK-VNK---HE------RSRVQ 333
               + +E+ +     A   GI+Y  T +H+ + +A  L+++ +N    H       RS++Q
Sbjct:   225 KNKQLEQIISAQQGA---GIVYV-TLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQ 280

Query:   334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 393
             + FM G+I VI ATI+FGMGID+ N+RFV+H+ +P SI  Y QE GRAGRDGL S C   
Sbjct:   281 QDFMAGKIQVIVATIAFGMGIDKSNIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQCFTL 340

Query:   394 HSEHSKKSLEYVIKTDT 410
              +     ++E  +  DT
Sbjct:   341 ANLDGLNTVENFVYGDT 357

 Score = 42 (19.8 bits), Expect = 5.4e-37, Sum P(2) = 5.4e-37
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query:    32 SEQE-LTAKLKALFGFDSFKCELQKKAIRHIL 62
             S +E L A L   FGFD F+   Q++ I  +L
Sbjct:     8 SHKECLKASLLETFGFDGFRPG-QEQTITQLL 38


>TIGR_CMR|CPS_4237 [details] [associations]
            symbol:CPS_4237 "RecQ domain protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0004386 "helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
            GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
            ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
            KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
            ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
            Uniprot:Q47WD5
        Length = 690

 Score = 385 (140.6 bits), Expect = 5.4e-37, Sum P(2) = 5.4e-37
 Identities = 98/257 (38%), Positives = 148/257 (57%)

Query:   165 IKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQF 224
             IK+L V+ ER   E F   ++ +     ++ +VVDEAHC+SEWGH+FRP Y +L    Q 
Sbjct:   116 IKVLMVSVERFKNERFRQFIESV----PVSMLVVDEAHCISEWGHNFRPDYLKLPSYCQA 171

Query:   225 TGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAH 284
                S+ ++ LTATA   VKQD+ +       + + +T  +RSNL  D+    +L  + AH
Sbjct:   172 LNISL-VLLLTATATRKVKQDMAAKFAIRDEH-IVQTGFYRSNL--DL---SVLPVTQAH 224

Query:   285 VKEFIEKCLGKDNKANNCGIIYCRTREHTTD-LADALRRK-VNK---HE------RSRVQ 333
               + +E+ +     A   GI+Y  T +H+ + +A  L+++ +N    H       RS++Q
Sbjct:   225 KNKQLEQIISAQQGA---GIVYV-TLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQ 280

Query:   334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 393
             + FM G+I VI ATI+FGMGID+ N+RFV+H+ +P SI  Y QE GRAGRDGL S C   
Sbjct:   281 QDFMAGKIQVIVATIAFGMGIDKSNIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQCFTL 340

Query:   394 HSEHSKKSLEYVIKTDT 410
              +     ++E  +  DT
Sbjct:   341 ANLDGLNTVENFVYGDT 357

 Score = 42 (19.8 bits), Expect = 5.4e-37, Sum P(2) = 5.4e-37
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query:    32 SEQE-LTAKLKALFGFDSFKCELQKKAIRHIL 62
             S +E L A L   FGFD F+   Q++ I  +L
Sbjct:     8 SHKECLKASLLETFGFDGFRPG-QEQTITQLL 38


>TIGR_CMR|SPO_0107 [details] [associations]
            symbol:SPO_0107 "ATP-dependent DNA helicase RecQ"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
            recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            GO:GO:0009432 HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389
            OMA:YCLSRAK RefSeq:YP_165381.1 ProteinModelPortal:Q5LWQ8
            GeneID:3194995 KEGG:sil:SPO0107 PATRIC:23373451
            ProtClustDB:CLSK933158 Uniprot:Q5LWQ8
        Length = 679

 Score = 382 (139.5 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 104/290 (35%), Positives = 153/290 (52%)

Query:   107 RNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIK 166
             R G ++ ++S      RD   S+     +   L    SG T  E +A+ + L     R+K
Sbjct:    55 REG-VTVVISPLIALMRDQVRSLQEAGVEAGAL---TSGNTPEETEAVWQALEA--GRLK 108

Query:   167 LLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTG 226
             LLY+ PER  + +   +L+ +     ++ I VDEAHCVS+WGHDFRP Y R+GELR+  G
Sbjct:   109 LLYMAPERLASGAAMGMLRRI----GVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALG 164

Query:   227 NSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDS-YAHV 285
               +P+ A TATA+   + +I++ L   +  + F     R N+   + F    KDS    +
Sbjct:   165 --VPLAAFTATADAETQAEIVAKLFDGEEPRSFLRGFDRPNIH--LAF--AAKDSPRRQI 218

Query:   286 KEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----------VNKHERSRVQES 335
              +F     G+       GI+YC TR  T  LA ALR            +   +R  V+  
Sbjct:   219 LDFAGARRGQS------GIVYCGTRAKTETLAQALREDGHSACHYHGGMEAEDRRIVETR 272

Query:   336 FMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 385
             F R +  ++ AT++FGMGID+ ++R+V H  +P SI AYYQE GRAGRDG
Sbjct:   273 FAREDGLIVVATVAFGMGIDKPDIRWVAHADLPKSIEAYYQEIGRAGRDG 322

 Score = 42 (19.8 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query:    40 LKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             L+ +FGFD+F+   ++  I   +    ++   MPT
Sbjct:     8 LRDVFGFDAFRPGQEE--IAQAVAEGENVLAIMPT 40


>ASPGD|ASPL0000072255 [details] [associations]
            symbol:recQ species:162425 "Emericella nidulans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
            HOGENOM:HOG000044388 ProteinModelPortal:C8V8Q7
            EnsemblFungi:CADANIAT00006022 OMA:ARPNIHY Uniprot:C8V8Q7
        Length = 541

 Score = 288 (106.4 bits), Expect = 6.7e-36, Sum P(2) = 6.7e-36
 Identities = 61/134 (45%), Positives = 82/134 (61%)

Query:   150 ENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH 209
             E + ILE+L    PRI+LLYVTPE     +F   LQ + +  +L  I +DEAHC+SEWGH
Sbjct:    83 ERRVILEDLLSGHPRIRLLYVTPELCQNNTFRRNLQTMHKQRELVRIAIDEAHCISEWGH 142

Query:   210 DFRPTYRRLGELRQ-FTGNSIPIIALTATAEPSVKQDIISVLKFN-KPYKVFKTSTFRSN 267
             DFRP Y+ L   R   T   +PI ALTATA   V+ DII++L  N +  K+F T + R N
Sbjct:   143 DFRPAYKALSWFRHSLTNPPVPISALTATATSQVRTDIINILGLNPRRLKIFSTPSARPN 202

Query:   268 LFYDVIF-DDLLKD 280
             + Y++ F  +L  D
Sbjct:   203 IHYEIRFMQELAPD 216

 Score = 157 (60.3 bits), Expect = 6.7e-36, Sum P(2) = 6.7e-36
 Identities = 30/67 (44%), Positives = 42/67 (62%)

Query:   343 VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSL 402
             +I AT +FGMGID   VRFVVHW  P +   + QESGRAGRDG  +   +Y+S   ++ +
Sbjct:   322 IIVATTAFGMGIDNPEVRFVVHWSPPRTFEGFVQESGRAGRDGRAAASIVYYSLQERERV 381

Query:   403 EYVIKTD 409
                ++ D
Sbjct:   382 LNHLRRD 388

 Score = 37 (18.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query:    96 ADFILNGNVRSRNGWISP 113
             A  +    VR +N WI+P
Sbjct:   287 AGLVAADRVRVQNEWIAP 304


>RGD|1311071 [details] [associations]
            symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
            species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
            renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0015630 "microtubule cytoskeleton"
            evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
            PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
            EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
            UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
            STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
            KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
            Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
        Length = 621

 Score = 387 (141.3 bits), Expect = 2.1e-35, P = 2.1e-35
 Identities = 98/268 (36%), Positives = 146/268 (54%)

Query:   141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVD 199
             ++ S  +K   K +  E+      +KL+YVTPE+ A ++ F   L+      +L  + VD
Sbjct:   160 MLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVD 219

Query:   200 EAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258
             E HC S+WGHDFRP Y+ LG L RQF   +I +I LTATA   V +D   +L   K    
Sbjct:   220 EVHCCSQWGHDFRPDYKALGILKRQFP--NISLIGLTATATNHVLKDAQKILCVEKCL-T 276

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKA--NNCGIIYCRTREHTTDL 316
             F  S  R NL+Y+V      K S A  ++FIE      N       GIIYC +++ +  +
Sbjct:   277 FTASFNRPNLYYEV----RQKPSSA--EDFIENIANLINGRYKGKSGIIYCFSQKDSEQV 330

Query:   317 ADALRR----------KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWG 366
               +L++           +   +R++V   +   E+ V+ AT++FGMGID+ +VRFV+H  
Sbjct:   331 TISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHS 390

Query:   367 MPSSIPAYYQESGRAGRDGLQSYCRIYH 394
             M  S+  YYQESGRAGRD  ++ C +Y+
Sbjct:   391 MSKSMENYYQESGRAGRDDWRADCILYY 418


>UNIPROTKB|Q6AYJ1 [details] [associations]
            symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
            "Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
            repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
            EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
            UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
            STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
            KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
            Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
        Length = 621

 Score = 387 (141.3 bits), Expect = 2.1e-35, P = 2.1e-35
 Identities = 98/268 (36%), Positives = 146/268 (54%)

Query:   141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVD 199
             ++ S  +K   K +  E+      +KL+YVTPE+ A ++ F   L+      +L  + VD
Sbjct:   160 MLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVD 219

Query:   200 EAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258
             E HC S+WGHDFRP Y+ LG L RQF   +I +I LTATA   V +D   +L   K    
Sbjct:   220 EVHCCSQWGHDFRPDYKALGILKRQFP--NISLIGLTATATNHVLKDAQKILCVEKCL-T 276

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKA--NNCGIIYCRTREHTTDL 316
             F  S  R NL+Y+V      K S A  ++FIE      N       GIIYC +++ +  +
Sbjct:   277 FTASFNRPNLYYEV----RQKPSSA--EDFIENIANLINGRYKGKSGIIYCFSQKDSEQV 330

Query:   317 ADALRR----------KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWG 366
               +L++           +   +R++V   +   E+ V+ AT++FGMGID+ +VRFV+H  
Sbjct:   331 TISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHS 390

Query:   367 MPSSIPAYYQESGRAGRDGLQSYCRIYH 394
             M  S+  YYQESGRAGRD  ++ C +Y+
Sbjct:   391 MSKSMENYYQESGRAGRDDWRADCILYY 418


>UNIPROTKB|A0JN36 [details] [associations]
            symbol:RECQL "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
            activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
            HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
            EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
            RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
            Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
            InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
        Length = 649

 Score = 385 (140.6 bits), Expect = 4.5e-35, P = 4.5e-35
 Identities = 95/269 (35%), Positives = 149/269 (55%)

Query:   141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVD 199
             ++ +   K   K +  E+     ++KL+YVTPE+ A ++ F   L+      +   I VD
Sbjct:   160 MLNASSPKEHVKWVHAEMVNKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVD 219

Query:   200 EAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258
             E HC S+WGHDFRP Y+ LG L RQF   S+  I LTATA   V +D   +L   K +  
Sbjct:   220 EVHCCSQWGHDFRPDYKALGILKRQFPNASL--IGLTATATSHVLKDAQKILCVEKCF-T 276

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIE---KCLGKDNKANNCGIIYCRTREHTTD 315
             F  S  R NL+Y+V      +   ++ ++FIE   K +    K  + GIIYC +++ +  
Sbjct:   277 FTASFNRPNLYYEV------RQKPSNTEDFIEDIVKLINGRYKGQS-GIIYCFSQKDSEQ 329

Query:   316 LADALRR----------KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHW 365
             +  +L++           +   ++++V   +   EI V+ AT++FGMGID+ +VRFV+H 
Sbjct:   330 VTISLQKLGIPAGAYHANMEPEDKTKVHRRWAANEIQVVVATVAFGMGIDKPDVRFVIHH 389

Query:   366 GMPSSIPAYYQESGRAGRDGLQSYCRIYH 394
              M  S+  YYQESGRAGRD +++ C +Y+
Sbjct:   390 SMSKSMENYYQESGRAGRDDMKADCILYY 418


>UNIPROTKB|F1SR01 [details] [associations]
            symbol:RECQL "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
            renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
            OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
            Uniprot:F1SR01
        Length = 649

 Score = 383 (139.9 bits), Expect = 7.4e-35, P = 7.4e-35
 Identities = 97/269 (36%), Positives = 146/269 (54%)

Query:   141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVD 199
             ++ +  +K   K +  E+     ++KL+YVTPE+ A ++ F   L+      +   I +D
Sbjct:   160 MLNASSSKEHVKWVHAEMVNKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAID 219

Query:   200 EAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258
             E HC S+WGHDFRP Y+ LG L RQF   S+  I LTATA   V +D   +L   K +  
Sbjct:   220 EVHCCSQWGHDFRPDYKALGILKRQFPNTSL--IGLTATATSHVLKDAQKILCVEKCF-T 276

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIE---KCLGKDNKANNCGIIYCRTREH--- 312
             F  S  R NL+Y+V      +   ++ ++FIE   K +    K  + GIIYC +++    
Sbjct:   277 FTASFNRPNLYYEV------RQKPSNTEDFIEDIVKLINGRYKGQS-GIIYCFSQKDSEQ 329

Query:   313 -TTDL------ADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHW 365
              T  L      A A    +   +++ V   +   EI V+ AT++FGMGID+ +VRFV+H 
Sbjct:   330 VTVSLQKLGIHAGAYHANMEPEDKTTVHRRWSANEIQVVVATVAFGMGIDKPDVRFVIHH 389

Query:   366 GMPSSIPAYYQESGRAGRDGLQSYCRIYH 394
              M  S+  YYQESGRAGRD  ++ C +Y+
Sbjct:   390 SMSKSMENYYQESGRAGRDDTKADCILYY 418


>UNIPROTKB|F1PNP1 [details] [associations]
            symbol:RECQL "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
            RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
            KEGG:cfa:486641 Uniprot:F1PNP1
        Length = 646

 Score = 382 (139.5 bits), Expect = 9.4e-35, P = 9.4e-35
 Identities = 98/267 (36%), Positives = 144/267 (53%)

Query:   141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVD 199
             ++ +  +K   K +  E+     ++KL+YVTPE+ A ++ F   L+      +   I VD
Sbjct:   160 MLNASSSKEHVKWVHAEMINKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVD 219

Query:   200 EAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258
             E HC S WGHDFRP Y+ LG L RQF   ++  + LTATA   V +D   +L   K +  
Sbjct:   220 EVHCCSHWGHDFRPDYKALGILKRQFPNTAL--MGLTATATSHVLKDAQKILCVGKCF-T 276

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAH-VKEFIEKCLGKDNKANNCGIIYCRTREH----T 313
             F  S  R NL+Y++      K S    V E I K +    K  + GIIYC +++     T
Sbjct:   277 FTASFNRPNLYYEI----RQKPSNTEDVIEDIVKLINGRYKGQS-GIIYCFSQKDSEQVT 331

Query:   314 TDL------ADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGM 367
               L      A A    +   +++RV   +   EI V+ AT++FGMGID+ +VRF++H  M
Sbjct:   332 VSLQKLGIQAGAYHANMEPEDKTRVHRRWSANEIQVVVATVAFGMGIDKPDVRFIIHHSM 391

Query:   368 PSSIPAYYQESGRAGRDGLQSYCRIYH 394
               SI  YYQESGRAGRD +++ C +Y+
Sbjct:   392 SKSIENYYQESGRAGRDDMKADCILYY 418


>UNIPROTKB|P46063 [details] [associations]
            symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
            "Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000733 "DNA strand
            renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
            evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
            EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
            EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
            EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
            IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
            UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
            ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
            STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
            PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
            Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
            CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
            HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
            PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
            PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
            EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
            ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
            Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
        Length = 649

 Score = 382 (139.5 bits), Expect = 9.6e-35, P = 9.6e-35
 Identities = 98/269 (36%), Positives = 145/269 (53%)

Query:   141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVD 199
             ++ +  +K   K +  E+      +KL+YVTPE+ A ++ F   L+      +   I VD
Sbjct:   160 MLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVD 219

Query:   200 EAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258
             E HC S+WGHDFRP Y+ LG L RQF   S+  I LTATA   V  D   +L   K +  
Sbjct:   220 EVHCCSQWGHDFRPDYKALGILKRQFPNASL--IGLTATATNHVLTDAQKILCIEKCF-T 276

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIE---KCLGKDNKANNCGIIYCRTREH--- 312
             F  S  R NL+Y+V      +   ++ ++FIE   K +    K  + GIIYC +++    
Sbjct:   277 FTASFNRPNLYYEV------RQKPSNTEDFIEDIVKLINGRYKGQS-GIIYCFSQKDSEQ 329

Query:   313 -TTDL------ADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHW 365
              T  L      A A    +   +++ V   +   EI V+ AT++FGMGID+ +VRFV+H 
Sbjct:   330 VTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHH 389

Query:   366 GMPSSIPAYYQESGRAGRDGLQSYCRIYH 394
              M  S+  YYQESGRAGRD +++ C +Y+
Sbjct:   390 SMSKSMENYYQESGRAGRDDMKADCILYY 418


>UNIPROTKB|Q8EEK1 [details] [associations]
            symbol:SO_2380 "ATP-dependent DNA helicase RecQ family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0003674
            "molecular_function" evidence=ND] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
            GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
            OMA:GHNFRPD ProtClustDB:CLSK906704 RefSeq:NP_717970.1
            ProteinModelPortal:Q8EEK1 GeneID:1170099 KEGG:son:SO_2380
            PATRIC:23524381 Uniprot:Q8EEK1
        Length = 654

 Score = 380 (138.8 bits), Expect = 1.6e-34, P = 1.6e-34
 Identities = 100/283 (35%), Positives = 156/283 (55%)

Query:   142 IVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEA 201
             I S  T  + + ++ E R    ++KLL V+ ER   E F   +Q +     L+ +VVDEA
Sbjct:    96 IDSTLTPEQTQQVMREAR--SGQLKLLMVSVERFKNERFRQFIQSI----PLSMLVVDEA 149

Query:   202 HCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIAL-TATAEPSVKQDIISVLKFN-KPYKV 258
             HC+SEWGH+FRP Y +L +  R+    SIP++ L TATA   VKQD+   ++F+ KP  +
Sbjct:   150 HCISEWGHNFRPDYLKLPDYCREL---SIPLVLLLTATATRKVKQDM--AIRFDIKPQHI 204

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTD--- 315
              +T  +RSNL   V+   +  ++   +   +++ L      +  GI+Y  T +HT +   
Sbjct:   205 VQTGFYRSNLDLTVL--PVASENKLRI---LKQQL---QSFDGAGIVYV-TLQHTAEEVA 255

Query:   316 --------LADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGM 367
                     +A A     +  +R ++Q  FM G+  ++ ATI+FGMGID+ N+RFV+H+ +
Sbjct:   256 SQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKSNIRFVIHYDL 315

Query:   368 PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDT 410
             P SI  Y QE GRAGRDG  S+C    +     ++E  +  DT
Sbjct:   316 PKSIENYCQEIGRAGRDGQLSHCVTLANLDGINTVENFVYGDT 358


>TIGR_CMR|SO_2380 [details] [associations]
            symbol:SO_2380 "RecQ domain protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0006310 "DNA recombination" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
            HSSP:P15043 HOGENOM:HOG000044388 KO:K03654 OMA:GHNFRPD
            ProtClustDB:CLSK906704 RefSeq:NP_717970.1 ProteinModelPortal:Q8EEK1
            GeneID:1170099 KEGG:son:SO_2380 PATRIC:23524381 Uniprot:Q8EEK1
        Length = 654

 Score = 380 (138.8 bits), Expect = 1.6e-34, P = 1.6e-34
 Identities = 100/283 (35%), Positives = 156/283 (55%)

Query:   142 IVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEA 201
             I S  T  + + ++ E R    ++KLL V+ ER   E F   +Q +     L+ +VVDEA
Sbjct:    96 IDSTLTPEQTQQVMREAR--SGQLKLLMVSVERFKNERFRQFIQSI----PLSMLVVDEA 149

Query:   202 HCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIAL-TATAEPSVKQDIISVLKFN-KPYKV 258
             HC+SEWGH+FRP Y +L +  R+    SIP++ L TATA   VKQD+   ++F+ KP  +
Sbjct:   150 HCISEWGHNFRPDYLKLPDYCREL---SIPLVLLLTATATRKVKQDM--AIRFDIKPQHI 204

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTD--- 315
              +T  +RSNL   V+   +  ++   +   +++ L      +  GI+Y  T +HT +   
Sbjct:   205 VQTGFYRSNLDLTVL--PVASENKLRI---LKQQL---QSFDGAGIVYV-TLQHTAEEVA 255

Query:   316 --------LADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGM 367
                     +A A     +  +R ++Q  FM G+  ++ ATI+FGMGID+ N+RFV+H+ +
Sbjct:   256 SQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKSNIRFVIHYDL 315

Query:   368 PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDT 410
             P SI  Y QE GRAGRDG  S+C    +     ++E  +  DT
Sbjct:   316 PKSIENYCQEIGRAGRDGQLSHCVTLANLDGINTVENFVYGDT 358


>UNIPROTKB|F1NPI7 [details] [associations]
            symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
            evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
            cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
            GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
            Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
        Length = 661

 Score = 378 (138.1 bits), Expect = 2.9e-34, P = 2.9e-34
 Identities = 93/266 (34%), Positives = 150/266 (56%)

Query:   141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVD 199
             L+ +  +K   K +  ++     ++KLLYVTPE+ A ++ F   L+   +   LA I VD
Sbjct:   160 LLNASSSKEHVKWVHAQMLDRNSQLKLLYVTPEKIAKSKMFMSKLEKAYQAGCLARIAVD 219

Query:   200 EAHCVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV 258
             E HC S+WGHDFRP Y+ LG L RQF     P+I LTATA   V +D  ++L   K    
Sbjct:   220 EVHCCSQWGHDFRPDYKSLGILKRQFP--CAPLIGLTATATNHVLKDAQNILHIQKCI-T 276

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLAD 318
             F  S  R NL+Y+V       + +  +++ ++   G+    +  GI+YC +++ +  +  
Sbjct:   277 FTASFNRPNLYYEVRHKPSNNEDF--IEDIVKLINGRYKGLS--GIVYCFSQKDSEQVTV 332

Query:   319 ALRR---KVNKHE-------RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMP 368
             +L++   K   +        +++V + +   +I V+ AT++FGMGID+ +VRFV+H  M 
Sbjct:   333 SLQKLGIKAGTYHANMDAKYKTKVHKGWAANQIQVVVATVAFGMGIDKPDVRFVIHHSMS 392

Query:   369 SSIPAYYQESGRAGRDGLQSYCRIYH 394
              S+  YYQESGRAGRD  ++ C +Y+
Sbjct:   393 KSMENYYQESGRAGRDDQKADCILYY 418


>ZFIN|ZDB-GENE-050809-134 [details] [associations]
            symbol:recql "RecQ protein-like (DNA helicase
            Q1-like)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-050809-134 GO:GO:0005524 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            EMBL:BX914215 IPI:IPI00933301 Ensembl:ENSDART00000101198
            Uniprot:F1Q4T3
        Length = 640

 Score = 374 (136.7 bits), Expect = 6.9e-34, P = 6.9e-34
 Identities = 98/263 (37%), Positives = 145/263 (55%)

Query:   144 SGQTKTENKAILEELRLVKPRIKLLYVTPER-AVTESFHYLLQHLVRYNKLAYIVVDEAH 202
             +  +K ++K IL  +       KLLYVTPE+ A ++     L+       LA I VDE H
Sbjct:   169 ASSSKEDSKRILAGMTDKNSPFKLLYVTPEKIAKSKLLMSKLEKAFNMGLLARIAVDEVH 228

Query:   203 CVSEWGHDFRPTYRRLGEL-RQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT 261
             C S+WGHDFRP Y+ LG L RQF   ++P+I LTATA  +V +D   +L   +P  V  T
Sbjct:   229 CCSQWGHDFRPDYKLLGILKRQFP--NVPLIGLTATATSNVLKDCQKILCVQEP--VTLT 284

Query:   262 STF-RSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADAL 320
             + F R NL+Y+V F D  +D    +   I    G+    N  GI+Y  +++    +A  L
Sbjct:   285 APFNRPNLYYEVRFKDN-EDCTDQIASLIR---GRYK--NQSGIVYVFSQKDAEVVATEL 338

Query:   321 RRK----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSS 370
             +++          +    +S V + +   +I V+ AT++FGMGID+ +VRFV+H  +  S
Sbjct:   339 QKRDIVAQPYHANMEPSHKSLVHQRWSSKKIQVVVATVAFGMGIDKADVRFVIHHTISKS 398

Query:   371 IPAYYQESGRAGRDGLQSYCRIY 393
             I  YYQESGRAGRD   + C ++
Sbjct:   399 IENYYQESGRAGRDDSPADCIVF 421


>TAIR|locus:2029799 [details] [associations]
            symbol:AT1G27880 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA;ISS] [GO:0042631 "cellular response
            to water deprivation" evidence=IEP] [GO:0006260 "DNA replication"
            evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
            [GO:0008283 "cell proliferation" evidence=RCA] [GO:0051567 "histone
            H3-K9 methylation" evidence=RCA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
            GO:GO:0005634 GO:GO:0003676 EMBL:AC079280 GO:GO:0006310
            GO:GO:0042631 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043
            HOGENOM:HOG000264957 KO:K10730 EMBL:AJ421618 EMBL:AK226619
            IPI:IPI00519923 RefSeq:NP_174109.2 UniGene:At.40984
            ProteinModelPortal:Q0WVW7 SMR:Q0WVW7 PaxDb:Q0WVW7 PRIDE:Q0WVW7
            EnsemblPlants:AT1G27880.1 GeneID:839681 KEGG:ath:AT1G27880
            KEGG:dosa:Os04t0486800-01 TAIR:At1g27880 InParanoid:Q0WVW7
            OMA:THFWGRY PhylomeDB:Q0WVW7 ProtClustDB:CLSN2680265
            Genevestigator:Q0WVW7 Uniprot:Q0WVW7
        Length = 911

 Score = 339 (124.4 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
 Identities = 92/280 (32%), Positives = 144/280 (51%)

Query:   141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDE 200
             L+ S Q   E    L +L+  +  IK+L+V+PER +   F  + +  +    ++ +VVDE
Sbjct:   337 LLSSSQRPEEATETLRKLK--EGIIKVLFVSPERLLNVEFLSMFRMSL---SVSLVVVDE 391

Query:   201 AHCVSEWGHDFRPTYRRLGELRQFTGNSIP-IIALTATAEPSVKQDIISVLKFNKPYKVF 259
             AHCVSEW H+FRP+Y RL     F+      I+A+TATA     Q ++S L+      + 
Sbjct:   392 AHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTMTLQAVMSSLEIPSTNLIQ 451

Query:   260 KTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADA 319
             K S  R N    V      +     +K+ +        K     I+YC+ +  T  ++  
Sbjct:   452 K-SQLRDNFELSVSLSGANR-----MKDLLILMESPPYKEIRSIIVYCKFQYETDMISKY 505

Query:   320 LR-RKVNK---H------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS 369
             LR   +N    H      +R R+QESF   +I V+ AT++FGMG+D+ +V  V+H+ +P 
Sbjct:   506 LRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPG 565

Query:   370 SIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTD 409
             S+  Y QE GRAGRDG  SYC +++   +   L  +  +D
Sbjct:   566 SMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSLAHSD 605

 Score = 61 (26.5 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
 Identities = 16/45 (35%), Positives = 29/45 (64%)

Query:    30 KVSEQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPT 74
             + S++ LT  L  ++G+DSF+ + Q +AI+ IL  +  + V +PT
Sbjct:   251 EASDENLTKLLNLVYGYDSFR-DGQLQAIKMILGGSSTMLV-LPT 293


>RGD|1564788 [details] [associations]
            symbol:Wrn "Werner syndrome, RecQ helicase-like" species:10116
            "Rattus norvegicus" [GO:0000287 "magnesium ion binding"
            evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
            [GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
            "telomere maintenance" evidence=ISO] [GO:0000731 "DNA synthesis
            involved in DNA repair" evidence=ISO] [GO:0001302 "replicative cell
            aging" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
            "DNA helicase activity" evidence=ISO] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=ISO] [GO:0004386 "helicase
            activity" evidence=ISO] [GO:0004527 "exonuclease activity"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0006200
            "ATP catabolic process" evidence=ISO] [GO:0006259 "DNA metabolic
            process" evidence=ISO] [GO:0006260 "DNA replication"
            evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006284 "base-excision repair" evidence=ISO] [GO:0006302
            "double-strand break repair" evidence=ISO] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO] [GO:0006979 "response to oxidative stress"
            evidence=ISO] [GO:0007569 "cell aging" evidence=ISO] [GO:0008408
            "3'-5' exonuclease activity" evidence=IEA;ISO] [GO:0009267
            "cellular response to starvation" evidence=ISO] [GO:0009378
            "four-way junction helicase activity" evidence=ISO] [GO:0010225
            "response to UV-C" evidence=ISO] [GO:0010259 "multicellular
            organismal aging" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0030145 "manganese ion binding" evidence=ISO]
            [GO:0031297 "replication fork processing" evidence=ISO] [GO:0032066
            "nucleolus to nucleoplasm transport" evidence=ISO] [GO:0032403
            "protein complex binding" evidence=ISO] [GO:0032508 "DNA duplex
            unwinding" evidence=ISO] [GO:0040009 "regulation of growth rate"
            evidence=ISO] [GO:0042803 "protein homodimerization activity"
            evidence=ISO] [GO:0042981 "regulation of apoptotic process"
            evidence=ISO] [GO:0043138 "3'-5' DNA helicase activity"
            evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0051345 "positive regulation of
            hydrolase activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA
            binding" evidence=ISO] [GO:0071480 "cellular response to gamma
            radiation" evidence=ISO] [GO:0032389 "MutLalpha complex"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
            SMART:SM00490 SMART:SM00956 RGD:1564788 GO:GO:0005524 GO:GO:0005813
            GO:GO:0005654 GO:GO:0006979 GO:GO:0005730 GO:GO:0042981
            GO:GO:0000287 GO:GO:0006284 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0001302 GO:GO:0030145 GO:GO:0006310 GO:GO:0009267
            SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345
            GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
            GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
            GO:GO:0032066 IPI:IPI00960063 ProteinModelPortal:F1LTH9
            Ensembl:ENSRNOT00000058805 Uniprot:F1LTH9
        Length = 1448

 Score = 360 (131.8 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 85/213 (39%), Positives = 124/213 (58%)

Query:   193 LAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKF 252
             +  I VDEAHC+SEWGHDFR ++R LG L+      +P+IAL+ATA  S+++DII  L  
Sbjct:   674 ITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALP-LVPVIALSATASSSIREDIIRCLNL 732

Query:   253 NKPYKVFKTSTFRSNLFYDVI--FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTR 310
               P+ +  T   R NL+ +V     ++L+D    +K F+ +      +     IIYC +R
Sbjct:   733 KDPH-ITCTGFDRPNLYLEVERKTGNILQD----LKPFLVRKTSSAWEFEGPTIIYCPSR 787

Query:   311 EHTTDLADALRRKVNK-----H------ERSRVQESFMRGEINVITATISFGMGIDRQNV 359
             + T  +   L  K+N      H      ER  +   F+R EI  + ATI+FGMGI++ ++
Sbjct:   788 KVTEQVTVELG-KLNVACQAYHAGMKISERKDIHHRFLRDEIQCVVATIAFGMGINKADI 846

Query:   360 RFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI 392
             R V+H+G P  + +YYQE GRAGRDGLQS C +
Sbjct:   847 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHL 879


>TAIR|locus:2180255 [details] [associations]
            symbol:RECQSIM "RECQ helicase SIM" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0006281 "DNA repair" evidence=IDA] [GO:0043138 "3'-5' DNA
            helicase activity" evidence=IDA] [GO:0006270 "DNA replication
            initiation" evidence=RCA] [GO:0006275 "regulation of DNA
            replication" evidence=RCA] [GO:0051726 "regulation of cell cycle"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR009060 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:AC007478
            InterPro:IPR015940 PROSITE:PS50030 GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 eggNOG:COG0514
            TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0043138 EMBL:AC069556
            HSSP:P15043 EMBL:AJ404475 EMBL:AY059754 EMBL:AY133823
            IPI:IPI00537732 RefSeq:NP_568499.1 UniGene:At.10179
            ProteinModelPortal:Q9FT69 SMR:Q9FT69 IntAct:Q9FT69
            EnsemblPlants:AT5G27680.1 GeneID:832830 KEGG:ath:AT5G27680
            TAIR:At5g27680 HOGENOM:HOG000084012 InParanoid:Q9FT69 KO:K10900
            OMA:CRAKILV PhylomeDB:Q9FT69 ProtClustDB:CLSN2689878
            Genevestigator:Q9FT69 Uniprot:Q9FT69
        Length = 858

 Score = 229 (85.7 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
 Identities = 65/185 (35%), Positives = 94/185 (50%)

Query:   155 LEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPT 214
             +EE + ++   +++YV PE  V       LQ L + + +A   +DEAHCVS+WGHDFRP 
Sbjct:   247 IEE-KAMQGMYQIIYVCPETVVR--LIKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPH 303

Query:   215 YRRLGELRQ--------FTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRS 266
             YR+L  LR+        F    +PI+ALTATA  +V++DI+  L  +K  K+  TS FR 
Sbjct:   304 YRKLSVLRENFCASNLEFLEYDVPIMALTATATVNVQEDILESLHLSKETKIVLTSFFRP 363

Query:   267 NLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCG---IIYCRTREHTTDLADALRRK 323
             NL + V      K + ++ K+F         K N+ G    +  R  E  TD        
Sbjct:   364 NLQFSVKHSRT-KFASSYAKDFQNLVDLYSEKKNSTGKKLAVISRESEEQTDFGS--HDS 420

Query:   324 VNKHE 328
              N HE
Sbjct:   421 ENIHE 425

 Score = 186 (70.5 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
 Identities = 35/68 (51%), Positives = 50/68 (73%)

Query:   326 KHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 385
             KH R +V + F   ++ V+ ATI+FGMGID++NVR ++H+G   S+ AYYQE+GRAGRDG
Sbjct:   534 KHLR-QVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDG 592

Query:   386 LQSYCRIY 393
               + C +Y
Sbjct:   593 ELAECVLY 600


>ZFIN|ZDB-GENE-070702-2 [details] [associations]
            symbol:wrn "Werner syndrome" species:7955 "Danio
            rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0044237
            "cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
            activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
            metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
            SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
            ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
        Length = 1436

 Score = 251 (93.4 bits), Expect = 7.0e-30, Sum P(2) = 7.0e-30
 Identities = 73/211 (34%), Positives = 113/211 (53%)

Query:   145 GQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204
             G  +T+N   L E ++ +   +++Y+TPE   + +   L+Q L R   L+ I VDEAHC+
Sbjct:   515 GSAQTKN---LNE-QVKRGDFRVVYMTPEFC-SGNIPLLVQ-LDRTVGLSLIAVDEAHCI 568

Query:   205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTF 264
             S+WGHDFR  YR LG+L++    ++P +ALTATA PS++ DII  L    P  +  TS  
Sbjct:   569 SQWGHDFRSAYRELGKLKKNLP-TVPFLALTATASPSIRDDIIKSLHLINPM-ITCTSFD 626

Query:   265 RSNLFYDVI--FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR 322
             R NL+ DV     D+++D    +K F+ K  G   +     I+YC +++    +  AL +
Sbjct:   627 RPNLYLDVNRKSGDVIQD----LKRFLVKKKGGGYEFEGSAIVYCPSKKEAERVTTALFK 682

Query:   323 K----------VNKHERSRVQESFMRGEINV 343
                        ++  +R   Q  FMR EI V
Sbjct:   683 LDIPCGVYHAGLSIKQRRETQHQFMRDEIQV 713

 Score = 160 (61.4 bits), Expect = 7.0e-30, Sum P(2) = 7.0e-30
 Identities = 32/98 (32%), Positives = 55/98 (56%)

Query:   344 ITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLE 403
             + AT++FGMGI++ ++R V+H+G P  + +YYQE GRAGRDGL S C +          +
Sbjct:   770 VVATVAFGMGINKSDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSACHVLWMPGDMALNK 829

Query:   404 YVIKTDTSTKREQLEL----KFKNYLSMLEYCEQGYFL 437
             +++    S +    ++    K + YL+  + C +   L
Sbjct:   830 FILNQSKSERFRSYKIDMMAKMEKYLNSTK-CRRKLIL 866


>TIGR_CMR|BA_1505 [details] [associations]
            symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
            species:198094 "Bacillus anthracis str. Ames" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
            GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
            OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
            RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
            EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
            EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
            GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
            ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
            BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
        Length = 509

 Score = 330 (121.2 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 94/299 (31%), Positives = 150/299 (50%)

Query:   138 QLELIVSGQTKTENK-AILEELRLVKPRI---KLLYVTPERAVTESFHYLLQHLVRYNKL 193
             QL+ +V  +    N    L E R    ++   K ++V+PE   +E    L++ L + + +
Sbjct:    74 QLKYVVKDRVIAFNSFRTLNEKREAMKKLSSYKFIFVSPEMLQSE---LLIRELKKIH-I 129

Query:   194 AYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFN 253
             +  VVDEAHC+S+WG+DFRP Y++L  + +  G S  ++ALTATA   V QDI   L   
Sbjct:   130 SLFVVDEAHCISQWGYDFRPDYKKLNVVIENIG-SPTVLALTATATKGVLQDIADSLNL- 187

Query:   254 KPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHT 313
             K       S  R N+  DV F + +++    + E +    G        GI+YC +R  T
Sbjct:   188 KGAAEHVYSIDRPNIAMDVQFVETIEEKKEALLEQVMYLQGP-------GIVYCSSRAWT 240

Query:   314 TDLADALRRK-----------VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFV 362
               L + LR K           +   ER  +Q+ FM  ++ ++  T +FGMG+++ N R++
Sbjct:   241 ERLTEYLRGKGVTGVAFYHGGMEHEERMLIQQQFMNNQLQLVICTSAFGMGVNKANTRYI 300

Query:   363 VHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKF 421
             +H+  P++I +Y QE GRAGRDG  S   +  S      L   I  D    + Q++  F
Sbjct:   301 IHFHYPTNIASYLQEIGRAGRDGEPSIAILLCSPLDH-DLPISIIEDELPSKSQIQFLF 358


>UNIPROTKB|O94761 [details] [associations]
            symbol:RECQL4 "ATP-dependent DNA helicase Q4" species:9606
            "Homo sapiens" [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032508
            "DNA duplex unwinding" evidence=IDA] [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=IMP] [GO:0000733 "DNA strand
            renaturation" evidence=IDA] [GO:0000405 "bubble DNA binding"
            evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0006260
            "DNA replication" evidence=IDA] [GO:0006281 "DNA repair"
            evidence=TAS] [GO:0007275 "multicellular organismal development"
            evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000405
            EMBL:AB006532 EMBL:AB026546 EMBL:DQ176868 EMBL:BC011602
            EMBL:BC013277 IPI:IPI00014925 RefSeq:NP_004251.3 UniGene:Hs.31442
            PDB:2KMU PDBsum:2KMU ProteinModelPortal:O94761 SMR:O94761
            DIP:DIP-48475N IntAct:O94761 MINT:MINT-1432307 STRING:O94761
            PhosphoSite:O94761 PaxDb:O94761 PRIDE:O94761 GeneID:9401
            KEGG:hsa:9401 UCSC:uc003zdj.3 CTD:9401 GeneCards:GC08M145738
            HGNC:HGNC:9949 MIM:218600 MIM:266280 MIM:268400 MIM:603780
            neXtProt:NX_O94761 Orphanet:1225 Orphanet:3021 Orphanet:221016
            PharmGKB:PA34316 HOGENOM:HOG000264957 HOVERGEN:HBG065925
            InParanoid:O94761 KO:K10730 EvolutionaryTrace:O94761
            GenomeRNAi:9401 NextBio:35219 CleanEx:HS_RECQL4
            Genevestigator:O94761 GermOnline:ENSG00000160957 InterPro:IPR021110
            Pfam:PF11719 Uniprot:O94761
        Length = 1208

 Score = 202 (76.2 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
 Identities = 36/77 (46%), Positives = 54/77 (70%)

Query:   317 ADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQ 376
             A+A    +   ER RVQ +FM+G++ V+ AT++FGMG+DR +VR V+H G+P S  +Y Q
Sbjct:   741 AEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 800

Query:   377 ESGRAGRDGLQSYCRIY 393
               GRAGRDG  ++C ++
Sbjct:   801 AVGRAGRDGQPAHCHLF 817

 Score = 178 (67.7 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
 Identities = 61/212 (28%), Positives = 102/212 (48%)

Query:   111 ISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYV 170
             +SP+LS       DD+   V+G     +   I SG T+ + +++L+++R  +  + +L +
Sbjct:   530 VSPLLS-----LMDDQ---VSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQ--VHVLML 579

Query:   171 TPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE-LRQFTGNSI 229
             TPE  V       L    +   +A+  +DEAHC+S+W H+FRP Y R+ + LR+  G   
Sbjct:   580 TPEALVGAGG---LPPAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHC 636

Query:   230 PIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFI 289
               + LTATA      D+   L   +   +   +   +NL   V  D   +D+   +   +
Sbjct:   637 -FLGLTATATRRTASDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMD---RDTDQALLTLL 692

Query:   290 EKCLGKDNKANNCGIIYCRTREHTTDLADALR 321
             +   GK  +  +  IIYC  RE T  +A  LR
Sbjct:   693 Q---GKRFQNLDSIIIYCNRREDTERIAALLR 721


>RGD|1307732 [details] [associations]
            symbol:Recql4 "RecQ protein-like 4" species:10116 "Rattus
            norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
            [GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0001501
            "skeletal system development" evidence=ISO] [GO:0003674
            "molecular_function" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISO]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0006260 "DNA
            replication" evidence=ISO] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
            regulation of cell proliferation" evidence=IEA;ISO] [GO:0032508
            "DNA duplex unwinding" evidence=ISO] [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=ISO] [GO:0043473
            "pigmentation" evidence=IEA;ISO] [GO:0045875 "negative regulation
            of sister chromatid cohesion" evidence=IEA;ISO] [GO:0048705
            "skeletal system morphogenesis" evidence=IEA;ISO]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            RGD:1307732 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
            GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
            IPI:IPI00366433 Ensembl:ENSRNOT00000045135 UCSC:RGD:1307732
            ArrayExpress:D4A5W5 Uniprot:D4A5W5
        Length = 1216

 Score = 204 (76.9 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
 Identities = 36/78 (46%), Positives = 55/78 (70%)

Query:   316 LADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY 375
             LA+A    +   ER RVQ++FM+G + ++ AT++FGMG+DR +VR V+H G+P S  +Y 
Sbjct:   762 LAEAYHAGMCSQERKRVQQAFMQGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYV 821

Query:   376 QESGRAGRDGLQSYCRIY 393
             Q  GRAGRDG  ++C ++
Sbjct:   822 QAIGRAGRDGKPAHCHLF 839

 Score = 174 (66.3 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
 Identities = 60/214 (28%), Positives = 104/214 (48%)

Query:   111 ISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYV 170
             +SP+LS       DD+ S +       +   + SG TK + +++L+++R  +  + +L V
Sbjct:   547 VSPLLS-----LMDDQVSDLPS---CLKAACLHSGMTKKQRESVLKKVRAAQ--VHVLIV 596

Query:   171 TPERAVT--ESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE-LRQFTGN 227
             +PE  V         L    +   +A+  +DE HC+S+W H+FRP Y R+ + LR+  G 
Sbjct:   597 SPEALVGCGAKGPANLPPAAQLPPVAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGV 656

Query:   228 SIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKE 287
                 + LTATA  S  +D+   L   +  +V  +++  +NL   V  D   +DS   +  
Sbjct:   657 RC-FLGLTATATRSTARDVAQHLGIAEELEVSGSASIPANLHLSVSMD---RDSDQALVT 712

Query:   288 FIEKCLGKDNKANNCGIIYCRTREHTTDLADALR 321
              ++   G   +  +  IIYC  R+ T  +A  LR
Sbjct:   713 LLQ---GDRFRTLDSIIIYCARRKDTERVAALLR 743


>MGI|MGI:1931028 [details] [associations]
            symbol:Recql4 "RecQ protein-like 4" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000733 "DNA
            strand renaturation" evidence=ISO] [GO:0001501 "skeletal system
            development" evidence=IMP] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
            "DNA replication" evidence=ISO] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008284 "positive regulation of cell proliferation"
            evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
            [GO:0043473 "pigmentation" evidence=IMP] [GO:0045875 "negative
            regulation of sister chromatid cohesion" evidence=IMP] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0048705 "skeletal system
            morphogenesis" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50158 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 MGI:MGI:1931028 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008284
            GO:GO:0006260 GO:GO:0008270 GO:GO:0003676 GO:GO:0006310
            Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0048705 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043473 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            GO:GO:0045875 CTD:9401 HOGENOM:HOG000264957 HOVERGEN:HBG065925
            KO:K10730 InterPro:IPR021110 Pfam:PF11719 EMBL:AB039882
            EMBL:AB175741 EMBL:AB042529 IPI:IPI00119366 IPI:IPI00462416
            RefSeq:NP_478121.2 UniGene:Mm.18373 ProteinModelPortal:Q75NR7
            SMR:Q75NR7 IntAct:Q75NR7 STRING:Q75NR7 PhosphoSite:Q75NR7
            PRIDE:Q75NR7 DNASU:79456 Ensembl:ENSMUST00000036852 GeneID:79456
            KEGG:mmu:79456 UCSC:uc007wlv.1 OrthoDB:EOG4CJVGG NextBio:349927
            Bgee:Q75NR7 CleanEx:MM_RECQL4 Genevestigator:Q75NR7
            GermOnline:ENSMUSG00000033762 Uniprot:Q75NR7
        Length = 1216

 Score = 209 (78.6 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 36/78 (46%), Positives = 56/78 (71%)

Query:   316 LADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY 375
             +A+A    ++  ER RVQ++FMRG + ++ AT++FGMG+DR +VR V+H G+P S  +Y 
Sbjct:   762 IAEAYHAGMSSQERRRVQQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYV 821

Query:   376 QESGRAGRDGLQSYCRIY 393
             Q  GRAGRDG  ++C ++
Sbjct:   822 QAIGRAGRDGKPAHCHLF 839

 Score = 165 (63.1 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 57/204 (27%), Positives = 99/204 (48%)

Query:   111 ISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYV 170
             +SP+LS       DD+ S +       +   + SG TK + +++L+++R  +  + +L V
Sbjct:   547 VSPLLS-----LMDDQVSDLPS---CLKAACLHSGMTKKQRESVLKKVRAAQ--VHVLIV 596

Query:   171 TPERAVTESFHY--LLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE-LRQFTGN 227
             +PE  V         L    +   +A+  +DE HC+S+W H+FRP Y R+ + LR+  G 
Sbjct:   597 SPEALVGCGARGPGSLPQAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGV 656

Query:   228 SIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKE 287
                 + LTATA  S  +D+   L     +++  ++   +NL   V  D   +DS   +  
Sbjct:   657 RC-FLGLTATATRSTARDVAQHLGIAGEFELSGSANIPANLHLSVSMD---RDSDQALVT 712

Query:   288 FIEKCLGKDNKANNCGIIYCRTRE 311
              ++   G   +  +  IIYC TRE
Sbjct:   713 LLQ---GDRFRTLDSVIIYC-TRE 732


>UNIPROTKB|Q4JNX8 [details] [associations]
            symbol:RTS "RECQL4-helicase-like protein" species:8355
            "Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
            "chromatin binding" evidence=IDA] [GO:0006270 "DNA replication
            initiation" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0000785
            GO:GO:0003682 GO:GO:0003676 GO:GO:0006270 Gene3D:4.10.60.10
            SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110
            Pfam:PF11719 EMBL:DQ059311 RefSeq:NP_001089101.1 UniGene:Xl.86701
            ProteinModelPortal:Q4JNX8 GeneID:733317 KEGG:xla:733317 CTD:733317
            Uniprot:Q4JNX8
        Length = 1500

 Score = 196 (74.1 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
 Identities = 32/78 (41%), Positives = 55/78 (70%)

Query:   316 LADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY 375
             +A++    ++  ER RVQ +FM G++ ++ AT++FGMG+D+ +VR ++H+ MP +  +Y 
Sbjct:  1016 IAESYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYV 1075

Query:   376 QESGRAGRDGLQSYCRIY 393
             QE GRAGRDG  + C ++
Sbjct:  1076 QEIGRAGRDGKDAQCHLF 1093

 Score = 178 (67.7 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
 Identities = 67/239 (28%), Positives = 115/239 (48%)

Query:   107 RNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIK 166
             R+  IS ++S   +   DD+   V+G S   +   I S  T+T+ +A +E+++  + ++ 
Sbjct:   768 RSRCISLVISPL-VSLMDDQ---VSGLSPKLKAVCIHSNMTRTQREAAIEKVK--QGKVH 821

Query:   167 LLYVTPERAVTESFH--YLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE-LRQ 223
             +L ++PE  V   F     L    +   +A+  +DEAHCVSEW H+FRP Y RL + LR+
Sbjct:   822 VLLLSPEALVGGGFSGSSCLPPADQLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRE 881

Query:   224 FTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV-FKTSTFRSNLFYDVIFDDLLKDSY 282
               G +  ++ LTATA  +  +D+   L  +    +  + ++   NL   V  D   +D  
Sbjct:   882 RLGVNC-LLGLTATATRATAEDVAHHLGVSPEGGIPVRMASVPPNLHLSVSMDRN-RD-- 937

Query:   283 AHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKV-------NKHERSRVQE 334
                +  +    G+     +  I+YC  RE T  ++  LR  +       N H  S+ QE
Sbjct:   938 ---QALVTLLKGERFGCLDSVIVYCTRREETQRISALLRTSLQGVTVSANSHLNSQEQE 993


>UNIPROTKB|F1RSP7 [details] [associations]
            symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
            GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
            EMBL:CU468594 Ensembl:ENSSSCT00000006477 Uniprot:F1RSP7
        Length = 1204

 Score = 198 (74.8 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
 Identities = 36/78 (46%), Positives = 53/78 (67%)

Query:   316 LADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY 375
             +A+A    +   ER RVQ +FM G + V+ AT++FGMG+DR +VR V+H G+P S  +Y 
Sbjct:   749 VAEAYHAGMCSRERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYV 808

Query:   376 QESGRAGRDGLQSYCRIY 393
             Q  GRAGRDG  ++C ++
Sbjct:   809 QAVGRAGRDGQPAHCHLF 826

 Score = 173 (66.0 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
 Identities = 65/213 (30%), Positives = 103/213 (48%)

Query:   111 ISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYV 170
             ISP++S       DD+   V+G     +   I SG +K +  + L++ R    ++++L +
Sbjct:   537 ISPLMS-----LMDDQ---VSGLPPGLKAACIHSGMSKKQRNSALQKAR--SAQVQVLML 586

Query:   171 TPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE-LRQFTGNSI 229
             +PE A+  +    L  L +   +A+  +DEAHC+S+W H+FRP Y R+ + LR+  G S 
Sbjct:   587 SPE-ALAGAGAAGLAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSC 645

Query:   230 PIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFI 289
               + LTATA  S   D+   L   +   +    T  +NL   V  D   +D      + +
Sbjct:   646 -FLGLTATATRSTALDVAQHLGVAEESVLRGQGTIPANLHLSVSMD---RDP----DQAL 697

Query:   290 EKCLGKDNK-ANNCGIIYCRTREHTTDLADALR 321
                L  D   A +  IIYC  RE T  +A  LR
Sbjct:   698 VTLLQSDRFCALDSIIIYCNRREDTERVAALLR 730


>UNIPROTKB|K7GSZ9 [details] [associations]
            symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            InterPro:IPR021110 Pfam:PF11719 EMBL:CU468594
            Ensembl:ENSSSCT00000036186 Uniprot:K7GSZ9
        Length = 1209

 Score = 198 (74.8 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
 Identities = 36/78 (46%), Positives = 53/78 (67%)

Query:   316 LADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY 375
             +A+A    +   ER RVQ +FM G + V+ AT++FGMG+DR +VR V+H G+P S  +Y 
Sbjct:   754 VAEAYHAGMCSRERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYV 813

Query:   376 QESGRAGRDGLQSYCRIY 393
             Q  GRAGRDG  ++C ++
Sbjct:   814 QAVGRAGRDGQPAHCHLF 831

 Score = 173 (66.0 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
 Identities = 65/213 (30%), Positives = 103/213 (48%)

Query:   111 ISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYV 170
             ISP++S       DD+   V+G     +   I SG +K +  + L++ R    ++++L +
Sbjct:   542 ISPLMS-----LMDDQ---VSGLPPGLKAACIHSGMSKKQRNSALQKAR--SAQVQVLML 591

Query:   171 TPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE-LRQFTGNSI 229
             +PE A+  +    L  L +   +A+  +DEAHC+S+W H+FRP Y R+ + LR+  G S 
Sbjct:   592 SPE-ALAGAGAAGLAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSC 650

Query:   230 PIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFI 289
               + LTATA  S   D+   L   +   +    T  +NL   V  D   +D      + +
Sbjct:   651 -FLGLTATATRSTALDVAQHLGVAEESVLRGQGTIPANLHLSVSMD---RDP----DQAL 702

Query:   290 EKCLGKDNK-ANNCGIIYCRTREHTTDLADALR 321
                L  D   A +  IIYC  RE T  +A  LR
Sbjct:   703 VTLLQSDRFCALDSIIIYCNRREDTERVAALLR 735


>UNIPROTKB|F1RV44 [details] [associations]
            symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
            [GO:0045875 "negative regulation of sister chromatid cohesion"
            evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
            "positive regulation of cell proliferation" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
            GO:GO:0003676 GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756
            GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043473 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0008026 GO:GO:0045875 InterPro:IPR021110 Pfam:PF11719
            OMA:DMPEEAI EMBL:CU468594 Ensembl:ENSSSCT00000006463 Uniprot:F1RV44
        Length = 1227

 Score = 198 (74.8 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
 Identities = 36/78 (46%), Positives = 53/78 (67%)

Query:   316 LADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY 375
             +A+A    +   ER RVQ +FM G + V+ AT++FGMG+DR +VR V+H G+P S  +Y 
Sbjct:   772 VAEAYHAGMCSRERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYV 831

Query:   376 QESGRAGRDGLQSYCRIY 393
             Q  GRAGRDG  ++C ++
Sbjct:   832 QAVGRAGRDGQPAHCHLF 849

 Score = 173 (66.0 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
 Identities = 65/213 (30%), Positives = 103/213 (48%)

Query:   111 ISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYV 170
             ISP++S       DD+   V+G     +   I SG +K +  + L++ R    ++++L +
Sbjct:   560 ISPLMS-----LMDDQ---VSGLPPGLKAACIHSGMSKKQRNSALQKAR--SAQVQVLML 609

Query:   171 TPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE-LRQFTGNSI 229
             +PE A+  +    L  L +   +A+  +DEAHC+S+W H+FRP Y R+ + LR+  G S 
Sbjct:   610 SPE-ALAGAGAAGLAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSC 668

Query:   230 PIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFI 289
               + LTATA  S   D+   L   +   +    T  +NL   V  D   +D      + +
Sbjct:   669 -FLGLTATATRSTALDVAQHLGVAEESVLRGQGTIPANLHLSVSMD---RDP----DQAL 720

Query:   290 EKCLGKDNK-ANNCGIIYCRTREHTTDLADALR 321
                L  D   A +  IIYC  RE T  +A  LR
Sbjct:   721 VTLLQSDRFCALDSIIIYCNRREDTERVAALLR 753


>UNIPROTKB|A5D786 [details] [associations]
            symbol:RECQL4 "RECQL4 protein" species:9913 "Bos taurus"
            [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
            [GO:0045875 "negative regulation of sister chromatid cohesion"
            evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
            "positive regulation of cell proliferation" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0008284 GO:GO:0003676 GO:GO:0006310
            GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043473 eggNOG:COG0514 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0045875 CTD:9401
            HOGENOM:HOG000264957 HOVERGEN:HBG065925 KO:K10730
            InterPro:IPR021110 Pfam:PF11719 OrthoDB:EOG4CJVGG EMBL:DAAA02037439
            EMBL:BC140466 IPI:IPI00852560 RefSeq:NP_001091506.1
            UniGene:Bt.27882 STRING:A5D786 Ensembl:ENSBTAT00000056581
            GeneID:515472 KEGG:bta:515472 OMA:DMPEEAI NextBio:20871839
            Uniprot:A5D786
        Length = 1218

 Score = 196 (74.1 bits), Expect = 7.4e-25, Sum P(2) = 7.4e-25
 Identities = 35/78 (44%), Positives = 52/78 (66%)

Query:   316 LADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY 375
             +A+A    +   ER RVQ +FM G + ++ AT++FGMG+DR +VR V+H G+P S   Y 
Sbjct:   754 VAEAYHAGLCSRERRRVQRAFMEGRLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFETYV 813

Query:   376 QESGRAGRDGLQSYCRIY 393
             Q  GRAGRDG  ++C ++
Sbjct:   814 QAVGRAGRDGQPAHCHLF 831

 Score = 171 (65.3 bits), Expect = 7.4e-25, Sum P(2) = 7.4e-25
 Identities = 59/182 (32%), Positives = 86/182 (47%)

Query:   142 IVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEA 201
             I SG TK +  + L++ R    R+++L ++PE  V      LL  L     +A+  +DEA
Sbjct:   567 IHSGMTKKQRDSALQKARAA--RVQVLMLSPEALVGAGASTLLSQLP---PVAFACLDEA 621

Query:   202 HCVSEWGHDFRPTYRRLGE-LRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK 260
             HC+S+W H+FRP Y R+ + LR   G     + LTATA  S   D+   L   +   +  
Sbjct:   622 HCLSQWSHNFRPCYLRVCQTLRDQMGVHC-FLGLTATATRSTALDVAWHLGVTEESVLRG 680

Query:   261 TSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDN-KANNCGIIYCRTREHTTDLADA 319
              +T   NL   V  D   +D      + +   L  D  +A    IIYC  RE T  +A  
Sbjct:   681 PATIPDNLHLSVSSD---RDP----DQALVTLLRSDRFRALGSVIIYCHRREDTERVAAL 733

Query:   320 LR 321
             LR
Sbjct:   734 LR 735


>UNIPROTKB|Q33DM4 [details] [associations]
            symbol:recql4 "RecQ4 protein" species:8355 "Xenopus laevis"
            [GO:0000785 "chromatin" evidence=IDA] [GO:0003682 "chromatin
            binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA replication"
            evidence=IMP] [GO:0035563 "positive regulation of chromatin
            binding" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006260
            GO:GO:0008270 GO:GO:0000785 GO:GO:0003682 GO:GO:0003676
            Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0035563 CTD:9401
            HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110 Pfam:PF11719
            EMBL:AB213025 RefSeq:NP_001089182.1 UniGene:Xl.51337
            ProteinModelPortal:Q33DM4 GeneID:734225 KEGG:xla:734225
            Xenbase:XB-GENE-997817 Uniprot:Q33DM4
        Length = 1503

 Score = 196 (74.1 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
 Identities = 32/78 (41%), Positives = 55/78 (70%)

Query:   316 LADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY 375
             +A++    ++  ER RVQ +FM G++ ++ AT++FGMG+D+ +VR ++H+ MP +  +Y 
Sbjct:  1019 IAESYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYV 1078

Query:   376 QESGRAGRDGLQSYCRIY 393
             QE GRAGRDG  + C ++
Sbjct:  1079 QEIGRAGRDGKDAQCHLF 1096

 Score = 173 (66.0 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
 Identities = 66/239 (27%), Positives = 114/239 (47%)

Query:   107 RNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIK 166
             R+  IS ++S   +   DD+   V+G     +   I S  T+T+ +A +E+++  + ++ 
Sbjct:   771 RSRCISLVISPL-VSLMDDQ---VSGLPPKLKAVCIHSNMTRTQREAAIEKVK--QGKVH 824

Query:   167 LLYVTPERAVTESFH--YLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE-LRQ 223
             +L ++PE  V   F     L    +   +A+  +DEAHCVSEW H+FRP Y RL + LR+
Sbjct:   825 VLLLSPEALVGGGFSGSSCLPPADQLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRE 884

Query:   224 FTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV-FKTSTFRSNLFYDVIFDDLLKDSY 282
               G +  ++ LTATA  +  +D+   L  +    +  + ++   NL   V  D   +D  
Sbjct:   885 RLGVNC-LLGLTATATRATAEDVAHHLGVSPEGGIPVRMASVPPNLHLSVSMDRN-RD-- 940

Query:   283 AHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKV-------NKHERSRVQE 334
                +  +    G+     +  I+YC  RE T  ++  LR  +       N H  S+ QE
Sbjct:   941 ---QALVTLLKGERFGCLDSVIVYCTRREETQRISALLRTSLQGVTVSANSHLNSQEQE 996


>UNIPROTKB|H9KZS5 [details] [associations]
            symbol:H9KZS5 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0043473 "pigmentation"
            evidence=IEA] [GO:0045875 "negative regulation of sister chromatid
            cohesion" evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
            evidence=IEA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
            InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00550000074520
            EMBL:AADN02044351 EMBL:AADN02044352 EMBL:AADN02044353
            Ensembl:ENSGALT00000018179 OMA:CATREST Uniprot:H9KZS5
        Length = 252

 Score = 204 (76.9 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
 Identities = 41/115 (35%), Positives = 63/115 (54%)

Query:   279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKHERSRVQESFMR 338
             ++    V   +  CL  +   N         R     +A A    +   ER RVQ +FMR
Sbjct:   134 REDTTRVAALLRTCLQDELLTNTTPGPKSGRRLQPDQIAAAYHAGLTAAERRRVQSAFMR 193

Query:   339 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 393
             G + V+ AT++FGMG+D+ +VR V+H+ MP +  +Y QE GRAGRDG  ++C ++
Sbjct:   194 GRLRVVVATVAFGMGLDKADVRAVLHYNMPRNFESYVQEIGRAGRDGEPAWCHLF 248

 Score = 101 (40.6 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
 Identities = 15/24 (62%), Positives = 20/24 (83%)

Query:   195 YIVVDEAHCVSEWGHDFRPTYRRL 218
             +  +DEAHC+SEW H+FRP+Y RL
Sbjct:     1 FACIDEAHCISEWSHNFRPSYLRL 24


>UNIPROTKB|F1RMJ3 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR012532 Pfam:PF00270 Pfam:PF08072
            PROSITE:PS00690 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006260 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0008026 EMBL:CT757491 Ensembl:ENSSSCT00000002034
            Uniprot:F1RMJ3
        Length = 541

 Score = 251 (93.4 bits), Expect = 9.6e-19, P = 9.6e-19
 Identities = 55/111 (49%), Positives = 75/111 (67%)

Query:   148 KTENKAILEELRLVK--PRIKLLYVTPERAVTES-FHYLLQHLVRYNKLAYIVVDEAHCV 204
             KT+++A    L+L K  P IKLLYVTPE+    +     L++L     LA  V+DEAHCV
Sbjct:   430 KTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYNRKLLARFVIDEAHCV 489

Query:   205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKP 255
             S+WGHDFRP Y+R+  LRQ    S+P++ALTATA P V++DI++ LK  +P
Sbjct:   490 SQWGHDFRPDYKRMNMLRQ-KFPSVPVMALTATANPRVQKDILTQLKILRP 539


>UNIPROTKB|Q47ZX4 [details] [associations]
            symbol:CPS_2945 "Putative DEAD/DEAH box helicase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
            ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
            KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
            ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
            Uniprot:Q47ZX4
        Length = 843

 Score = 248 (92.4 bits), Expect = 5.3e-18, P = 5.3e-18
 Identities = 84/294 (28%), Positives = 143/294 (48%)

Query:   145 GQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204
             GQ     K+ + +  +   + K+++ +PE +VT S   LL  L + N +A I++DEAH +
Sbjct:   230 GQLSDGEKSEIRD-NIDNDKQKVIFTSPE-SVTGSLLPLLFRLAKQNSIANIIIDEAHLI 287

Query:   205 SEWGHDFRPTYRRLG----ELRQFTGNSIPIIALTATAEPSVKQDIISVL--KFNKPYKV 258
               WG +FR  ++R G     LRQ + +    I ++AT   S    + ++     NKP  V
Sbjct:   288 DTWGSNFRSEFQRFGALVASLRQVSNSPFKTILMSATFTQSNIGSLTTLYCESDNKPIVV 347

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKE--FIEKCLGKDNKANNCGIIYCRTREHTTDL 316
                     N     I       SY +  E   ++  +G+        I+Y    + + DL
Sbjct:   348 ------NGNFLRPEI-----SSSYKNEGENNHLQSVVGRVIALPKPLILYTTLVQDSIDL 396

Query:   317 -----ADALRR------KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHW 365
                  A  L R      K +   R ++ E + + ++++I AT +FG+G+D+ NV+ V+H 
Sbjct:   397 SCHLKAIGLNRIALFNGKTDIRSREKIIEQWQKDDLDIIIATSAFGVGMDKSNVKSVIHA 456

Query:   366 GMPSSIPAYYQESGRAGRDGLQSYCR-IYHSEH---SKK-SLEYVIKTDTSTKR 414
              +P +I  YYQE GRAGRDG  +    IY+++    +KK + E +I T+   K+
Sbjct:   457 CIPDNIDRYYQEIGRAGRDGEAATSEVIYYNKQLAKAKKINSERIISTELGFKK 510


>TIGR_CMR|CPS_2945 [details] [associations]
            symbol:CPS_2945 "putative DEAD/DEAH box helicase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
            ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
            KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
            ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
            Uniprot:Q47ZX4
        Length = 843

 Score = 248 (92.4 bits), Expect = 5.3e-18, P = 5.3e-18
 Identities = 84/294 (28%), Positives = 143/294 (48%)

Query:   145 GQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204
             GQ     K+ + +  +   + K+++ +PE +VT S   LL  L + N +A I++DEAH +
Sbjct:   230 GQLSDGEKSEIRD-NIDNDKQKVIFTSPE-SVTGSLLPLLFRLAKQNSIANIIIDEAHLI 287

Query:   205 SEWGHDFRPTYRRLG----ELRQFTGNSIPIIALTATAEPSVKQDIISVL--KFNKPYKV 258
               WG +FR  ++R G     LRQ + +    I ++AT   S    + ++     NKP  V
Sbjct:   288 DTWGSNFRSEFQRFGALVASLRQVSNSPFKTILMSATFTQSNIGSLTTLYCESDNKPIVV 347

Query:   259 FKTSTFRSNLFYDVIFDDLLKDSYAHVKE--FIEKCLGKDNKANNCGIIYCRTREHTTDL 316
                     N     I       SY +  E   ++  +G+        I+Y    + + DL
Sbjct:   348 ------NGNFLRPEI-----SSSYKNEGENNHLQSVVGRVIALPKPLILYTTLVQDSIDL 396

Query:   317 -----ADALRR------KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHW 365
                  A  L R      K +   R ++ E + + ++++I AT +FG+G+D+ NV+ V+H 
Sbjct:   397 SCHLKAIGLNRIALFNGKTDIRSREKIIEQWQKDDLDIIIATSAFGVGMDKSNVKSVIHA 456

Query:   366 GMPSSIPAYYQESGRAGRDGLQSYCR-IYHSEH---SKK-SLEYVIKTDTSTKR 414
              +P +I  YYQE GRAGRDG  +    IY+++    +KK + E +I T+   K+
Sbjct:   457 CIPDNIDRYYQEIGRAGRDGEAATSEVIYYNKQLAKAKKINSERIISTELGFKK 510


>GENEDB_PFALCIPARUM|PF14_0278 [details] [associations]
            symbol:PF14_0278 "ATP-dependent DNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
            PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
            RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
            EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
            EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
            Uniprot:Q8ILG5
        Length = 1440

 Score = 244 (91.0 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
 Identities = 69/193 (35%), Positives = 102/193 (52%)

Query:   144 SGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHC 203
             SGQ    NK IL E++      K++Y +PE A+     ++L      N++  I +DE HC
Sbjct:   126 SGQKMNNNK-ILNEIK--HGIYKIVYCSPEYALNNKDVFILLK----NRILLIAIDEVHC 178

Query:   204 VSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST 263
             +SEWGHDFRP+YR+L ELR      IPI+ LTAT   +V+ DI+  L F+    + K S+
Sbjct:   179 MSEWGHDFRPSYRKLNELRIIL-KEIPIMCLTATCTKNVQSDILKNLNFDLQNCLIKRSS 237

Query:   264 F-RSNLFYDV-----IFDDL-------LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTR 310
               + NLFY V     I+ DL       LK+S    K+FI+    K    N+  +IY  ++
Sbjct:   238 VNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDN--SKICSYNST-LIYVNSK 294

Query:   311 EHTTDLADALRRK 323
             +    +   L+ K
Sbjct:   295 KECESVYSFLKEK 307

 Score = 191 (72.3 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 48/180 (26%), Positives = 90/180 (50%)

Query:   253 NKPYKVFKTSTFRSNLFYDV--IFDDLLKDSYAHVKEFIEK---CLGKD-----NKANNC 302
             NK   +F +   ++++++D+  I D  LK+S    K+FI+    C         N    C
Sbjct:   239 NKK-NLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDNSKICSYNSTLIYVNSKKEC 297

Query:   303 GIIYCRTREHTTDLADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFV 362
               +Y   +E    L       +   ++    E F++ EI +I AT++FGMGID+ ++R +
Sbjct:   298 ESVYSFLKEKGL-LVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFGMGIDKPDIRRI 356

Query:   363 VHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFK 422
             +H+G   S+ AY Q+ GRAGRD   +   ++   + +  ++ +I  + +T    +E  F+
Sbjct:   357 IHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKNIILRE-NTANNLIETNFQ 415

 Score = 38 (18.4 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query:   392 IYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEY 430
             IY+  H+   +    KT T    E L   + NY    +Y
Sbjct:   984 IYNPNHNNSPIPINAKTSTLKNFENLISSY-NYYDRNKY 1021

 Score = 38 (18.4 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query:   388 SYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
             SY  I  S   K +   +I  +   +    E   KN +   EY E
Sbjct:   799 SYITI-ESGDEKGNTNCIINKENINRDNNFEKTHKNNIEKYEYIE 842


>UNIPROTKB|Q8ILG5 [details] [associations]
            symbol:PF14_0278 "ATP-dependent DNA helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
            PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
            RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
            EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
            EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
            Uniprot:Q8ILG5
        Length = 1440

 Score = 244 (91.0 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
 Identities = 69/193 (35%), Positives = 102/193 (52%)

Query:   144 SGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHC 203
             SGQ    NK IL E++      K++Y +PE A+     ++L      N++  I +DE HC
Sbjct:   126 SGQKMNNNK-ILNEIK--HGIYKIVYCSPEYALNNKDVFILLK----NRILLIAIDEVHC 178

Query:   204 VSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST 263
             +SEWGHDFRP+YR+L ELR      IPI+ LTAT   +V+ DI+  L F+    + K S+
Sbjct:   179 MSEWGHDFRPSYRKLNELRIIL-KEIPIMCLTATCTKNVQSDILKNLNFDLQNCLIKRSS 237

Query:   264 F-RSNLFYDV-----IFDDL-------LKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTR 310
               + NLFY V     I+ DL       LK+S    K+FI+    K    N+  +IY  ++
Sbjct:   238 VNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDN--SKICSYNST-LIYVNSK 294

Query:   311 EHTTDLADALRRK 323
             +    +   L+ K
Sbjct:   295 KECESVYSFLKEK 307

 Score = 191 (72.3 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 48/180 (26%), Positives = 90/180 (50%)

Query:   253 NKPYKVFKTSTFRSNLFYDV--IFDDLLKDSYAHVKEFIEK---CLGKD-----NKANNC 302
             NK   +F +   ++++++D+  I D  LK+S    K+FI+    C         N    C
Sbjct:   239 NKK-NLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDNSKICSYNSTLIYVNSKKEC 297

Query:   303 GIIYCRTREHTTDLADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFV 362
               +Y   +E    L       +   ++    E F++ EI +I AT++FGMGID+ ++R +
Sbjct:   298 ESVYSFLKEKGL-LVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFGMGIDKPDIRRI 356

Query:   363 VHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFK 422
             +H+G   S+ AY Q+ GRAGRD   +   ++   + +  ++ +I  + +T    +E  F+
Sbjct:   357 IHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKNIILRE-NTANNLIETNFQ 415

 Score = 38 (18.4 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query:   392 IYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEY 430
             IY+  H+   +    KT T    E L   + NY    +Y
Sbjct:   984 IYNPNHNNSPIPINAKTSTLKNFENLISSY-NYYDRNKY 1021

 Score = 38 (18.4 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query:   388 SYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
             SY  I  S   K +   +I  +   +    E   KN +   EY E
Sbjct:   799 SYITI-ESGDEKGNTNCIINKENINRDNNFEKTHKNNIEKYEYIE 842


>UNIPROTKB|F1RMJ2 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR018982 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 GO:GO:0043140 GeneTree:ENSGT00550000074520
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:CT757491
            Ensembl:ENSSSCT00000002035 OMA:REMTENT Uniprot:F1RMJ2
        Length = 511

 Score = 229 (85.7 bits), Expect = 2.8e-16, P = 2.8e-16
 Identities = 46/105 (43%), Positives = 63/105 (60%)

Query:   329 RSRVQESFMRGE-INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ 387
             R  VQ  ++  +   VI ATI+FGMGID+ +VRFV+H  +P S+  YYQESGRAGRDG  
Sbjct:    24 RDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEI 83

Query:   388 SYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 432
             S C ++++ H    L+ +I  +        E  F N  SM+ YCE
Sbjct:    84 SQCLLFYTYHDVTRLKRLILMEKDGNHHTKETHFNNLYSMVHYCE 128


>UNIPROTKB|J3KRM6 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
            PROSITE:PS51194 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
            EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000582464
            Uniprot:J3KRM6
        Length = 118

 Score = 198 (74.8 bits), Expect = 3.6e-15, P = 3.6e-15
 Identities = 32/67 (47%), Positives = 49/67 (73%)

Query:   350 FGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTD 409
             FGMG+D+ NVRFV HW +  S+  YYQESGRAGRDG  S+CR+Y+S + +  + ++I+ +
Sbjct:     2 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKE 61

Query:   410 TSTKREQ 416
              +  +E+
Sbjct:    62 VAKLQEK 68


>ASPGD|ASPL0000073665 [details] [associations]
            symbol:AN5092 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001303
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
            GO:GO:0008026 EMBL:AACD01000086 InterPro:IPR022698 Pfam:PF12013
            RefSeq:XP_662696.1 ProteinModelPortal:Q5B2Y8
            EnsemblFungi:CADANIAT00005288 GeneID:2872891 KEGG:ani:AN5092.2
            HOGENOM:HOG000217656 OrthoDB:EOG45XC49 Uniprot:Q5B2Y8
        Length = 1571

 Score = 223 (83.6 bits), Expect = 8.1e-15, P = 8.1e-15
 Identities = 66/243 (27%), Positives = 110/243 (45%)

Query:   167 LLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTG 226
             ++ VTPE      FH  L    +  +L  IV+DE H +     DF+P   RLG L     
Sbjct:   998 IVLVTPESTENPDFHTFLNRQRQMRRLDRIVIDECHVILNDQKDFQPAMARLGRL---VS 1054

Query:   227 NSIPIIALTATAEPSVKQDIISVLKFNKP-YKVFKTSTFRSNLFYDVIFDDLLKD----- 280
                 ++ LTA   P  +   +  +K  +    + +  T R N+ Y ++   L +      
Sbjct:  1055 AQTQLVFLTAMLPPIEEARFLRRIKHQRSEVGIHRARTSRRNVAYRMVRPSLPRGVPRKP 1114

Query:   281 ----SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKH---ERSRVQ 333
                 +  +V+ FI++ +      +   I+Y   +     ++  L  +       +++ V 
Sbjct:  1115 HQWLTQPNVRGFIQQRI--QQAGDGQVIVYANIKSQVDAISCELGCEAYHSAVLDQTGVM 1172

Query:   334 ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 393
             + F   +  +I AT + GMGID  ++R V+H G P ++  Y QESGRAGRDGL S   I 
Sbjct:  1173 QRFQSSQTRIIAATSALGMGIDIPDIRCVIHLGRPRTLLDYSQESGRAGRDGLASKAVIV 1232

Query:   394 HSE 396
             H +
Sbjct:  1233 HPQ 1235


>POMBASE|SPBCPT2R1.08c [details] [associations]
            symbol:tlh2 "RecQ type DNA helicase Tlh1" species:4896
            "Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
            recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
            region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 PomBase:SPBCPT2R1.08c
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 EMBL:CU329671
            GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0000781 GO:GO:0000722 HOGENOM:HOG000213224 OrthoDB:EOG4XH37R
            EMBL:BX784043 RefSeq:XP_001713158.1 ProteinModelPortal:Q1RKN3
            EnsemblFungi:SPBCPT2R1.08c.1 GeneID:5802845 KEGG:spo:SPBCPT2R1.08c
            NextBio:20892152 Uniprot:Q1RKN3
        Length = 1919

 Score = 221 (82.9 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 81/277 (29%), Positives = 136/277 (49%)

Query:   151 NKAILEELRL-VKPRIKLLYV-TPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG 208
             N    +++RL ++ ++  L++ T E A+T S     + L    +LA +V+DEAH +   G
Sbjct:  1272 NWTAFKDVRLTLETQLPDLFILTYESALTNSGLRFFESLATLGRLARVVIDEAHLLLTSG 1331

Query:   209 HDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK-TSTFRSN 267
               +R    R   L   +G   P+  L+AT    +  ++++   F   + V + TST R N
Sbjct:  1332 A-WRTALSRASRL---SGLYAPLHLLSATFPRQL--EMVARQTFCTNFYVLRETSTAREN 1385

Query:   268 LFYDVI-FD--DLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTRE---------HTTD 315
             +FY +  +D  + L D    +K    K    D +A    II+CRT++         H +D
Sbjct:  1386 IFYFLHPYDNTEFLLDLRTLMKR--TKVFEGDGRA----IIFCRTKKDVEYIHRRLHQSD 1439

Query:   316 L-----ADALRRKVNKHERSRVQESFMR--GEINVITATISFGMGIDRQNVRFVVHWGMP 368
             L            V+  ER    ++F    G+  ++ AT +FG+GI+   VR VVH+G+P
Sbjct:  1440 LFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLP 1499

Query:   369 SSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
             +S   Y QE+GRAGRDG  +   +++ ++      YV
Sbjct:  1500 ASSMDYVQETGRAGRDGKYAIAALFYEKYDSTWSSYV 1536


>POMBASE|SPAC212.11 [details] [associations]
            symbol:tlh1 "RecQ type DNA helicase" species:4896
            "Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
            recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
            region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR004695 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF03595 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 PomBase:SPBCPT2R1.08c GO:GO:0016021 GO:GO:0005524
            GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
            GO:GO:0008270 GO:GO:0055085 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000781
            GO:GO:0000722 eggNOG:COG0514 EMBL:BK005597
            ProteinModelPortal:Q5EAK4 TCDB:2.A.16.2.2 HOGENOM:HOG000213224
            OrthoDB:EOG4XH37R NextBio:20892297 Uniprot:Q5EAK4
        Length = 2100

 Score = 221 (82.9 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 81/277 (29%), Positives = 136/277 (49%)

Query:   151 NKAILEELRL-VKPRIKLLYV-TPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG 208
             N    +++RL ++ ++  L++ T E A+T S     + L    +LA +V+DEAH +   G
Sbjct:  1453 NWTAFKDVRLTLETQLPDLFILTYESALTNSGLRFFESLATLGRLARVVIDEAHLLLTSG 1512

Query:   209 HDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK-TSTFRSN 267
               +R    R   L   +G   P+  L+AT    +  ++++   F   + V + TST R N
Sbjct:  1513 A-WRTALSRASRL---SGLYAPLHLLSATFPRQL--EMVARQTFCTNFYVLRETSTAREN 1566

Query:   268 LFYDVI-FD--DLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTRE---------HTTD 315
             +FY +  +D  + L D    +K    K    D +A    II+CRT++         H +D
Sbjct:  1567 IFYFLHPYDNTEFLLDLRTLMKR--TKVFEGDGRA----IIFCRTKKDVEYIHRRLHQSD 1620

Query:   316 L-----ADALRRKVNKHERSRVQESFMR--GEINVITATISFGMGIDRQNVRFVVHWGMP 368
             L            V+  ER    ++F    G+  ++ AT +FG+GI+   VR VVH+G+P
Sbjct:  1621 LFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLP 1680

Query:   369 SSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
             +S   Y QE+GRAGRDG  +   +++ ++      YV
Sbjct:  1681 ASSMDYVQETGRAGRDGKYAIAALFYEKYDSTWSSYV 1717


>FB|FBgn0040290 [details] [associations]
            symbol:RecQ4 "RecQ4" species:7227 "Drosophila melanogaster"
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0003678 "DNA
            helicase activity" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008094 "DNA-dependent
            ATPase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
            evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS;IMP]
            [GO:0006302 "double-strand break repair" evidence=IMP] [GO:0008284
            "positive regulation of cell proliferation" evidence=IMP]
            [GO:0048477 "oogenesis" evidence=IMP] [GO:0045740 "positive
            regulation of DNA replication" evidence=IMP] [GO:0010971 "positive
            regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
            [GO:0006284 "base-excision repair" evidence=IMP] [GO:0051301 "cell
            division" evidence=IMP] [GO:0002164 "larval development"
            evidence=IMP] [GO:0007307 "eggshell chorion gene amplification"
            evidence=IMP] [GO:0036292 "DNA rewinding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
            [GO:0032508 "DNA duplex unwinding" evidence=IDA] [GO:0007095
            "mitotic G2 DNA damage checkpoint" evidence=IGI;IMP]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0007095 EMBL:AE014296 GO:GO:0051301 GO:GO:0010971
            GO:GO:0006284 GO:GO:0008284 GO:GO:0006260 GO:GO:0008270
            GO:GO:0006310 GO:GO:0003697 GO:GO:0006302 GO:GO:0045740
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0007307
            GO:GO:0002164 HSSP:P15043 KO:K10730 InterPro:IPR021110 Pfam:PF11719
            GO:GO:0036292 FlyBase:FBgn0040290 RefSeq:NP_652607.1
            UniGene:Dm.1556 ProteinModelPortal:Q9VSE6 SMR:Q9VSE6 IntAct:Q9VSE6
            PRIDE:Q9VSE6 EnsemblMetazoa:FBtr0076729 GeneID:53438
            KEGG:dme:Dmel_CG7487 UCSC:CG7487-RA CTD:53438 InParanoid:Q9VSE6
            OMA:GMPASRR PhylomeDB:Q9VSE6 GenomeRNAi:53438 NextBio:841159
            ArrayExpress:Q9VSE6 Bgee:Q9VSE6 Uniprot:Q9VSE6
        Length = 1579

 Score = 194 (73.4 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 39/115 (33%), Positives = 65/115 (56%)

Query:   279 KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKHERSRVQESFMR 338
             +D    +  FI  C+ +D +         + R+     A+     +    R  VQ++FM 
Sbjct:  1105 RDECERIAGFIRTCV-QDRREPTQD--QTKKRKRVNWQAEPYHAGMPASRRRTVQKAFMS 1161

Query:   339 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 393
              E+ ++ ATI+FGMGI++ ++R V+H+ MP +  +Y QE GRAGRDGL S+C ++
Sbjct:  1162 NELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIGRAGRDGLPSHCHLF 1216

 Score = 143 (55.4 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 60/236 (25%), Positives = 96/236 (40%)

Query:   130 VTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVT----ESFHYLLQ 185
             VTG     +   + + QT  +   I +   +    I +L V+PE  V       F  +L+
Sbjct:   931 VTGVPHFLRAHCLHTNQTAPQRMKIQQ--MIANGEIDILLVSPEAVVAGERATGFGAILR 988

Query:   186 HLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE-LRQFTGNSIPIIALTATAEPSVKQ 244
              L     +A+  +DEAHCVS+W H+FRP+Y  + + LR+  G    ++ LTATA    + 
Sbjct:   989 QLP---PIAFACIDEAHCVSQWSHNFRPSYLMICKVLRKNLGVRT-VLGLTATATLPTRV 1044

Query:   245 DIISVLKFNKPYK-VFKTSTFRSNLFYDVIFDDLLKDSYAHV--KEFIEKCLGKDNKANN 301
              II+ L  +   + +        NL   V  D+    +   +   E  E C         
Sbjct:  1045 SIINHLGISDGERGIISDIPLPDNLVLSVSKDENRDAALLQLLNSERFEPCQSI------ 1098

Query:   302 CGIIYCRTREHTTDLADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQ 357
               IIYC  R+    +A  +R  V         ++  R  +N        GM   R+
Sbjct:  1099 --IIYCTRRDECERIAGFIRTCVQDRREPTQDQTKKRKRVNWQAEPYHAGMPASRR 1152


>UNIPROTKB|E2RDN3 [details] [associations]
            symbol:E2RDN3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00098 Pfam:PF00270 PROSITE:PS50158 SMART:SM00343
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
            Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GeneTree:ENSGT00550000074520 GO:GO:0008026
            OMA:DMPEEAI EMBL:AAEX03008976 EMBL:AAEX03008977 EMBL:AAEX03008978
            Ensembl:ENSCAFT00000002463 Uniprot:E2RDN3
        Length = 1163

 Score = 167 (63.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
 Identities = 54/182 (29%), Positives = 91/182 (50%)

Query:   142 IVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEA 201
             I SG ++ + ++ L+++   +  ++LL ++PE  V      +  HL +   +A+  +DEA
Sbjct:   566 IHSGMSQKQRESALQKVHAAQ--VQLLVLSPETLVGAGAG-MPGHLPQLPPVAFACIDEA 622

Query:   202 HCVSEWGHDFRPTYRRLGE-LRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK 260
             HC+S+W H+FRP Y R+ + LR+  G     + LTATA  S  +D+   L   +   +  
Sbjct:   623 HCISQWSHNFRPCYLRVCKVLREHMGVRC-FLGLTATATRSTARDVARHLGVAEELVLRG 681

Query:   261 TSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDN-KANNCGIIYCRTREHTTDLADA 319
              +T  SNL   V  D   +D      + +   L  D  +A +  I+YC  R  T  +A  
Sbjct:   682 PATVPSNLHLSVSRD---RDP----DQALVTLLQSDRFRALSSVIVYCHRRGDTERVAAL 734

Query:   320 LR 321
             LR
Sbjct:   735 LR 736

 Score = 40 (19.1 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query:    11 SAVGKSSSLTGNQQDRKGGKVSE 33
             +AVG  S   GN Q +K  +  E
Sbjct:   235 AAVGAGSPEAGNSQGKKRRRTKE 257


>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
            symbol:PFL1310c "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
            metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
            HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
            ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
            EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
            EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
            Uniprot:Q8I5E7
        Length = 742

 Score = 148 (57.2 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 59/252 (23%), Positives = 113/252 (44%)

Query:   157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYR 216
             ++  +K    ++  TP R +     +L    +   K  Y+V+DEA  + + G  F    R
Sbjct:   470 QINNLKKGADIIVATPGRLLD----FLENGNINLLKCIYVVIDEADRLLDMG--FEKQLR 523

Query:   217 RLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVF--KTS-TFRSNLFYDVI 273
             ++  + Q   N   ++ LTAT    V++       ++ P K+   K   T   N+  +VI
Sbjct:   524 KI--MTQVNKNK-QLLFLTATWPEQVRKLAYDFCSYD-PVKIQIGKNELTANKNIEQNVI 579

Query:   274 FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALR-RKVN------- 325
                 + D    + +++     K+N  NN  +I+C T+ +  +L   LR  + N       
Sbjct:   580 ISSSI-DMKKKLLDWL-----KENYENNKILIFCDTKRNCDNLCKELRYHQYNALSIHGD 633

Query:   326 --KHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 383
               + ER R+  ++     N++ AT     G+D +N+  V+++ +P++I  Y    GR GR
Sbjct:   634 KQQRERDRILNNYKTDRCNILVATDVASRGLDIKNISVVINYDIPNTIEDYIHRIGRTGR 693

Query:   384 DGLQSYCRIYHS 395
              G +    ++ S
Sbjct:   694 AGKKGKSILFFS 705


>TAIR|locus:2087852 [details] [associations]
            symbol:PMH2 "putative mitochondrial RNA helicase 2"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
            evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
            GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
            UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
            PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
            KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
            HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
            ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
            Uniprot:Q9LUW5
        Length = 616

 Score = 138 (53.6 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 53/273 (19%), Positives = 117/273 (42%)

Query:   156 EELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG--HDFRP 213
             +++R +   + +   TP R +      + +  +  +++ ++V+DEA  + + G   D   
Sbjct:   218 QQMRQLDYGVDVAVGTPGRVID----LMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEI 273

Query:   214 TYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI 273
                +L E RQ        +  +AT    ++   ++    N P  V         L   + 
Sbjct:   274 ILEKLPEKRQS-------MMFSATMPSWIRS--LTKKYLNNPLTVDLVGDSDQKLADGIT 324

Query:   274 FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK---------V 324
                ++ DSY      I   + +  K   C I++ +T+     L+ AL R          +
Sbjct:   325 TYSIIADSYGRAS-IIGPLVTEHAKGGKC-IVFTQTKRDADRLSYALARSFKCEALHGDI 382

Query:   325 NKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384
             ++ +R R    F  G  N++ AT     G+D  NV  ++H+ +P++   +   +GR GR 
Sbjct:   383 SQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRA 442

Query:   385 GLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQL 417
             G +    + +S+   ++++ +I+ +  ++  +L
Sbjct:   443 GKKGSAILIYSQDQSRAVK-IIEREVGSRFTEL 474


>TIGR_CMR|SPO_1443 [details] [associations]
            symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
            ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
            PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
        Length = 471

 Score = 136 (52.9 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 62/270 (22%), Positives = 118/270 (43%)

Query:   156 EELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTY 215
             E+  L+   + +L  TP R +    H+    L+    +  +VVDEA  + + G  F P  
Sbjct:   115 EQDALIDRGVDVLIATPGRLLD---HFERGKLL-LTGVQIMVVDEADRMLDMG--FIPDI 168

Query:   216 RRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI-F 274
              R+  L  FT  ++     +AT  P +++   + L      +V + +T    +   V+ F
Sbjct:   169 ERIFSLTPFTRQTL---FFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLF 225

Query:   275 DDLLKDSYAHVKEFIEKCLGKDNKANNC--GIIYCRTREHTTDLADALRR---------- 322
                 +D  A  K  + + L  D +   C   II+C  +     +A +L++          
Sbjct:   226 KGSRRDREASEKRAVLRAL-IDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHG 284

Query:   323 KVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE---SG 379
              +++ +R+R  + F  G++ ++ A+     G+D  +V  V ++ +P     Y      +G
Sbjct:   285 DLDQSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTG 344

Query:   380 RAGRDGLQSYCRIYHSEHSKKSLEYVIKTD 409
             RAGRDG      I   E +  ++E +I+ D
Sbjct:   345 RAGRDGKAITLCIPRDEKALDAIEKLIQKD 374


>WB|WBGene00011032 [details] [associations]
            symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
            OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
            ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
            EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
            KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
            InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
        Length = 581

 Score = 129 (50.5 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
 Identities = 27/88 (30%), Positives = 45/88 (51%)

Query:   318 DALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE 377
             D++    +  ER    E F RGEI V+  T   G G+D  +V  V+++ +P+SI +Y   
Sbjct:   403 DSINSGKSDKERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHR 462

Query:   378 SGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
              GR GR G   +   Y ++   K ++ +
Sbjct:   463 VGRTGRAGKSGHAVTYFTDADMKYIKSI 490

 Score = 52 (23.4 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query:   274 FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTD 315
             +D+L +     V+  IEK + K+ K  +  I+  R R H +D
Sbjct:    42 YDELREKMIGKVESKIEKKVKKNKKKASIEILASRKRVHDSD 83


>TIGR_CMR|CBU_0305 [details] [associations]
            symbol:CBU_0305 "ATP-dependent DNA helicase RecG"
            species:227377 "Coxiella burnetii RSA 493" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006281 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006310 GO:GO:0004003
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            HOGENOM:HOG000036617 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
            TIGRFAMs:TIGR00643 HSSP:Q9WY48 RefSeq:NP_819348.1
            ProteinModelPortal:Q83EL4 PRIDE:Q83EL4 GeneID:1208187
            KEGG:cbu:CBU_0305 PATRIC:17929305
            BioCyc:CBUR227377:GJ7S-312-MONOMER Uniprot:Q83EL4
        Length = 704

 Score = 137 (53.3 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 59/234 (25%), Positives = 105/234 (44%)

Query:   181 HYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPI-IALTATAE 239
             H L Q  V + +LA+IV+DE H    +G      ++RL    + T N  P  + +TAT  
Sbjct:   392 HALFQAAVTFQQLAFIVIDEQH---RFG-----VHQRLALKEKATPNYHPHQLIMTATPI 443

Query:   240 P-----SVKQDI-ISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKC- 292
             P     +   D+  S++    P +   T+   SN   D + + + K+     K+    C 
Sbjct:   444 PRTLAMTAYADLDFSIIDEQPPGRKPITTVLISNSRRDKVIERIKKNC-EQGKQVYWVCT 502

Query:   293 LGKDNKANNCGII---YCRTREHTTDLADAL-RRKVNKHERSRVQESFMRGEINVITATI 348
             L  D++   C      + + ++  T+L+  L   ++ K E+  V  +F  G+I+++ AT 
Sbjct:   503 LITDSEVLQCETAEATFKKLQQSFTNLSVGLIHGRLTKEEKDVVMGAFKNGDIDLLVATT 562

Query:   349 SFGMGIDRQNVRF-VVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 401
                +G+D  N    V+       +   +Q  GR GR   +SYC + + E   K+
Sbjct:   563 VIEVGVDVPNASLMVIENSERLGLAQIHQLRGRVGRGEQKSYCVLLYQEPLSKN 616


>ZFIN|ZDB-GENE-050208-665 [details] [associations]
            symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
            Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
            IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
            Uniprot:F1R8P9
        Length = 584

 Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 59/263 (22%), Positives = 118/263 (44%)

Query:   157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFR--PT 214
             +L  +K  IK++  TP R +      L Q  V+ + +  +VVDEA  + + G   +    
Sbjct:   286 QLHRLKHNIKIVIGTPGRLL----EILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDI 341

Query:   215 YRRLGELRQ--FTGNSIPIIALTATAEPSVKQDI-ISVLKFNKPYK------VFKTSTFR 265
               ++ E  Q   T  +IP       AE      + I++ + N+P        ++     +
Sbjct:   342 LEQVPEDHQTLLTSATIPT-GTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVEEPSK 400

Query:   266 SNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLAD-ALRRKV 324
                 ++++ D+ L      V  F++  LG D        + C   +    L   A+    
Sbjct:   401 KKKLFEILNDEKLYQPPVVV--FVDCKLGAD--------LLCEAVQKVMSLNTVAIHSDK 450

Query:   325 NKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384
              + ER+++ +  + G+ +V+ +T   G G+D  NV+ V+++ MPS++  Y  + GRAGR 
Sbjct:   451 MQWERNKIVKGLLEGQFDVVISTGILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRL 510

Query:   385 GLQSYCRIYHSEHSKKSLEYVIK 407
             G +     + + ++K+    ++K
Sbjct:   511 GHRGTAITFMNNNNKRLFLEMVK 533


>WB|WBGene00002244 [details] [associations]
            symbol:laf-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
            "masculinization of hermaphroditic germ-line" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
            HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
            EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
            ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
            KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
            ArrayExpress:D0PV95 Uniprot:D0PV95
        Length = 708

 Score = 134 (52.2 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 63/250 (25%), Positives = 110/250 (44%)

Query:   150 EN-KAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG 208
             EN K  + +LRL      +L  TP R +      + Q L+      Y+V+DEA  + + G
Sbjct:   354 ENYKDQIHKLRL---GCHILIATPGRLID----VMDQGLIGMEGCRYLVLDEADRMLDMG 406

Query:   209 HDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIIS-VLKFNKPY-KVFKTSTFRS 266
               F P  R++ E  +       I A+ +   P   Q +    LK N  +  V +  +   
Sbjct:   407 --FEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSE 464

Query:   267 NLFYDVIF-DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK-- 323
             N+   +++ ++  K SY  + + ++   G D+      +++  T+   +DLA  L R+  
Sbjct:   465 NIMQKIVWVEEDEKRSY--LMDLLD-ATG-DSSLT---LVFVETKRGASDLAYYLNRQNY 517

Query:   324 --VNKH------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY 375
               V  H      ER +  + F  G   ++ AT     G+D  NV+ V+++ +PS +  Y 
Sbjct:   518 EVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYV 577

Query:   376 QESGRAGRDG 385
                GR GR G
Sbjct:   578 HRIGRTGRVG 587


>UNIPROTKB|Q47Z59 [details] [associations]
            symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
            "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
            STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
            OMA:PKFIVAT ProtClustDB:CLSK869483
            BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
        Length = 448

 Score = 131 (51.2 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 66/300 (22%), Positives = 132/300 (44%)

Query:   137 YQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYI 196
             Y+  LI+ G+   +   +L++    +P  + +  TP R       +L Q     N L  +
Sbjct:   102 YKAVLILGGENFNDQVKVLQK----EP--EFIVATPGRLAD----HLTQGHFHLNGLELL 151

Query:   197 VVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPY 256
             ++DEA  + + G  F     ++ +           +  +AT + +   +  + L   KP 
Sbjct:   152 ILDEADRMLDLG--FSKELTQINKAADHRKRQT--LLFSATLDHAQVNEFATEL-LTKPK 206

Query:   257 KVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDL 316
             ++   +    ++  D+     L D+    +  ++  L  + K+    II+  TR  T  L
Sbjct:   207 RIAINAGHSEHV--DIAKRFYLADNLTQKEALLQHFLVTE-KSQQI-IIFTATRSDTDRL 262

Query:   317 AD----------ALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWG 366
             A           AL  ++N+ +R+++ ESF +G+  ++  T     G+D  NV  V+++ 
Sbjct:   263 AKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFD 322

Query:   367 MPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEH-SKKSLEYVIKTDTS-TKREQLELKFK 422
             MP     +    GR GR G +  +   +  ++  S K++E  ++   S TK E +++KFK
Sbjct:   323 MPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVEAFLQQKISFTKVEGIKVKFK 382


>TIGR_CMR|CPS_3215 [details] [associations]
            symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
            "RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
            STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
            OMA:PKFIVAT ProtClustDB:CLSK869483
            BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
        Length = 448

 Score = 131 (51.2 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 66/300 (22%), Positives = 132/300 (44%)

Query:   137 YQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYI 196
             Y+  LI+ G+   +   +L++    +P  + +  TP R       +L Q     N L  +
Sbjct:   102 YKAVLILGGENFNDQVKVLQK----EP--EFIVATPGRLAD----HLTQGHFHLNGLELL 151

Query:   197 VVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPY 256
             ++DEA  + + G  F     ++ +           +  +AT + +   +  + L   KP 
Sbjct:   152 ILDEADRMLDLG--FSKELTQINKAADHRKRQT--LLFSATLDHAQVNEFATEL-LTKPK 206

Query:   257 KVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDL 316
             ++   +    ++  D+     L D+    +  ++  L  + K+    II+  TR  T  L
Sbjct:   207 RIAINAGHSEHV--DIAKRFYLADNLTQKEALLQHFLVTE-KSQQI-IIFTATRSDTDRL 262

Query:   317 AD----------ALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWG 366
             A           AL  ++N+ +R+++ ESF +G+  ++  T     G+D  NV  V+++ 
Sbjct:   263 AKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFD 322

Query:   367 MPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEH-SKKSLEYVIKTDTS-TKREQLELKFK 422
             MP     +    GR GR G +  +   +  ++  S K++E  ++   S TK E +++KFK
Sbjct:   323 MPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVEAFLQQKISFTKVEGIKVKFK 382


>UNIPROTKB|Q81QF0 [details] [associations]
            symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:1392 "Bacillus anthracis" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
            RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
            DNASU:1085525 EnsemblBacteria:EBBACT00000011128
            EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
            GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
            KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
            ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
            BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
        Length = 450

 Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 57/276 (20%), Positives = 118/276 (42%)

Query:   154 ILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRP 213
             + ++LR +K    ++  TP R +     ++ +  +  + L+ IV+DEA  +  +G  +  
Sbjct:   114 VAQQLRKLKGNTHIVVATPGRLLD----HIRRETIDLSNLSTIVLDEADQMLYFGFLYD- 168

Query:   214 TYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI 273
                 + ++   T  S   +  +AT    +K+  ++    ++P  +   S     +  D I
Sbjct:   169 ----IEDILDETPGSKQTMLFSATIPKDIKK--LAKRYMDEPQMIQVQS---EEVTVDTI 219

Query:   274 FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR----------K 323
                +++ +     + +   + +D       +I+CRT+   + L D L+            
Sbjct:   220 EQRVIETTDRAKPDALRFVMDRDQPF--LAVIFCRTKVRASKLYDNLKGLGYNCAELHGD 277

Query:   324 VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 383
             + + +R RV +SF   +I  + AT     G+D   V  V ++ +P  + +Y    GR GR
Sbjct:   278 IPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGR 337

Query:   384 DGLQSYCRIYHSEHSKKSLEYVIKT-DTSTKREQLE 418
              G       + +   +K LE + KT     +RE +E
Sbjct:   338 AGGSGLAITFVAAKDEKHLEEIEKTLGAPIQREIIE 373


>TIGR_CMR|BA_2475 [details] [associations]
            symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
            RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
            DNASU:1085525 EnsemblBacteria:EBBACT00000011128
            EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
            GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
            KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
            ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
            BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
        Length = 450

 Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 57/276 (20%), Positives = 118/276 (42%)

Query:   154 ILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRP 213
             + ++LR +K    ++  TP R +     ++ +  +  + L+ IV+DEA  +  +G  +  
Sbjct:   114 VAQQLRKLKGNTHIVVATPGRLLD----HIRRETIDLSNLSTIVLDEADQMLYFGFLYD- 168

Query:   214 TYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI 273
                 + ++   T  S   +  +AT    +K+  ++    ++P  +   S     +  D I
Sbjct:   169 ----IEDILDETPGSKQTMLFSATIPKDIKK--LAKRYMDEPQMIQVQS---EEVTVDTI 219

Query:   274 FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR----------K 323
                +++ +     + +   + +D       +I+CRT+   + L D L+            
Sbjct:   220 EQRVIETTDRAKPDALRFVMDRDQPF--LAVIFCRTKVRASKLYDNLKGLGYNCAELHGD 277

Query:   324 VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 383
             + + +R RV +SF   +I  + AT     G+D   V  V ++ +P  + +Y    GR GR
Sbjct:   278 IPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGR 337

Query:   384 DGLQSYCRIYHSEHSKKSLEYVIKT-DTSTKREQLE 418
              G       + +   +K LE + KT     +RE +E
Sbjct:   338 AGGSGLAITFVAAKDEKHLEEIEKTLGAPIQREIIE 373


>TAIR|locus:2828586 [details] [associations]
            symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
            PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
            EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
            RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
            UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
            PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
            EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
            GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
            ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
        Length = 505

 Score = 129 (50.5 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 63/256 (24%), Positives = 113/256 (44%)

Query:   157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYR 216
             +L  ++  ++L+  TP R V      L +H +  + +   V+DE  C+ + G  FR    
Sbjct:   229 QLYRIQQGVELIIGTPGRVVD----LLSKHTIELDNIMTFVLDEVDCMLQRG--FRDQVM 282

Query:   217 RLGELRQFTGNSIPIIALTATAEP-----SVKQDII--SVLKFNKPYKVFKTSTF--RSN 267
             ++   +  +   + + + T + E      S+ ++II  S+   NKP K          + 
Sbjct:   283 QI--FQALSQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAK 340

Query:   268 LFYDVIFDDLLKDSYAHVKE----FIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK 323
                  +FD +L+ S  H K     ++   +G D  AN   ++       T   A ++  +
Sbjct:   341 QKKQKLFD-ILR-SQNHFKPPAVVYVSSRVGADLLANAITVV-------TGVKALSIHGE 391

Query:   324 VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 383
                 ER  V  SF+ GE+ V+ +T   G G+D   VR V+ + MPS+I  Y    GRA R
Sbjct:   392 KPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASR 451

Query:   384 DGLQSYCRIYHSEHSK 399
              G +    ++ +E  +
Sbjct:   452 MGEKGTAIVFVNEDDR 467


>TAIR|locus:2087832 [details] [associations]
            symbol:PMH1 "putative mitochondrial RNA helicase 1"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
            GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
            EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
            UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
            STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
            GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
            InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
            Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
        Length = 610

 Score = 129 (50.5 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 51/263 (19%), Positives = 109/263 (41%)

Query:   156 EELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG--HDFRP 213
             +++R +   I +   TP R +      + +  +  +++ ++V+DEA  + + G   D   
Sbjct:   230 QQMRELNYGIDVAVGTPGRIID----LMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEI 285

Query:   214 TYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI 273
               ++L   RQ        +  +AT    ++   ++    N P  +         L   + 
Sbjct:   286 ILQKLPAKRQS-------MMFSATMPSWIRS--LTKKYLNNPLTIDLVGDSDQKLADGIT 336

Query:   274 FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLA---------DALRRKV 324
                +  DSY      I   + +  K   C I++ +T+     LA         +AL   +
Sbjct:   337 MYSIAADSYGRAS-IIGPLVKEHGKGGKC-IVFTQTKRDADRLAFGLAKSYKCEALHGDI 394

Query:   325 NKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384
             ++ +R R    F  G  +++ AT     G+D  NV  V+H+ +P++   +   +GR GR 
Sbjct:   395 SQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRA 454

Query:   385 GLQSYCRIYHSEHSKKSLEYVIK 407
             G +    + H +   ++++ + K
Sbjct:   455 GKKGSAILIHGQDQTRAVKMIEK 477


>DICTYBASE|DDB_G0269192 [details] [associations]
            symbol:tifA "eukaryotic translation initiation factor
            4A" species:44689 "Dictyostelium discoideum" [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
            "translational initiation" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
            "translation initiation factor activity" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
            EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
            SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
            KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
        Length = 405

 Score = 126 (49.4 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 65/289 (22%), Positives = 131/289 (45%)

Query:   152 KAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDF 211
             K + ++++ ++  + ++  TP R +       L    R+ K+  +++DEA  +   G  F
Sbjct:   138 KNLSDDVKKLETGVHIVSGTPGRVLDMITRKSLP--TRHIKM--MILDEADEMLSLG--F 191

Query:   212 RPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVL-KF-NKPYKVFKTSTFRSNLF 269
             +   +++ ++ ++  N   I+ ++AT    + QD++S+  KF  KP ++      R  L 
Sbjct:   192 Q---QQINDVYRYLPNGTQIVLVSAT----LTQDVVSMTEKFMTKPVRILLK---RDELT 241

Query:   270 YDVI---FDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK--- 323
              D I   F  + K+ +    +F   C   D+      +I+C T++    L + +R     
Sbjct:   242 LDGIKQFFVSVEKEDW----KFGTLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFT 297

Query:   324 -VNKH------ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQ 376
               + H      ER  + +SF  GE  V+  T     GID Q V  V+++ +P     Y  
Sbjct:   298 VASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIH 357

Query:   377 ESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYL 425
               GR+GR G +    I   ++S   +   I+   ST+ +++ + F + +
Sbjct:   358 RIGRSGRFGRKGVA-INFVKNSDIRILRDIEQFYSTQIDEMPVNFASII 405


>TAIR|locus:504955106 [details] [associations]
            symbol:emb1138 "embryo defective 1138" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
            GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
            SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
            EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
            EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
            EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
            IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
            RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
            SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
            EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
            GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
            PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
            Uniprot:Q8L7S8
        Length = 748

 Score = 135 (52.6 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
 Identities = 25/85 (29%), Positives = 46/85 (54%)

Query:   318 DALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQE 377
             +AL   +++H+R R   +F +G+  V+ AT     G+D  NV  V+H+ +P+    +   
Sbjct:   378 EALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHR 437

Query:   378 SGRAGRDGLQSYCRIYHSEHSKKSL 402
             SGR GR G +    + H+   K+++
Sbjct:   438 SGRTGRAGKEGSAILMHTSSQKRTV 462

 Score = 38 (18.4 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query:   226 GNSIPIIALTATAEPSVKQDIISV 249
             G  +  IA T+T++ ++  D+I+V
Sbjct:   324 GIKLYAIATTSTSKRTILSDLITV 347


>TIGR_CMR|BA_2109 [details] [associations]
            symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
            RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
            ProteinModelPortal:Q81RE0 DNASU:1085806
            EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
            EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
            GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
            ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
            BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
        Length = 389

 Score = 124 (48.7 bits), Expect = 9.1e-05, P = 9.1e-05
 Identities = 30/107 (28%), Positives = 52/107 (48%)

Query:   317 ADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQ 376
             A AL  + +K ER     +F  G++ ++ AT     GID  ++  V+H  +P ++  Y  
Sbjct:   261 AAALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIH 320

Query:   377 ESGRAGRDGLQ-SYCRIYHSEHSKKSLEYVIKTD-TSTKREQLELKF 421
              SGR GR G + +   +   +  +K L++  K     TK+E  +  F
Sbjct:   321 RSGRTGRMGKEGTVVSLVTPQEERKLLQFAKKLGIVFTKQEMFKGSF 367


>CGD|CAL0001638 [details] [associations]
            symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
            evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
            RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
            SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
            KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
        Length = 399

 Score = 113 (44.8 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
 Identities = 30/100 (30%), Positives = 47/100 (47%)

Query:   296 DNKANNCGIIYCRTREHTTDLADALRRK----VNKH------ERSRVQESFMRGEINVIT 345
             DN      +I+C T+     LAD ++++    V  H      ER  +   F RG   V+ 
Sbjct:   261 DNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLI 320

Query:   346 ATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 385
             +T  +  GID Q V  V+++ +P+    Y    GR+GR G
Sbjct:   321 STDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFG 360

 Score = 53 (23.7 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query:   129 IVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLV 188
             I++GR  + Q +   +G+T T +  +LE +       + L ++P R +      +++HL 
Sbjct:    60 IISGRDTIAQAQS-GTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLG 118

Query:   189 RY 190
              Y
Sbjct:   119 DY 120


>UNIPROTKB|E2R4Y9 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
            Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
        Length = 623

 Score = 128 (50.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 62/257 (24%), Positives = 118/257 (45%)

Query:   157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYR 216
             +L  ++  +K++  TP R +      + Q  V    +  +VVDEA  + + G  F+   +
Sbjct:   316 QLYRLRQHVKVIIATPGRLLD----IIKQSSVELCGIKIVVVDEADTMLKMG--FQ---Q 366

Query:   217 RLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDD 276
             ++ ++ +   N    I ++AT   S++Q + S L  N P ++    T   NL    +   
Sbjct:   367 QVLDILEHVPNDSQTILVSATIPTSIEQ-LASQLLHN-PVRII---TGEKNLPCSSVRQI 421

Query:   277 LL-KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDL-ADALRR-----KVNKH-- 327
             +L  +  A  K+  E  +  D K     ++     +   DL ++A+++      V+ H  
Sbjct:   422 ILWVEEPAKKKKLFE--ILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSE 479

Query:   328 ----ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 383
                 ER  + +  + G+  V+ +T   G G+D  +VR VV++ MPSS+  Y  + GR GR
Sbjct:   480 KSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGR 539

Query:   384 DGLQSYCRIYHSEHSKK 400
              G       + + +SK+
Sbjct:   540 LGQNGTAITFINNNSKR 556

 Score = 42 (19.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query:    19 LTGNQQDRKGGKVSEQ 34
             L G +QD KG  +SE+
Sbjct:    75 LVGPEQDSKGSDLSEE 90


>UNIPROTKB|Q8EJQ5 [details] [associations]
            symbol:rhlB "ATP-dependent RNA helicase RhlB"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
            RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
            KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
        Length = 439

 Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 58/269 (21%), Positives = 117/269 (43%)

Query:   126 KTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185
             K +I+  +    ++ ++  G++    + +L++       + +L  T  R +     Y+ Q
Sbjct:   102 KDAILLAKHTRLKVGIVYGGESYDVQRKVLDQ------GVDILIGTTGRIID----YVRQ 151

Query:   186 HLVRYNKLAYIVVDEAHCVSEWGH--DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVK 243
              ++  N +  +V+DEA  + + G   D R  +RR+    Q        +  +AT    V+
Sbjct:   152 GIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLN-----MLFSATLSMKVQ 206

Query:   244 QDIISVLKFNKPYKVF-----KTS-TFRSNLFYDVIFDDLLKDSYAHVKE-FIEKCLGKD 296
             +  ++    N P KV      KTS   +  +FY    +D ++     ++E + EK +   
Sbjct:   207 E--LAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ-EDKMRLLLTLIEEDWPEKAIVFS 263

Query:   297 NKANNCGIIYCRTREHTTDLADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDR 356
             N  ++C  ++    E        L   V + +R R+ E F +G+++++ AT     G+  
Sbjct:   264 NTKHSCENLWSWL-EGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHI 322

Query:   357 QNVRFVVHWGMPSSIPAYYQESGRAGRDG 385
              +V  V ++ +P     Y    GR GR G
Sbjct:   323 SDVSHVYNYDLPDDCEDYVHRIGRTGRAG 351


>TIGR_CMR|SO_0407 [details] [associations]
            symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
            RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
            KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
        Length = 439

 Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 58/269 (21%), Positives = 117/269 (43%)

Query:   126 KTSIVTGRSDLYQLELIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQ 185
             K +I+  +    ++ ++  G++    + +L++       + +L  T  R +     Y+ Q
Sbjct:   102 KDAILLAKHTRLKVGIVYGGESYDVQRKVLDQ------GVDILIGTTGRIID----YVRQ 151

Query:   186 HLVRYNKLAYIVVDEAHCVSEWGH--DFRPTYRRLGELRQFTGNSIPIIALTATAEPSVK 243
              ++  N +  +V+DEA  + + G   D R  +RR+    Q        +  +AT    V+
Sbjct:   152 GIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLN-----MLFSATLSMKVQ 206

Query:   244 QDIISVLKFNKPYKVF-----KTS-TFRSNLFYDVIFDDLLKDSYAHVKE-FIEKCLGKD 296
             +  ++    N P KV      KTS   +  +FY    +D ++     ++E + EK +   
Sbjct:   207 E--LAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ-EDKMRLLLTLIEEDWPEKAIVFS 263

Query:   297 NKANNCGIIYCRTREHTTDLADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDR 356
             N  ++C  ++    E        L   V + +R R+ E F +G+++++ AT     G+  
Sbjct:   264 NTKHSCENLWSWL-EGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHI 322

Query:   357 QNVRFVVHWGMPSSIPAYYQESGRAGRDG 385
              +V  V ++ +P     Y    GR GR G
Sbjct:   323 SDVSHVYNYDLPDDCEDYVHRIGRTGRAG 351


>DICTYBASE|DDB_G0281711 [details] [associations]
            symbol:ddx27 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
            GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
            EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
            STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
            KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
        Length = 783

 Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
 Identities = 63/278 (22%), Positives = 123/278 (44%)

Query:   141 LIVSGQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDE 200
             LIV G +   NKA   ELR   P + +   TP R +    H L  H +  + L  +++DE
Sbjct:   294 LIVGGLS---NKAQEVELRK-SPDVVI--ATPGRLID---HLLNAHGIGLDDLEILILDE 344

Query:   201 AHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFK 260
             A  + + G  F+    ++ E      N   ++  +AT    VK   ++ L   +P +V  
Sbjct:   345 ADRLLDMG--FKDEINKIVE--SCPTNRQTML-FSATLNDEVKT--LAKLSLQQPIRVQV 397

Query:   261 TSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCG--IIYCRTREHT----- 313
              +  +       +  + +K    H+ +     L    +  N G  II+CR+++       
Sbjct:   398 DALMQVT---STLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRI 454

Query:   314 ----TDLADA-LRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMP 368
                 +DL  A L   +++ +R    + F  G++N + A+     G+D   V+ V+++ MP
Sbjct:   455 IFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMP 514

Query:   369 SSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 406
             +++  Y    GR  R G+      + +++ +K L+ ++
Sbjct:   515 NNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIV 552


>UNIPROTKB|H0Y6Y1 [details] [associations]
            symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0004386 EMBL:AL445483 HGNC:HGNC:25360
            ProteinModelPortal:H0Y6Y1 Ensembl:ENST00000429498 Uniprot:H0Y6Y1
        Length = 197

 Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00016
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query:   328 ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ 387
             ER  + +  + G+  V+ +T   G G+D  +VR VV++ MPSS+  Y  + GR GR G  
Sbjct:    61 ERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQN 120

Query:   388 SYCRIYHSEHSKK 400
                  + + +SK+
Sbjct:   121 GTAITFINNNSKR 133


>UNIPROTKB|P25888 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
            GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
            PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
            ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
            MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
            EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
            KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
            EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
            BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
            Genevestigator:P25888 Uniprot:P25888
        Length = 454

 Score = 122 (48.0 bits), Expect = 0.00020, P = 0.00020
 Identities = 63/272 (23%), Positives = 118/272 (43%)

Query:   153 AILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG--HD 210
             +I  ++  ++  + +L  TP R + +  H   Q+ V+ +++  +V+DEA  + + G  HD
Sbjct:   114 SINPQMMKLRGGVDVLVATPGRLL-DLEH---QNAVKLDQVEILVLDEADRMLDMGFIHD 169

Query:   211 FRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFY 270
              R    +L   RQ   N    +  +AT    +K     +L      +V + +T    +  
Sbjct:   170 IRRVLTKLPAKRQ---N----LLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQ 222

Query:   271 DVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLA-----DALRRKV- 324
              V F D  +      +E +   +GK N      +++ RT+     LA     D +R    
Sbjct:   223 HVHFVDKKRK-----RELLSHMIGKGNWQQV--LVFTRTKHGANHLAEQLNKDGIRSAAI 275

Query:   325 --NKHE--RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380
               NK +  R+R    F  G+I V+ AT     G+D + +  VV++ +P+    Y    GR
Sbjct:   276 HGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGR 335

Query:   381 AGRDGL--QSYCRIYHSEHSK-KSLEYVIKTD 409
              GR     ++   +   EH   + +E ++K +
Sbjct:   336 TGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367


>UNIPROTKB|I3LLD5 [details] [associations]
            symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
            Uniprot:I3LLD5
        Length = 401

 Score = 121 (47.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 61/274 (22%), Positives = 118/274 (43%)

Query:   149 TENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG 208
             T  +A +++L++  P I  +  TP R     F  L +  +    +   V+DEA  +   G
Sbjct:   138 TNVRAEVQKLQMEAPHI--IVGTPGRV----FDMLNRRYLSPKYIKMFVLDEADEMLSRG 191

Query:   209 HDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK-FNK-PYKVFKTSTFRS 266
               F+    ++ ++ Q   ++  ++ L+AT  PS   D++ V K F + P ++  T     
Sbjct:   192 --FKD---QIYDIFQKLNSNTQVVLLSATM-PS---DVLEVTKKFMRDPIRIXLTLEGIR 242

Query:   267 NLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLA-DALRRKVN 325
               + +V  ++   D+   + E +              + +   + H  D    A+   ++
Sbjct:   243 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMD 302

Query:   326 KHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 385
             + ER  +   F  G   V+  T     GID Q V  V+++ +P++   Y    GR GR G
Sbjct:   303 QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFG 362

Query:   386 LQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLEL 419
              +       +E  K++L   I+T  +T  E++ L
Sbjct:   363 RKGVAINMVTEEDKRTLRD-IETFYNTSIEEMPL 395


>DICTYBASE|DDB_G0287361 [details] [associations]
            symbol:ddx41 "DEAD box protein abstrakt"
            species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
            GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
            EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
            IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
            KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
        Length = 671

 Score = 124 (48.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 67/290 (23%), Positives = 122/290 (42%)

Query:   156 EELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTY 215
             E+  + K  + ++  TP R +      L +  + +    Y+ +DEA  + + G  F    
Sbjct:   347 EQEHIFKKGVHMIIATPGRLLD----LLNKKKINFKLCKYLGLDEADRLIDLG--FEDDI 400

Query:   216 RRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFD 275
             R +  L  FT N    +  +AT    +++   S L       V +      N+  +V F 
Sbjct:   401 RSV--LDNFT-NQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEF- 456

Query:   276 DLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----VNKH---- 327
               +K   A +   +E CL K        +I+C  ++   D+ + L  K    V+ H    
Sbjct:   457 --VKPE-AKIVYLLE-CLQKTPPPV---LIFCENKKDVDDIYEYLLLKQVEAVSIHGDKS 509

Query:   328 --ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 385
               ER    ++F  G+ +V+ AT     G+D   ++ V+++ MP  I  Y    GR GR G
Sbjct:   510 QDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRG 569

Query:   386 LQSYCRIYHSEHSKKSL----EYV-IKTDTSTKREQLELKFKN-YLSMLE 429
              +     + ++++ +SL    +Y+ I+         LE+   N YL  L+
Sbjct:   570 NKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEIPDDNQYLQKLQ 619


>RGD|1310934 [details] [associations]
            symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005886
            "plasma membrane" evidence=ISO] InterPro:IPR001650
            InterPro:IPR012562 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 RGD:1310934 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            GO:GO:0004386 eggNOG:COG0513 EMBL:BC091427 IPI:IPI00764536
            UniGene:Rn.98470 SMR:Q5BJM0 Ensembl:ENSRNOT00000057582
            UCSC:RGD:1310934 HOGENOM:HOG000137600 NextBio:677841
            Genevestigator:Q5BJM0 Uniprot:Q5BJM0
        Length = 380

 Score = 120 (47.3 bits), Expect = 0.00024, P = 0.00024
 Identities = 29/111 (26%), Positives = 47/111 (42%)

Query:   304 IIYCRTREHTTDLA---------DALRRKVNKHERSRVQESFMRGEINVITATISFGMGI 354
             II+C T+++ T++A           L   + + +R    + F  G   V+ AT     G+
Sbjct:    36 IIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGL 95

Query:   355 DRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
             D   V  V+    P  + +Y   SGR GR G    C  ++    +  L YV
Sbjct:    96 DIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRYV 146


>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
            symbol:PF14_0655 "RNA helicase-1, putative"
            species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003743 "translation initiation factor activity"
            evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
            [GO:0006446 "regulation of translational initiation" evidence=ISS]
            [GO:0016281 "eukaryotic translation initiation factor 4F complex"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
            GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
            RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
            IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
            GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
            ProtClustDB:PTZ00424 Uniprot:Q8IKF0
        Length = 398

 Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
 Identities = 35/134 (26%), Positives = 62/134 (46%)

Query:   304 IIYCRTREHTTDLADALRRKV----------NKHERSRVQESFMRGEINVITATISFGMG 353
             IIYC TR+    L   +  ++          ++ +R  +   F  G   V+  T     G
Sbjct:   266 IIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARG 325

Query:   354 IDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCR--IYHSEHSKKSLEYVIKTDTS 411
             ID Q V  V+++ +P+S   Y    GR+GR G +      + + +  K  L+  I++  S
Sbjct:   326 IDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKK-IESYYS 384

Query:   412 TKREQLELKFKNYL 425
             T+ E++ L+  +YL
Sbjct:   385 TQIEEMPLEVADYL 398


>UNIPROTKB|Q8IKF0 [details] [associations]
            symbol:H45 "Helicase 45" species:36329 "Plasmodium
            falciparum 3D7" [GO:0006446 "regulation of translational
            initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
            GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
            RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
            IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
            GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
            ProtClustDB:PTZ00424 Uniprot:Q8IKF0
        Length = 398

 Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
 Identities = 35/134 (26%), Positives = 62/134 (46%)

Query:   304 IIYCRTREHTTDLADALRRKV----------NKHERSRVQESFMRGEINVITATISFGMG 353
             IIYC TR+    L   +  ++          ++ +R  +   F  G   V+  T     G
Sbjct:   266 IIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARG 325

Query:   354 IDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCR--IYHSEHSKKSLEYVIKTDTS 411
             ID Q V  V+++ +P+S   Y    GR+GR G +      + + +  K  L+  I++  S
Sbjct:   326 IDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKK-IESYYS 384

Query:   412 TKREQLELKFKNYL 425
             T+ E++ L+  +YL
Sbjct:   385 TQIEEMPLEVADYL 398


>UNIPROTKB|B7ZBU3 [details] [associations]
            symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
            HOVERGEN:HBG015893 EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
            IPI:IPI00916009 SMR:B7ZBU3 Ensembl:ENST00000433235
            HOGENOM:HOG000200515 Uniprot:B7ZBU3
        Length = 224

 Score = 115 (45.5 bits), Expect = 0.00027, P = 0.00027
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query:   328 ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ 387
             ER  + +  + G+  V+ +T   G G+D  +VR VV++ MPSS+  Y  + GR GR G  
Sbjct:   126 ERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQN 185

Query:   388 SYCRIYHSEHSKK 400
                  + + +SK+
Sbjct:   186 GTAITFINNNSKR 198


>TAIR|locus:2035741 [details] [associations]
            symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
            IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
            UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
            PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
            KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
            OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
            Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
        Length = 501

 Score = 121 (47.7 bits), Expect = 0.00029, P = 0.00029
 Identities = 60/241 (24%), Positives = 108/241 (44%)

Query:   157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYR 216
             ++R ++  ++++  TP R +      +  +     ++ Y+V+DEA  + + G D  P  R
Sbjct:   215 QVRDLQKGVEIVIATPGRLID----MMESNNTNLRRVTYLVLDEADRMLDMGFD--PQIR 268

Query:   217 RL-GELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVF-KTSTFRSNLFYDVIF 274
             ++   +R         +  +AT    V+Q +     +N PYKV   +S  ++N     I 
Sbjct:   269 KIVSHIRP----DRQTLYWSATWPKEVEQ-LSKKFLYN-PYKVIIGSSDLKANRAIRQIV 322

Query:   275 DDLLKDS-YAHVKEFIEKCL-GK------DNKANNCGIIYCRTREHTTDLADALRRKVNK 326
             D + +   Y  + + +E  + G       D K   C  I   TR+   D   AL    +K
Sbjct:   323 DVISESQKYNKLVKLLEDIMDGSRILVFLDTK-KGCDQI---TRQLRMDGWPALSIHGDK 378

Query:   327 H--ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384
                ER  V   F  G+  ++TAT     G+D ++V++V+++  P S+  Y    GR GR 
Sbjct:   379 SQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 438

Query:   385 G 385
             G
Sbjct:   439 G 439


>SGD|S000005056 [details] [associations]
            symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
            protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
            "nuclear polyadenylation-dependent mRNA catabolic process"
            evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
            ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
            "rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
            OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
            RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
            SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
            STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
            GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
            CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
            Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
        Length = 546

 Score = 121 (47.7 bits), Expect = 0.00033, P = 0.00033
 Identities = 56/223 (25%), Positives = 99/223 (44%)

Query:   192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK 251
             ++ Y+V+DEA  + + G  F P  R++ +  Q   +   ++  +AT    VKQ     L 
Sbjct:   260 RVTYLVLDEADRMLDMG--FEPQIRKIVD--QIRPDRQTLM-WSATWPKEVKQLAADYL- 313

Query:   252 FNKPYKVFKTSTFRS---NL--FYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIY 306
              N P +V   S   S   N+    +V+ D   +D    + +++E    +DN+     +I+
Sbjct:   314 -NDPIQVQVGSLELSASHNITQIVEVVSDFEKRD---RLNKYLETA-SQDNEYKT--LIF 366

Query:   307 CRTREHTTDLADALRRKV--------NKHERSR--VQESFMRGEINVITATISFGMGIDR 356
               T+    D+   LR           +K +R R  V + F  G   ++ AT     GID 
Sbjct:   367 ASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDV 426

Query:   357 QNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 399
             + + +V+++ MP +I  Y    GR GR G       + +E +K
Sbjct:   427 KGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNK 469


>UNIPROTKB|E1BW15 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
            "double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
            [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
            EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
            Uniprot:E1BW15
        Length = 693

 Score = 122 (48.0 bits), Expect = 0.00036, P = 0.00036
 Identities = 32/121 (26%), Positives = 51/121 (42%)

Query:   304 IIYCRTREHTTDLA---------DALRRKVNKHERSRVQESFMRGEINVITATISFGMGI 354
             I++C T++   +LA          +L   + + +R    + F  G   V+ AT     G+
Sbjct:   369 IVFCETKKDANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATNVAARGL 428

Query:   355 DRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV-IKTDTSTK 413
             D   V  VV    P  + +Y   SGR GR G    C  ++    +  L YV +K   + K
Sbjct:   429 DIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEENQLRYVEVKAGITFK 488

Query:   414 R 414
             R
Sbjct:   489 R 489


>UNIPROTKB|Q8EDC4 [details] [associations]
            symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
            GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
            Uniprot:Q8EDC4
        Length = 449

 Score = 119 (46.9 bits), Expect = 0.00041, P = 0.00041
 Identities = 68/295 (23%), Positives = 121/295 (41%)

Query:   114 ILSSFYLRFRDDKTSIVTGRSDL----Y-QLELIVSGQTKTENKAIL--------EELRL 160
             ++S+  L  RD +  I+    +L    Y QL L+V+    T+ KAI         ++ + 
Sbjct:    63 VISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVAN---TQYKAISVLGGENFNDQAKA 119

Query:   161 VKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE 220
             +      +  TP R       +L Q  +  N L  +++DEA  + + G  F P  + + E
Sbjct:   120 LAKEPHFIVATPGRIAD----HLEQKNLFLNGLELLILDEADRMLDLG--FAPQLKAINE 173

Query:   221 LRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKD 280
                        +  +AT + S   +I + L  N  +    T+          I+   L D
Sbjct:   174 AADHKRRQT--LMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIY---LCD 228

Query:   281 SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLAD----------ALRRKVNKHERS 330
                H +  + + L   ++++   II+  TR  T  LA           AL  ++ +  R+
Sbjct:   229 HLDHKEALLSRLLS--DESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARN 286

Query:   331 RVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 385
             ++ + F RG+  ++  T     G+D  NV  V+++ MP     Y    GR GR G
Sbjct:   287 QIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAG 341


>TIGR_CMR|SO_2838 [details] [associations]
            symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
            GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
            Uniprot:Q8EDC4
        Length = 449

 Score = 119 (46.9 bits), Expect = 0.00041, P = 0.00041
 Identities = 68/295 (23%), Positives = 121/295 (41%)

Query:   114 ILSSFYLRFRDDKTSIVTGRSDL----Y-QLELIVSGQTKTENKAIL--------EELRL 160
             ++S+  L  RD +  I+    +L    Y QL L+V+    T+ KAI         ++ + 
Sbjct:    63 VISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVAN---TQYKAISVLGGENFNDQAKA 119

Query:   161 VKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGE 220
             +      +  TP R       +L Q  +  N L  +++DEA  + + G  F P  + + E
Sbjct:   120 LAKEPHFIVATPGRIAD----HLEQKNLFLNGLELLILDEADRMLDLG--FAPQLKAINE 173

Query:   221 LRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKD 280
                        +  +AT + S   +I + L  N  +    T+          I+   L D
Sbjct:   174 AADHKRRQT--LMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIY---LCD 228

Query:   281 SYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLAD----------ALRRKVNKHERS 330
                H +  + + L   ++++   II+  TR  T  LA           AL  ++ +  R+
Sbjct:   229 HLDHKEALLSRLLS--DESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARN 286

Query:   331 RVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 385
             ++ + F RG+  ++  T     G+D  NV  V+++ MP     Y    GR GR G
Sbjct:   287 QIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAG 341


>TAIR|locus:2162022 [details] [associations]
            symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
            EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
            IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
            UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
            PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
            KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
            OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
            Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
        Length = 591

 Score = 120 (47.3 bits), Expect = 0.00048, P = 0.00048
 Identities = 58/261 (22%), Positives = 116/261 (44%)

Query:   157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYR 216
             ++R ++  ++++  TP R + +      QH     ++ Y+V+DEA  + + G  F P  R
Sbjct:   281 QIRDLRRGVEIVIATPGRLI-DMLE--CQH-TNLKRVTYLVLDEADRMLDMG--FEPQIR 334

Query:   217 RLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTST-FRSNLFYDVIFD 275
             ++  + Q   +   ++  +AT    V+      L+   PYK    ST  ++N   + + +
Sbjct:   335 KI--VSQIRPDRQTLL-WSATWPREVETLARQFLR--DPYKAIIGSTDLKANQSINQVIE 389

Query:   276 DL-LKDSYAHV----KEFIE--KCLGKDNKANNCGIIYCRTREHTTD--LADALRRKVNK 326
              +   + Y  +    K+ ++  K L        C  +   TR+   D   A A+     +
Sbjct:   390 IVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQV---TRQLRMDGWPALAIHGDKTQ 446

Query:   327 HERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL 386
              ER RV   F  G   ++TAT     G+D ++++ VV++  P+++  Y    GR GR G 
Sbjct:   447 SERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGA 506

Query:   387 QSYCRIYHSEHSKKSLEYVIK 407
             +     + +  + K    ++K
Sbjct:   507 KGMAFTFFTHDNAKFARELVK 527


>UNIPROTKB|E1BXX5 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
            RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
            Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
            NextBio:20826688 Uniprot:E1BXX5
        Length = 625

 Score = 122 (48.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
 Identities = 28/80 (35%), Positives = 45/80 (56%)

Query:   328 ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ 387
             ER+ + +  ++ +  VI +T   G G+D  NV+ VV++ MPSS+  Y  + GRAGR G  
Sbjct:   489 ERTAILQGLLQEKYEVIVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHS 548

Query:   388 SYCRIYHSEHSKKSLEYVIK 407
                  + + +SKK    V+K
Sbjct:   549 GTAITFINNNSKKLFWDVVK 568

 Score = 42 (19.8 bits), Expect = 0.00048, Sum P(2) = 0.00048
 Identities = 24/85 (28%), Positives = 34/85 (40%)

Query:   194 AYIVVDEAHCVSEWGHDF-RPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK- 251
             A I V   H  ++  H+F R T   +GE      N   II      EPS K+ +  +L  
Sbjct:   391 ATIPVGIEHLANQLLHNFVRIT---IGEKNLPCSNVRQIILWVE--EPSKKKKLFEILND 445

Query:   252 ---FNKPYKVFKTSTFRSNLFYDVI 273
                F  P  VF      ++L  D +
Sbjct:   446 KKLFKPPVLVFVDCKLGADLLSDAV 470


>UNIPROTKB|Q9KLH6 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 118 (46.6 bits), Expect = 0.00048, P = 0.00048
 Identities = 60/267 (22%), Positives = 114/267 (42%)

Query:   157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH--DFRPT 214
             +L  ++  + +L  TP R +    H  ++ L    K+  +V+DEA  + + G   D +  
Sbjct:   124 QLNHLRGGVDILIATPGRLLD---HAHVKSLF-LGKVEVLVLDEADRMLDMGFMPDLQRV 179

Query:   215 YRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIF 274
              RRL  LRQ        +  +AT +  +K     +++   P +V  T    SN   + + 
Sbjct:   180 LRRLSPLRQ-------TLFFSATFDSKIKAVAYRIMR--DPIEVQVTP---SNSTAETVQ 227

Query:   275 DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR------KVN--K 326
               +        +E +   +G  N      +++ +TR+ +  LA+ L+        +N  K
Sbjct:   228 QMVYPVDKKRKRELLSYLIGSKNWQQV--LVFTKTRQGSDALAEELKLDGIKAVSINGDK 285

Query:   327 HE--RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384
              +  R +  + F  G++  + AT     G+D   +  VV++ MP     Y    GR GR 
Sbjct:   286 SQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRA 345

Query:   385 GLQSYC--RIYHSEHSK-KSLEYVIKT 408
             GL       + H E  + +++E ++ T
Sbjct:   346 GLAGLAVSLLSHDEQPQLEAIERLLNT 372


>TIGR_CMR|VC_A0768 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 118 (46.6 bits), Expect = 0.00048, P = 0.00048
 Identities = 60/267 (22%), Positives = 114/267 (42%)

Query:   157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGH--DFRPT 214
             +L  ++  + +L  TP R +    H  ++ L    K+  +V+DEA  + + G   D +  
Sbjct:   124 QLNHLRGGVDILIATPGRLLD---HAHVKSLF-LGKVEVLVLDEADRMLDMGFMPDLQRV 179

Query:   215 YRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIF 274
              RRL  LRQ        +  +AT +  +K     +++   P +V  T    SN   + + 
Sbjct:   180 LRRLSPLRQ-------TLFFSATFDSKIKAVAYRIMR--DPIEVQVTP---SNSTAETVQ 227

Query:   275 DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR------KVN--K 326
               +        +E +   +G  N      +++ +TR+ +  LA+ L+        +N  K
Sbjct:   228 QMVYPVDKKRKRELLSYLIGSKNWQQV--LVFTKTRQGSDALAEELKLDGIKAVSINGDK 285

Query:   327 HE--RSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384
              +  R +  + F  G++  + AT     G+D   +  VV++ MP     Y    GR GR 
Sbjct:   286 SQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRA 345

Query:   385 GLQSYC--RIYHSEHSK-KSLEYVIKT 408
             GL       + H E  + +++E ++ T
Sbjct:   346 GLAGLAVSLLSHDEQPQLEAIERLLNT 372


>UNIPROTKB|Q5T1V6 [details] [associations]
            symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
            GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
            IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
            UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
            SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
            PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
            Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
            CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
            neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
            HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
            EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
            ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
            Genevestigator:Q5T1V6 Uniprot:Q5T1V6
        Length = 619

 Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
 Identities = 61/257 (23%), Positives = 118/257 (45%)

Query:   157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYR 216
             +L  ++  +K++  TP R +      + Q  V    +  +VVDEA  + + G  F+   +
Sbjct:   315 QLYRLQQHVKVIIATPGRLLD----IIKQSSVELCGVKIVVVDEADTMLKMG--FQ---Q 365

Query:   217 RLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDD 276
             ++ ++ +   N    I ++AT   S++Q + S L  N P ++    T   NL    +   
Sbjct:   366 QVLDILENIPNDCQTILVSATIPTSIEQ-LASQLLHN-PVRII---TGEKNLPCANVRQI 420

Query:   277 LL-KDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDL-ADALRR-----KVNKH-- 327
             +L  +  A  K+  E  +  D K     ++     +   DL ++A+++      ++ H  
Sbjct:   421 ILWVEDPAKKKKLFE--ILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSE 478

Query:   328 ----ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 383
                 ER  + +  + G+  V+ +T   G G+D  +VR VV++ MPSS+  Y  + GR GR
Sbjct:   479 KSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGR 538

Query:   384 DGLQSYCRIYHSEHSKK 400
              G       + + +SK+
Sbjct:   539 LGQNGTAITFINNNSKR 555


>UNIPROTKB|B4DXX7 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
            UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
            IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
            UCSC:uc011nar.1 Uniprot:B4DXX7
        Length = 657

 Score = 120 (47.3 bits), Expect = 0.00055, P = 0.00055
 Identities = 62/275 (22%), Positives = 117/275 (42%)

Query:   156 EELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTY 215
             +++R ++    LL  TP R V      + +  +  +   Y+V+DEA  + + G  F P  
Sbjct:   303 QQIRDLERGCHLLVATPGRLVD----MMERGKIGLDFCKYLVLDEADRMLDMG--FEPQI 356

Query:   216 RRLGELRQFTGNSIP-IIALTATAEPSVK---QDIISVLKFNKPYKVFKTSTFRSNLFYD 271
             RR+ E        +   +  +AT    ++   +D +    F    +V  TS    N+   
Sbjct:   357 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTS---ENITQK 413

Query:   272 VIF-DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKV------ 324
             V++ +DL K S      F+   LG    +++  +++  T++    L D L  +       
Sbjct:   414 VVWVEDLDKRS------FLLDILGATG-SDSLTLVFVETKKGADSLEDFLYHEGYACTSI 466

Query:   325 --NKHERSRVQ--ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380
               ++ +R R +    F  G+  ++ AT     G+D  NVR V+++ +PS I  Y    GR
Sbjct:   467 HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 526

Query:   381 AGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKRE 415
              GR G       + +E +    + ++      K+E
Sbjct:   527 TGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQE 561


>UNIPROTKB|O15523 [details] [associations]
            symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
            HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
            HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
            EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
            RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
            SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
            PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
            Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
            KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
            HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
            InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
            NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
            Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
        Length = 660

 Score = 120 (47.3 bits), Expect = 0.00056, P = 0.00056
 Identities = 62/275 (22%), Positives = 117/275 (42%)

Query:   156 EELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTY 215
             +++R ++    LL  TP R V      + +  +  +   Y+V+DEA  + + G  F P  
Sbjct:   306 QQIRDLERGCHLLVATPGRLVD----MMERGKIGLDFCKYLVLDEADRMLDMG--FEPQI 359

Query:   216 RRLGELRQFTGNSIP-IIALTATAEPSVK---QDIISVLKFNKPYKVFKTSTFRSNLFYD 271
             RR+ E        +   +  +AT    ++   +D +    F    +V  TS    N+   
Sbjct:   360 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTS---ENITQK 416

Query:   272 VIF-DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKV------ 324
             V++ +DL K S      F+   LG    +++  +++  T++    L D L  +       
Sbjct:   417 VVWVEDLDKRS------FLLDILGATG-SDSLTLVFVETKKGADSLEDFLYHEGYACTSI 469

Query:   325 --NKHERSRVQ--ESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380
               ++ +R R +    F  G+  ++ AT     G+D  NVR V+++ +PS I  Y    GR
Sbjct:   470 HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 529

Query:   381 AGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKRE 415
              GR G       + +E +    + ++      K+E
Sbjct:   530 TGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQE 564


>UNIPROTKB|B4E132 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
            HOGENOM:HOG000268804 HOVERGEN:HBG015893 UniGene:Hs.99120
            HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK303638 IPI:IPI00908506
            ProteinModelPortal:B4E132 SMR:B4E132 STRING:B4E132
            Ensembl:ENST00000420730 Uniprot:B4E132
        Length = 407

 Score = 117 (46.2 bits), Expect = 0.00059, P = 0.00059
 Identities = 55/236 (23%), Positives = 101/236 (42%)

Query:   195 YIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIP-IIALTATAEPSVK---QDIISVL 250
             Y+V+DEA  + + G  F P  RR+ E        +   +  +AT    ++   +D +   
Sbjct:    88 YLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEY 145

Query:   251 KFNKPYKVFKTSTFRSNLFYDVIF-DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRT 309
              F    +V  TS    N+   V++ +DL K S      F+   LG    +++  +++  T
Sbjct:   146 IFLAVGRVGSTS---ENITQKVVWVEDLDKRS------FLLDILGATG-SDSLTLVFVET 195

Query:   310 REHTTDLADALRRKV--------NKHERSRVQ--ESFMRGEINVITATISFGMGIDRQNV 359
             ++    L D L  +         ++ +R R +    F  G+  ++ AT     G+D  NV
Sbjct:   196 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 255

Query:   360 RFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKRE 415
             R V+++ +PS I  Y    GR GR G       + +E +    + ++      K+E
Sbjct:   256 RHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQE 311


>UNIPROTKB|E2RPT4 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
            EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
        Length = 687

 Score = 120 (47.3 bits), Expect = 0.00059, P = 0.00059
 Identities = 29/111 (26%), Positives = 47/111 (42%)

Query:   304 IIYCRTREHTTDLA---------DALRRKVNKHERSRVQESFMRGEINVITATISFGMGI 354
             II+C T+++ T++A           L   + + +R    + F  G   V+ AT     G+
Sbjct:   395 IIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGL 454

Query:   355 DRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
             D   V  V+    P  + +Y   SGR GR G    C  ++    +  L YV
Sbjct:   455 DIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYV 505


>MGI|MGI:2182303 [details] [associations]
            symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
            OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
            UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
            PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
            Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
            UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
            CleanEx:MM_DDX50 Genevestigator:Q99MJ9
            GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
        Length = 734

 Score = 120 (47.3 bits), Expect = 0.00064, P = 0.00064
 Identities = 29/111 (26%), Positives = 47/111 (42%)

Query:   304 IIYCRTREHTTDLA---------DALRRKVNKHERSRVQESFMRGEINVITATISFGMGI 354
             II+C T+++ T++A           L   + + +R    + F  G   V+ AT     G+
Sbjct:   390 IIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGL 449

Query:   355 DRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
             D   V  V+    P  + +Y   SGR GR G    C  ++    +  L YV
Sbjct:   450 DIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRYV 500


>UNIPROTKB|F1MMK3 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
            OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
            UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
            GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
            Uniprot:F1MMK3
        Length = 737

 Score = 120 (47.3 bits), Expect = 0.00064, P = 0.00064
 Identities = 29/111 (26%), Positives = 47/111 (42%)

Query:   304 IIYCRTREHTTDLA---------DALRRKVNKHERSRVQESFMRGEINVITATISFGMGI 354
             II+C T+++ T++A           L   + + +R    + F  G   V+ AT     G+
Sbjct:   393 IIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGL 452

Query:   355 DRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
             D   V  V+    P  + +Y   SGR GR G    C  ++    +  L YV
Sbjct:   453 DIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYV 503


>UNIPROTKB|Q9BQ39 [details] [associations]
            symbol:DDX50 "ATP-dependent RNA helicase DDX50"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
            EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
            EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
            UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
            SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
            DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
            PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
            KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
            HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
            PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
            PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
            GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
            CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
        Length = 737

 Score = 120 (47.3 bits), Expect = 0.00064, P = 0.00064
 Identities = 29/111 (26%), Positives = 47/111 (42%)

Query:   304 IIYCRTREHTTDLA---------DALRRKVNKHERSRVQESFMRGEINVITATISFGMGI 354
             II+C T+++ T++A           L   + + +R    + F  G   V+ AT     G+
Sbjct:   393 IIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGL 452

Query:   355 DRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
             D   V  V+    P  + +Y   SGR GR G    C  ++    +  L YV
Sbjct:   453 DIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYV 503


>UNIPROTKB|F1SUG8 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
            EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
        Length = 737

 Score = 120 (47.3 bits), Expect = 0.00064, P = 0.00064
 Identities = 29/111 (26%), Positives = 47/111 (42%)

Query:   304 IIYCRTREHTTDLA---------DALRRKVNKHERSRVQESFMRGEINVITATISFGMGI 354
             II+C T+++ T++A           L   + + +R    + F  G   V+ AT     G+
Sbjct:   393 IIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGL 452

Query:   355 DRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
             D   V  V+    P  + +Y   SGR GR G    C  ++    +  L YV
Sbjct:   453 DIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYV 503


>UNIPROTKB|E2QTT0 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
            Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
        Length = 738

 Score = 120 (47.3 bits), Expect = 0.00065, P = 0.00065
 Identities = 29/111 (26%), Positives = 47/111 (42%)

Query:   304 IIYCRTREHTTDLA---------DALRRKVNKHERSRVQESFMRGEINVITATISFGMGI 354
             II+C T+++ T++A           L   + + +R    + F  G   V+ AT     G+
Sbjct:   394 IIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGL 453

Query:   355 DRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
             D   V  V+    P  + +Y   SGR GR G    C  ++    +  L YV
Sbjct:   454 DIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYV 504


>ZFIN|ZDB-GENE-031113-10 [details] [associations]
            symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
            ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
            OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
            RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
            STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
            Uniprot:B1H1J4
        Length = 759

 Score = 120 (47.3 bits), Expect = 0.00067, P = 0.00067
 Identities = 28/111 (25%), Positives = 49/111 (44%)

Query:   304 IIYCRTREHTTDL---------ADALRRKVNKHERSRVQESFMRGEINVITATISFGMGI 354
             I++C T++  T+L         A +L   + + +R    + F  G   V+ AT     G+
Sbjct:   422 IVFCETKKEATELSLNTSIKQSAQSLHGDIPQKQREVTLKGFRNGSFEVLVATNVAARGL 481

Query:   355 DRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
             D   V  V+    P+ + +Y   SGR GR G    C  ++    +  L++V
Sbjct:   482 DIPEVDLVIQSSPPNDVESYIHRSGRTGRAGRTGICICFYQRKEESQLKFV 532


>DICTYBASE|DDB_G0293168 [details] [associations]
            symbol:ddx17 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
            activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
            RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
            PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
            KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
        Length = 785

 Score = 120 (47.3 bits), Expect = 0.00070, P = 0.00070
 Identities = 62/281 (22%), Positives = 124/281 (44%)

Query:   157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYR 216
             ++  +K  ++++  TP R +      L        ++ Y+V+DEA  + + G  F P  R
Sbjct:   500 QVAALKKGVEIVIATPGRLID----ILESGKTNLRRVTYLVLDEADRMLDMG--FEPQIR 553

Query:   217 RLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTS-TFRSNLFYDV-IF 274
             ++  + Q   +   ++  +AT    V+      L  +    +  T  T   N+   V + 
Sbjct:   554 KI--ISQIRPDRQTLM-FSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVC 610

Query:   275 DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALR----RKVNKH--- 327
              D  K     +  F+   +G+D K     I++  TR+   DL   L+    + +  H   
Sbjct:   611 QDFEKKE--RMLSFLGS-VGRDEKV----IVFAETRKGVDDLQRVLQFSGFKSIGIHGNK 663

Query:   328 ---ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384
                ER  V   F  G + ++ AT     G+D +++++VV++  P++I  Y    GR  R 
Sbjct:   664 SQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARA 723

Query:   385 GLQ--SYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKN 423
             G    SY  +  +++++ + E +IK  T  K +++ ++  N
Sbjct:   724 GASGVSYS-LLTTDNARLANE-LIKVLTEAK-QKIPIELSN 761


>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
            symbol:PFE0430w "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
            RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
            MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
            KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
            HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
        Length = 1490

 Score = 123 (48.4 bits), Expect = 0.00070, P = 0.00070
 Identities = 58/255 (22%), Positives = 117/255 (45%)

Query:   154 ILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRP 213
             I  +L+++K  +++L  TP R + +        +   N+++++V+DEA  + + G + + 
Sbjct:   836 IARQLKVLKKGVEILVGTPGRII-DILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQ- 893

Query:   214 TYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVF--KTSTFRSNLFYD 271
              Y  L   R+    ++    ++AT  P+  Q++   L + KP ++   +     +N++  
Sbjct:   894 IYNILRNCRKDKQTAM----ISATF-PNYIQNMAKKLLY-KPIEIIVGEKGKTNNNIYQF 947

Query:   272 VIFDDLLKDSYAHVK---EFIEKCLGKD--NKANNCGIIYCRTREHTTDLADALRRKVNK 326
             V   +  K  +  +K   E+I+  L     NK     ++Y    ++  +L   L    ++
Sbjct:   948 VEIIEESKKVFRLLKLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLL-VLHGGQDQ 1006

Query:   327 HERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL 386
              +R    E F + E  V+ AT     GID +N+  V+++  P  I  Y    GR GR   
Sbjct:  1007 TDRQFTLEKFKKEENKVLIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNN 1066

Query:   387 --QSYCRIYHSEHSK 399
                +Y  I  +E++K
Sbjct:  1067 IGYAYTFILPNEYTK 1081


>UNIPROTKB|Q8I416 [details] [associations]
            symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
            RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
            MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
            KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
            HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
        Length = 1490

 Score = 123 (48.4 bits), Expect = 0.00070, P = 0.00070
 Identities = 58/255 (22%), Positives = 117/255 (45%)

Query:   154 ILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRP 213
             I  +L+++K  +++L  TP R + +        +   N+++++V+DEA  + + G + + 
Sbjct:   836 IARQLKVLKKGVEILVGTPGRII-DILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQ- 893

Query:   214 TYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVF--KTSTFRSNLFYD 271
              Y  L   R+    ++    ++AT  P+  Q++   L + KP ++   +     +N++  
Sbjct:   894 IYNILRNCRKDKQTAM----ISATF-PNYIQNMAKKLLY-KPIEIIVGEKGKTNNNIYQF 947

Query:   272 VIFDDLLKDSYAHVK---EFIEKCLGKD--NKANNCGIIYCRTREHTTDLADALRRKVNK 326
             V   +  K  +  +K   E+I+  L     NK     ++Y    ++  +L   L    ++
Sbjct:   948 VEIIEESKKVFRLLKLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLL-VLHGGQDQ 1006

Query:   327 HERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL 386
              +R    E F + E  V+ AT     GID +N+  V+++  P  I  Y    GR GR   
Sbjct:  1007 TDRQFTLEKFKKEENKVLIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNN 1066

Query:   387 --QSYCRIYHSEHSK 399
                +Y  I  +E++K
Sbjct:  1067 IGYAYTFILPNEYTK 1081


>CGD|CAL0004832 [details] [associations]
            symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
            evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
            [GO:0071470 "cellular response to osmotic stress" evidence=IEA]
            [GO:0031137 "regulation of conjugation with cellular fusion"
            evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
            evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
            ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
            KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
        Length = 672

 Score = 119 (46.9 bits), Expect = 0.00073, P = 0.00073
 Identities = 58/271 (21%), Positives = 109/271 (40%)

Query:   156 EELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTY 215
             +++R +     LL  TP R        L +  V    + Y+V+DEA  + + G  F P  
Sbjct:   311 QQMRNMDRGCDLLVATPGRLKD----LLDRGKVSLANIRYLVLDEADRMLDMG--FEPQI 364

Query:   216 RRLGELRQFTG-NSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIF 274
             R + E            +  +AT    ++      LK      V +  +   N+   +++
Sbjct:   365 RYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILY 424

Query:   275 DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLAD----------ALRRKV 324
                ++D     K  I   L  +   N   I++  T+    +LAD          A+    
Sbjct:   425 ---VEDD--EKKSVILDLLSANE--NGLTIVFTETKRMADNLADYLYDQGFPATAIHGDR 477

Query:   325 NKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 384
             +++ER +   +F  G   ++ AT     G+D  NV  V+++ +PS I  Y    GR GR 
Sbjct:   478 SQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRA 537

Query:   385 GLQSYCRIYHSEHSKKSLEYVIKTDTSTKRE 415
             G       + + ++K  ++ +I+  +   +E
Sbjct:   538 GNVGIATAFFNRNNKNVVKGLIELLSEANQE 568


>WB|WBGene00010260 [details] [associations]
            symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
            RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
            STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
            EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
            EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
            KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
            WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
            ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
        Length = 561

 Score = 118 (46.6 bits), Expect = 0.00074, P = 0.00074
 Identities = 62/278 (22%), Positives = 118/278 (42%)

Query:   165 IKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRL-GELRQ 223
             + ++  TP R +     +L        K +Y+V+DEA  + + G  F P  +++ G++R 
Sbjct:   253 VDIVVATPGRLLD----FLDNGTTNMKKCSYLVLDEADRMLDMG--FEPQIKKIIGQIRP 306

Query:   224 FTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVI-FDDLLKDSY 282
                     +  +AT    V+  + S   F K        +      +++    D+L++  
Sbjct:   307 ----DRQTLMFSATWPKEVRA-LAS--DFQKDAAFLNVGSLELAANHNITQVVDILEE-- 357

Query:   283 AHVKEF-IEKCLGKDNKANNCG-IIYCRTREHTTDLADALRRK----------VNKHERS 330
              H K+  + + L        C  II+  T+    +L  A+RR            N+ ER 
Sbjct:   358 -HAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERD 416

Query:   331 RVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ--S 388
              V + F  G+  ++ AT     G+D  +++FV+++  P++   Y    GR GR   +  +
Sbjct:   417 WVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTA 476

Query:   389 YCRIYHSEHSK-KSLEYVIKTDTSTKREQL-ELKFKNY 424
             Y    H+  SK K L  V+     T  + L ++  ++Y
Sbjct:   477 YTFFTHTNASKAKDLLKVLDEAKQTVPQALRDMANRSY 514


>UNIPROTKB|Q9NZE6 [details] [associations]
            symbol:EIF4A2 "BM-010" species:9606 "Homo sapiens"
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CH471052 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
            HOVERGEN:HBG107989 HSSP:P10081 EMBL:AC112907 UniGene:Hs.518475
            UniGene:Hs.599481 HGNC:HGNC:3284 ChiTaRS:EIF4A2 EMBL:AF208852
            IPI:IPI00030296 SMR:Q9NZE6 STRING:Q9NZE6 Ensembl:ENST00000356531
            UCSC:uc003fqv.3 Uniprot:Q9NZE6
        Length = 312

 Score = 114 (45.2 bits), Expect = 0.00079, P = 0.00078
 Identities = 65/283 (22%), Positives = 118/283 (41%)

Query:   145 GQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204
             G T   N+  +++L+   P I  +  TP R     F  L +  +    +   V+DEA  +
Sbjct:    42 GGTNVRNE--MQKLQAEAPHI--VVGTPGRV----FDMLNRRYLSPKWIKMFVLDEADEM 93

Query:   205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK--FNKPYKVF--K 260
                G  F+    ++ E+ Q    SI ++ L+AT  P+   D++ V K     P ++   K
Sbjct:    94 LSRG--FKD---QIYEIFQKLNTSIQVVLLSATM-PT---DVLEVTKKFMRDPIRILVKK 144

Query:   261 TSTFRSNL--FY-DVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLA 317
                    +  FY +V  ++   D+   + E +              + +   + H  D  
Sbjct:   145 EELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFT 204

Query:   318 -DALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQ 376
               AL   +++ ER  +   F  G   V+  T     GID Q V  V+++ +P++   Y  
Sbjct:   205 VSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 264

Query:   377 ESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLEL 419
               GR GR G +     + +E  K+ L   I+T  +T  E++ +
Sbjct:   265 RIGRGGRFGRKGVAINFVTEEDKRILRD-IETFYNTTVEEMPM 306


>UNIPROTKB|F1LP27 [details] [associations]
            symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            IPI:IPI00949972 Ensembl:ENSRNOT00000066369 ArrayExpress:F1LP27
            Uniprot:F1LP27
        Length = 312

 Score = 114 (45.2 bits), Expect = 0.00079, P = 0.00078
 Identities = 65/283 (22%), Positives = 118/283 (41%)

Query:   145 GQTKTENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCV 204
             G T   N+  +++L+   P I  +  TP R     F  L +  +    +   V+DEA  +
Sbjct:    42 GGTNVRNE--MQKLQAEAPHI--VVGTPGRV----FDMLNRRYLSPKWIKMFVLDEADEM 93

Query:   205 SEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK--FNKPYKVF--K 260
                G  F+    ++ E+ Q    SI ++ L+AT  P+   D++ V K     P ++   K
Sbjct:    94 LSRG--FKD---QIYEIFQKLNTSIQVVLLSATM-PT---DVLEVTKKFMRDPIRILVKK 144

Query:   261 TSTFRSNL--FY-DVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLA 317
                    +  FY +V  ++   D+   + E +              + +   + H  D  
Sbjct:   145 EELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFT 204

Query:   318 -DALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQ 376
               AL   +++ ER  +   F  G   V+  T     GID Q V  V+++ +P++   Y  
Sbjct:   205 VSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 264

Query:   377 ESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLEL 419
               GR GR G +     + +E  K+ L   I+T  +T  E++ +
Sbjct:   265 RIGRGGRFGRKGVAINFVTEEDKRILRD-IETFYNTTVEEMPM 306


>RGD|1359520 [details] [associations]
            symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 RGD:1359520 GO:GO:0005524
            GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
            HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
            IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
            UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
            SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
            Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
            UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
            Genevestigator:Q66HG7 Uniprot:Q66HG7
        Length = 589

 Score = 118 (46.6 bits), Expect = 0.00079, P = 0.00079
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query:   328 ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ 387
             ER  + +  + G+  V+ +T   G G+D  NV+ VV++ MPSS+  Y  + GR GR G  
Sbjct:   453 ERREILKGLLEGDYEVVVSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQN 512

Query:   388 SYCRIYHSEHSKK 400
                  + + +SK+
Sbjct:   513 GTAITFINNNSKR 525


>UNIPROTKB|Q66HG7 [details] [associations]
            symbol:Ddx59 "Probable ATP-dependent RNA helicase DDX59"
            species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1359520
            GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
            PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
            HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
            IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
            UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
            SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
            Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
            UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
            Genevestigator:Q66HG7 Uniprot:Q66HG7
        Length = 589

 Score = 118 (46.6 bits), Expect = 0.00079, P = 0.00079
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query:   328 ERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ 387
             ER  + +  + G+  V+ +T   G G+D  NV+ VV++ MPSS+  Y  + GR GR G  
Sbjct:   453 ERREILKGLLEGDYEVVVSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQN 512

Query:   388 SYCRIYHSEHSKK 400
                  + + +SK+
Sbjct:   513 GTAITFINNNSKR 525


>UNIPROTKB|I3LV06 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
            Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
            Uniprot:I3LV06
        Length = 607

 Score = 118 (46.6 bits), Expect = 0.00083, P = 0.00083
 Identities = 27/91 (29%), Positives = 50/91 (54%)

Query:   311 EHTTDL-ADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPS 369
             E  T L + ++  + ++ ER  + E  + G+ +V+ +T   G G+D  +V+ VV++ MPS
Sbjct:   453 EKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLDLISVKLVVNFDMPS 512

Query:   370 SIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 400
             S+  Y  + GR GR G       + + +SK+
Sbjct:   513 SMDEYVHQVGRVGRLGQNGTAITFINNNSKR 543


>UNIPROTKB|C9JMU5 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
            HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
            STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
            ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
        Length = 652

 Score = 118 (46.6 bits), Expect = 0.00091, P = 0.00091
 Identities = 58/267 (21%), Positives = 114/267 (42%)

Query:   157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYR 216
             ++R ++  +++   TP R +     +L        +  Y+V+DEA  + + G  F P  R
Sbjct:   208 QIRDLERGVEICIATPGRLID----FLESGKTNLRRCTYLVLDEADRMLDMG--FEPQIR 261

Query:   217 RLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDV--IF 274
             ++ +  Q   +   ++  +AT    V+Q       F + Y          +  +++  I 
Sbjct:   262 KIVD--QIRPDRQTLM-WSATWPKEVRQ---LAEDFLRDYTQINVGNLELSANHNILQIV 315

Query:   275 DDLLKDSYAH-VKEFIEKCLG-KDNKANNCGIIYCRTREHTTDLADALRRK--------- 323
             D  ++    H + + +E+ +  K+NK     II+  T+    DL   +RR          
Sbjct:   316 DVCMESEKDHKLIQLMEEIMAEKENKT----IIFVETKRRCDDLTRRMRRDGWPAMCIHG 371

Query:   324 -VNKHERSRVQESFMRGEINVITAT--ISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 380
               ++ ER  V   F  G+  ++ AT   S G+G D ++V+FV+++  P+S   Y    GR
Sbjct:   372 DKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGR 431

Query:   381 AGRDGLQSYCRIYHSEHSKKSLEYVIK 407
               R   +     + +  + K    +IK
Sbjct:   432 TARSTNKGTAYTFFTPGNLKQARELIK 458


>UNIPROTKB|Q4K8U0 [details] [associations]
            symbol:deaD "Cold-shock DEAD box protein A" species:220664
            "Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
            evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
            GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
            OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
            GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
            ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
            Uniprot:Q4K8U0
        Length = 557

 Score = 117 (46.2 bits), Expect = 0.00094, P = 0.00094
 Identities = 70/280 (25%), Positives = 121/280 (43%)

Query:   157 ELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNK-LA---YIVVDEAHCVSEWGH--D 210
             +L+ ++   +++  TP R        L  HL R  K LA   ++V+DEA  + + G   D
Sbjct:   118 QLKAIRNGAQIVVATPGR--------LCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDD 169

Query:   211 FRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKV-FKTSTFRSNLF 269
                 ++ + E RQ        +  +AT   S++      LK  K  K+  KT T  +   
Sbjct:   170 LEVIFKAMPETRQ-------TVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQ 222

Query:   270 YDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK------ 323
               ++     K S   V   +E    +D  A    I++ RT++ T DLA AL  K      
Sbjct:   223 AHLLVHADQKTSA--VLSLLEV---EDFDAL---IMFVRTKQATLDLASALEAKGYKAAA 274

Query:   324 ----VNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESG 379
                 + +++R RV +S   G ++++ AT     G+D   +  V +  MP    +Y    G
Sbjct:   275 LNGDIAQNQRERVIDSLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIG 334

Query:   380 RAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLEL 419
             R GR G +    +  +   ++ L+ VI+  T  K  ++ L
Sbjct:   335 RTGRAGREGRALLLVTPRERRMLQ-VIERVTGQKVAEVRL 373


>CGD|CAL0003204 [details] [associations]
            symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
            EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
            ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
            GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
            Uniprot:Q59LU0
        Length = 562

 Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00095
 Identities = 59/224 (26%), Positives = 102/224 (45%)

Query:   192 KLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLK 251
             ++ Y+V+DEA  + + G  F P  R++ +  Q   +   ++  +AT    V+Q     L 
Sbjct:   274 RVTYLVLDEADRMLDMG--FEPQIRKIVD--QIRPDRQTLM-WSATWPKEVQQLTRDYL- 327

Query:   252 FNKPYKVFKTST--FRSNLFYDVI--FDDLLKDSYAHVKEFIEKCLG-KDNKANNCGIIY 306
              N P +V   S     S+    ++   D+  K     VK  +E  L  KDNK     +++
Sbjct:   328 -NDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRL-VKH-LESALNEKDNKI----LVF 380

Query:   307 CRTR----EHTTDL-AD-----ALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDR 356
               T+    E TT L +D     A+     ++ER  V + F +G+ +++ AT     GID 
Sbjct:   381 ASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDV 440

Query:   357 QNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 400
             + +  V+++ MP +I  Y    GR GR G       + +E + K
Sbjct:   441 KGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSK 484


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      444       427   0.00085  118 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  162
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  262 KB (2140 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:08
  No. of threads or processors used:  24
  Search cpu time:  34.69u 0.09s 34.78t   Elapsed:  00:00:13
  Total cpu time:  34.73u 0.09s 34.82t   Elapsed:  00:00:21
  Start:  Thu Aug 15 13:27:10 2013   End:  Thu Aug 15 13:27:31 2013
WARNINGS ISSUED:  1
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 RecQ protein-like 5	protein from Homo sapiens	2.0e-72
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	4.1e-72
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	4.1e-72
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Bos taurus	2.9e-71
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Sus scrofa	6.1e-71
BLAST match view associations BLAST with Recql5 Recql5 Recql5 RecQ protein-like 5	gene from Rattus norvegicus	6.1e-71
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Canis lupus familiaris	3.3e-69
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 Uncharacterized protein	protein from Gallus gallus	5.4e-67
BLAST match view associations BLAST with RecQ5 RecQ5 RecQ5 homolog of RecQ	protein from Drosophila melanogaster	1.6e-55
BLAST match view associations BLAST with rcq-5 rcq-5 rcq-5	gene from Caenorhabditis elegans	3.9e-54
BLAST match view associations BLAST with RecQl3 RecQl3 RecQl3 AT4G35740	protein from Arabidopsis thaliana	6.5e-51
BLAST match view associations BLAST with him-6 him-6 him-6	gene from Caenorhabditis elegans	5.9e-50
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Bos taurus	1.5e-48
BLAST match view associations BLAST with blm blm blm Bloom syndrome protein homolog	protein from Xenopus laevis	1.9e-48
BLAST match view associations BLAST with RECQI1 RECQI1 RECQI1 RECQ helicase l1	protein from Arabidopsis thaliana	2.0e-47
BLAST match view associations BLAST with CBU_0472 CBU_0472 CBU_0472 ATP-dependent DNA helicase RecQ	protein from Coxiella burnetii RSA 493	5.4e-47
BLAST match view associations BLAST with GSU_0898 GSU_0898 GSU_0898 ATP-dependent DNA helicase RecQ	protein from Geobacter sulfurreducens PCA	8.6e-47
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Canis lupus familiaris	1.3e-46
BLAST match view associations BLAST with RECQ4A RECQ4A RECQ4A	protein from Arabidopsis thaliana	1.3e-46
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Canis lupus familiaris	1.3e-46
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein	protein from Homo sapiens	1.8e-46
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein	protein from Homo sapiens	2.2e-46
BLAST match view associations BLAST with DDB_G0272384 DDB_G0272384 DDB_G0272384 Bloom syndrome-like protein	gene from Dictyostelium discoideum	2.5e-46
BLAST match view associations BLAST with blm blm blm Bloom syndrome protein	gene from Dictyostelium discoideum	3.0e-46
BLAST match view associations BLAST with VC_0196 VC_0196 VC_0196 ATP-dependent DNA helicase RecQ	protein from Vibrio cholerae O1 biovar El Tor str. N16961	4.7e-46
BLAST match view associations BLAST with VC_0196 VC_0196 VC_0196 ATP-dependent DNA helicase RecQ	protein from Vibrio cholerae O1 biovar El Tor	4.7e-46
BLAST match view associations BLAST with blm blm blm Bloom syndrome	gene_product from Danio rerio	1.6e-45
BLAST match view associations BLAST with Blm Blm Blm Bloom syndrome, RecQ helicase-like	protein from Mus musculus	4.1e-45
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein homolog	protein from Gallus gallus	6.6e-44
BLAST match view associations BLAST with SGS1 SGS1 SGS1	gene_product from Candida albicans	6.0e-43
BLAST match view associations BLAST with SGS1 SGS1 SGS1 Putative uncharacterized protein SGS1	protein from Candida albicans SC5314	6.0e-43
BLAST match view associations BLAST with SGS1 SGS1 SGS1 Nucleolar DNA helicase of the RecQ family	gene from Saccharomyces cerevisiae	9.4e-43
BLAST match view associations BLAST with SO_4241 SO_4241 SO_4241 ATP-dependent DNA helicase RecQ	protein from Shewanella oneidensis MR-1	1.2e-42
BLAST match view associations BLAST with BLM BLM BLM Bloom syndrome protein homolog	protein from Gallus gallus	1.3e-42
BLAST match view associations BLAST with Blm Blm Blm Bloom syndrome helicase ortholog	protein from Drosophila melanogaster	1.3e-42
BLAST match view associations BLAST with Blm Blm Blm Bloom syndrome, RecQ helicase-like	gene from Rattus norvegicus	1.9e-42
BLAST match view associations BLAST with recQ recQ recQ	protein from Escherichia coli K-12	4.0e-42
BLAST match view associations BLAST with F1RX70 F1RX70 F1RX70 Uncharacterized protein	protein from Sus scrofa	1.7e-41
BLAST match view associations BLAST with I3LC91 I3LC91 I3LC91 Uncharacterized protein	protein from Sus scrofa	2.1e-41
BLAST match view associations BLAST with BA_2818 BA_2818 BA_2818 ATP-dependent DNA helicase RecQ	protein from Bacillus anthracis str. Ames	3.4e-40
BLAST match view associations BLAST with wrn wrn wrn Werner syndrome ATP-dependent helicase homolog	protein from Xenopus laevis	4.3e-40
BLAST match view associations BLAST with wrn-1 wrn-1 wrn-1	gene from Caenorhabditis elegans	1.1e-39
BLAST match view associations BLAST with recQ recQ recQ Probable ATP-dependent DNA helicase RecQ	protein from Bacillus subtilis subsp. subtilis str. 168	1.8e-39
BLAST match view associations BLAST with wrn wrn wrn Werner syndrome protein	gene from Dictyostelium discoideum	2.0e-39
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Bos taurus	2.0e-38
BLAST match view associations BLAST with WRN WRN WRN Werner syndrome ATP-dependent helicase	protein from Homo sapiens	2.1e-38
BLAST match view associations BLAST with RECQL2 RECQL2 RECQL2 RECQ helicase L2	protein from Arabidopsis thaliana	2.6e-38
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	3.4e-38
BLAST match view associations BLAST with K02F3.12 K02F3.12 K02F3.12	gene from Caenorhabditis elegans	5.9e-38
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Canis lupus familiaris	8.6e-38
BLAST match view associations BLAST with Wrn Wrn Wrn Werner syndrome homolog (human)	protein from Mus musculus	1.1e-37
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Gallus gallus	1.3e-37
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Canis lupus familiaris	1.3e-37
BLAST match view associations BLAST with WRN WRN WRN Uncharacterized protein	protein from Canis lupus familiaris	1.4e-37
BLAST match view associations BLAST with Recql Recql Recql RecQ protein-like	protein from Mus musculus	3.7e-37
BLAST match view associations BLAST with CPS_4237 CPS_4237 CPS_4237 RecQ domain protein	protein from Colwellia psychrerythraea 34H	5.4e-37
BLAST match view associations BLAST with CPS_4237 CPS_4237 CPS_4237 RecQ domain protein	protein from Colwellia psychrerythraea 34H	5.4e-37
BLAST match view associations BLAST with SPO_0107 SPO_0107 SPO_0107 ATP-dependent DNA helicase RecQ	protein from Ruegeria pomeroyi DSS-3	1.0e-36
BLAST match view associations BLAST with Recql Recql Recql RecQ protein-like (DNA helicase Q1-like)	gene from Rattus norvegicus	2.1e-35
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Bos taurus	4.5e-35
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Sus scrofa	7.4e-35
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Canis lupus familiaris	9.4e-35
BLAST match view associations BLAST with RECQL RECQL RECQL ATP-dependent DNA helicase Q1	protein from Homo sapiens	9.6e-35
BLAST match view associations BLAST with SO_2380 SO_2380 SO_2380 ATP-dependent DNA helicase RecQ family	protein from Shewanella oneidensis MR-1	1.6e-34
BLAST match view associations BLAST with SO_2380 SO_2380 SO_2380 RecQ domain protein	protein from Shewanella oneidensis MR-1	1.6e-34
BLAST match view associations BLAST with RECQL RECQL RECQL Uncharacterized protein	protein from Gallus gallus	2.9e-34
BLAST match view associations BLAST with recql recql recql RecQ protein-like (DNA helicase Q1-like)	gene_product from Danio rerio	6.9e-34
BLAST match view associations BLAST with AT1G27880 AT1G27880 AT1G27880	protein from Arabidopsis thaliana	2.6e-33
BLAST match view associations BLAST with Wrn Wrn Wrn Werner syndrome, RecQ helicase-like	gene from Rattus norvegicus	1.5e-31
BLAST match view associations BLAST with RECQSIM RECQSIM RECQSIM RECQ helicase SIM	protein from Arabidopsis thaliana	1.2e-30
BLAST match view associations BLAST with wrn wrn wrn Werner syndrome	gene_product from Danio rerio	7.0e-30
BLAST match view associations BLAST with BA_1505 BA_1505 BA_1505 ATP-dependent DNA helicase RecQ	protein from Bacillus anthracis str. Ames	1.4e-29
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 ATP-dependent DNA helicase Q4	protein from Homo sapiens	2.8e-26
BLAST match view associations BLAST with Recql4 Recql4 Recql4 RecQ protein-like 4	gene from Rattus norvegicus	4.4e-26
BLAST match view associations BLAST with Recql4 Recql4 Recql4 RecQ protein-like 4	protein from Mus musculus	1.0e-25
BLAST match view associations BLAST with RTS RTS RTS RECQL4-helicase-like protein	protein from Xenopus laevis	2.3e-25
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 Uncharacterized protein	protein from Sus scrofa	2.6e-25
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 Uncharacterized protein	protein from Sus scrofa	2.6e-25
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 Uncharacterized protein	protein from Sus scrofa	2.7e-25
BLAST match view associations BLAST with RECQL4 RECQL4 RECQL4 RECQL4 protein	protein from Bos taurus	7.4e-25
BLAST match view associations BLAST with recql4 recql4 recql4 RecQ4 protein	protein from Xenopus laevis	7.6e-25
BLAST match view associations BLAST with H9KZS5 H9KZS5 H9KZS5 Uncharacterized protein	protein from Gallus gallus	2.6e-24
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Sus scrofa	9.6e-19
BLAST match view associations BLAST with CPS_2945 CPS_2945 CPS_2945 Putative DEAD/DEAH box helicase	protein from Colwellia psychrerythraea 34H	5.3e-18
BLAST match view associations BLAST with CPS_2945 CPS_2945 CPS_2945 putative DEAD/DEAH box helicase	protein from Colwellia psychrerythraea 34H	5.3e-18
BLAST match view associations BLAST with PF14_0278 PF14_0278 PF14_0278 ATP-dependent DNA helicase, putative	gene from Plasmodium falciparum	2.6e-16
BLAST match view associations BLAST with PF14_0278 PF14_0278 PF14_0278 ATP-dependent DNA helicase, putative	protein from Plasmodium falciparum 3D7	2.6e-16
BLAST match view associations BLAST with BLM BLM BLM Uncharacterized protein	protein from Sus scrofa	2.8e-16
BLAST match view associations BLAST with RECQL5 RECQL5 RECQL5 ATP-dependent DNA helicase Q5	protein from Homo sapiens	3.6e-15
BLAST match view associations BLAST with RecQ4 RecQ4 RecQ4	protein from Drosophila melanogaster	1.3e-11
BLAST match view associations BLAST with E2RDN3 E2RDN3 E2RDN3 Uncharacterized protein	protein from Canis lupus familiaris	4.6e-08