RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7952
(444 letters)
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 84.7 bits (208), Expect = 1e-19
Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 32/229 (13%)
Query: 33 EQELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRI 92
E L+ FG+ F+ Q++ I +L D V MPTG G + + +
Sbjct: 10 ESGAKQVLQETFGYQQFR-PGQEEIIDTVLSG-RDCLVVMPTGG----GKSLCYQIPALL 63
Query: 93 PPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENK 152
G +++ + + + ++ + T + ++
Sbjct: 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCR----------- 112
Query: 153 AILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFR 212
+I+LLY+ PER + ++F + + + VDEAHC+S+WGHDFR
Sbjct: 113 ---------TGQIRLLYIAPERLMLDNFL----EHLAHWNPVLLAVDEAHCISQWGHDFR 159
Query: 213 PTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVFKT 261
P Y LG+LRQ +P +ALTATA+ + +QDI+ +L N P + +
Sbjct: 160 PEYAALGQLRQRFPT-LPFMALTATADDTTRQDIVRLLGLNDP-LIQIS 206
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 69.6 bits (170), Expect = 7e-14
Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 23/121 (19%)
Query: 286 KEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRK----VNKH-------------- 327
F K + + +I+C +++ +LA L V +
Sbjct: 22 IPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDV 81
Query: 328 --ERSRVQESFMRGEIN--VITATISFGM-GIDRQNVRFVVHWGMPSSIPAYYQESGRAG 382
+ + G+ + + T + +P + Q GR G
Sbjct: 82 VVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTG 141
Query: 383 R 383
R
Sbjct: 142 R 142
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 68.6 bits (167), Expect = 8e-14
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 13/128 (10%)
Query: 297 NKANNCGIIYCRTREHTTDLADALRRK----VNKHERSRVQESFMRGEINVITATISFGM 352
K GIIY RT E ++ ++L+ K + + E F+ GEI+ + T +
Sbjct: 22 EKLGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYG 81
Query: 353 GIDR-----QNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 407
+ R + +RF V G PS + Q + + + +E ++
Sbjct: 82 TLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLP 137
Query: 408 TDTSTKRE 415
E
Sbjct: 138 AVERHIDE 145
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 69.2 bits (168), Expect = 1e-13
Identities = 39/233 (16%), Positives = 64/233 (27%), Gaps = 36/233 (15%)
Query: 180 FHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAE 239
F L +R I++DEAH R E+ + I +TAT
Sbjct: 88 FTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGE-----AAGIFMTATPP 142
Query: 240 PSVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKA 299
S F S I + + V +F K +
Sbjct: 143 GSRDP--------------FPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSI 188
Query: 300 NNCGIIYCRTREHTTDLADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDR--- 356
I R++ L RK E + + + + + + +R
Sbjct: 189 KAGNDIAACLRKNGKK-VIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANFKAERVID 247
Query: 357 ------------QNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCR-IYHSE 396
R ++ MP + + Q GR GR+ + IY E
Sbjct: 248 PRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGE 300
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 65.5 bits (159), Expect = 1e-13
Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 6/117 (5%)
Query: 286 KEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKH---ERSRVQESFMRGEIN 342
F K + + +I+C +++ +LA L R
Sbjct: 21 IPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTNGDV 80
Query: 343 VITATISFGMGIDRQN---VRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 396
V+ AT + G + G P + Q GR GR Y + E
Sbjct: 81 VVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGRGKPGIYRFVAPGE 137
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 63.8 bits (154), Expect = 5e-12
Identities = 25/123 (20%), Positives = 44/123 (35%)
Query: 271 DVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKHERS 330
++I + L + + + F N + + + R +++ E+
Sbjct: 150 EIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQK 209
Query: 331 RVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYC 390
+ + F RGE NV+ AT G+D V VV + S Q GR GR
Sbjct: 210 LILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVI 269
Query: 391 RIY 393
+
Sbjct: 270 ILM 272
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 60.4 bits (145), Expect = 3e-11
Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 21/181 (11%)
Query: 262 STFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDL----- 316
S R N+ Y ++ + ++++ + GIIYC +R D
Sbjct: 1 SFDRPNIRYMLMEKF---KPLDQLMRYVQE------QRGKSGIIYCNSRAKVEDTAARLQ 51
Query: 317 -----ADALRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSI 371
A A + + R+ VQE F R ++ ++ AT++FGMGI++ NVRFVVH+ +P +I
Sbjct: 52 SKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 111
Query: 372 PAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYC 431
+YYQE+GRAGRDGL + +++ L ++ + + +E N +M +
Sbjct: 112 ESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLN--AMGAFA 169
Query: 432 E 432
E
Sbjct: 170 E 170
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 59.5 bits (143), Expect = 1e-10
Identities = 30/228 (13%), Positives = 56/228 (24%), Gaps = 33/228 (14%)
Query: 31 VSEQELTAKLKALF--GFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARS 88
E L + F + +QK + IL R + PTG + +
Sbjct: 24 FPEDFLLKEFVEFFRKCVGEPR-AIQKMWAKRIL-RKESFAATAPTGVGKTSFGLAMSLF 81
Query: 89 RVRIPPGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTK 148
I ++ + E ++
Sbjct: 82 LALKGKRCYVIFPTSLLVIQ-----AAETIRKYAEKAGVGT----------ENLIGYYHG 126
Query: 149 TENKAILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG 208
K E K++ T +L +H +I VD+ + +
Sbjct: 127 RIPKREKENFMQNLRNFKIVITTT--------QFLSKHYRELGHFDFIFVDDVDAILKAS 178
Query: 209 HDFRPTYRRLG------ELRQFTGNSIPIIALTATAEPSVKQDIISVL 250
+ LG ++ TATA+ K ++ L
Sbjct: 179 KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL 226
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 52.0 bits (124), Expect = 1e-08
Identities = 20/162 (12%), Positives = 50/162 (30%), Gaps = 31/162 (19%)
Query: 275 DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRR----------KV 324
DL++ ++E + ++ T +L L ++
Sbjct: 18 LDLME----GIRERAAR--------GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHEL 65
Query: 325 NKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSI-----PAYYQESG 379
+ +R + G + + G+D V V + Q G
Sbjct: 66 DAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 125
Query: 380 RAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKF 421
RA R+ +++ ++++ I + + +R L+ +
Sbjct: 126 RAARNA--RGEVWLYADRVSEAMQRAI--EETNRRRALQEAY 163
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 50.6 bits (120), Expect = 7e-08
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 289 IEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKHERSRVQESFMRGEINVITATI 348
IE+ + K+ Y + ++++ E+ RV F G +++ +T
Sbjct: 39 IEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT 98
Query: 349 SFGMGIDRQNVRFVVHWGMPSSIPAYY-QESGRAGRDGLQSYCRIYHSEH 397
+GID +V A Q GR GR G ++YC + +
Sbjct: 99 VIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 148
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 50.3 bits (119), Expect = 8e-08
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 296 DNKANNCGIIYCRTREHTTDLAD-----ALRRKVNKHERSRVQESFMRGEINVITATISF 350
+ + II+ R E ++ A+ + ++ ER + E F G I ++
Sbjct: 89 ERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVL 148
Query: 351 GMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 385
GID + V S Y Q GR R
Sbjct: 149 DEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 183
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 48.8 bits (115), Expect = 1e-07
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 303 GIIYCRTREHTTDLADALRRKVN----------KHERSRVQESFMRGEINVITATISFGM 352
G+++C+T+ T +LA LR + +R +V F + +I ++ AT
Sbjct: 31 GLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSR 90
Query: 353 GIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTST 412
GID ++ V+++ +P + +Y GR GR G + + K L Y I+
Sbjct: 91 GIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRY-IERAMKL 149
Query: 413 KREQLE 418
K ++L+
Sbjct: 150 KIKKLK 155
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 47.6 bits (112), Expect = 4e-07
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 296 DNKANNCGIIYCRTREHTTDLAD----------ALRRKVNKHERSRVQESFMRGEINVIT 345
D+ + +I+C TR +L A+ + + ER + + F G ++
Sbjct: 23 DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILI 82
Query: 346 ATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
+T GID Q V V+++ +P++ Y GR GR G + + + ++ +
Sbjct: 83 STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREL 142
Query: 406 IK 407
K
Sbjct: 143 EK 144
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 47.1 bits (111), Expect = 7e-07
Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 5/152 (3%)
Query: 275 DDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKHERSRVQE 334
DDL+ + V+ E+ L + L ++ ER +
Sbjct: 18 DDLIGEIRERVERN-ERTLV-TTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIR 75
Query: 335 SFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQES--GRAGRDGLQSYCRI 392
G+ +V+ G+D V V + S GR + +
Sbjct: 76 DLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHV 135
Query: 393 YHSEHSKKSLEYVIKTDTSTKRE-QLELKFKN 423
+ + +T +R Q E K+
Sbjct: 136 IMYADTITKSMEIAIQETKRRRAIQEEYNRKH 167
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 46.1 bits (108), Expect = 2e-06
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 296 DNKANNCGIIYCRTREHTTDLADALRRKV-------NKHERSRVQESFMRGEINVITATI 348
+N+ I+ E + LA+ +R+ +R V+++F RG I V+ AT
Sbjct: 69 ENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATP 128
Query: 349 SFGMGIDRQNVRFVVH-------WGMPSSIPAYYQESGRAGRDGL--QSYCRIYHSEHSK 399
+ G++ R +V + + Y Q +GRAGR G+ + I + +
Sbjct: 129 TLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 188
Query: 400 KSL 402
+
Sbjct: 189 EIA 191
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 43.8 bits (102), Expect = 8e-06
Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 10/122 (8%)
Query: 296 DNKANNCGIIYCRTREHTTDLADALRRKVNKH----------ERSRVQESFMRGEINVIT 345
D +I+C T+ L + +R ER + + F G V+
Sbjct: 30 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 89
Query: 346 ATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
+T + G+D V ++++ +P++ Y GR+GR G + + + L +
Sbjct: 90 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 149
Query: 406 IK 407
+
Sbjct: 150 EQ 151
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 43.3 bits (102), Expect = 1e-05
Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 21/141 (14%)
Query: 271 DVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKHERS 330
D+I+ + + + V E + + ++ E + ++ L+ K H+
Sbjct: 10 DLIYRTM-EGKFKAVAEDVAQR----YMTGQPVLVGTVAVETSELISKLLKNKGIPHQVL 64
Query: 331 RVQESFMRGEI--------NVITATISFGMGIDRQNVRFVVHWG--------MPSSIPAY 374
+ +I V AT G G D + V G S
Sbjct: 65 NAKNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRID 124
Query: 375 YQESGRAGRDGLQSYCRIYHS 395
Q GR+GR G + Y S
Sbjct: 125 NQLRGRSGRQGDPGITQFYLS 145
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 211
Score = 42.0 bits (98), Expect = 5e-05
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 322 RKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVR-FVVHWGMPSSIPAYYQESGR 380
++ + E RV F NV+ T GID ++ + +Q GR
Sbjct: 65 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 124
Query: 381 AGRDGLQSYCRI------YHSEHSKKSLEYVIKTD 409
GR Q+Y + + ++K LE + +
Sbjct: 125 VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 159
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 38.8 bits (90), Expect = 9e-04
Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 27/145 (18%)
Query: 304 IIYCRTREHTTDLADALRRK------VNKHERSRVQESFMRGEINVITATISFGMGIDRQ 357
+ + +A +LR+ +N+ R + + + + I AT MG +
Sbjct: 40 AWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGAN-L 98
Query: 358 NVRFVVHWGMPSSIPAY-------------------YQESGRAGRDGLQSYC-RIYHSEH 397
V V+ Q GR GR+ + Y
Sbjct: 99 CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPT 158
Query: 398 SKKSLEYVIKTDTSTKREQLELKFK 422
S+ + +V + S + +E++
Sbjct: 159 SENNAHHVCWLEASMLLDNMEVRGG 183
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 35.7 bits (81), Expect = 0.004
Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 296 DNKANNCGIIYCRTREHTTDLADALRRKVNKH----------ERSRVQESFMRGEINVIT 345
+ II+C+TR + L + + ++ +R+ + + F G+ V+
Sbjct: 28 GSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLI 87
Query: 346 ATISFGMGIDRQNVRFVVHWGMPSS------IPAYYQESGRAGRDGLQSYCRIYHSEHSK 399
T GID + V VV++ +P Y GR GR G +
Sbjct: 88 TTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDEL 147
Query: 400 KSLEYVIKTDTSTKREQLE 418
SL I+ ++ +QL
Sbjct: 148 PSLMK-IQDHFNSSIKQLN 165
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 33.9 bits (77), Expect = 0.023
Identities = 31/213 (14%), Positives = 66/213 (30%), Gaps = 35/213 (16%)
Query: 34 QELTAKLKALFGFDSFKCELQKKAIRHILLRTHDIFVSMPTGAVSLVGSVVSARSRVRIP 93
+ ++ GF+ ++Q K I L ++I TG+ + V
Sbjct: 13 DNILNAIRNK-GFEKPT-DIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN 70
Query: 94 PGADFILNGNVRSRNGWISPILSSFYLRFRDDKTSIVTGRSDLYQLELIVSGQTKTENKA 153
G + I+ R ++ + S I G++ Q++
Sbjct: 71 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIK------------- 117
Query: 154 ILEELRLVKPRIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWG--HDF 211
L I + TP R + ++ + + + Y ++DEA + G D
Sbjct: 118 -----ALKNANI--VVGTPGRIL----DHINRGTLNLKNVKYFILDEADEMLNMGFIKDV 166
Query: 212 RPTYRRLGELRQFTGNSIPIIALTATAEPSVKQ 244
+ ++ I+ +AT +
Sbjct: 167 EKILNACNKDKR-------ILLFSATMPREILN 192
>d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1,
Nqo1 {Thermus thermophilus [TaxId: 274]}
Length = 243
Score = 31.9 bits (72), Expect = 0.13
Identities = 24/206 (11%), Positives = 59/206 (28%), Gaps = 33/206 (16%)
Query: 200 EAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQDIISVLKFNKPYKVF 259
+ + G PT + + + G +I +EP +D + + P+ +
Sbjct: 52 KRSGLRGRGGAGFPTGLKWSFMPKDDGKQHYLICNADESEPGSFKDRYILE--DVPHLLI 109
Query: 260 KTSTFRSNLFYDVIFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADA 319
+ + ++ Y + +E+ + +A G +
Sbjct: 110 EGMILAGYAIRATVGYIYVRGEYRRAADRLEQAI---KEARARGYLGKNLFGTDFSFDLH 166
Query: 320 LRRKVNKHERSRVQESFMRGEINVITATISFGMGIDRQNVRFVV---HWGMPSSI----- 371
+ R +++ GE + ++ R F WG P++I
Sbjct: 167 VH---------RGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVET 217
Query: 372 -----------PAYYQESGRAGRDGL 386
++ + G G+
Sbjct: 218 LASVVPIMERGADWFAQMGTEQSKGM 243
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 30.6 bits (68), Expect = 0.30
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 190 YNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAE 239
N+ ++ DE H + +Y ++ ++ + + LTAT E
Sbjct: 167 GNRFMLLIFDEVHHLP------AESYVQIAQMS----IAPFRLGLTATFE 206
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus
halodurans [TaxId: 86665]}
Length = 118
Score = 29.5 bits (66), Expect = 0.33
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 8/68 (11%)
Query: 176 VTESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALT 235
V S QH + + ++V V L +++ ++ LT
Sbjct: 31 VHPSGSAFFQHRSQLSTCDLLIVS-DQLVDLSIFSL------LDIVKE-QTKQPSVLILT 82
Query: 236 ATAEPSVK 243
++
Sbjct: 83 TGRHELIE 90
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 29.3 bits (64), Expect = 0.55
Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 12/142 (8%)
Query: 296 DNKANNCGIIYCRTREHTTDLADALRRKVNKH----------ERSRVQESFMRGEINVIT 345
D N +I+ ++ + LA L + ER + F + ++
Sbjct: 23 DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILV 82
Query: 346 ATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 405
AT FG G+D + V ++ MP Y RAGR G + + S+ + +
Sbjct: 83 ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILND 142
Query: 406 IKTDTSTKREQL--ELKFKNYL 425
++ +L E+ +Y+
Sbjct: 143 VQDRFEVNISELPDEIDISSYI 164
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 29.1 bits (64), Expect = 0.61
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 181 HYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQF--TGNSIPIIALTAT 237
+L I+ DE H + +G + T + ++ TAT
Sbjct: 83 KFLADGGCSGGAYDIIICDECHSTD------ATSILGIGTVLDQAETAGARLVVLATAT 135
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 264
Score = 29.8 bits (66), Expect = 0.64
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 183 LLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEP 240
L+Q V + L +++DE H R ++ L G + + ++AT P
Sbjct: 196 LIQEDVHFKNLGLVIIDEQH---------RFGVKQREALMNK-GKMVDTLVMSATPIP 243
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 28.9 bits (63), Expect = 0.89
Identities = 19/81 (23%), Positives = 37/81 (45%)
Query: 327 HERSRVQESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL 386
ER++V F +G++ + + GID Q V V+++ P + Y GR+GR G
Sbjct: 69 QERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGH 128
Query: 387 QSYCRIYHSEHSKKSLEYVIK 407
+ + + +L + +
Sbjct: 129 LGLAINLINWNDRFNLYKIEQ 149
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 29.1 bits (64), Expect = 1.0
Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 1/122 (0%)
Query: 273 IFDDLLKDSYAHVKEFIEKCLGKDNKANNCGIIYCRTREHTTDLADALRRKVNKHERSRV 332
+ D +L + + + + + CR R + D + +
Sbjct: 105 VLDYILAMTRTTTSDKVVLV-SNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVER 163
Query: 333 QESFMRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI 392
+ E + ++ + G G++ +V + + Q R RDG + C I
Sbjct: 164 FNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYI 223
Query: 393 YH 394
Y
Sbjct: 224 YR 225
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 28.6 bits (62), Expect = 1.3
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 181 HYLLQHLVRYNKLAYIVVDEAHCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEP 240
+ LL + ++ IV DEAH Y + + + +I LTA+
Sbjct: 114 NDLLAGRISLEDVSLIVFDEAHR-----AVGNYAYVFIAREYKRQAKNPLVIGLTASPGS 168
Query: 241 SVK--QDIISVLKFNK 254
+ + ++I+ L
Sbjct: 169 TPEKIMEVINNLGIEH 184
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 128
Score = 26.1 bits (57), Expect = 5.4
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 27/101 (26%)
Query: 165 IKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAH---------------------C 203
+K+L V E +L ++ A
Sbjct: 2 VKILVVEDNHVNQEVIKRMLN------LEGIENIELACDGQEAFDKVKELTSKGENYNMI 55
Query: 204 VSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQ 244
+ +R+ G + PI+ALTA A+ S +
Sbjct: 56 FMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIK 96
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 24.4 bits (53), Expect = 6.3
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 241 SVKQDIISVLKFNKPYKVFKTSTFRSNLFYDVIFDD 276
+ Q +IS K + Y+ + FY+V FDD
Sbjct: 4 TAGQKVISKHKNGRFYQCEVVRL-TTETFYEVNFDD 38
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54
(NtrC1), N-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 137
Score = 25.8 bits (56), Expect = 8.0
Identities = 3/44 (6%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 202 HCVSEWGHDFRPTYRRLGELRQFTGNSIPIIALTATAEPSVKQD 245
+ + L +++ +I +T +
Sbjct: 47 VVLLDLLLPDVNGLEILKWIKE-RSPETEVIVITGHGTIKTAVE 89
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2
[TaxId: 382]}
Length = 129
Score = 25.3 bits (55), Expect = 8.6
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 23/98 (23%)
Query: 164 RIKLLYVTPERAVTESFHYLLQHLVRYNKLAYIVVDEAH----------------CVSEW 207
+IK+L V + LQ +L + + A +S++
Sbjct: 6 KIKVLIVDDQVTSRLLLGDALQ------QLGFKQITAAGDGEQGMKIMAQNPHHLVISDF 59
Query: 208 GHDFRPTYRRLGELRQFTGNS-IPIIALTATAEPSVKQ 244
L +R I LTA + ++ Q
Sbjct: 60 NMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQ 97
>d1lg7a_ d.213.1.1 (A:) VSV matrix protein {Vesicular stomatitis
virus, VSV [TaxId: 11276]}
Length = 170
Score = 25.6 bits (56), Expect = 9.8
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 178 ESFHYLLQHLVRYNKLAYIVVDEAHCVSEWGHDF------RPTYRRL 218
E F + ++ VR N+ D A VS W H + RP Y+ L
Sbjct: 5 EKFFFTVKMTVRSNRPFRTYSDVAAAVSHWDHMYIGMAGKRPFYKIL 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.395
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,611,537
Number of extensions: 75281
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 41
Length of query: 444
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 356
Effective length of database: 1,199,356
Effective search space: 426970736
Effective search space used: 426970736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)