BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7959
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 59/92 (64%)
Query: 7 VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSL 66
VI ATI+FGMGID+ +VRFV+H +P S+ YYQESGRAGRDG S+C ++++ H L
Sbjct: 942 VICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRL 1001
Query: 67 EYVIKTDTSTKREQLELKFKNYLSMLEYCEQV 98
+ +I + E F N SM+ YCE +
Sbjct: 1002 KRLIMMEKDGNHHTRETHFNNLYSMVHYCENI 1033
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 4 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63
+ +VI ATI+FGMGID+ +VRFV+H+ +P SI YYQE+GRAGRDG+ SYC + +S H
Sbjct: 519 KFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDS 578
Query: 64 KSLEYVIKTDTSTKREQLELKFKNYLSMLEYCEQV 98
L +I+ +T + + N L ++ YCE V
Sbjct: 579 IRLRRMIEEGNTTTGVR-SMHLNNVLQVVAYCENV 612
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%)
Query: 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH 61
+ + VI ATI+FGMGID+ +VR+V+H +P S+ YYQESGRAGRDG S+C +++S H
Sbjct: 889 QDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYH 948
Query: 62 SKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCEQV 98
+ +I+ + + F N SM+ YCE V
Sbjct: 949 DVTRIRRLIQMEKDGNSHTKQTHFNNLYSMVHYCENV 985
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 6/104 (5%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
M ++ VI ATISFGMG+D+ NVRFV HW + S+ YYQESGRAGRDG S+CR+Y+S
Sbjct: 306 MEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSR 365
Query: 61 HSKKSLEYVIKTDTSTKREQLELKFKN------YLSMLEYCEQV 98
+ + + ++I+ + + +E+ K + + +++ +CE++
Sbjct: 366 NDRDQVSFLIRKEVAKLQEKRGNKASDKATIMAFDALVTFCEEL 409
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 4 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63
EI VI AT++FGMGID+ +VRFV H+ +P ++ YYQE+GRAGRDG SYC Y S
Sbjct: 950 EIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDI 1009
Query: 64 KSLEYVIKTDTSTKREQLELKFKNYLSMLEYCEQV 98
++++ +I+ D + RE E ++ YC+ V
Sbjct: 1010 RTMQTMIQKDKNLDRENKEKHLNKLQQVMAYCDNV 1044
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 58/92 (63%)
Query: 7 VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSL 66
VI ATI+FGMGID+ +VRFV+H +P S+ YYQESGRAGRDG S+C ++++ H L
Sbjct: 950 VICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRL 1009
Query: 67 EYVIKTDTSTKREQLELKFKNYLSMLEYCEQV 98
+ +I + E N SM+ YCE +
Sbjct: 1010 KRLIMMEKDGNYHTKETHVNNLYSMVHYCENI 1041
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%)
Query: 7 VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSL 66
VI ATI+FGMGID+ +VR+V+H +P S+ YY ESGRAGRDG S+C +++S L
Sbjct: 672 VICATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTRL 731
Query: 67 EYVIKTDTSTKREQLELKFKNYLSMLEYCEQV 98
+I + + F N SM+ YCE V
Sbjct: 732 RRLILMEKDGNSHTRQTHFNNLYSMVHYCENV 763
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 64/98 (65%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
+ G++ VI AT++FGMGID+ +VRFV+H+ +P SI YYQE+GRAGRDG + C +Y++
Sbjct: 1005 LTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNY 1064
Query: 61 HSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCEQV 98
++ ++ +D + + ++ N ++ YCE +
Sbjct: 1065 SDMLRIKKMLDSDKALQYNVKKIHVDNLYRIVGYCENL 1102
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 58
GEI VI AT++FGMGID+ +VRFV+H +P SI YYQESGRAGRDGL + C +Y+
Sbjct: 358 GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQESGRAGRDGLPATCILYY 413
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 13/109 (11%)
Query: 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH 61
+ EIN+I AT++FGMGI++ +VRFV+H +P SI Y+QE GRAGRDG +S C +Y+S
Sbjct: 737 KDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYT 796
Query: 62 SKKSLEYVIKTD-------------TSTKREQLELKFKNYLSMLEYCEQ 97
++++I ++ LE +N L M+ YCE
Sbjct: 797 DYIRVKHMISQGGLGQGQMKMGYNCKASSGRMLETNTENLLRMVSYCEN 845
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
MR +I I AT++FGMGID+ +VR V+H+G P++I +YYQE GRAGRDG S CR++ +
Sbjct: 493 MRDKITTIVATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAP 552
Query: 61 HSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCEQV 98
++++ ++ +Q E +N ML E V
Sbjct: 553 KDLNTIKFKLRN-----SQQKEEVVENLTMMLRQLELV 585
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 58
+ G+I VI AT++FGMGID+ NVRFV+H +P SI YYQESGRAGRDG + C +Y+
Sbjct: 379 ISGKIQVIVATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYY 436
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 13/108 (12%)
Query: 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH 61
+ EIN+I AT++FGMGI++ +VRFV+H +P SI Y+QE GRAGRDG +S C +Y+
Sbjct: 721 KDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYG 780
Query: 62 SKKSLEYVIK-------------TDTSTKREQLELKFKNYLSMLEYCE 96
++++I ++ LE +N L M+ YCE
Sbjct: 781 DYIRVKHMISQGGVDQSPMATGYNRVASSGRLLETNTENLLRMVRYCE 828
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 59/90 (65%)
Query: 7 VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSL 66
+I AT++FGMGID+++VR V H+ +P S+ ++YQESGRAGRD L S +Y+ +K +
Sbjct: 309 IIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKM 368
Query: 67 EYVIKTDTSTKREQLELKFKNYLSMLEYCE 96
EY+++ + K + ++ ++ YCE
Sbjct: 369 EYLLRNSENKKSSSSKKPTSDFEQIVTYCE 398
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
+ E+ V+ AT +FGMGID+ N+RFV+H +P + +YYQE+GRAGRDGL S C + S
Sbjct: 277 LNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSP 336
Query: 61 HSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYC 95
++I+ ++++ +L K M++YC
Sbjct: 337 QDIMVQRFLIEQSEHEEKQKQDL--KKLRQMVDYC 369
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62
GE+ ++ ATI+FGMGID+ +VRFV+H + ++ +YYQESGRAGRDGLQ+ C + +
Sbjct: 477 GEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKD 536
Query: 63 KKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 96
+ +++ ++ + M +YCE
Sbjct: 537 FSRVVCMLRNGQGRNMDRFKSAMAQAKKMQQYCE 570
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 60/98 (61%), Gaps = 7/98 (7%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62
G +I ATI+FGMG+D+ +VRFV+H P S+ YYQE+GRAGRDG ++C +++S
Sbjct: 792 GSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKD 851
Query: 63 KKSLEYVIKT---DTSTKREQLELKFKNYLSMLEYCEQ 97
+ + +I + D TK Q ++ ++++CE
Sbjct: 852 HVTFQKLIMSGDGDAETKERQRQM----LRQVIQFCEN 885
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH 61
R + V+ ATI+FGMGI++ NVRFV H+ +P SI +YYQE+GRAGRD L + +++
Sbjct: 287 RDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPA 346
Query: 62 SKKSLEYVIKTDTSTKREQLE 82
L+ ++ T + Q+E
Sbjct: 347 DYAWLQKILLEKPETPQRQIE 367
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI 56
+R EI + ATI+FGMGI++ ++R V+H+G P + +YYQE GRAGRDGLQS C +
Sbjct: 811 VRDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHV 866
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI 56
+R EI + AT++FGMGI++ ++R V+H+G P + +YYQE GRAGRDGLQS C +
Sbjct: 776 LRDEIQCVVATVAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHL 831
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH 61
R + V+ ATI+FGMGI++ NVRFVVH+ +P SI +YYQE+GRAGRD L + +++
Sbjct: 297 RDNVQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPA 356
Query: 62 SKKSLEYVIKTDTSTKREQLE 82
L ++ + + Q+E
Sbjct: 357 DYAWLHKILLEKPESPQRQIE 377
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 45/59 (76%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHS 59
+ +I ++ ATI+FGMGI++ +VR V+H+G P +I YYQE GRAGRDG +SYC +++
Sbjct: 288 INNKIKIVVATIAFGMGINKPDVRVVIHYGAPKNIEGYYQEIGRAGRDGEKSYCYAFYN 346
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 58
EI V+ AT++FGMGID+ +VRFV+H M S+ YYQESGRAGRD +++ C +Y+
Sbjct: 363 NEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYY 418
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 58
EI V+ AT++FGMGID+ +VRFV+H M S+ YYQESGRAGRD +++ C +Y+
Sbjct: 363 NEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYY 418
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 75.5 bits (184), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 46/57 (80%)
Query: 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 58
R ++ ++ AT++FGMGI++ NVRFVVH+ +P +I +YYQE+GRAGRDGL + +++
Sbjct: 284 RDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYC 54
MR EI+ + AT++FGMGI++ ++R V+H+G P + +YYQE GRAGRDGL S C
Sbjct: 754 MRDEIHCVVATVAFGMGINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCC 807
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 46/57 (80%)
Query: 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 58
R ++ ++ AT++FGMGI++ NVRFVVH+ +P +I +YYQE+GRAGRDGL + +++
Sbjct: 284 RDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 43/55 (78%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 57
++ V+ ATI+FGMGID++NVR ++H+G S+ AYYQE+GRAGRDG + C +Y
Sbjct: 546 NKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY 600
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 58
E+ V+ AT++FGMGID+ +VRFV+H M S+ YYQESGRAGRD ++ C +Y+
Sbjct: 363 NELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYY 418
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 58
E+ V+ AT++FGMGID+ +VRFV+H M S+ YYQESGRAGRD ++ C +Y+
Sbjct: 363 NELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYY 418
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 57
+ ++ VI T++FGMGI++ +VRFV+H + S+ YYQESGRAGRDGL S C ++
Sbjct: 361 KNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILF 416
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 43/57 (75%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 57
M+G++ V+ AT++FGMG+DR +VR V+H G+P S +Y Q GRAGRDG ++C ++
Sbjct: 761 MQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLF 817
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 57
MRG + ++ AT++FGMG+DR +VR V+H G+P S +Y Q GRAGRDG ++C ++
Sbjct: 783 MRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLF 839
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62
+I V+ AT++FGMG+D+ +V V+H+ +P S+ Y QE GRAGRDG SYC +++ +
Sbjct: 535 NKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDT 594
Query: 63 KKSLEYVIKTD 73
L + +D
Sbjct: 595 YLKLRSLAHSD 605
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
+ +++VI T +FGMG+D+ ++R+V+H+ +P + A+ QE GRAGRDG S + +
Sbjct: 276 IHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRAGRDGKPSVSILLRAP 335
Query: 61 HSKKSLEYVIKTDTSTKRE 79
+ E +I+ ++ T E
Sbjct: 336 GDFELQEQIIQMESVTAEE 354
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62
G+ ++ AT +FG+GI+ VR VVH+G+P+S Y QE+GRAGRDG + +++ ++
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
Query: 63 KKSLEYV 69
YV
Sbjct: 1530 STWSSYV 1536
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62
G+ ++ AT +FG+GI+ VR VVH+G+P+S Y QE+GRAGRDG + +++ ++
Sbjct: 1651 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1710
Query: 63 KKSLEYV 69
YV
Sbjct: 1711 STWSSYV 1717
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
+ G+I+ + T +FG+GID+ + R+V+H+ P + Y QE GRAGRD + C SE
Sbjct: 286 LTGQISSVVCTNAFGLGIDKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAECLTLVSE 345
>sp|Q0E2Z7|RH41_ORYSJ DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp.
japonica GN=Os02g0201900 PE=2 SV=2
Length = 536
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
+ GE++V+ T G G+D VR V+ + MP+SI Y + GRA R G++ ++ +E
Sbjct: 431 LTGEVSVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNE 490
Query: 61 HSK---KSLEYVIKT 72
+ + L ++KT
Sbjct: 491 EDRNLFRELVQILKT 505
>sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=PRP28 PE=3 SV=1
Length = 705
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 49
G+ N++ AT G GID +V VV++ MPSSI AY GR GR G
Sbjct: 591 GQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRIGRTGRAG 637
>sp|Q9DBN9|DDX59_MOUSE Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus GN=Ddx59
PE=2 SV=1
Length = 619
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
+ G+ V+ +T G G+D NV+ VV++ MPSS+ Y + GR GR G + +
Sbjct: 492 LEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINN 551
Query: 61 HSKK 64
+SK+
Sbjct: 552 NSKR 555
>sp|Q66HG7|DDX59_RAT Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus
GN=Ddx59 PE=2 SV=1
Length = 589
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
+ G+ V+ +T G G+D NV+ VV++ MPSS+ Y + GR GR G + +
Sbjct: 462 LEGDYEVVVSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINN 521
Query: 61 HSKK 64
+SK+
Sbjct: 522 NSKR 525
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp.
japonica GN=Os12g0611200 PE=2 SV=1
Length = 628
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62
G N++ AT G+D NV V+H+ +P+S + SGR GR G + + HS
Sbjct: 390 GHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQ 449
Query: 63 KKSLEYVIKTDTSTKREQL 81
+++ +++ D K +L
Sbjct: 450 SRAIR-MVENDVGCKFTEL 467
>sp|Q5T1V6|DDX59_HUMAN Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens GN=DDX59
PE=1 SV=1
Length = 619
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
+ G+ V+ +T G G+D +VR VV++ MPSS+ Y + GR GR G + +
Sbjct: 492 LEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINN 551
Query: 61 HSKK 64
+SK+
Sbjct: 552 NSKR 555
>sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp.
japonica GN=Os02g0795900 PE=2 SV=1
Length = 521
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62
G+I+V+ T GI +R+V+++ MP + Y +GR R G C + +H
Sbjct: 392 GKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHE 451
Query: 63 KKSLEYVIK 71
K+ + ++K
Sbjct: 452 VKAFDKMLK 460
>sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=PRP28 PE=3 SV=1
Length = 738
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 49
GEI+V+ AT G GID +V V++W M +I Y GR GR G
Sbjct: 633 GEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRAG 679
>sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=PRP28 PE=3 SV=1
Length = 738
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 49
GEI+V+ AT G GID +V V++W M +I Y GR GR G
Sbjct: 633 GEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRAG 679
>sp|O13792|SUB2_SCHPO ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=uap56 PE=1 SV=3
Length = 434
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 7 VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHS 59
+ AT FG GID + V V+++ MP S +Y GRAGR G + + S
Sbjct: 348 ICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSS 400
>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis
thaliana GN=RH3 PE=1 SV=2
Length = 748
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH 61
+G+ V+ AT G+D NV V+H+ +P+ + SGR GR G + + H+
Sbjct: 398 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457
Query: 62 SKKSL 66
K+++
Sbjct: 458 QKRTV 462
>sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PRP28 PE=3 SV=1
Length = 575
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 49
RG ++V+ AT G G+D NV VV++ M ++I +Y GR GR G
Sbjct: 479 RGAVDVLVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGRTGRAG 526
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,349,003
Number of Sequences: 539616
Number of extensions: 1310283
Number of successful extensions: 4291
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 3530
Number of HSP's gapped (non-prelim): 806
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)