Query psy7959
Match_columns 101
No_of_seqs 110 out of 1225
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 23:10:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03137 ATP-dependent DNA hel 99.9 2.1E-22 4.6E-27 162.0 7.8 97 2-98 728-837 (1195)
2 COG0514 RecQ Superfamily II DN 99.9 1.5E-21 3.3E-26 149.3 7.6 97 1-98 277-373 (590)
3 KOG0330|consensus 99.8 9.9E-22 2.2E-26 143.6 4.4 70 2-71 348-417 (476)
4 PRK11057 ATP-dependent DNA hel 99.8 3.9E-21 8.4E-26 148.5 7.8 95 2-98 284-378 (607)
5 TIGR00614 recQ_fam ATP-depende 99.8 7.4E-21 1.6E-25 143.1 8.1 76 2-77 274-349 (470)
6 KOG0331|consensus 99.8 2.9E-21 6.4E-26 145.8 5.0 72 2-73 389-460 (519)
7 TIGR01389 recQ ATP-dependent D 99.8 1.5E-20 3.3E-25 144.6 7.9 97 1-98 271-367 (591)
8 PRK04837 ATP-dependent RNA hel 99.8 1.4E-20 3E-25 139.7 6.7 68 2-69 303-370 (423)
9 COG0513 SrmB Superfamily II DN 99.8 1.2E-20 2.5E-25 143.6 6.2 71 2-72 321-392 (513)
10 KOG0336|consensus 99.8 2.2E-20 4.8E-25 137.9 5.2 71 2-72 513-583 (629)
11 PLN00206 DEAD-box ATP-dependen 99.8 3.6E-20 7.7E-25 140.9 5.2 69 2-70 416-484 (518)
12 PTZ00110 helicase; Provisional 99.8 6.7E-20 1.4E-24 140.2 5.3 71 2-72 425-495 (545)
13 KOG0352|consensus 99.8 1.5E-19 3.2E-24 134.1 6.5 98 1-98 302-405 (641)
14 KOG0333|consensus 99.8 4.3E-20 9.2E-25 139.1 3.5 63 2-64 565-627 (673)
15 KOG0340|consensus 99.8 7.7E-20 1.7E-24 132.6 4.5 68 2-69 302-369 (442)
16 PRK10590 ATP-dependent RNA hel 99.8 1.7E-19 3.7E-24 135.3 5.6 70 2-71 293-362 (456)
17 PRK11192 ATP-dependent RNA hel 99.8 2.4E-19 5.3E-24 133.3 5.8 69 2-70 293-361 (434)
18 PRK11776 ATP-dependent RNA hel 99.8 2.7E-19 5.9E-24 134.0 5.8 70 2-71 290-359 (460)
19 KOG0328|consensus 99.8 2.5E-19 5.5E-24 127.3 4.9 70 2-71 314-383 (400)
20 PTZ00424 helicase 45; Provisio 99.8 2.8E-19 6.1E-24 131.2 5.3 70 2-71 315-384 (401)
21 PRK01297 ATP-dependent RNA hel 99.8 3.9E-19 8.5E-24 133.7 5.3 68 2-69 383-450 (475)
22 KOG0342|consensus 99.8 5E-19 1.1E-23 132.1 4.8 72 4-75 380-451 (543)
23 KOG0350|consensus 99.8 1.9E-18 4.1E-23 129.6 7.8 74 2-75 481-554 (620)
24 PRK04537 ATP-dependent RNA hel 99.8 6.9E-19 1.5E-23 135.4 5.5 69 2-70 305-373 (572)
25 PRK11634 ATP-dependent RNA hel 99.7 8.8E-19 1.9E-23 136.0 4.9 70 2-71 293-362 (629)
26 KOG0335|consensus 99.7 1E-18 2.3E-23 130.7 5.0 65 2-66 385-449 (482)
27 KOG0326|consensus 99.7 8.7E-19 1.9E-23 126.2 4.0 71 2-72 370-440 (459)
28 KOG0338|consensus 99.7 2E-18 4.3E-23 130.0 6.0 72 2-73 474-545 (691)
29 KOG0345|consensus 99.7 1.9E-18 4.1E-23 128.8 5.0 65 6-70 309-373 (567)
30 KOG0351|consensus 99.7 2.4E-18 5.3E-23 137.5 5.9 97 1-98 532-629 (941)
31 KOG0344|consensus 99.7 1.7E-18 3.8E-23 131.1 4.4 67 2-68 436-502 (593)
32 KOG0332|consensus 99.7 2.8E-18 6E-23 125.3 3.8 61 2-62 378-444 (477)
33 KOG0341|consensus 99.7 1.3E-18 2.8E-23 128.0 2.0 61 2-62 469-529 (610)
34 TIGR03817 DECH_helic helicase/ 99.7 5.4E-18 1.2E-22 133.6 4.7 60 2-61 327-386 (742)
35 KOG0348|consensus 99.7 2E-17 4.3E-22 125.1 4.1 68 6-73 499-566 (708)
36 KOG0343|consensus 99.7 7.6E-17 1.7E-21 122.4 6.1 70 5-74 366-436 (758)
37 KOG0347|consensus 99.7 1.1E-16 2.3E-21 121.5 6.4 68 5-72 514-581 (731)
38 PF00271 Helicase_C: Helicase 99.6 2.9E-16 6.4E-21 91.6 1.6 48 2-49 31-78 (78)
39 PHA02653 RNA helicase NPH-II; 99.6 1.2E-15 2.7E-20 119.1 4.3 61 2-63 444-516 (675)
40 COG1111 MPH1 ERCC4-like helica 99.6 7.5E-15 1.6E-19 110.4 6.8 63 2-65 423-485 (542)
41 KOG0327|consensus 99.6 3.2E-15 7E-20 109.1 4.5 71 2-72 311-381 (397)
42 TIGR00643 recG ATP-dependent D 99.5 9E-15 1.9E-19 113.7 4.9 58 2-59 506-564 (630)
43 PRK12898 secA preprotein trans 99.5 9.4E-15 2E-19 113.7 3.9 59 4-62 521-587 (656)
44 PRK10917 ATP-dependent DNA hel 99.5 2.1E-14 4.5E-19 112.6 5.7 58 2-59 529-587 (681)
45 TIGR01970 DEAH_box_HrpB ATP-de 99.5 6E-15 1.3E-19 117.4 2.6 64 2-66 260-341 (819)
46 PRK13767 ATP-dependent helicas 99.5 2E-14 4.4E-19 115.2 5.5 48 2-49 338-385 (876)
47 KOG0346|consensus 99.5 3.3E-14 7.2E-19 105.9 5.3 51 14-64 363-413 (569)
48 KOG0353|consensus 99.5 5.4E-14 1.2E-18 103.9 5.7 88 2-97 365-495 (695)
49 TIGR00580 mfd transcription-re 99.5 2.3E-14 5E-19 115.2 4.1 60 2-61 710-770 (926)
50 KOG4284|consensus 99.5 3.6E-14 7.8E-19 109.7 4.3 60 4-63 322-381 (980)
51 PRK11664 ATP-dependent RNA hel 99.5 3E-14 6.4E-19 113.4 4.0 63 2-65 263-343 (812)
52 PRK09200 preprotein translocas 99.5 3.1E-14 6.7E-19 112.7 3.8 58 5-62 477-542 (790)
53 PRK11131 ATP-dependent RNA hel 99.4 4.3E-14 9.3E-19 115.9 3.5 64 2-66 335-416 (1294)
54 PRK09751 putative ATP-dependen 99.4 1.2E-13 2.6E-18 114.7 5.6 58 2-59 325-383 (1490)
55 PRK04914 ATP-dependent helicas 99.4 8.2E-14 1.8E-18 112.2 4.3 57 3-59 545-601 (956)
56 KOG0334|consensus 99.4 9.5E-14 2.1E-18 110.8 3.9 71 2-72 661-731 (997)
57 PRK13766 Hef nuclease; Provisi 99.4 4.6E-13 1E-17 105.8 6.8 63 2-65 421-483 (773)
58 PRK02362 ski2-like helicase; P 99.4 1.9E-13 4.2E-18 107.8 4.4 73 2-74 327-412 (737)
59 KOG0329|consensus 99.4 4.3E-14 9.3E-19 99.8 0.6 56 8-63 302-357 (387)
60 KOG0948|consensus 99.4 2.8E-13 6.1E-18 106.0 5.0 98 2-99 470-578 (1041)
61 KOG0339|consensus 99.4 1.7E-13 3.7E-18 103.7 3.3 72 2-73 516-587 (731)
62 TIGR00631 uvrb excinuclease AB 99.4 4.4E-13 9.5E-18 104.8 5.3 61 2-63 490-555 (655)
63 PRK10689 transcription-repair 99.4 1.1E-13 2.3E-18 113.3 1.7 59 2-60 859-918 (1147)
64 cd00079 HELICc Helicase superf 99.4 5.5E-13 1.2E-17 83.3 4.4 55 2-56 76-130 (131)
65 smart00490 HELICc helicase sup 99.4 3.2E-13 6.9E-18 78.1 2.6 48 2-49 35-82 (82)
66 KOG0354|consensus 99.4 8.9E-13 1.9E-17 103.2 5.8 56 2-59 472-527 (746)
67 PRK05298 excinuclease ABC subu 99.3 1.7E-12 3.6E-17 101.6 5.8 59 2-61 494-557 (652)
68 TIGR01967 DEAH_box_HrpA ATP-de 99.3 4.2E-13 9.1E-18 110.3 2.3 62 4-66 330-409 (1283)
69 TIGR01587 cas3_core CRISPR-ass 99.3 8.9E-13 1.9E-17 95.7 3.2 57 2-61 276-336 (358)
70 TIGR03714 secA2 accessory Sec 99.3 1.2E-12 2.7E-17 103.2 3.9 58 5-63 473-539 (762)
71 PRK00254 ski2-like helicase; P 99.3 2.2E-12 4.8E-17 101.6 4.7 72 2-73 319-401 (720)
72 TIGR00963 secA preprotein tran 99.3 1.8E-12 4E-17 101.9 3.6 61 3-63 452-519 (745)
73 KOG0337|consensus 99.3 4.1E-12 8.8E-17 94.4 4.5 63 3-65 310-372 (529)
74 KOG0349|consensus 99.3 4.4E-12 9.5E-17 95.0 3.7 63 2-64 556-618 (725)
75 PRK05580 primosome assembly pr 99.2 1E-11 2.2E-16 97.6 5.1 77 2-78 478-566 (679)
76 PRK12906 secA preprotein trans 99.2 4.8E-12 1E-16 100.2 3.1 58 5-62 489-554 (796)
77 PRK01172 ski2-like helicase; P 99.2 7.3E-12 1.6E-16 98.0 4.0 71 2-73 309-391 (674)
78 TIGR00595 priA primosomal prot 99.2 1.9E-11 4.1E-16 93.3 6.1 76 2-77 310-397 (505)
79 COG1201 Lhr Lhr-like helicases 99.2 1.3E-11 2.8E-16 98.0 4.5 59 2-60 302-361 (814)
80 PHA02558 uvsW UvsW helicase; P 99.2 2.5E-11 5.4E-16 92.4 5.4 58 2-59 392-450 (501)
81 PRK12900 secA preprotein trans 99.1 2.4E-11 5.3E-16 97.7 2.0 61 3-63 645-713 (1025)
82 TIGR00603 rad25 DNA repair hel 99.1 6.1E-11 1.3E-15 93.6 4.2 62 3-64 541-610 (732)
83 KOG0947|consensus 99.1 2.2E-10 4.7E-15 91.8 7.2 92 2-94 654-758 (1248)
84 TIGR02621 cas3_GSU0051 CRISPR- 99.1 4.2E-11 9.2E-16 95.5 2.8 52 5-59 337-389 (844)
85 KOG0953|consensus 99.1 1.5E-10 3.2E-15 88.6 4.6 77 2-79 407-494 (700)
86 KOG4150|consensus 99.1 1E-10 2.2E-15 90.2 3.5 62 2-63 581-642 (1034)
87 TIGR03158 cas3_cyano CRISPR-as 99.0 1.1E-10 2.3E-15 85.6 2.0 40 4-46 318-357 (357)
88 PRK14701 reverse gyrase; Provi 98.9 3.2E-10 7E-15 95.5 2.5 71 2-72 376-467 (1638)
89 COG1198 PriA Primosomal protei 98.8 5.9E-09 1.3E-13 82.4 5.4 78 2-79 532-621 (730)
90 KOG0922|consensus 98.8 3.6E-09 7.8E-14 82.1 2.7 72 2-77 314-403 (674)
91 KOG0924|consensus 98.8 7E-09 1.5E-13 81.3 4.3 74 3-79 622-713 (1042)
92 COG1200 RecG RecG-like helicas 98.8 8.6E-09 1.9E-13 80.4 4.5 61 2-62 531-592 (677)
93 KOG0923|consensus 98.8 5.9E-09 1.3E-13 81.4 3.2 62 2-64 530-609 (902)
94 COG1643 HrpA HrpA-like helicas 98.7 5.6E-09 1.2E-13 83.6 3.2 61 3-64 312-390 (845)
95 COG4581 Superfamily II RNA hel 98.7 1.5E-08 3.3E-13 82.3 4.7 94 2-95 468-573 (1041)
96 COG1205 Distinct helicase fami 98.7 5.8E-09 1.2E-13 83.9 1.2 62 2-63 362-424 (851)
97 COG1197 Mfd Transcription-repa 98.7 1.9E-08 4.1E-13 82.1 3.9 60 2-61 853-913 (1139)
98 PRK09401 reverse gyrase; Revie 98.6 1.9E-08 4.1E-13 83.2 2.1 45 2-46 374-429 (1176)
99 COG1204 Superfamily II helicas 98.5 1.1E-07 2.3E-12 76.0 5.1 60 2-61 338-408 (766)
100 KOG0926|consensus 98.5 6.2E-08 1.3E-12 77.2 3.5 60 2-62 628-705 (1172)
101 KOG0949|consensus 98.5 1.2E-07 2.6E-12 76.7 4.9 79 2-82 986-1067(1330)
102 KOG0950|consensus 98.5 1.1E-07 2.4E-12 76.4 4.3 78 2-79 546-629 (1008)
103 PRK09694 helicase Cas3; Provis 98.4 7.1E-08 1.5E-12 77.9 1.5 43 5-50 622-664 (878)
104 COG4098 comFA Superfamily II D 98.4 3.8E-07 8.2E-12 67.0 4.3 58 2-59 353-414 (441)
105 COG1061 SSL2 DNA or RNA helica 98.4 2.2E-07 4.8E-12 70.1 3.1 47 2-48 330-376 (442)
106 PLN03142 Probable chromatin-re 98.4 4.6E-07 9.9E-12 74.2 4.3 59 5-63 541-601 (1033)
107 PRK11448 hsdR type I restricti 98.3 4.5E-07 9.8E-12 74.9 3.2 45 6-50 758-802 (1123)
108 KOG0920|consensus 98.2 4.6E-07 1E-11 73.2 1.8 62 2-64 468-547 (924)
109 KOG0925|consensus 98.1 1.6E-06 3.5E-11 66.2 3.0 60 4-64 313-390 (699)
110 TIGR01054 rgy reverse gyrase. 98.1 1.9E-06 4.1E-11 71.6 3.4 32 2-33 373-409 (1171)
111 COG0556 UvrB Helicase subunit 98.1 6.5E-06 1.4E-10 63.5 4.7 58 2-60 494-556 (663)
112 KOG0952|consensus 98.0 1.8E-05 4E-10 64.7 6.5 85 2-87 420-517 (1230)
113 PRK12904 preprotein translocas 98.0 6.6E-06 1.4E-10 66.2 3.7 60 3-62 477-574 (830)
114 KOG0951|consensus 98.0 9.3E-06 2E-10 67.5 4.5 85 2-86 631-727 (1674)
115 COG1203 CRISPR-associated heli 97.9 6.5E-06 1.4E-10 65.6 1.7 56 3-61 493-550 (733)
116 COG1202 Superfamily II helicas 97.8 1.9E-06 4E-11 67.1 -1.4 59 2-61 488-553 (830)
117 PRK12903 secA preprotein trans 97.6 5.1E-05 1.1E-09 61.4 3.0 58 5-62 475-540 (925)
118 PRK12326 preprotein translocas 97.5 5.9E-05 1.3E-09 60.1 2.1 58 5-62 476-548 (764)
119 PRK13107 preprotein translocas 97.5 0.00012 2.6E-09 59.5 3.7 56 7-62 500-592 (908)
120 PRK13104 secA preprotein trans 97.4 0.00016 3.4E-09 58.9 3.3 57 6-62 494-588 (896)
121 PRK12901 secA preprotein trans 97.3 0.00025 5.4E-09 58.4 3.3 57 6-62 678-742 (1112)
122 PRK12899 secA preprotein trans 97.2 0.00026 5.6E-09 57.9 3.0 58 5-62 617-682 (970)
123 PRK13103 secA preprotein trans 97.1 0.00028 6E-09 57.5 2.3 58 5-62 498-592 (913)
124 PF13871 Helicase_C_4: Helicas 96.4 0.0045 9.7E-08 44.5 3.8 51 1-51 58-116 (278)
125 TIGR01407 dinG_rel DnaQ family 96.3 0.0092 2E-07 48.6 5.3 74 2-75 723-829 (850)
126 PRK14873 primosome assembly pr 96.2 0.01 2.2E-07 47.3 4.9 71 2-78 469-555 (665)
127 smart00492 HELICc3 helicase su 96.1 0.0074 1.6E-07 39.1 3.1 28 6-33 50-79 (141)
128 TIGR00348 hsdR type I site-spe 95.9 0.014 3.1E-07 46.4 4.6 56 3-59 590-649 (667)
129 smart00491 HELICc2 helicase su 95.7 0.011 2.5E-07 38.2 3.0 54 6-59 49-137 (142)
130 PF13307 Helicase_C_2: Helicas 95.7 0.011 2.4E-07 39.1 2.9 58 3-60 58-149 (167)
131 TIGR02562 cas3_yersinia CRISPR 95.6 0.0047 1E-07 51.3 1.0 45 3-50 837-881 (1110)
132 KOG0390|consensus 95.6 0.01 2.3E-07 47.9 2.8 55 7-61 651-707 (776)
133 CHL00122 secA preprotein trans 95.2 0.015 3.3E-07 47.5 2.7 24 39-62 609-632 (870)
134 PRK08074 bifunctional ATP-depe 95.1 0.041 8.9E-07 45.4 4.8 73 3-75 803-908 (928)
135 KOG0387|consensus 95.0 0.023 5E-07 46.1 3.1 57 7-63 602-660 (923)
136 COG4889 Predicted helicase [Ge 94.8 0.013 2.8E-07 48.5 1.2 56 4-59 528-586 (1518)
137 KOG0385|consensus 94.7 0.034 7.4E-07 45.2 3.3 60 5-64 541-602 (971)
138 COG1199 DinG Rad3-related DNA 94.5 0.044 9.5E-07 43.2 3.4 67 6-72 530-629 (654)
139 PRK11747 dinG ATP-dependent DN 94.5 0.051 1.1E-06 43.6 3.8 59 3-61 584-674 (697)
140 KOG1015|consensus 94.3 0.065 1.4E-06 44.8 4.1 57 6-62 1220-1278(1567)
141 PRK07246 bifunctional ATP-depe 93.9 0.13 2.8E-06 42.1 5.0 73 3-75 693-798 (820)
142 COG4096 HsdR Type I site-speci 93.8 0.016 3.5E-07 47.0 -0.1 44 5-48 482-525 (875)
143 KOG0384|consensus 93.7 0.11 2.4E-06 44.0 4.5 61 3-63 751-813 (1373)
144 KOG1513|consensus 93.2 0.052 1.1E-06 44.5 1.8 50 1-50 854-911 (1300)
145 KOG0388|consensus 92.8 0.2 4.3E-06 40.9 4.4 57 5-61 1096-1154(1185)
146 KOG0701|consensus 92.2 0.013 2.7E-07 50.6 -3.0 45 4-48 354-398 (1606)
147 KOG0921|consensus 91.6 0.14 3.1E-06 42.5 2.4 63 2-65 698-778 (1282)
148 COG0553 HepA Superfamily II DN 91.2 0.14 3E-06 41.0 2.0 58 5-62 764-823 (866)
149 KOG0389|consensus 91.2 1.1 2.4E-05 36.8 7.0 71 6-76 831-904 (941)
150 TIGR03117 cas_csf4 CRISPR-asso 91.0 0.46 1E-05 38.0 4.6 59 3-61 521-616 (636)
151 TIGR00596 rad1 DNA repair prot 90.9 0.53 1.1E-05 38.7 5.0 58 9-69 431-522 (814)
152 KOG1000|consensus 90.8 0.29 6.2E-06 38.4 3.3 45 9-53 549-593 (689)
153 COG1110 Reverse gyrase [DNA re 90.0 0.31 6.8E-06 40.9 3.0 32 2-33 381-417 (1187)
154 TIGR00604 rad3 DNA repair heli 89.6 0.59 1.3E-05 37.5 4.3 55 5-59 583-672 (705)
155 KOG0391|consensus 88.5 0.99 2.1E-05 39.0 4.8 56 5-64 1329-1390(1958)
156 PF10593 Z1: Z1 domain; Inter 88.3 1.3 2.7E-05 31.2 4.8 67 4-70 135-202 (239)
157 PF06862 DUF1253: Protein of u 87.9 0.81 1.7E-05 35.1 3.8 73 2-74 348-428 (442)
158 COG0653 SecA Preprotein transl 86.0 0.25 5.3E-06 40.5 0.2 55 6-61 479-545 (822)
159 KOG0386|consensus 84.5 0.83 1.8E-05 38.4 2.5 51 5-55 780-830 (1157)
160 KOG1016|consensus 71.2 6.7 0.00015 32.9 3.9 94 6-99 792-895 (1387)
161 KOG0336|consensus 71.1 7.3 0.00016 30.3 3.9 43 41-83 555-597 (629)
162 PRK15483 type III restriction- 70.9 2.9 6.3E-05 35.2 1.9 45 4-48 501-545 (986)
163 KOG0392|consensus 70.3 6.8 0.00015 34.1 3.8 59 5-63 1395-1456(1549)
164 COG3587 Restriction endonuclea 67.8 8.3 0.00018 32.3 3.8 45 4-48 483-527 (985)
165 cd00068 GGL G protein gamma su 61.8 13 0.00029 20.2 2.9 19 80-98 18-36 (57)
166 COG3615 TehB Uncharacterized p 58.9 13 0.00027 22.8 2.6 41 1-44 43-83 (99)
167 PRK12902 secA preprotein trans 58.3 4.7 0.0001 33.8 0.9 24 39-62 666-689 (939)
168 PRK12902 secA preprotein trans 55.2 6.4 0.00014 33.0 1.2 16 6-21 491-506 (939)
169 KOG1133|consensus 54.9 6.7 0.00014 32.1 1.2 48 13-60 698-779 (821)
170 PF00631 G-gamma: GGL domain; 47.2 20 0.00043 20.0 2.1 19 83-101 24-42 (68)
171 KOG2281|consensus 44.7 31 0.00067 28.4 3.4 39 7-45 328-366 (867)
172 TIGR01054 rgy reverse gyrase. 43.8 63 0.0014 28.1 5.3 30 33-62 515-548 (1171)
173 KOG0330|consensus 43.7 33 0.00073 26.5 3.3 36 41-76 390-425 (476)
174 KOG1123|consensus 43.7 11 0.00025 30.0 0.9 47 3-49 588-635 (776)
175 KOG0701|consensus 42.3 17 0.00036 32.5 1.7 45 3-47 720-764 (1606)
176 KOG0951|consensus 39.1 52 0.0011 29.3 4.0 70 3-77 1430-1510(1674)
177 PRK09401 reverse gyrase; Revie 38.5 37 0.00079 29.5 3.2 30 33-62 517-550 (1176)
178 COG0610 Type I site-specific r 37.4 1.1E+02 0.0025 26.0 5.8 55 4-59 593-651 (962)
179 PF04308 DUF458: Protein of un 34.4 48 0.001 21.7 2.6 15 2-16 16-30 (144)
180 PF02399 Herpes_ori_bp: Origin 34.3 21 0.00047 29.7 1.2 50 3-52 325-380 (824)
181 KOG0081|consensus 33.2 1.6E+02 0.0034 20.1 5.6 71 16-98 42-125 (219)
182 PF14824 Sirohm_synth_M: Siroh 30.2 47 0.001 15.8 1.5 11 2-12 2-12 (30)
183 PF10357 Kin17_mid: Domain of 30.2 14 0.0003 23.7 -0.4 44 22-65 50-98 (127)
184 KOG2340|consensus 28.6 56 0.0012 26.4 2.5 72 2-73 600-680 (698)
185 PF02827 PKI: cAMP-dependent p 28.4 20 0.00043 20.8 0.1 9 41-49 12-20 (74)
186 smart00224 GGL G protein gamma 28.2 68 0.0015 17.7 2.2 19 80-98 18-36 (63)
187 PF10657 RC-P840_PscD: Photosy 27.5 65 0.0014 20.7 2.3 30 1-30 71-106 (144)
188 PF10908 DUF2778: Protein of u 23.7 84 0.0018 19.9 2.3 28 46-73 85-112 (120)
189 PRK14701 reverse gyrase; Provi 23.4 87 0.0019 28.4 3.0 30 33-62 494-527 (1638)
190 COG1110 Reverse gyrase [DNA re 23.2 69 0.0015 27.8 2.3 30 33-62 527-560 (1187)
191 PF12761 End3: Actin cytoskele 22.7 47 0.001 22.9 1.0 13 36-48 68-80 (195)
192 PHA03371 circ protein; Provisi 21.5 2.1E+02 0.0045 20.4 4.0 33 13-45 29-75 (240)
No 1
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.87 E-value=2.1e-22 Score=161.96 Aligned_cols=97 Identities=43% Similarity=0.743 Sum_probs=84.0
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcccchh----
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTK---- 77 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---- 77 (101)
+|+++|||||++++||||+|+|++|||||+|.+++.|+||+|||||.|..+.|++|+...|...+..++.....+.
T Consensus 728 ~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~ 807 (1195)
T PLN03137 728 KDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMA 807 (1195)
T ss_pred cCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchhh
Confidence 6899999999999999999999999999999999999999999999999999999999999988888886532211
Q ss_pred ---------HHHHHHHHHHHHHHHHHHhcC
Q psy7959 78 ---------REQLELKFKNYLSMLEYCEQV 98 (101)
Q Consensus 78 ---------~~~~~~~~~~l~~m~~~~e~~ 98 (101)
....+...+++.+|+.||++.
T Consensus 808 ~~~~r~~~s~~~~e~~~~~L~~m~~yce~~ 837 (1195)
T PLN03137 808 MGYNRMASSGRILETNTENLLRMVSYCENE 837 (1195)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHhCh
Confidence 112345678899999999974
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.5e-21 Score=149.30 Aligned_cols=97 Identities=41% Similarity=0.766 Sum_probs=88.0
Q ss_pred CCCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcccchhHHH
Q psy7959 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQ 80 (101)
Q Consensus 1 ~~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (101)
+.++++|+|||.+++||||.|||++|||+|+|.++++|+|.+|||||+|..+.|++++.+.|.....+++....+ ....
T Consensus 277 ~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~-~~~~ 355 (590)
T COG0514 277 LNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP-DEEQ 355 (590)
T ss_pred hcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcc-hHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999898888665 3335
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy7959 81 LELKFKNYLSMLEYCEQV 98 (101)
Q Consensus 81 ~~~~~~~l~~m~~~~e~~ 98 (101)
......+++.|..||++.
T Consensus 356 ~~~~~~kl~~~~~~~e~~ 373 (590)
T COG0514 356 KQIELAKLRQMIAYCETQ 373 (590)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 666778899999999976
No 3
>KOG0330|consensus
Probab=99.84 E-value=9.9e-22 Score=143.60 Aligned_cols=70 Identities=19% Similarity=0.317 Sum_probs=64.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|..+||||||+++||+|+|+|++|||||+|.+..+|+||+||+||.|.+|.+|++++..|.+.++.+-.
T Consensus 348 ~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~ 417 (476)
T KOG0330|consen 348 AGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEH 417 (476)
T ss_pred ccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHH
Confidence 4778999999999999999999999999999999999999999999999999999999988876655443
No 4
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.84 E-value=3.9e-21 Score=148.51 Aligned_cols=95 Identities=34% Similarity=0.668 Sum_probs=82.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcccchhHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQL 81 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (101)
+|+++|||||+++++|+|+|+|++|||+|+|.+.++|+||+||+||.|..+.+++++++.|...++.++........ .
T Consensus 284 ~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~~~~--~ 361 (607)
T PRK11057 284 RDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQQ--Q 361 (607)
T ss_pred CCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCcHHH--H
Confidence 58899999999999999999999999999999999999999999999999999999999999888888877654432 2
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy7959 82 ELKFKNYLSMLEYCEQV 98 (101)
Q Consensus 82 ~~~~~~l~~m~~~~e~~ 98 (101)
......+..|..||++.
T Consensus 362 ~~~~~~l~~~~~~~~~~ 378 (607)
T PRK11057 362 DIERHKLNAMGAFAEAQ 378 (607)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33445778889998854
No 5
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=7.4e-21 Score=143.10 Aligned_cols=76 Identities=45% Similarity=0.884 Sum_probs=70.7
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcccchh
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTK 77 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 77 (101)
+|+++|||||+++++|+|+|+|++||++++|.+.+.|+||+||+||.|..+.|++++.+.|...++.++.......
T Consensus 274 ~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 349 (470)
T TIGR00614 274 RDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQ 349 (470)
T ss_pred cCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhcCCchh
Confidence 5889999999999999999999999999999999999999999999999999999999999998888887655443
No 6
>KOG0331|consensus
Probab=99.83 E-value=2.9e-21 Score=145.83 Aligned_cols=72 Identities=25% Similarity=0.438 Sum_probs=66.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTD 73 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~ 73 (101)
+|+.+||||||+++||||+|+|++|||||+|.+.++|+||+||+||+|+.|.+++|+...+......+++-.
T Consensus 389 eG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 389 EGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred cCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999988887666655543
No 7
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.83 E-value=1.5e-20 Score=144.63 Aligned_cols=97 Identities=37% Similarity=0.681 Sum_probs=83.9
Q ss_pred CCCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcccchhHHH
Q psy7959 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQ 80 (101)
Q Consensus 1 ~~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (101)
++|+++|||||+++++|+|+|+|++||++++|.+..+|+|++||+||.|..+.|++++...+....+.++........ .
T Consensus 271 ~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~~~-~ 349 (591)
T TIGR01389 271 LYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSEADDD-Y 349 (591)
T ss_pred HcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhccCCcHH-H
Confidence 368899999999999999999999999999999999999999999999999999999999999998888877554433 2
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy7959 81 LELKFKNYLSMLEYCEQV 98 (101)
Q Consensus 81 ~~~~~~~l~~m~~~~e~~ 98 (101)
.......+.+|..||++.
T Consensus 350 ~~~~~~~l~~~~~~~~~~ 367 (591)
T TIGR01389 350 KQIEREKLRAMIAYCETQ 367 (591)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 333466788888998863
No 8
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.82 E-value=1.4e-20 Score=139.74 Aligned_cols=68 Identities=24% Similarity=0.409 Sum_probs=63.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~ 69 (101)
+|+++||||||++++|+|+|+|++||+||+|.+..+|+||+||+||.|+.|.+++|+.+.+...+..+
T Consensus 303 ~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i 370 (423)
T PRK04837 303 RGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAI 370 (423)
T ss_pred cCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998876655544
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.2e-20 Score=143.60 Aligned_cols=71 Identities=28% Similarity=0.461 Sum_probs=63.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcc-cHHHHHHHHHc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH-SKKSLEYVIKT 72 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~-~~~~~~~~~~~ 72 (101)
+|+.+||||||+++||||+|+|++|||||+|.+++.|+||+||+||+|..|.+++|+.+. +...+..+.+.
T Consensus 321 ~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~ 392 (513)
T COG0513 321 DGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKR 392 (513)
T ss_pred cCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999975 66555444433
No 10
>KOG0336|consensus
Probab=99.81 E-value=2.2e-20 Score=137.90 Aligned_cols=71 Identities=24% Similarity=0.424 Sum_probs=66.5
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT 72 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~ 72 (101)
+|+++||||||+++||+|+++|++|+|||+|.+++.|+||+||+||.|+.|.++.|+...|+.....++.-
T Consensus 513 sG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 513 SGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred cCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999998877666554
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.80 E-value=3.6e-20 Score=140.93 Aligned_cols=69 Identities=32% Similarity=0.526 Sum_probs=63.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~ 70 (101)
+|+++|||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|..|.+++|++..+...+..+.
T Consensus 416 ~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 416 VGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred CCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999999988766554443
No 12
>PTZ00110 helicase; Provisional
Probab=99.79 E-value=6.7e-20 Score=140.25 Aligned_cols=71 Identities=23% Similarity=0.462 Sum_probs=65.0
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT 72 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~ 72 (101)
+|+.+|||||+++++|+|+|+|++|||||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.
T Consensus 425 ~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 425 TGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred cCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999887766555443
No 13
>KOG0352|consensus
Probab=99.79 E-value=1.5e-19 Score=134.11 Aligned_cols=98 Identities=48% Similarity=0.947 Sum_probs=90.2
Q ss_pred CCCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcccchhHH-
Q psy7959 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKRE- 79 (101)
Q Consensus 1 ~~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 79 (101)
|+|++.|++||..++||+|-|+|++||||++|.+.+-|+|.+|||||.|..+.|-++|..+|...+..++.++...+.+
T Consensus 302 M~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklrek 381 (641)
T KOG0352|consen 302 MNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLREK 381 (641)
T ss_pred hcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998887766554
Q ss_pred -----HHHHHHHHHHHHHHHHhcC
Q psy7959 80 -----QLELKFKNYLSMLEYCEQV 98 (101)
Q Consensus 80 -----~~~~~~~~l~~m~~~~e~~ 98 (101)
..+.....+++|++|||..
T Consensus 382 ~~ke~~~k~~I~~F~k~~eFCE~~ 405 (641)
T KOG0352|consen 382 AKKEMQIKSIITGFAKMLEFCESA 405 (641)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHc
Confidence 4567778899999999975
No 14
>KOG0333|consensus
Probab=99.79 E-value=4.3e-20 Score=139.07 Aligned_cols=63 Identities=30% Similarity=0.470 Sum_probs=59.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 64 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~ 64 (101)
.|...||||||+++||+|+|+|.+|||||++++...|.||+||+||+|+.|.+++|+++.+..
T Consensus 565 ~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 565 EGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred hcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 367889999999999999999999999999999999999999999999999999999998854
No 15
>KOG0340|consensus
Probab=99.79 E-value=7.7e-20 Score=132.61 Aligned_cols=68 Identities=21% Similarity=0.325 Sum_probs=63.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~ 69 (101)
++.++||+|||+++||+|+|.|++|||+|+|.++..|+||+||++|+|+.|.+|.+++..|.+.++.+
T Consensus 302 s~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~ai 369 (442)
T KOG0340|consen 302 SNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAI 369 (442)
T ss_pred hcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999998888766544
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.78 E-value=1.7e-19 Score=135.25 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=64.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|+++|||||+++++|+|+|+|++|||||+|.++.+|+||+||+||.|..|.+++++...+...++.+.+
T Consensus 293 ~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~ 362 (456)
T PRK10590 293 SGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEK 362 (456)
T ss_pred cCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999888766555443
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.78 E-value=2.4e-19 Score=133.28 Aligned_cols=69 Identities=30% Similarity=0.454 Sum_probs=63.9
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~ 70 (101)
+|+++||||||++++|+|+|++++|||||+|.+...|+||+||+||.|..|.+++++...|...+..+.
T Consensus 293 ~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 293 DGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred CCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999988876665543
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.78 E-value=2.7e-19 Score=133.99 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=64.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.+++++.+.+...+..+.+
T Consensus 290 ~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 290 NRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred cCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999888766555443
No 19
>KOG0328|consensus
Probab=99.77 E-value=2.5e-19 Score=127.26 Aligned_cols=70 Identities=24% Similarity=0.418 Sum_probs=65.4
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|+.+||++||+.+||+|+|+|++|||||+|.+.+.|+||+||+||.|+.|.+|.|+...|.+.+..+-+
T Consensus 314 sg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq 383 (400)
T KOG0328|consen 314 SGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQ 383 (400)
T ss_pred cCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999887765544
No 20
>PTZ00424 helicase 45; Provisional
Probab=99.77 E-value=2.8e-19 Score=131.20 Aligned_cols=70 Identities=26% Similarity=0.432 Sum_probs=64.9
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|+++|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|..|.++.++++.+.+.+..+.+
T Consensus 315 ~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~ 384 (401)
T PTZ00424 315 SGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIER 384 (401)
T ss_pred cCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999888776665544
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.77 E-value=3.9e-19 Score=133.74 Aligned_cols=68 Identities=26% Similarity=0.450 Sum_probs=62.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~ 69 (101)
+|+++|||||+++++|+|++++++||++|+|.+..+|+||+||+||.|..|.+++++.+.|...+..+
T Consensus 383 ~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~ 450 (475)
T PRK01297 383 EGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEI 450 (475)
T ss_pred CCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999987765544433
No 22
>KOG0342|consensus
Probab=99.76 E-value=5e-19 Score=132.12 Aligned_cols=72 Identities=24% Similarity=0.359 Sum_probs=66.1
Q ss_pred ceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcccc
Q psy7959 4 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTS 75 (101)
Q Consensus 4 ~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 75 (101)
+.=||||||+++||+|+|+|++||++|.|.++.+|+||+||+||.|..|.+++++.+++...++++.+-...
T Consensus 380 esgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~lpl~ 451 (543)
T KOG0342|consen 380 ESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKLPLE 451 (543)
T ss_pred ccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhCCCc
Confidence 345899999999999999999999999999999999999999999999999999999999988888754443
No 23
>KOG0350|consensus
Probab=99.76 E-value=1.9e-18 Score=129.59 Aligned_cols=74 Identities=27% Similarity=0.507 Sum_probs=69.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcccc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTS 75 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 75 (101)
+|++++|||||+++||+|+.+|+.|||||+|.+..+|+||+||++|+|+.|.|+++....+...+.++++....
T Consensus 481 ~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 481 KGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred cCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999888888876544
No 24
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.76 E-value=6.9e-19 Score=135.36 Aligned_cols=69 Identities=22% Similarity=0.380 Sum_probs=63.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~ 70 (101)
+|+++||||||++++|+|+|+|++|||||+|.++.+|+||+||+||.|..|.+++|+.+.+...+..+.
T Consensus 305 ~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~ 373 (572)
T PRK04537 305 KGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIE 373 (572)
T ss_pred cCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999999987766555443
No 25
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.75 E-value=8.8e-19 Score=135.99 Aligned_cols=70 Identities=21% Similarity=0.480 Sum_probs=64.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|+++||||||++++|+|+|+|++|||||+|.++.+|+||+||+||.|+.|.+++++.+.+...++.+.+
T Consensus 293 ~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred CCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999887666655543
No 26
>KOG0335|consensus
Probab=99.75 E-value=1e-18 Score=130.73 Aligned_cols=65 Identities=29% Similarity=0.497 Sum_probs=60.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSL 66 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~ 66 (101)
+|.+.+||||++++||+|+|+|++||+||+|.+..+|+||+||+||.|+.|.++.|++..+....
T Consensus 385 ~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~ 449 (482)
T KOG0335|consen 385 NGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIA 449 (482)
T ss_pred cCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhH
Confidence 58899999999999999999999999999999999999999999999999999999996554433
No 27
>KOG0326|consensus
Probab=99.75 E-value=8.7e-19 Score=126.23 Aligned_cols=71 Identities=24% Similarity=0.348 Sum_probs=65.7
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT 72 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~ 72 (101)
+|.++.|||||.+-||+|+++|++|||||+|+++++|.||+||+||.|.-|.+|.+++..|...+..+..+
T Consensus 370 ~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~e 440 (459)
T KOG0326|consen 370 NGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQE 440 (459)
T ss_pred ccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998887766555443
No 28
>KOG0338|consensus
Probab=99.75 E-value=2e-18 Score=129.96 Aligned_cols=72 Identities=31% Similarity=0.488 Sum_probs=68.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTD 73 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~ 73 (101)
+++++||||||+++||+|++.|..||||++|.+...|+||+||+.|+|+.|.+|+|+...+...++.++++.
T Consensus 474 ~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 474 KEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred hccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 467999999999999999999999999999999999999999999999999999999999999999888883
No 29
>KOG0345|consensus
Probab=99.74 E-value=1.9e-18 Score=128.81 Aligned_cols=65 Identities=18% Similarity=0.382 Sum_probs=59.1
Q ss_pred eEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHH
Q psy7959 6 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 70 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~ 70 (101)
-+|+|||+++||+|+|+|++||+||.|.++++|+||+||+||.|+.|.+|+|+.+.+......+-
T Consensus 309 ~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~ 373 (567)
T KOG0345|consen 309 GVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLR 373 (567)
T ss_pred ceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999997665544433
No 30
>KOG0351|consensus
Probab=99.74 E-value=2.4e-18 Score=137.47 Aligned_cols=97 Identities=38% Similarity=0.728 Sum_probs=86.4
Q ss_pred CCCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcccchhHHH
Q psy7959 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQ 80 (101)
Q Consensus 1 ~~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (101)
|.++++|+|||-++++|+|.|+|++||||.+|++.+.|+|.+|||||.|..+.|++|+...|...++.++.... .....
T Consensus 532 ~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~-~~~~~ 610 (941)
T KOG0351|consen 532 MSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGN-RLSGV 610 (941)
T ss_pred hcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHccc-cccch
Confidence 57889999999999999999999999999999999999999999999999999999999999999999998882 22222
Q ss_pred HH-HHHHHHHHHHHHHhcC
Q psy7959 81 LE-LKFKNYLSMLEYCEQV 98 (101)
Q Consensus 81 ~~-~~~~~l~~m~~~~e~~ 98 (101)
.. ....++.+++.||++.
T Consensus 611 ~~~~~~~~l~~~~~yCen~ 629 (941)
T KOG0351|consen 611 KKFTRLLELVQVVTYCENE 629 (941)
T ss_pred hhccchhhHHHHHHhhcCc
Confidence 22 5678899999999975
No 31
>KOG0344|consensus
Probab=99.74 E-value=1.7e-18 Score=131.13 Aligned_cols=67 Identities=25% Similarity=0.427 Sum_probs=63.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEY 68 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~ 68 (101)
.|+++||+||++++||+|+.+++.|||||+|.+..+|+||+||+||+|+.|.+++||++.+.+.++.
T Consensus 436 ~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~ 502 (593)
T KOG0344|consen 436 IGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRS 502 (593)
T ss_pred ccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhh
Confidence 5899999999999999999999999999999999999999999999999999999999988775543
No 32
>KOG0332|consensus
Probab=99.72 E-value=2.8e-18 Score=125.31 Aligned_cols=61 Identities=26% Similarity=0.435 Sum_probs=57.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCC------CCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMP------SSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p------~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
.|+.+|||+|++++||+|++.|++|||||+| .+++.|+||+||+||+|+.|.++.++...+
T Consensus 378 ~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 378 EGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred cCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccC
Confidence 5889999999999999999999999999999 468899999999999999999999998764
No 33
>KOG0341|consensus
Probab=99.72 E-value=1.3e-18 Score=127.99 Aligned_cols=61 Identities=26% Similarity=0.523 Sum_probs=58.5
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
.|+.+||||||++++|+|+|++.+|||||+|..+++|+||+||+||.|+.|.+.+|.+...
T Consensus 469 ~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 469 AGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred cCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 4789999999999999999999999999999999999999999999999999999999764
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.71 E-value=5.4e-18 Score=133.61 Aligned_cols=60 Identities=27% Similarity=0.480 Sum_probs=57.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH 61 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~ 61 (101)
+|++++|||||++++|+|++++++||++|+|.+.++|+||+||+||.|+.|.++++....
T Consensus 327 ~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 327 DGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred cCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 689999999999999999999999999999999999999999999999999999998744
No 35
>KOG0348|consensus
Probab=99.68 E-value=2e-17 Score=125.10 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=62.5
Q ss_pred eEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcc
Q psy7959 6 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTD 73 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~ 73 (101)
-||+|||+++||+|+|+|++||+||.|.++.+|+||+||++|.|..|.+++|+.+.|.+.+..+.+..
T Consensus 499 ~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 499 AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 49999999999999999999999999999999999999999999999999999999988665554443
No 36
>KOG0343|consensus
Probab=99.67 E-value=7.6e-17 Score=122.42 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=62.0
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHH-HHHHHHHccc
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK-SLEYVIKTDT 74 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~-~~~~~~~~~~ 74 (101)
.-||+|||+++||+|+|.|++||++|+|.++.+|+||+||++|....|.+++++.+.+.+ .+..+-+..+
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I 436 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKI 436 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCC
Confidence 458999999999999999999999999999999999999999999999999999999854 4555544433
No 37
>KOG0347|consensus
Probab=99.67 E-value=1.1e-16 Score=121.50 Aligned_cols=68 Identities=25% Similarity=0.368 Sum_probs=62.5
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHc
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT 72 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~ 72 (101)
--||+|||+++||+|+|+|.+||||-.|.+..-|+||+||++|+++.|.++.++.+.+...+.++.+.
T Consensus 514 ~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~kt 581 (731)
T KOG0347|consen 514 SGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKT 581 (731)
T ss_pred CeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999987766655543
No 38
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.59 E-value=2.9e-16 Score=91.58 Aligned_cols=48 Identities=44% Similarity=0.615 Sum_probs=45.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCC
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 49 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~ 49 (101)
+|+.+|||||+++++|+|+|++++||+++.|++...|.|++||+||.|
T Consensus 31 ~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 31 SGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 466799999999999999999999999999999999999999999976
No 39
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.58 E-value=1.2e-15 Score=119.14 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=55.7
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeC---CCC---------CccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWG---MPS---------SIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~---~p~---------~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
+|+.+||||||++++|+|+|+|++||++| .|. |.++|.||+||+||. ++|.|+.++++.+.
T Consensus 444 ~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 444 SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 57899999999999999999999999999 564 788999999999999 79999999987764
No 40
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.56 E-value=7.5e-15 Score=110.41 Aligned_cols=63 Identities=27% Similarity=0.350 Sum_probs=58.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 65 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~ 65 (101)
+|+++|||||+++++|+|+|++++||.|+.-.|.-.++||.||+||. ++|.++++++.++.+.
T Consensus 423 ~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrde 485 (542)
T COG1111 423 KGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDE 485 (542)
T ss_pred cCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHH
Confidence 68999999999999999999999999999989999999999999998 7899999998885443
No 41
>KOG0327|consensus
Probab=99.56 E-value=3.2e-15 Score=109.09 Aligned_cols=71 Identities=30% Similarity=0.440 Sum_probs=66.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT 72 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~ 72 (101)
+|..+|||+|+.+++|+|+.+++.||||++|...++|+||+||+||.|.+|.++.+++..+...++.+-+.
T Consensus 311 ~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~ 381 (397)
T KOG0327|consen 311 SGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKF 381 (397)
T ss_pred cCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999888877766644
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.53 E-value=9e-15 Score=113.71 Aligned_cols=58 Identities=29% Similarity=0.481 Sum_probs=54.5
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCC-CccceeeecceeccCCCcceEEEeeC
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGLQSYCRIYHS 59 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~-~~~~~~qr~GR~gR~~~~~~~i~~~~ 59 (101)
+|+.+|||||+++++|+|+|++++||+++.|. +.++|.||+||+||.|..|.|++++.
T Consensus 506 ~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 506 EGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 58899999999999999999999999999885 68889999999999999999999983
No 43
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=9.4e-15 Score=113.66 Aligned_cols=59 Identities=25% Similarity=0.175 Sum_probs=55.0
Q ss_pred ceeEEEEccccccccCCC---Ccc-----EEEEeCCCCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 4 EINVITATISFGMGIDRQ---NVR-----FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 4 ~~~vlv~T~~~~~G~d~~---~v~-----~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
..+|+||||+++||+|++ +|+ +||++++|.+...|.||+||+||.|..|.++.+++..|
T Consensus 521 ~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 521 RGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred CCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 457999999999999999 676 99999999999999999999999999999999999765
No 44
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.51 E-value=2.1e-14 Score=112.58 Aligned_cols=58 Identities=31% Similarity=0.496 Sum_probs=54.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCC-CccceeeecceeccCCCcceEEEeeC
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGLQSYCRIYHS 59 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~-~~~~~~qr~GR~gR~~~~~~~i~~~~ 59 (101)
+|+++|||||+++++|+|+|++++||+++.|. +.++|.||.||+||.|..|.|++++.
T Consensus 529 ~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 529 AGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 58899999999999999999999999999986 67889999999999999999999995
No 45
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.51 E-value=6e-15 Score=117.39 Aligned_cols=64 Identities=27% Similarity=0.352 Sum_probs=56.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCC------------------ccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSS------------------IPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~------------------~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
+|+.+||||||++++|+|+|+|++||++|+|.. .++|.||+||+||. .+|.|+.++++.++
T Consensus 260 ~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 260 QGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred cCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 578999999999999999999999999998752 34588999999999 79999999998766
Q ss_pred HHH
Q psy7959 64 KSL 66 (101)
Q Consensus 64 ~~~ 66 (101)
..+
T Consensus 339 ~~l 341 (819)
T TIGR01970 339 QRL 341 (819)
T ss_pred Hhh
Confidence 543
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.50 E-value=2e-14 Score=115.16 Aligned_cols=48 Identities=38% Similarity=0.613 Sum_probs=46.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCC
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 49 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~ 49 (101)
+|+++|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.+
T Consensus 338 ~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 338 RGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred cCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCC
Confidence 588999999999999999999999999999999999999999999874
No 47
>KOG0346|consensus
Probab=99.49 E-value=3.3e-14 Score=105.85 Aligned_cols=51 Identities=22% Similarity=0.400 Sum_probs=47.9
Q ss_pred cccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHH
Q psy7959 14 FGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 64 (101)
Q Consensus 14 ~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~ 64 (101)
++||+|+.+|..|+|||+|.++.+|+||+||++|.++.|.++.|+.+.+..
T Consensus 363 VsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 363 VSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred hhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 348999999999999999999999999999999999999999999988765
No 48
>KOG0353|consensus
Probab=99.48 E-value=5.4e-14 Score=103.94 Aligned_cols=88 Identities=41% Similarity=0.781 Sum_probs=74.5
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceee-----------------------------------------
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQ----------------------------------------- 40 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~q----------------------------------------- 40 (101)
.|++.|+|||-++++|+|-|+|++|||..+|++.++|+|
T Consensus 365 a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfs 444 (695)
T KOG0353|consen 365 AGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFS 444 (695)
T ss_pred ccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeec
Confidence 589999999999999999999999999999999999999
Q ss_pred --ecceeccCCCcceEEEeeCcccHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHhc
Q psy7959 41 --ESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCEQ 97 (101)
Q Consensus 41 --r~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~e~ 97 (101)
.+||+||.+....||++|...|...+..+....... ..++-+|++||..
T Consensus 445 ekesgragrd~~~a~cilyy~~~difk~ssmv~~e~~g--------~q~ly~mv~y~~d 495 (695)
T KOG0353|consen 445 EKESGRAGRDDMKADCILYYGFADIFKISSMVQMENTG--------IQKLYEMVRYAAD 495 (695)
T ss_pred chhccccccCCCcccEEEEechHHHHhHHHHHHHHhhh--------HHHHHHHHHHHhh
Confidence 899999999999999999988887777666544322 2345567777654
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.48 E-value=2.3e-14 Score=115.18 Aligned_cols=60 Identities=25% Similarity=0.421 Sum_probs=55.4
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCC-CccceeeecceeccCCCcceEEEeeCcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGLQSYCRIYHSEH 61 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~-~~~~~~qr~GR~gR~~~~~~~i~~~~~~ 61 (101)
+|+++|||||+++++|+|+|++++||+++.|. +.++|+||+||+||.|+.|.|++++.+.
T Consensus 710 ~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 710 KGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 68999999999999999999999999999864 6789999999999999999999998653
No 50
>KOG4284|consensus
Probab=99.47 E-value=3.6e-14 Score=109.73 Aligned_cols=60 Identities=27% Similarity=0.443 Sum_probs=56.8
Q ss_pred ceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 4 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 4 ~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
.++|||+||.-+||+|-++|++|||.|.|.+-..|.||+|||||+|..|.+|+|+.....
T Consensus 322 ~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 322 RVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred eEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 479999999999999999999999999999999999999999999999999999987643
No 51
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.47 E-value=3e-14 Score=113.43 Aligned_cols=63 Identities=27% Similarity=0.334 Sum_probs=55.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCC------------------CccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPS------------------SIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~------------------~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
+|+.+||||||++++|+|+++|++||++++|. |.++|.||+||+||. .+|.|+.++++.++
T Consensus 263 ~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 263 AGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred CCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 57899999999999999999999999988764 335799999999999 69999999997766
Q ss_pred HH
Q psy7959 64 KS 65 (101)
Q Consensus 64 ~~ 65 (101)
..
T Consensus 342 ~~ 343 (812)
T PRK11664 342 ER 343 (812)
T ss_pred hh
Confidence 53
No 52
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=3.1e-14 Score=112.68 Aligned_cols=58 Identities=28% Similarity=0.217 Sum_probs=54.9
Q ss_pred eeEEEEccccccccCC---CCcc-----EEEEeCCCCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 5 INVITATISFGMGIDR---QNVR-----FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~---~~v~-----~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
-+|+||||+++||+|+ ++|. +||++++|.+...|.||+||+||.|..|.++.+++..|
T Consensus 477 g~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 477 GAVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred CeEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 3799999999999999 6998 99999999999999999999999999999999998765
No 53
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.45 E-value=4.3e-14 Score=115.95 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=56.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC---------------C---CCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM---------------P---SSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~---------------p---~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
.|..+||||||++++|+|+|+|++||++|+ | .|.++|.||+||+||. .+|.|+.++++.++
T Consensus 335 ~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 335 HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 367899999999999999999999999873 3 4568899999999999 79999999998776
Q ss_pred HHH
Q psy7959 64 KSL 66 (101)
Q Consensus 64 ~~~ 66 (101)
..+
T Consensus 414 ~~~ 416 (1294)
T PRK11131 414 LSR 416 (1294)
T ss_pred Hhh
Confidence 644
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.44 E-value=1.2e-13 Score=114.65 Aligned_cols=58 Identities=31% Similarity=0.408 Sum_probs=50.7
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCC-CcceEEEeeC
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG-LQSYCRIYHS 59 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~-~~~~~i~~~~ 59 (101)
+|++++||||+++++|||+++|++||+++.|.+.++|+||+||+||.. ..+.++++..
T Consensus 325 ~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 325 SGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred hCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 689999999999999999999999999999999999999999999973 3355554433
No 55
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.44 E-value=8.2e-14 Score=112.17 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=51.6
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeC
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHS 59 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~ 59 (101)
|..+|||||+++++|+|++.+++|||||+|+++..|.||+||+||.|+.+.+.+++.
T Consensus 545 ~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 545 DGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred CCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 568999999999999999999999999999999999999999999998876544443
No 56
>KOG0334|consensus
Probab=99.43 E-value=9.5e-14 Score=110.75 Aligned_cols=71 Identities=24% Similarity=0.422 Sum_probs=64.5
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT 72 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~ 72 (101)
+|.+++||||+.+++|+|+.++.+|||||+|.-..+|+||+||+||.|+.|.|++|..+.+......+.+.
T Consensus 661 ~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~a 731 (997)
T KOG0334|consen 661 NGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKA 731 (997)
T ss_pred ccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999776665555544
No 57
>PRK13766 Hef nuclease; Provisional
Probab=99.41 E-value=4.6e-13 Score=105.82 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=56.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 65 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~ 65 (101)
+|+.+|||||+++++|+|+|++++||+||.|++..+|+||+||+||.+. +.++.++..+..+.
T Consensus 421 ~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~ee 483 (773)
T PRK13766 421 AGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTRDE 483 (773)
T ss_pred cCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCChHH
Confidence 4789999999999999999999999999999999999999999999864 77777777665544
No 58
>PRK02362 ski2-like helicase; Provisional
Probab=99.40 E-value=1.9e-13 Score=107.79 Aligned_cols=73 Identities=26% Similarity=0.404 Sum_probs=60.0
Q ss_pred CCceeEEEEccccccccCCCCccEEEE----eC-----CCCCccceeeecceeccCCCc--ceEEEeeCccc-H-HHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH----WG-----MPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEHS-K-KSLEY 68 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~----~~-----~p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~~-~-~~~~~ 68 (101)
+|.++|||||+++++|+|+|.+++||+ || .|.+..+|.||+|||||.|.+ |.+++++...+ . +.++.
T Consensus 327 ~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~ 406 (737)
T PRK02362 327 DRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFER 406 (737)
T ss_pred cCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHH
Confidence 689999999999999999999999997 66 588999999999999999865 88999987653 2 23445
Q ss_pred HHHccc
Q psy7959 69 VIKTDT 74 (101)
Q Consensus 69 ~~~~~~ 74 (101)
++....
T Consensus 407 ~l~~~~ 412 (737)
T PRK02362 407 YIWADP 412 (737)
T ss_pred HHhCCC
Confidence 554333
No 59
>KOG0329|consensus
Probab=99.40 E-value=4.3e-14 Score=99.81 Aligned_cols=56 Identities=30% Similarity=0.529 Sum_probs=53.5
Q ss_pred EEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 8 ITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 8 lv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
+|||+.++||+|+..++.|+|||+|.+..+|+||+|||||.|..|.+|+|++..+.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 89999999999999999999999999999999999999999999999999987643
No 60
>KOG0948|consensus
Probab=99.40 E-value=2.8e-13 Score=105.96 Aligned_cols=98 Identities=24% Similarity=0.367 Sum_probs=85.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEE----eC----CCCCccceeeecceeccCCCc--ceEEEeeCcc-cHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH----WG----MPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEH-SKKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~----~~----~p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~-~~~~~~~~~ 70 (101)
.|.+++|+||.++++|+++|.-++|+. || ...+.-+|+|++|||||+|.+ |.+|.+++.. +....+.++
T Consensus 470 EGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~ 549 (1041)
T KOG0948|consen 470 EGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDML 549 (1041)
T ss_pred ccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHh
Confidence 478999999999999999998777765 33 256788999999999999964 9999999977 888999999
Q ss_pred HcccchhHHHHHHHHHHHHHHHHHHhcCC
Q psy7959 71 KTDTSTKREQLELKFKNYLSMLEYCEQVP 99 (101)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~m~~~~e~~~ 99 (101)
+++.+.+...+...+.++.++++-.+-.|
T Consensus 550 kG~aD~LnSaFhLtYnMiLNLlRvEei~p 578 (1041)
T KOG0948|consen 550 KGSADPLNSAFHLTYNMILNLLRVEEISP 578 (1041)
T ss_pred cCCCcchhhhhhhHHHHHHHHHHHccCCH
Confidence 99999999999999999999998766554
No 61
>KOG0339|consensus
Probab=99.39 E-value=1.7e-13 Score=103.72 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=66.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTD 73 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~ 73 (101)
++...|||+||++++|+|+++++.|||||+..++..|.||+||+||.|..|.+++++++.|.+....+.++-
T Consensus 516 kk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnL 587 (731)
T KOG0339|consen 516 KKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNL 587 (731)
T ss_pred hcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999999988777777653
No 62
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.39 E-value=4.4e-13 Score=104.79 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=55.9
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeC-----CCCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWG-----MPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~-----~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
.|+++|||||+.+++|+|+|++++|+++| .|.+..+|+||+||+||. ..|.++++++..+.
T Consensus 490 ~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 490 LGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITD 555 (655)
T ss_pred cCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCH
Confidence 58899999999999999999999999988 799999999999999998 68999999887653
No 63
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.38 E-value=1.1e-13 Score=113.33 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=51.0
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC-CCCccceeeecceeccCCCcceEEEeeCc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM-PSSIPAYYQESGRAGRDGLQSYCRIYHSE 60 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~-p~~~~~~~qr~GR~gR~~~~~~~i~~~~~ 60 (101)
+|+++|||||+++++|+|+|++++||..+. ..+.++|+||+||+||.|+.|.|++++..
T Consensus 859 ~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred hcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 589999999999999999999999994432 23456799999999999999999999864
No 64
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.38 E-value=5.5e-13 Score=83.26 Aligned_cols=55 Identities=40% Similarity=0.596 Sum_probs=50.7
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEE
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI 56 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~ 56 (101)
+|..++|++|+++++|+|+|.+++||.++.|++...|.|++||++|.|+.+.+++
T Consensus 76 ~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 76 EGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred cCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEe
Confidence 4568899999999999999999999999999999999999999999998777654
No 65
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.37 E-value=3.2e-13 Score=78.07 Aligned_cols=48 Identities=40% Similarity=0.611 Sum_probs=45.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCC
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 49 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~ 49 (101)
+|..+||++|++++.|+|+++++.||.++.|++...|.|++||++|.|
T Consensus 35 ~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 35 NGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred cCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 366799999999999999999999999999999999999999999975
No 66
>KOG0354|consensus
Probab=99.37 E-value=8.9e-13 Score=103.21 Aligned_cols=56 Identities=32% Similarity=0.463 Sum_probs=52.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeC
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHS 59 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~ 59 (101)
+|+++|||||+++++|+|++.|++||-||...++-.++||.|| ||. ++|.++.+++
T Consensus 472 ~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t 527 (746)
T KOG0354|consen 472 DGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTT 527 (746)
T ss_pred CCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEc
Confidence 5999999999999999999999999999999999999999999 998 5677777777
No 67
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.34 E-value=1.7e-12 Score=101.57 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=53.7
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC-----CCCccceeeecceeccCCCcceEEEeeCcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM-----PSSIPAYYQESGRAGRDGLQSYCRIYHSEH 61 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~-----p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~ 61 (101)
.|++.|||||+.+++|+|+|++++||++|. |.+..+|+||+||+||. ..|.++.+++..
T Consensus 494 ~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 494 LGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred cCCceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 578999999999999999999999999884 78999999999999996 689999999843
No 68
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.33 E-value=4.2e-13 Score=110.31 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=54.7
Q ss_pred ceeEEEEccccccccCCCCccEEEEeCCC------------------CCccceeeecceeccCCCcceEEEeeCcccHHH
Q psy7959 4 EINVITATISFGMGIDRQNVRFVVHWGMP------------------SSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 65 (101)
Q Consensus 4 ~~~vlv~T~~~~~G~d~~~v~~vi~~~~p------------------~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~ 65 (101)
..+|||||++++.|+|+|+|++||++|++ .|.++|.||+||+||.+ +|.|+.+++..++..
T Consensus 330 ~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 330 GRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred CceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 46999999999999999999999999853 35679999999999997 999999999877654
Q ss_pred H
Q psy7959 66 L 66 (101)
Q Consensus 66 ~ 66 (101)
.
T Consensus 409 ~ 409 (1283)
T TIGR01967 409 R 409 (1283)
T ss_pred h
Confidence 3
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.32 E-value=8.9e-13 Score=95.75 Aligned_cols=57 Identities=25% Similarity=0.214 Sum_probs=46.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcc----eEEEeeCcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQS----YCRIYHSEH 61 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~----~~i~~~~~~ 61 (101)
+|..+|||||+++++|+|++ +++||++..| +.+|+||+||+||.|+.. ..+++....
T Consensus 276 ~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 276 KNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred CCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 46789999999999999995 8899998766 679999999999998642 455554433
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.32 E-value=1.2e-12 Score=103.21 Aligned_cols=58 Identities=26% Similarity=0.244 Sum_probs=53.4
Q ss_pred eeEEEEccccccccCCC---------CccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 5 INVITATISFGMGIDRQ---------NVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~---------~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
-+|+||||+++||+|++ ++.+|++++.|..... .||+||+||.|.+|.++.+++..|.
T Consensus 473 g~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 473 GAVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CeEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 47999999999999999 9999999999988777 9999999999999999999987653
No 71
>PRK00254 ski2-like helicase; Provisional
Probab=99.30 E-value=2.2e-12 Score=101.63 Aligned_cols=72 Identities=29% Similarity=0.358 Sum_probs=56.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEE-------eCCCC-CccceeeecceeccCC--CcceEEEeeCccc-HHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH-------WGMPS-SIPAYYQESGRAGRDG--LQSYCRIYHSEHS-KKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~-------~~~p~-~~~~~~qr~GR~gR~~--~~~~~i~~~~~~~-~~~~~~~~ 70 (101)
+|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.+++++...+ .+.+..++
T Consensus 319 ~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~ 398 (720)
T PRK00254 319 EGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYI 398 (720)
T ss_pred CCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHH
Confidence 689999999999999999999999994 45543 5678999999999976 4589999987654 33455554
Q ss_pred Hcc
Q psy7959 71 KTD 73 (101)
Q Consensus 71 ~~~ 73 (101)
.+.
T Consensus 399 ~~~ 401 (720)
T PRK00254 399 FGK 401 (720)
T ss_pred hCC
Confidence 443
No 72
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.29 E-value=1.8e-12 Score=101.92 Aligned_cols=61 Identities=26% Similarity=0.192 Sum_probs=56.3
Q ss_pred CceeEEEEccccccccCCCC-------ccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 3 GEINVITATISFGMGIDRQN-------VRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~-------v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
+...|+|||++++||+|++. ..+||+++.|.+...|.|+.||+||.|.+|.+..+++..|.
T Consensus 452 ~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 452 RKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred CCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 56899999999999999998 45999999999999999999999999999999999987653
No 73
>KOG0337|consensus
Probab=99.27 E-value=4.1e-12 Score=94.41 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=58.7
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHH
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 65 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~ 65 (101)
++..+||.||+++||+|+|-.+.|||||+|.+..-|+||+||+.|+|+.|.++.++.+.+...
T Consensus 310 ~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~y 372 (529)
T KOG0337|consen 310 RKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPY 372 (529)
T ss_pred CccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchh
Confidence 567899999999999999999999999999999999999999999999999999998876543
No 74
>KOG0349|consensus
Probab=99.25 E-value=4.4e-12 Score=95.05 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=58.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 64 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~ 64 (101)
++++++|||||+++||+|+-.+.++||..+|.+..+|+||+||.||+.+-|.+|.++.....+
T Consensus 556 k~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ek 618 (725)
T KOG0349|consen 556 KFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEK 618 (725)
T ss_pred hcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchh
Confidence 467999999999999999999999999999999999999999999999999999998866444
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.23 E-value=1e-11 Score=97.57 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=60.9
Q ss_pred CCceeEEEEccccccccCCCCccEE--EEeCCCCCc----------cceeeecceeccCCCcceEEEeeCcccHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFV--VHWGMPSSI----------PAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~v--i~~~~p~~~----------~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~ 69 (101)
+|+.+|||+|+++++|+|+|+|++| +++|.+.+. ..|+|++||+||.+..|.++......+...++.+
T Consensus 478 ~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 478 RGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred cCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 4789999999999999999999988 456655544 4589999999999999999988776666666666
Q ss_pred HHcccchhH
Q psy7959 70 IKTDTSTKR 78 (101)
Q Consensus 70 ~~~~~~~~~ 78 (101)
...+.....
T Consensus 558 ~~~d~~~f~ 566 (679)
T PRK05580 558 LAQDYDAFA 566 (679)
T ss_pred HhCCHHHHH
Confidence 655554443
No 76
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=4.8e-12 Score=100.24 Aligned_cols=58 Identities=31% Similarity=0.245 Sum_probs=54.3
Q ss_pred eeEEEEccccccccCC---CCcc-----EEEEeCCCCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 5 INVITATISFGMGIDR---QNVR-----FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~---~~v~-----~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
-.|+|||++++||+|+ ++|. +||++++|.+...|.|+.||+||.|.+|.+..+++..|
T Consensus 489 g~VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 489 GAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred ceEEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 4599999999999999 4899 99999999999999999999999999999999998764
No 77
>PRK01172 ski2-like helicase; Provisional
Probab=99.23 E-value=7.3e-12 Score=98.00 Aligned_cols=71 Identities=25% Similarity=0.256 Sum_probs=54.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC---------CCCccceeeecceeccCCC--cceEEEeeCcc-cHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM---------PSSIPAYYQESGRAGRDGL--QSYCRIYHSEH-SKKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~---------p~~~~~~~qr~GR~gR~~~--~~~~i~~~~~~-~~~~~~~~ 69 (101)
+|.++|||||+++++|+|+|+..+|| .|. |.+..+|.||+|||||.|. .|.+++++... +.+.++.+
T Consensus 309 ~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~ 387 (674)
T PRK01172 309 NRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKY 387 (674)
T ss_pred cCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHH
Confidence 58899999999999999999875555 332 5678889999999999985 46677776654 35666666
Q ss_pred HHcc
Q psy7959 70 IKTD 73 (101)
Q Consensus 70 ~~~~ 73 (101)
+...
T Consensus 388 l~~~ 391 (674)
T PRK01172 388 LSGE 391 (674)
T ss_pred HcCC
Confidence 6443
No 78
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=1.9e-11 Score=93.31 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=57.8
Q ss_pred CCceeEEEEccccccccCCCCccEE--EEeCCCCC----------ccceeeecceeccCCCcceEEEeeCcccHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFV--VHWGMPSS----------IPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~v--i~~~~p~~----------~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~ 69 (101)
+|+.+|||+|+++++|+|+|+|++| +++|...+ ...|+|++||+||.+..|.+++.....+...+..+
T Consensus 310 ~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~~~~ 389 (505)
T TIGR00595 310 NGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQAA 389 (505)
T ss_pred cCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHHHHH
Confidence 5789999999999999999999988 46665433 35679999999999989999877665555555555
Q ss_pred HHcccchh
Q psy7959 70 IKTDTSTK 77 (101)
Q Consensus 70 ~~~~~~~~ 77 (101)
...++...
T Consensus 390 ~~~d~~~f 397 (505)
T TIGR00595 390 LTGDYEAF 397 (505)
T ss_pred HhCCHHHH
Confidence 55444333
No 79
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.21 E-value=1.3e-11 Score=97.99 Aligned_cols=59 Identities=34% Similarity=0.564 Sum_probs=53.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccC-CCcceEEEeeCc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD-GLQSYCRIYHSE 60 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~-~~~~~~i~~~~~ 60 (101)
+|+++++|||+.++.|||+.+|+.||+++.|.+.+.++||+||+|+. +..+.++.+..+
T Consensus 302 ~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 302 EGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 68999999999999999999999999999999999999999999977 445777766655
No 80
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.19 E-value=2.5e-11 Score=92.39 Aligned_cols=58 Identities=22% Similarity=0.148 Sum_probs=49.3
Q ss_pred CCceeEEEEc-cccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeC
Q psy7959 2 RGEINVITAT-ISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHS 59 (101)
Q Consensus 2 ~g~~~vlv~T-~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~ 59 (101)
+|+.+||||| +++++|+|+|+++.||+++.+.+...|+||+||++|.+.....+.+++
T Consensus 392 ~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 392 GGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred CCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 3667899998 899999999999999999999999999999999999976544444443
No 81
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=2.4e-11 Score=97.65 Aligned_cols=61 Identities=31% Similarity=0.267 Sum_probs=54.2
Q ss_pred CceeEEEEccccccccCCC---Ccc-----EEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 3 GEINVITATISFGMGIDRQ---NVR-----FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~---~v~-----~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
+...|+|||++++||+|++ +|. +||++..|.+...|.|+.||+||.|.+|.++.|++..|.
T Consensus 645 ~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 645 QKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 4578999999999999999 564 458899999999999999999999999999999997653
No 82
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=6.1e-11 Score=93.56 Aligned_cols=62 Identities=18% Similarity=0.077 Sum_probs=53.9
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCC-CCccceeeecceeccCCCcceE-------EEeeCcccHH
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMP-SSIPAYYQESGRAGRDGLQSYC-------RIYHSEHSKK 64 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p-~~~~~~~qr~GR~gR~~~~~~~-------i~~~~~~~~~ 64 (101)
|++++||+|+++.+|+|+|++++||+++.| .+..+|+||+||++|.+..+.+ +.+++.+..+
T Consensus 541 ~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 541 PKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred CCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 478999999999999999999999999988 4999999999999999765443 7788876544
No 83
>KOG0947|consensus
Probab=99.11 E-value=2.2e-10 Score=91.78 Aligned_cols=92 Identities=28% Similarity=0.411 Sum_probs=75.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC---------CCCccceeeecceeccCCCc--ceEEEeeCcc--cHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM---------PSSIPAYYQESGRAGRDGLQ--SYCRIYHSEH--SKKSLEY 68 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~---------p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~--~~~~~~~ 68 (101)
+|-+|||+||.++++|+++|.-.+|+. .+ -..+.+|.|++|||||+|-+ |.+|++.... +...++.
T Consensus 654 rGlVKVLFATETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~ 732 (1248)
T KOG0947|consen 654 RGLVKVLFATETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKR 732 (1248)
T ss_pred cCceEEEeehhhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhh
Confidence 588999999999999999998666654 22 35789999999999999964 7888877754 6778899
Q ss_pred HHHcccchhHHHHHHHHHHHHHHHHH
Q psy7959 69 VIKTDTSTKREQLELKFKNYLSMLEY 94 (101)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~m~~~ 94 (101)
++.+....+..++...+.++.++++-
T Consensus 733 li~G~~~~L~SQFRlTY~MILnLLRv 758 (1248)
T KOG0947|consen 733 LIMGGPTRLESQFRLTYGMILNLLRV 758 (1248)
T ss_pred HhcCCCchhhhhhhhHHHHHHHHHHH
Confidence 99999999998888888877776653
No 84
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.10 E-value=4.2e-11 Score=95.48 Aligned_cols=52 Identities=17% Similarity=0.085 Sum_probs=43.9
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCc-ceEEEeeC
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ-SYCRIYHS 59 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~-~~~i~~~~ 59 (101)
.+|||||+++++|+|++. ++||++..| .++|+||+||+||.|+. +..++++.
T Consensus 337 ~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 337 TVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred ceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 689999999999999986 889987766 58999999999999985 44466553
No 85
>KOG0953|consensus
Probab=99.07 E-value=1.5e-10 Score=88.57 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=63.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC---------CCCccceeeecceeccCCCc--ceEEEeeCcccHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM---------PSSIPAYYQESGRAGRDGLQ--SYCRIYHSEHSKKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~---------p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~~~~~~~~~~ 70 (101)
+++++||||||+++||+++ +++.||.+++ |.+.++..|-+|||||.|.. ..-++-+...|+..++.++
T Consensus 407 ~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l 485 (700)
T KOG0953|consen 407 SNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRIL 485 (700)
T ss_pred CCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHHH
Confidence 4689999999999999998 7999998885 56788899999999999753 3345555678889999999
Q ss_pred HcccchhHH
Q psy7959 71 KTDTSTKRE 79 (101)
Q Consensus 71 ~~~~~~~~~ 79 (101)
+...++...
T Consensus 486 ~~p~epi~~ 494 (700)
T KOG0953|consen 486 KRPVEPIKN 494 (700)
T ss_pred hCCchHHHh
Confidence 988877744
No 86
>KOG4150|consensus
Probab=99.06 E-value=1e-10 Score=90.17 Aligned_cols=62 Identities=32% Similarity=0.445 Sum_probs=57.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
.|++.-++||++++.|+|+.+++.|++.++|.+.+++.|..|||||+++++.++.+......
T Consensus 581 ~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PV 642 (1034)
T KOG4150|consen 581 GGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPV 642 (1034)
T ss_pred CCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccch
Confidence 47889999999999999999999999999999999999999999999999998888776543
No 87
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.02 E-value=1.1e-10 Score=85.65 Aligned_cols=40 Identities=20% Similarity=0.551 Sum_probs=35.8
Q ss_pred ceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceec
Q psy7959 4 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAG 46 (101)
Q Consensus 4 ~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~g 46 (101)
+.+||||||++++|+|++.+ +|| ++ |.+..+|+||+||+|
T Consensus 318 ~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 318 QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 57899999999999999986 666 55 999999999999987
No 88
>PRK14701 reverse gyrase; Provisional
Probab=98.95 E-value=3.2e-10 Score=95.55 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=57.5
Q ss_pred CCceeEEEEc----cccccccCCCC-ccEEEEeCCCC---Cccceeeec-------------ceeccCCCcceEEEeeCc
Q psy7959 2 RGEINVITAT----ISFGMGIDRQN-VRFVVHWGMPS---SIPAYYQES-------------GRAGRDGLQSYCRIYHSE 60 (101)
Q Consensus 2 ~g~~~vlv~T----~~~~~G~d~~~-v~~vi~~~~p~---~~~~~~qr~-------------GR~gR~~~~~~~i~~~~~ 60 (101)
+|+++||||| ++++||||+|+ |++|||+|+|+ +...|.|.. ||+||.|..+.++..+..
T Consensus 376 ~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ 455 (1638)
T PRK14701 376 EGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFP 455 (1638)
T ss_pred cCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHH
Confidence 6899999999 58999999999 99999999999 888888877 999999887666644444
Q ss_pred ccHHHHHHHHHc
Q psy7959 61 HSKKSLEYVIKT 72 (101)
Q Consensus 61 ~~~~~~~~~~~~ 72 (101)
.+...++.+++.
T Consensus 456 ~~~~~~~~~l~~ 467 (1638)
T PRK14701 456 EDVEFLRSILKD 467 (1638)
T ss_pred HHHHHHHHHhcc
Confidence 555555555544
No 89
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.82 E-value=5.9e-09 Score=82.43 Aligned_cols=78 Identities=23% Similarity=0.271 Sum_probs=65.8
Q ss_pred CCceeEEEEccccccccCCCCccEE--EEeCCCCC----------ccceeeecceeccCCCcceEEEeeCcccHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFV--VHWGMPSS----------IPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~v--i~~~~p~~----------~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~ 69 (101)
+|+.+|||.|+++++|.|+|+++.| ++.|.-.. ...+.|-+|||||.+.+|.+++.....+...++.+
T Consensus 532 ~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 532 NGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred CCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHH
Confidence 5899999999999999999999977 45553322 33357999999999999999999999999999999
Q ss_pred HHcccchhHH
Q psy7959 70 IKTDTSTKRE 79 (101)
Q Consensus 70 ~~~~~~~~~~ 79 (101)
+.+++....+
T Consensus 612 ~~~dy~~F~~ 621 (730)
T COG1198 612 KRGDYEAFYE 621 (730)
T ss_pred HhcCHHHHHH
Confidence 9998877764
No 90
>KOG0922|consensus
Probab=98.77 E-value=3.6e-09 Score=82.09 Aligned_cols=72 Identities=25% Similarity=0.293 Sum_probs=60.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC------------------CCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
.|..||+++|++++-.+.++++.+||+-++ |.|.++..||+|||||. .+|.|+.+|+..++
T Consensus 314 ~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 314 PGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred CCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 378899999999999999999999998774 66888899999999998 59999999998877
Q ss_pred HHHHHHHHcccchh
Q psy7959 64 KSLEYVIKTDTSTK 77 (101)
Q Consensus 64 ~~~~~~~~~~~~~~ 77 (101)
+ .+..+..++.
T Consensus 393 ~---~~~~~~~PEI 403 (674)
T KOG0922|consen 393 D---KMPLQTVPEI 403 (674)
T ss_pred h---hcccCCCCce
Confidence 4 4444444444
No 91
>KOG0924|consensus
Probab=98.77 E-value=7e-09 Score=81.33 Aligned_cols=74 Identities=26% Similarity=0.357 Sum_probs=60.2
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCC------------------CCCccceeeecceeccCCCcceEEEeeCcccHH
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 64 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~ 64 (101)
|..+|+|||++++-.+.++++.+||..+. |.|.++..||+|||||.| +|.|+.+|+...+.
T Consensus 622 ~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay~ 700 (1042)
T KOG0924|consen 622 GVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAYK 700 (1042)
T ss_pred CceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHHH
Confidence 66899999999999999999999999774 778888999999999984 99999999865433
Q ss_pred HHHHHHHcccchhHH
Q psy7959 65 SLEYVIKTDTSTKRE 79 (101)
Q Consensus 65 ~~~~~~~~~~~~~~~ 79 (101)
..++....++..+
T Consensus 701 --~eml~stvPEIqR 713 (1042)
T KOG0924|consen 701 --NEMLPSTVPEIQR 713 (1042)
T ss_pred --hhcccCCCchhhh
Confidence 2455555555543
No 92
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.76 E-value=8.6e-09 Score=80.39 Aligned_cols=61 Identities=31% Similarity=0.467 Sum_probs=55.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC-CCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM-PSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~-p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
+|+++|||||.+.+.|+|+|+.++.|-.+. -...+++.|--||.||.+..+.|+.++.+..
T Consensus 531 ~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 531 EGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred cCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 589999999999999999999998877764 3688999999999999999999999999765
No 93
>KOG0923|consensus
Probab=98.75 E-value=5.9e-09 Score=81.37 Aligned_cols=62 Identities=26% Similarity=0.384 Sum_probs=54.0
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC------------------CCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
.|..+|++||++++-.+.+++|.+||+-+. |.|-++..||+|||||.| +|.|+.+|+.+.+
T Consensus 530 ~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 530 PGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY 608 (902)
T ss_pred CCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh
Confidence 366899999999999999999999998664 667888899999999985 9999999996654
Q ss_pred H
Q psy7959 64 K 64 (101)
Q Consensus 64 ~ 64 (101)
.
T Consensus 609 ~ 609 (902)
T KOG0923|consen 609 E 609 (902)
T ss_pred h
Confidence 4
No 94
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.75 E-value=5.6e-09 Score=83.64 Aligned_cols=61 Identities=30% Similarity=0.372 Sum_probs=53.5
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCC------------------CCCccceeeecceeccCCCcceEEEeeCcccHH
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 64 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~ 64 (101)
|+.||++||++++-+|.+++|++||+-+. |.|.++..||.|||||- ..|.|+-+|+..++.
T Consensus 312 ~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 312 GKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred CcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 34569999999999999999999998774 56788899999999998 599999999976655
No 95
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.5e-08 Score=82.26 Aligned_cols=94 Identities=26% Similarity=0.327 Sum_probs=76.9
Q ss_pred CCceeEEEEccccccccCCCCccEEEE----eC----CCCCccceeeecceeccCCCc--ceEEEeeCcc--cHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH----WG----MPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEH--SKKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~----~~----~p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~--~~~~~~~~ 69 (101)
.|.++|++||.+++.|+++|.-+.|+- || .+.++.+|.|..|||||.|.+ |.+|++..+. +......+
T Consensus 468 ~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l 547 (1041)
T COG4581 468 EGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGL 547 (1041)
T ss_pred ccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHh
Confidence 588999999999999999998666642 33 367899999999999999975 8888885543 46788899
Q ss_pred HHcccchhHHHHHHHHHHHHHHHHHH
Q psy7959 70 IKTDTSTKREQLELKFKNYLSMLEYC 95 (101)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~m~~~~ 95 (101)
...+...+...+...+.++.++++..
T Consensus 548 ~~~~~~~L~s~f~~sy~milnll~v~ 573 (1041)
T COG4581 548 ASGKLDPLRSQFRLSYNMILNLLRVE 573 (1041)
T ss_pred hcCCCccchhheecchhHHHhhhhhc
Confidence 99999999988888888877776653
No 96
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.67 E-value=5.8e-09 Score=83.90 Aligned_cols=62 Identities=31% Similarity=0.510 Sum_probs=55.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCC-CccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~-~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
.|++.++++|++++.|+|+.+++.||..+.|. +..+++||+||+||.++.+..+.....+..
T Consensus 362 ~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~ 424 (851)
T COG1205 362 EGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPL 424 (851)
T ss_pred cCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCcc
Confidence 58899999999999999999999999999999 899999999999999977777777764443
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.67 E-value=1.9e-08 Score=82.09 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=53.0
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC-CCCccceeeecceeccCCCcceEEEeeCcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM-PSSIPAYYQESGRAGRDGLQSYCRIYHSEH 61 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~-p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~ 61 (101)
+|+.+|||||.+.+-|+|+|+++.+|--+. -...++++|--||.||..+.+.|+.++.+.
T Consensus 853 ~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 853 NGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 689999999999999999999997765442 478999999999999999999999998854
No 98
>PRK09401 reverse gyrase; Reviewed
Probab=98.59 E-value=1.9e-08 Score=83.20 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=41.8
Q ss_pred CCceeEEEE----ccccccccCCCC-ccEEEEeCCCC------Cccceeeecceec
Q psy7959 2 RGEINVITA----TISFGMGIDRQN-VRFVVHWGMPS------SIPAYYQESGRAG 46 (101)
Q Consensus 2 ~g~~~vlv~----T~~~~~G~d~~~-v~~vi~~~~p~------~~~~~~qr~GR~g 46 (101)
+|+++|||| ||+++||+|+|+ |++|||||+|. ....|.||.||+-
T Consensus 374 ~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 374 EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 689999999 699999999999 89999999998 6788999999985
No 99
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.55 E-value=1.1e-07 Score=75.98 Aligned_cols=60 Identities=23% Similarity=0.448 Sum_probs=49.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEE----eC-----CCCCccceeeecceeccCCC--cceEEEeeCcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH----WG-----MPSSIPAYYQESGRAGRDGL--QSYCRIYHSEH 61 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~----~~-----~p~~~~~~~qr~GR~gR~~~--~~~~i~~~~~~ 61 (101)
.|+++|||||++++.|++.|.-+.||- |+ .+.+..+|.|+.|||||.|= .|.++++.+..
T Consensus 338 ~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 338 KGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSH 408 (766)
T ss_pred cCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCc
Confidence 589999999999999999998777663 66 56788899999999999984 36677776433
No 100
>KOG0926|consensus
Probab=98.54 E-value=6.2e-08 Score=77.17 Aligned_cols=60 Identities=28% Similarity=0.336 Sum_probs=50.9
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC------------------CCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
.|..-|+|||++++-.+.+|+|++||+.+. ..|.++.-||+|||||.| .|+|+.+|+..-
T Consensus 628 ~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAV 705 (1172)
T KOG0926|consen 628 KGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAV 705 (1172)
T ss_pred CCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHH
Confidence 466779999999999999999999999774 245666689999999985 899999998653
No 101
>KOG0949|consensus
Probab=98.53 E-value=1.2e-07 Score=76.67 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=57.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeC-CCCCccceeeecceeccCCCc--ceEEEeeCcccHHHHHHHHHcccchhH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWG-MPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEHSKKSLEYVIKTDTSTKR 78 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~-~p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (101)
+|.+.||+||.+++.|+++|.-++|.--| +-.++..|.|++|||||+|=+ |.++.+- -.....+.++......+.
T Consensus 986 ~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fmg--iP~~kv~rLlts~L~diq 1063 (1330)
T KOG0949|consen 986 QGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMG--IPRQKVQRLLTSLLPDIQ 1063 (1330)
T ss_pred cCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEEe--CcHHHHHHHHHHhhhccc
Confidence 57899999999999999999766665555 567899999999999999854 5555443 234445555555555554
Q ss_pred HHHH
Q psy7959 79 EQLE 82 (101)
Q Consensus 79 ~~~~ 82 (101)
...+
T Consensus 1064 G~~p 1067 (1330)
T KOG0949|consen 1064 GAYP 1067 (1330)
T ss_pred CCCc
Confidence 4333
No 102
>KOG0950|consensus
Probab=98.51 E-value=1.1e-07 Score=76.36 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=66.7
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC----CCCccceeeecceeccCCCc--ceEEEeeCcccHHHHHHHHHcccc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM----PSSIPAYYQESGRAGRDGLQ--SYCRIYHSEHSKKSLEYVIKTDTS 75 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~----p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~~~~~~~~~~~~~~~ 75 (101)
.|-+.|++||+.++-|++.|..+++|-+-. ..+..+|.|++|||||.|.+ |.+|+.+...+......++.....
T Consensus 546 ~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~ 625 (1008)
T KOG0950|consen 546 EGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLK 625 (1008)
T ss_pred hcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhcccc
Confidence 578999999999999999999999887553 46788999999999999864 889999999998877788887776
Q ss_pred hhHH
Q psy7959 76 TKRE 79 (101)
Q Consensus 76 ~~~~ 79 (101)
....
T Consensus 626 ~~~S 629 (1008)
T KOG0950|consen 626 PLNS 629 (1008)
T ss_pred cccc
Confidence 6654
No 103
>PRK09694 helicase Cas3; Provisional
Probab=98.44 E-value=7.1e-08 Score=77.86 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=38.8
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCC
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL 50 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~ 50 (101)
.+|||||+++++|+|+ +++++|....| ..+++||+||+||.+.
T Consensus 622 ~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 622 GRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 4799999999999999 58999998777 5799999999999975
No 104
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.39 E-value=3.8e-07 Score=67.03 Aligned_cols=58 Identities=24% Similarity=0.253 Sum_probs=45.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEE-eCC-CCCccceeeecceeccCCC-c-ceEEEeeC
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH-WGM-PSSIPAYYQESGRAGRDGL-Q-SYCRIYHS 59 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~-~~~-p~~~~~~~qr~GR~gR~~~-~-~~~i~~~~ 59 (101)
+|++++|++|.+++||+.+|+|++.+. ..- -.+.+.++|.+||+||.-. + |..+.|..
T Consensus 353 ~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 353 DGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred cCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 689999999999999999999996554 332 3678889999999999854 3 55555543
No 105
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.39 E-value=2.2e-07 Score=70.06 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=44.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccC
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 48 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~ 48 (101)
+|++++||++.++.+|+|+|+++.+|......|...|+||+||.-|.
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 35689999999999999999999999999999999999999999993
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.35 E-value=4.6e-07 Score=74.23 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=50.9
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcc--eEEEeeCcccH
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQS--YCRIYHSEHSK 63 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~--~~i~~~~~~~~ 63 (101)
.-+|++|.+++.|||+...++||+||.|+++....|+.||+-|.|+.. .++.++..+..
T Consensus 541 ~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 541 FVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred eEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 457899999999999999999999999999999999999999999763 35556666543
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.30 E-value=4.5e-07 Score=74.92 Aligned_cols=45 Identities=27% Similarity=0.189 Sum_probs=42.7
Q ss_pred eEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCC
Q psy7959 6 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL 50 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~ 50 (101)
+|+|+++++..|+|+|.|..||.+..+.|...|+|++||+.|...
T Consensus 758 ~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 758 NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 699999999999999999999999999999999999999999743
No 108
>KOG0920|consensus
Probab=98.23 E-value=4.6e-07 Score=73.18 Aligned_cols=62 Identities=26% Similarity=0.284 Sum_probs=52.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC------------------CCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
.|..||+++|++++-.|-+++|-+||+.+. +.+.++..||.|||||. .+|.|+.+++...+
T Consensus 468 ~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 468 KGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred CCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 467899999999999999999999998764 23556668999999998 79999999987655
Q ss_pred H
Q psy7959 64 K 64 (101)
Q Consensus 64 ~ 64 (101)
+
T Consensus 547 ~ 547 (924)
T KOG0920|consen 547 E 547 (924)
T ss_pred h
Confidence 4
No 109
>KOG0925|consensus
Probab=98.14 E-value=1.6e-06 Score=66.24 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=52.4
Q ss_pred ceeEEEEccccccccCCCCccEEEEeCC------------------CCCccceeeecceeccCCCcceEEEeeCcccHH
Q psy7959 4 EINVITATISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 64 (101)
Q Consensus 4 ~~~vlv~T~~~~~G~d~~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~ 64 (101)
..||+|+|++++-.+.+++|.+||+-++ |.|.++..||.||+||. .+|.|+.+|++..+.
T Consensus 313 ~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAFE 390 (699)
T ss_pred cceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhhh
Confidence 3689999999999999999999998764 78888999999999997 689999999865443
No 110
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.13 E-value=1.9e-06 Score=71.62 Aligned_cols=32 Identities=34% Similarity=0.619 Sum_probs=29.9
Q ss_pred CCceeEEEE----ccccccccCCCC-ccEEEEeCCCC
Q psy7959 2 RGEINVITA----TISFGMGIDRQN-VRFVVHWGMPS 33 (101)
Q Consensus 2 ~g~~~vlv~----T~~~~~G~d~~~-v~~vi~~~~p~ 33 (101)
+|+++|||| ||+++||+|+|+ |++|||||+|.
T Consensus 373 ~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 373 EGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred cCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 689999999 599999999999 89999999995
No 111
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.06 E-value=6.5e-06 Score=63.47 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=50.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeC-----CCCCccceeeecceeccCCCcceEEEeeCc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWG-----MPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~-----~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~ 60 (101)
.|.++|||+-+.+-+|+|+|.|.+|-..| +..|..+++|-+|||+|+ -+|.+|.+.+.
T Consensus 494 ~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 494 LGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred cCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 48899999999999999999999997766 467899999999999997 47888877653
No 112
>KOG0952|consensus
Probab=98.00 E-value=1.8e-05 Score=64.68 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=65.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCC-----------CCccceeeecceeccCC--CcceEEEeeCcccHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMP-----------SSIPAYYQESGRAGRDG--LQSYCRIYHSEHSKKSLEY 68 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p-----------~~~~~~~qr~GR~gR~~--~~~~~i~~~~~~~~~~~~~ 68 (101)
.|-++||+||..++-|+++|+ -.||..+-+ .+....+|..|||||.+ ..|.++++.+.+-.+.+-.
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~s 498 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYES 498 (1230)
T ss_pred cCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHH
Confidence 578999999999999999997 455554432 13455689999999985 5688888888888889999
Q ss_pred HHHcccchhHHHHHHHHHH
Q psy7959 69 VIKTDTSTKREQLELKFKN 87 (101)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~ 87 (101)
++.+..+...+-.....+.
T Consensus 499 Ll~~~~piES~~~~~L~dn 517 (1230)
T KOG0952|consen 499 LLTGQNPIESQLLPCLIDN 517 (1230)
T ss_pred HHcCCChhHHHHHHHHHHh
Confidence 9999887766544444443
No 113
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.98 E-value=6.6e-06 Score=66.21 Aligned_cols=60 Identities=28% Similarity=0.167 Sum_probs=49.6
Q ss_pred CceeEEEEccccccccCCCCc--------------------------------------cEEEEeCCCCCccceeeecce
Q psy7959 3 GEINVITATISFGMGIDRQNV--------------------------------------RFVVHWGMPSSIPAYYQESGR 44 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v--------------------------------------~~vi~~~~p~~~~~~~qr~GR 44 (101)
+...|+||||+++||+|++== -+||-...|.|.--=.|-.||
T Consensus 477 ~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGR 556 (830)
T PRK12904 477 RPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGR 556 (830)
T ss_pred CCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcc
Confidence 568999999999999998621 167777777777767899999
Q ss_pred eccCCCcceEEEeeCccc
Q psy7959 45 AGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 45 ~gR~~~~~~~i~~~~~~~ 62 (101)
+||-|.+|.+-.+++-.|
T Consensus 557 agRQGdpGss~f~lSleD 574 (830)
T PRK12904 557 SGRQGDPGSSRFYLSLED 574 (830)
T ss_pred cccCCCCCceeEEEEcCc
Confidence 999999999999888654
No 114
>KOG0951|consensus
Probab=97.97 E-value=9.3e-06 Score=67.47 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=68.0
Q ss_pred CCceeEEEEccccccccCCCCccEEEE----eC------CCCCccceeeecceeccCCCc--ceEEEeeCcccHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH----WG------MPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEHSKKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~----~~------~p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~~~~~~~~~ 69 (101)
+|.++|||+|-.++.|++.|.-+++|- || .+.++.+.+|+.|||||.+-+ |..+......++..+..+
T Consensus 631 ~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~ 710 (1674)
T KOG0951|consen 631 DGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSL 710 (1674)
T ss_pred cCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHh
Confidence 588999999999999999999877774 33 256788899999999998754 777888778888888888
Q ss_pred HHcccchhHHHHHHHHH
Q psy7959 70 IKTDTSTKREQLELKFK 86 (101)
Q Consensus 70 ~~~~~~~~~~~~~~~~~ 86 (101)
+.++.+...+-.++...
T Consensus 711 mn~qLpiesq~~~rl~d 727 (1674)
T KOG0951|consen 711 MNQQLPIESQFVSRLAD 727 (1674)
T ss_pred hhhcCCChHHHHHHhhh
Confidence 88888777664444433
No 115
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.86 E-value=6.5e-06 Score=65.63 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=43.8
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCC--CcceEEEeeCcc
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG--LQSYCRIYHSEH 61 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~--~~~~~i~~~~~~ 61 (101)
+...|+|||++++.|+|++ .+++|.- +..+.+.+||+||.+|.| ..|..+.+....
T Consensus 493 ~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 493 NEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred cCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 4678999999999999984 6666653 455788999999999999 456666665543
No 116
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=97.85 E-value=1.9e-06 Score=67.06 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=47.7
Q ss_pred CCceeEEEEccccccccCCCCccEEEEe----C-CCCCccceeeecceeccCC--CcceEEEeeCcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHW----G-MPSSIPAYYQESGRAGRDG--LQSYCRIYHSEH 61 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~----~-~p~~~~~~~qr~GR~gR~~--~~~~~i~~~~~~ 61 (101)
++++.++|+|-+++-|+|+|.-. ||.- + -+.++..|.|+.|||||.+ ..|.+++++.++
T Consensus 488 ~q~l~~VVTTAAL~AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 488 AQELAAVVTTAALAAGVDFPASQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCcceEeehhhhhcCCCCchHH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 46789999999999999999744 4432 2 2678999999999999997 358888888764
No 117
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.58 E-value=5.1e-05 Score=61.43 Aligned_cols=58 Identities=26% Similarity=0.229 Sum_probs=47.6
Q ss_pred eeEEEEccccccccCCCCcc--------EEEEeCCCCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 5 INVITATISFGMGIDRQNVR--------FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~--------~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
-.|.|||++++||.|+.=-. +||....|.|.--=-|-.||+||-|.+|.+-.|++-.|
T Consensus 475 GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 475 GAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred CeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 46899999999999985221 88988888776666799999999999999888887554
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.48 E-value=5.9e-05 Score=60.14 Aligned_cols=58 Identities=29% Similarity=0.238 Sum_probs=48.2
Q ss_pred eeEEEEccccccccCCC----------Ccc-----EEEEeCCCCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 5 INVITATISFGMGIDRQ----------NVR-----FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~----------~v~-----~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
-.|.|||++++||.|+. .|. +||-...+.|.--=.|-.||+||-|.+|.+-.|++-.|
T Consensus 476 gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 476 GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 35889999999999975 222 78888888888777899999999999999988888554
No 119
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=97.47 E-value=0.00012 Score=59.48 Aligned_cols=56 Identities=32% Similarity=0.241 Sum_probs=45.0
Q ss_pred EEEEccccccccCCCC--------------------------------c-----cEEEEeCCCCCccceeeecceeccCC
Q psy7959 7 VITATISFGMGIDRQN--------------------------------V-----RFVVHWGMPSSIPAYYQESGRAGRDG 49 (101)
Q Consensus 7 vlv~T~~~~~G~d~~~--------------------------------v-----~~vi~~~~p~~~~~~~qr~GR~gR~~ 49 (101)
|+|||++++||+|+.= | -+||-...+.|.--=.|-.||+||-|
T Consensus 500 VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQG 579 (908)
T PRK13107 500 VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQG 579 (908)
T ss_pred EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCC
Confidence 9999999999999751 1 16676666666555578999999999
Q ss_pred CcceEEEeeCccc
Q psy7959 50 LQSYCRIYHSEHS 62 (101)
Q Consensus 50 ~~~~~i~~~~~~~ 62 (101)
.+|.+-.|++-.|
T Consensus 580 DPGss~f~lSlED 592 (908)
T PRK13107 580 DAGSSRFYLSMED 592 (908)
T ss_pred CCCceeEEEEeCc
Confidence 9999999988655
No 120
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=97.38 E-value=0.00016 Score=58.85 Aligned_cols=57 Identities=32% Similarity=0.221 Sum_probs=44.0
Q ss_pred eEEEEccccccccCCCC---------------------------------c-----cEEEEeCCCCCccceeeecceecc
Q psy7959 6 NVITATISFGMGIDRQN---------------------------------V-----RFVVHWGMPSSIPAYYQESGRAGR 47 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~~---------------------------------v-----~~vi~~~~p~~~~~~~qr~GR~gR 47 (101)
.|+|||++++||+|+-= | -+||-...+.|.--=.|-.||+||
T Consensus 494 ~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGR 573 (896)
T PRK13104 494 AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGR 573 (896)
T ss_pred cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcccccc
Confidence 59999999999999751 1 155655556555555688999999
Q ss_pred CCCcceEEEeeCccc
Q psy7959 48 DGLQSYCRIYHSEHS 62 (101)
Q Consensus 48 ~~~~~~~i~~~~~~~ 62 (101)
-|.+|.+-.|++-.|
T Consensus 574 QGDPGss~f~lSleD 588 (896)
T PRK13104 574 QGDPGSSRFYLSLED 588 (896)
T ss_pred CCCCCceEEEEEcCc
Confidence 999999999888554
No 121
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.26 E-value=0.00025 Score=58.41 Aligned_cols=57 Identities=30% Similarity=0.254 Sum_probs=48.4
Q ss_pred eEEEEccccccccCCC---Cc-----cEEEEeCCCCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 6 NVITATISFGMGIDRQ---NV-----RFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~---~v-----~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
.|.|||++++||.|+. .| -+||-...+.|.---.|-.||+||-|.+|.+-.|++-.|
T Consensus 678 aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 678 TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 5889999999999985 12 388888888888888899999999999999988888554
No 122
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.23 E-value=0.00026 Score=57.88 Aligned_cols=58 Identities=24% Similarity=0.141 Sum_probs=49.0
Q ss_pred eeEEEEccccccccCCCC---cc-----EEEEeCCCCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 5 INVITATISFGMGIDRQN---VR-----FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~---v~-----~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
-.|.|||++++||.|+.= |. +||-...|.|.---.|-.||+||-|.+|.+..|++-.|
T Consensus 617 g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 617 GAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred CcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 468999999999998742 22 78888889888888999999999999999998888654
No 123
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.13 E-value=0.00028 Score=57.47 Aligned_cols=58 Identities=31% Similarity=0.225 Sum_probs=46.3
Q ss_pred eeEEEEccccccccCCC--------------------------------Ccc-----EEEEeCCCCCccceeeecceecc
Q psy7959 5 INVITATISFGMGIDRQ--------------------------------NVR-----FVVHWGMPSSIPAYYQESGRAGR 47 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~--------------------------------~v~-----~vi~~~~p~~~~~~~qr~GR~gR 47 (101)
-.|.|||++++||.|+. .|. +||-...+.|.--=.|-.||+||
T Consensus 498 GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGR 577 (913)
T PRK13103 498 GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGR 577 (913)
T ss_pred CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhcccccc
Confidence 35889999999999983 122 67777777766666788999999
Q ss_pred CCCcceEEEeeCccc
Q psy7959 48 DGLQSYCRIYHSEHS 62 (101)
Q Consensus 48 ~~~~~~~i~~~~~~~ 62 (101)
-|.+|.+-.|++-.|
T Consensus 578 QGDPGsS~f~lSlED 592 (913)
T PRK13103 578 QGDPGSSRFYLSLED 592 (913)
T ss_pred CCCCCceEEEEEcCc
Confidence 999999999888654
No 124
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.42 E-value=0.0045 Score=44.53 Aligned_cols=51 Identities=25% Similarity=0.266 Sum_probs=42.5
Q ss_pred CCCceeEEEEccccccccCCC--------CccEEEEeCCCCCccceeeecceeccCCCc
Q psy7959 1 MRGEINVITATISFGMGIDRQ--------NVRFVVHWGMPSSIPAYYQESGRAGRDGLQ 51 (101)
Q Consensus 1 ~~g~~~vlv~T~~~~~G~d~~--------~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~ 51 (101)
|+|+.+|+|-|++++.|+-+- .-++-|...+||+....+|..||+-|.++.
T Consensus 58 ~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 58 MDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred hCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 689999999999999997543 123446788999999999999999999874
No 125
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.27 E-value=0.0092 Score=48.61 Aligned_cols=74 Identities=19% Similarity=0.109 Sum_probs=50.1
Q ss_pred CCceeEEEEccccccccCCCCcc--EEEEeCCCCC-c-----------------------------cceeeecceeccCC
Q psy7959 2 RGEINVITATISFGMGIDRQNVR--FVVHWGMPSS-I-----------------------------PAYYQESGRAGRDG 49 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~--~vi~~~~p~~-~-----------------------------~~~~qr~GR~gR~~ 49 (101)
+|+..||+||+.+.+|+|+++.. .||-..+|.. + ..+.|-+||.=|..
T Consensus 723 ~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~ 802 (850)
T TIGR01407 723 NGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRE 802 (850)
T ss_pred hCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccC
Confidence 35678999999999999999765 6677777642 1 22368999999998
Q ss_pred CcceEEEeeCcc-cHHHHHHHHHcccc
Q psy7959 50 LQSYCRIYHSEH-SKKSLEYVIKTDTS 75 (101)
Q Consensus 50 ~~~~~i~~~~~~-~~~~~~~~~~~~~~ 75 (101)
++..++++++.- ....+...+-...+
T Consensus 803 ~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 803 NDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred CceEEEEEEccccccchHHHHHHHhCC
Confidence 776666666644 33344344444333
No 126
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.16 E-value=0.01 Score=47.31 Aligned_cols=71 Identities=8% Similarity=0.037 Sum_probs=49.1
Q ss_pred CCceeEEEEcc----ccccccCCCCccEEEEeCC------CC------CccceeeecceeccCCCcceEEEeeCcccHHH
Q psy7959 2 RGEINVITATI----SFGMGIDRQNVRFVVHWGM------PS------SIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 65 (101)
Q Consensus 2 ~g~~~vlv~T~----~~~~G~d~~~v~~vi~~~~------p~------~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~ 65 (101)
.++.+|||+|. +++ ++++.|+..|. |. ....+.|-+||+||....|.+++.. ..+...
T Consensus 469 ~~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~-~p~~~~ 542 (665)
T PRK14873 469 DAGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA-ESSLPT 542 (665)
T ss_pred ccCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe-CCCCHH
Confidence 35789999999 555 35676655442 21 2344579999999998889988885 444466
Q ss_pred HHHHHHcccchhH
Q psy7959 66 LEYVIKTDTSTKR 78 (101)
Q Consensus 66 ~~~~~~~~~~~~~ 78 (101)
++.+...++....
T Consensus 543 ~~~l~~~d~~~F~ 555 (665)
T PRK14873 543 VQALIRWDPVGHA 555 (665)
T ss_pred HHHHHhCCHHHHH
Confidence 7777777765554
No 127
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.06 E-value=0.0074 Score=39.10 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=24.1
Q ss_pred eEEEEccccccccCCCC--ccEEEEeCCCC
Q psy7959 6 NVITATISFGMGIDRQN--VRFVVHWGMPS 33 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~~--v~~vi~~~~p~ 33 (101)
-||++|..+++|+|+++ ++.||-.++|.
T Consensus 50 ~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 50 AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 58999988999999996 67899888874
No 128
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=95.89 E-value=0.014 Score=46.43 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=42.6
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccC-C--C-cceEEEeeC
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD-G--L-QSYCRIYHS 59 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~-~--~-~~~~i~~~~ 59 (101)
+.++|||++|++..|.|.|.+..++..- |..-..++|.+||+-|. . + .|..+-++.
T Consensus 590 ~~~~ilIVvdmllTGFDaP~l~tLyldK-plk~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 590 ENPKLLIVVDMLLTGFDAPILNTLYLDK-PLKYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred CCceEEEEEcccccccCCCccceEEEec-cccccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 4689999999999999999998887666 54445689999999993 3 2 245555543
No 129
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.73 E-value=0.011 Score=38.22 Aligned_cols=54 Identities=26% Similarity=0.215 Sum_probs=38.8
Q ss_pred eEEEEccc--cccccCCCC--ccEEEEeCCCCC-c------------------------------cceeeecceeccCCC
Q psy7959 6 NVITATIS--FGMGIDRQN--VRFVVHWGMPSS-I------------------------------PAYYQESGRAGRDGL 50 (101)
Q Consensus 6 ~vlv~T~~--~~~G~d~~~--v~~vi~~~~p~~-~------------------------------~~~~qr~GR~gR~~~ 50 (101)
-||+++.- +++|+|+++ ++.||-.++|.. + ....|-+||.=|..+
T Consensus 49 ~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~ 128 (142)
T smart00491 49 ALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKN 128 (142)
T ss_pred EEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCcc
Confidence 48888887 899999997 679999888732 1 112478888888876
Q ss_pred cceEEEeeC
Q psy7959 51 QSYCRIYHS 59 (101)
Q Consensus 51 ~~~~i~~~~ 59 (101)
+-.+++++.
T Consensus 129 D~g~i~l~D 137 (142)
T smart00491 129 DYGVVVLLD 137 (142)
T ss_pred ceEEEEEEe
Confidence 655555554
No 130
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.72 E-value=0.011 Score=39.06 Aligned_cols=58 Identities=29% Similarity=0.287 Sum_probs=37.2
Q ss_pred CceeEEEEcc--ccccccCCCC--ccEEEEeCCCCC-cc-----------------------------ceeeecceeccC
Q psy7959 3 GEINVITATI--SFGMGIDRQN--VRFVVHWGMPSS-IP-----------------------------AYYQESGRAGRD 48 (101)
Q Consensus 3 g~~~vlv~T~--~~~~G~d~~~--v~~vi~~~~p~~-~~-----------------------------~~~qr~GR~gR~ 48 (101)
+.--||+|+. .+.+|+|+++ ++.||-.++|.. +. ...|-+||+=|.
T Consensus 58 ~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~ 137 (167)
T PF13307_consen 58 GEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRS 137 (167)
T ss_dssp SSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--S
T ss_pred ccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceec
Confidence 4456899998 8999999996 889999998842 11 114789999998
Q ss_pred CCcceEEEeeCc
Q psy7959 49 GLQSYCRIYHSE 60 (101)
Q Consensus 49 ~~~~~~i~~~~~ 60 (101)
.++-.++++++.
T Consensus 138 ~~D~g~i~llD~ 149 (167)
T PF13307_consen 138 EDDYGVIILLDS 149 (167)
T ss_dssp TT-EEEEEEESG
T ss_pred cCCcEEEEEEcC
Confidence 877666777664
No 131
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=95.62 E-value=0.0047 Score=51.33 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=36.3
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCC
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL 50 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~ 50 (101)
+...|+|+|++++.|+|+ +.+++|- -|.+..+.+|+.||..|.+.
T Consensus 837 ~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 467899999999999997 3444443 36788899999999999875
No 132
>KOG0390|consensus
Probab=95.58 E-value=0.01 Score=47.90 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=47.3
Q ss_pred EEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCc--ceEEEeeCcc
Q psy7959 7 VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEH 61 (101)
Q Consensus 7 vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~ 61 (101)
+|.+|-+.+.||++=+.+.||.+|..|+|+.=.|-.+|+-|.|+. -.++.++..+
T Consensus 651 fLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 651 FLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred EEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 456777999999999999999999999999999999999999986 4555666655
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=95.24 E-value=0.015 Score=47.46 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=20.6
Q ss_pred eeecceeccCCCcceEEEeeCccc
Q psy7959 39 YQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 39 ~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
-|-.||+||-|.+|.+-.|++-.|
T Consensus 609 nQLrGRaGRQGDPG~s~f~lSLED 632 (870)
T CHL00122 609 NQLRGRAGRQGDPGSSRFFLSLED 632 (870)
T ss_pred HHHhccccCCCCCCcceEEEEecc
Confidence 488899999999999988888554
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.10 E-value=0.041 Score=45.42 Aligned_cols=73 Identities=18% Similarity=0.107 Sum_probs=50.1
Q ss_pred CceeEEEEccccccccCCCC--ccEEEEeCCCCC-c-----------------------------cceeeecceeccCCC
Q psy7959 3 GEINVITATISFGMGIDRQN--VRFVVHWGMPSS-I-----------------------------PAYYQESGRAGRDGL 50 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~--v~~vi~~~~p~~-~-----------------------------~~~~qr~GR~gR~~~ 50 (101)
++-.||++|..+.+|+|+|+ ++.||-..+|.. + ..+.|-+||.=|..+
T Consensus 803 ~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~ 882 (928)
T PRK08074 803 FDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTET 882 (928)
T ss_pred cCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCC
Confidence 34569999999999999996 578888887742 1 123688899999887
Q ss_pred cceEEEeeCcc-cHHHHHHHHHcccc
Q psy7959 51 QSYCRIYHSEH-SKKSLEYVIKTDTS 75 (101)
Q Consensus 51 ~~~~i~~~~~~-~~~~~~~~~~~~~~ 75 (101)
+-.++++++.- ....+...+-+..+
T Consensus 883 D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 883 DRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ceEEEEEecCccccchHHHHHHHhCC
Confidence 75566666644 33445444444444
No 135
>KOG0387|consensus
Probab=95.02 E-value=0.023 Score=46.09 Aligned_cols=57 Identities=16% Similarity=0.076 Sum_probs=48.8
Q ss_pred EEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcce--EEEeeCcccH
Q psy7959 7 VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSY--CRIYHSEHSK 63 (101)
Q Consensus 7 vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~--~i~~~~~~~~ 63 (101)
+|++|-+.+.|+++-..+-||-||.-|+|+.=.|-.-||.|.|+.-. ++.+++.+..
T Consensus 602 FLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 602 FLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred EEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 68899999999999999999999999999999999999999998633 4556666543
No 136
>COG4889 Predicted helicase [General function prediction only]
Probab=94.80 E-value=0.013 Score=48.47 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=44.9
Q ss_pred ceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCC---cceEEEeeC
Q psy7959 4 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL---QSYCRIYHS 59 (101)
Q Consensus 4 ~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~---~~~~i~~~~ 59 (101)
+++||-----+++|+|+|.++.||.|+.-.+.-+.+|-+||.=|... -|..|+.+.
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 56777666678999999999999999977888899999999988742 266555443
No 137
>KOG0385|consensus
Probab=94.72 E-value=0.034 Score=45.15 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=48.3
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCc--ceEEEeeCcccHH
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEHSKK 64 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~~~~ 64 (101)
.=+|++|=+.+.||++-..+.||.||.-|+|..=.|-.-||-|-|+. =.++.+++.+..+
T Consensus 541 FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 541 FIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred EEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 44789999999999999999999999999998888877777777764 4466677766443
No 138
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=94.47 E-value=0.044 Score=43.21 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=47.2
Q ss_pred eEEEEccccccccCCCC--ccEEEEeCCCCC------------------------------ccceeeecceeccCCCcce
Q psy7959 6 NVITATISFGMGIDRQN--VRFVVHWGMPSS------------------------------IPAYYQESGRAGRDGLQSY 53 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~~--v~~vi~~~~p~~------------------------------~~~~~qr~GR~gR~~~~~~ 53 (101)
-++|+|..+++|+|+++ .+.||-.++|.. ...+.|-+||.=|..++..
T Consensus 530 ~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G 609 (654)
T COG1199 530 LILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRG 609 (654)
T ss_pred eEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCce
Confidence 68999999999999996 578888888743 1223699999999877766
Q ss_pred EEEeeCcc-cHHHHHHHHHc
Q psy7959 54 CRIYHSEH-SKKSLEYVIKT 72 (101)
Q Consensus 54 ~i~~~~~~-~~~~~~~~~~~ 72 (101)
++++++.- ....++..+..
T Consensus 610 ~ivllD~R~~~~~y~~~l~~ 629 (654)
T COG1199 610 VIVLLDKRYATKRYGKLLLD 629 (654)
T ss_pred EEEEecccchhhhHHHHHHH
Confidence 66666543 33334444444
No 139
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.46 E-value=0.051 Score=43.57 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=43.6
Q ss_pred CceeEEEEccccccccCCCC--ccEEEEeCCCCC-cc-----------------------------ceeeecceeccCCC
Q psy7959 3 GEINVITATISFGMGIDRQN--VRFVVHWGMPSS-IP-----------------------------AYYQESGRAGRDGL 50 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~--v~~vi~~~~p~~-~~-----------------------------~~~qr~GR~gR~~~ 50 (101)
|+-.||++|..+.+|+|+|+ ++.||-..+|.. +. .+.|-+||.=|..+
T Consensus 584 ~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~ 663 (697)
T PRK11747 584 GEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQ 663 (697)
T ss_pred CCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCC
Confidence 45569999999999999986 789998887742 11 12588899988876
Q ss_pred cceEEEeeCcc
Q psy7959 51 QSYCRIYHSEH 61 (101)
Q Consensus 51 ~~~~i~~~~~~ 61 (101)
+-.++++++.-
T Consensus 664 D~G~i~ilD~R 674 (697)
T PRK11747 664 DRGRVTILDRR 674 (697)
T ss_pred ceEEEEEEccc
Confidence 65566666543
No 140
>KOG1015|consensus
Probab=94.30 E-value=0.065 Score=44.78 Aligned_cols=57 Identities=16% Similarity=0.067 Sum_probs=48.8
Q ss_pred eEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCc--ceEEEeeCccc
Q psy7959 6 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEHS 62 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~~ 62 (101)
-.||+|-+.+.|+++-..+.||.||..|+++-=.|-+=|+-|+|+. -.++.|+..+.
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGT 1278 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGT 1278 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhccc
Confidence 3689999999999999999999999999999999999999999974 55555666553
No 141
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.87 E-value=0.13 Score=42.12 Aligned_cols=73 Identities=23% Similarity=0.159 Sum_probs=47.5
Q ss_pred CceeEEEEccccccccCCC--CccEEEEeCCCCC------------------------------ccceeeecceeccCCC
Q psy7959 3 GEINVITATISFGMGIDRQ--NVRFVVHWGMPSS------------------------------IPAYYQESGRAGRDGL 50 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~--~v~~vi~~~~p~~------------------------------~~~~~qr~GR~gR~~~ 50 (101)
++-.||++|..+.+|+|+| +...||-..+|.. ...+.|-+||.=|..+
T Consensus 693 ~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~ 772 (820)
T PRK07246 693 GEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRRED 772 (820)
T ss_pred CCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCC
Confidence 4456999999999999997 3556666776632 1123688999999877
Q ss_pred cceEEEeeCcc-cHHHHHHHHHcccc
Q psy7959 51 QSYCRIYHSEH-SKKSLEYVIKTDTS 75 (101)
Q Consensus 51 ~~~~i~~~~~~-~~~~~~~~~~~~~~ 75 (101)
+..+++++++- ....+...+-+..+
T Consensus 773 D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 773 QKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred CcEEEEEECCcccccHHHHHHHHhCC
Confidence 65566666644 33344333333333
No 142
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=93.83 E-value=0.016 Score=47.04 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=39.9
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccC
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 48 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~ 48 (101)
-+|.++.+++.-|+|+|.|..++.+-.-.|-..|.|++||+=|.
T Consensus 482 P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 482 PRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred CceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 46889999999999999999999988889999999999999775
No 143
>KOG0384|consensus
Probab=93.72 E-value=0.11 Score=43.99 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=51.6
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcce--EEEeeCcccH
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSY--CRIYHSEHSK 63 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~--~i~~~~~~~~ 63 (101)
..+-+|+||=+.+.||++-..+.||.||.-|+|.+=+|--.||-|-|+... ++.+++.+..
T Consensus 751 ddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 751 DDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred CceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 356789999999999999999999999999999999998888888887643 6677776644
No 144
>KOG1513|consensus
Probab=93.23 E-value=0.052 Score=44.55 Aligned_cols=50 Identities=30% Similarity=0.289 Sum_probs=42.3
Q ss_pred CCCceeEEEEccccccccCCCCccEE--------EEeCCCCCccceeeecceeccCCC
Q psy7959 1 MRGEINVITATISFGMGIDRQNVRFV--------VHWGMPSSIPAYYQESGRAGRDGL 50 (101)
Q Consensus 1 ~~g~~~vlv~T~~~~~G~d~~~v~~v--------i~~~~p~~~~~~~qr~GR~gR~~~ 50 (101)
|+|+.-|-|-+.+++-||-++.=+.| |...+||+....+|..||+-|.++
T Consensus 854 M~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 854 MDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred ccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 78998999999999999877654444 456789999999999999999875
No 145
>KOG0388|consensus
Probab=92.80 E-value=0.2 Score=40.94 Aligned_cols=57 Identities=19% Similarity=0.125 Sum_probs=44.7
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcc--eEEEeeCcc
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQS--YCRIYHSEH 61 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~--~~i~~~~~~ 61 (101)
+=+|++|-+.+.||++-..+.||.||.-|++..=.|---||-|.|+.- .++.++..+
T Consensus 1096 FvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1096 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred EEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 457899999999999999999999999999888778777887777643 344444333
No 146
>KOG0701|consensus
Probab=92.19 E-value=0.013 Score=50.60 Aligned_cols=45 Identities=31% Similarity=0.504 Sum_probs=42.0
Q ss_pred ceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccC
Q psy7959 4 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 48 (101)
Q Consensus 4 ~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~ 48 (101)
++++|++|.+++.|+|++.++.|+.++.|....+|+|+.||+-+.
T Consensus 354 ~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 354 ELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccc
Confidence 578999999999999999999999999999999999999998554
No 147
>KOG0921|consensus
Probab=91.62 E-value=0.14 Score=42.53 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=48.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC------------------CCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
.|..+++++|.+++-.+.+.++.+||..+. ..+..+..||.||+||. +.|.|..++...-+
T Consensus 698 ~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~arF 776 (1282)
T KOG0921|consen 698 EGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRARF 776 (1282)
T ss_pred ccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHHH
Confidence 367899999999999998888888876552 23556678999999997 67888777765544
Q ss_pred HH
Q psy7959 64 KS 65 (101)
Q Consensus 64 ~~ 65 (101)
+.
T Consensus 777 ~~ 778 (1282)
T KOG0921|consen 777 EA 778 (1282)
T ss_pred HH
Confidence 43
No 148
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=91.24 E-value=0.14 Score=41.02 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=47.2
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCc--ceEEEeeCccc
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEHS 62 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~~ 62 (101)
.-++++|.+.+.|++.-..+.||.+|..+++....|...|+-|.|+. =.++.+...+.
T Consensus 764 ~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 764 KVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 44667778999999999999999999999999999999999888765 33555555554
No 149
>KOG0389|consensus
Probab=91.23 E-value=1.1 Score=36.84 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=52.6
Q ss_pred eEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCC--cceEEEeeCcccHH-HHHHHHHcccch
Q psy7959 6 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL--QSYCRIYHSEHSKK-SLEYVIKTDTST 76 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~--~~~~i~~~~~~~~~-~~~~~~~~~~~~ 76 (101)
=+|++|-+.+-||++-..+.||.+|+-.+|-.=.|---|+-|.|+ .=.++.+++.+..+ .+..+.+.+...
T Consensus 831 VFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~L 904 (941)
T KOG0389|consen 831 VFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLAL 904 (941)
T ss_pred EEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhh
Confidence 468999999999999999999999998887777776666666665 35577777777544 444555544433
No 150
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=90.98 E-value=0.46 Score=37.99 Aligned_cols=59 Identities=19% Similarity=0.013 Sum_probs=42.6
Q ss_pred CceeEEEEccccccccCC----------CCccEEEEeCCCCCc-------------------------cceeeecceecc
Q psy7959 3 GEINVITATISFGMGIDR----------QNVRFVVHWGMPSSI-------------------------PAYYQESGRAGR 47 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~----------~~v~~vi~~~~p~~~-------------------------~~~~qr~GR~gR 47 (101)
|.-.||++|+.+-+|+|+ ..++.||..-+|..+ -.+.|-+||.=|
T Consensus 521 ~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 521 GIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 557899999999999999 248889887777432 123588888888
Q ss_pred CCCc--ceEEEeeCcc
Q psy7959 48 DGLQ--SYCRIYHSEH 61 (101)
Q Consensus 48 ~~~~--~~~i~~~~~~ 61 (101)
...+ -..|.++++-
T Consensus 601 ~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 601 HPDMPQNRRIHMLDGR 616 (636)
T ss_pred cCCCcCceEEEEEeCC
Confidence 8766 5555555533
No 151
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=90.94 E-value=0.53 Score=38.67 Aligned_cols=58 Identities=19% Similarity=0.136 Sum_probs=39.0
Q ss_pred EEccccccccCCCC----------------------c----------cEEEEeCCCCCccceee--ecceeccCCCcceE
Q psy7959 9 TATISFGMGIDRQN----------------------V----------RFVVHWGMPSSIPAYYQ--ESGRAGRDGLQSYC 54 (101)
Q Consensus 9 v~T~~~~~G~d~~~----------------------v----------~~vi~~~~p~~~~~~~q--r~GR~gR~~~~~~~ 54 (101)
|+|+..+.|+|++. + ++||.|+.-.+.-.-+| |+||.||. +.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~---~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP---LRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC---cEE
Confidence 67888888999886 5 79999995444444455 66666664 567
Q ss_pred EEeeCcccHHHHHHH
Q psy7959 55 RIYHSEHSKKSLEYV 69 (101)
Q Consensus 55 i~~~~~~~~~~~~~~ 69 (101)
+.++..+..+...++
T Consensus 508 yfL~y~~S~EEq~yl 522 (814)
T TIGR00596 508 YFLYYGGSIEEQRYL 522 (814)
T ss_pred EEEEECCcHHHHHHH
Confidence 777776655544333
No 152
>KOG1000|consensus
Probab=90.84 E-value=0.29 Score=38.40 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=38.4
Q ss_pred EEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcce
Q psy7959 9 TATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSY 53 (101)
Q Consensus 9 v~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~ 53 (101)
++-.+++.|+++...+.|+...+++++.-++|-=-|+-|.|+.+.
T Consensus 549 lsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkss 593 (689)
T KOG1000|consen 549 LSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSS 593 (689)
T ss_pred EEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccce
Confidence 445678899999999999999999999999998888888887533
No 153
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=90.01 E-value=0.31 Score=40.90 Aligned_cols=32 Identities=28% Similarity=0.698 Sum_probs=27.5
Q ss_pred CCceeEEEEcc----ccccccCCCC-ccEEEEeCCCC
Q psy7959 2 RGEINVITATI----SFGMGIDRQN-VRFVVHWGMPS 33 (101)
Q Consensus 2 ~g~~~vlv~T~----~~~~G~d~~~-v~~vi~~~~p~ 33 (101)
.|++++||+.. ++-||+|+|+ ++++|.++.|+
T Consensus 381 ~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 381 EGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred cCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 58999998764 6779999996 88999999984
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.61 E-value=0.59 Score=37.52 Aligned_cols=55 Identities=24% Similarity=0.140 Sum_probs=41.9
Q ss_pred eeEEEEc--cccccccCCCC--ccEEEEeCCCC-Ccc------------------------------ceeeecceeccCC
Q psy7959 5 INVITAT--ISFGMGIDRQN--VRFVVHWGMPS-SIP------------------------------AYYQESGRAGRDG 49 (101)
Q Consensus 5 ~~vlv~T--~~~~~G~d~~~--v~~vi~~~~p~-~~~------------------------------~~~qr~GR~gR~~ 49 (101)
--||+|+ ..+++|+|+++ .+.||-.++|. ++. ...|-+||+=|..
T Consensus 583 gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~ 662 (705)
T TIGR00604 583 GAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHK 662 (705)
T ss_pred ceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCc
Confidence 3489998 78999999997 78999999885 211 1248889999987
Q ss_pred CcceEEEeeC
Q psy7959 50 LQSYCRIYHS 59 (101)
Q Consensus 50 ~~~~~i~~~~ 59 (101)
++-.++++++
T Consensus 663 ~D~G~iillD 672 (705)
T TIGR00604 663 DDYGSIVLLD 672 (705)
T ss_pred CceEEEEEEe
Confidence 7766677765
No 155
>KOG0391|consensus
Probab=88.48 E-value=0.99 Score=38.99 Aligned_cols=56 Identities=20% Similarity=0.132 Sum_probs=41.8
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCcc------ceeeecceeccCCCcceEEEeeCcccHH
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIP------AYYQESGRAGRDGLQSYCRIYHSEHSKK 64 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~------~~~qr~GR~gR~~~~~~~i~~~~~~~~~ 64 (101)
+.++++|-..+.|+++-..+.||+||.-|++. +..||+|++ ++=+.+.+++....+
T Consensus 1329 fcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1329 FCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISERTIE 1390 (1958)
T ss_pred EEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccchHH
Confidence 45688999999999999999999999877643 455666665 456677777765433
No 156
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=88.34 E-value=1.3 Score=31.22 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=52.4
Q ss_pred ceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceec-cCCCcceEEEeeCcccHHHHHHHH
Q psy7959 4 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAG-RDGLQSYCRIYHSEHSKKSLEYVI 70 (101)
Q Consensus 4 ~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~g-R~~~~~~~i~~~~~~~~~~~~~~~ 70 (101)
...|+|+=+.++||+-++++.......-+.+...+.|+.=+-| |.|=...|=+++++.-.+.+..+.
T Consensus 135 ~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 135 LNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDLCRIYMPEELYDWFRHIA 202 (239)
T ss_pred ceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccceEEecCHHHHHHHHHHH
Confidence 4789999999999999999988888888888889999988888 555466777777655555554444
No 157
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=87.94 E-value=0.81 Score=35.12 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=52.7
Q ss_pred CCceeEEEEcccc--ccccCCCCccEEEEeCCCCCccceeeecceeccCC------CcceEEEeeCcccHHHHHHHHHcc
Q psy7959 2 RGEINVITATISF--GMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG------LQSYCRIYHSEHSKKSLEYVIKTD 73 (101)
Q Consensus 2 ~g~~~vlv~T~~~--~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~------~~~~~i~~~~~~~~~~~~~~~~~~ 73 (101)
+|+.+||+-|.=+ =+-..+.+++.||.|++|..+.=|-..+...+... ....+.++++..|.-.+..++..+
T Consensus 348 ~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ 427 (442)
T PF06862_consen 348 HGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTE 427 (442)
T ss_pred cCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHH
Confidence 6889999999622 13456788999999999988777655444443332 257899999988888777776654
Q ss_pred c
Q psy7959 74 T 74 (101)
Q Consensus 74 ~ 74 (101)
.
T Consensus 428 r 428 (442)
T PF06862_consen 428 R 428 (442)
T ss_pred H
Confidence 4
No 158
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=86.01 E-value=0.25 Score=40.51 Aligned_cols=55 Identities=31% Similarity=0.235 Sum_probs=34.9
Q ss_pred eEEEEccccccccCCCCcc-----------EEEEeCCCCCccce-eeecceeccCCCcceEEEeeCcc
Q psy7959 6 NVITATISFGMGIDRQNVR-----------FVVHWGMPSSIPAY-YQESGRAGRDGLQSYCRIYHSEH 61 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~~v~-----------~vi~~~~p~~~~~~-~qr~GR~gR~~~~~~~i~~~~~~ 61 (101)
-|-|||++++||.|+.=-. +||-...-. .... -|--||+||-|..|.+..+++-.
T Consensus 479 aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhE-SRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 479 AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHE-SRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred ccccccccccCCcccccCCCHHHHHHhCCcEEEecccch-hhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 3569999999999975211 222221111 1112 27889999999888887777644
No 159
>KOG0386|consensus
Probab=84.45 E-value=0.83 Score=38.40 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=45.2
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEE
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCR 55 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i 55 (101)
..+|.+|-+.+.|++....+.||.||.-+++-...|+.-||-|.|+.-.+-
T Consensus 780 f~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evR 830 (1157)
T KOG0386|consen 780 FIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVR 830 (1157)
T ss_pred eeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhhee
Confidence 567899999999999999999999999999999999999999988754433
No 160
>KOG1016|consensus
Probab=71.18 E-value=6.7 Score=32.89 Aligned_cols=94 Identities=17% Similarity=0.105 Sum_probs=60.4
Q ss_pred eEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCc--ceEEEeeCcccH--HHHH-HHHHcccchh---
Q psy7959 6 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEHSK--KSLE-YVIKTDTSTK--- 77 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~~~--~~~~-~~~~~~~~~~--- 77 (101)
-+|++|-+...|+++=..+-+|-||..+++.-=.|-+-|.-|.|+. ..++.++-+... ..+. .+-++.....
T Consensus 792 lfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVD 871 (1387)
T KOG1016|consen 792 LFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVD 871 (1387)
T ss_pred eeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhc
Confidence 3678899999999977777888888889998888888888899876 444444444322 2222 2222222111
Q ss_pred --HHHHHHHHHHHHHHHHHHhcCC
Q psy7959 78 --REQLELKFKNYLSMLEYCEQVP 99 (101)
Q Consensus 78 --~~~~~~~~~~l~~m~~~~e~~~ 99 (101)
+-......+.+++++-|.|...
T Consensus 872 d~np~an~s~Ke~enLl~~~ea~~ 895 (1387)
T KOG1016|consen 872 DANPDANISQKELENLLMYDEAQD 895 (1387)
T ss_pred ccCccccccHHHHHHHhhhhhccc
Confidence 1122345677888888877543
No 161
>KOG0336|consensus
Probab=71.11 E-value=7.3 Score=30.29 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=29.2
Q ss_pred ecceeccCCCcceEEEeeCcccHHHHHHHHHcccchhHHHHHH
Q psy7959 41 ESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQLEL 83 (101)
Q Consensus 41 r~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (101)
|.|||||.|.+-..++.-....++.+-.++.....+..++...
T Consensus 555 rtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~ 597 (629)
T KOG0336|consen 555 RTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVR 597 (629)
T ss_pred ccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHH
Confidence 6788888888877788877776666666666655555443333
No 162
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=70.89 E-value=2.9 Score=35.20 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=39.5
Q ss_pred ceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccC
Q psy7959 4 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 48 (101)
Q Consensus 4 ~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~ 48 (101)
.++.+++-+++.+|-|-|++=.+....-..|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 579999999999999999998888888777777789999999775
No 163
>KOG0392|consensus
Probab=70.33 E-value=6.8 Score=34.13 Aligned_cols=59 Identities=20% Similarity=0.114 Sum_probs=47.3
Q ss_pred eeEE-EEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcce--EEEeeCcccH
Q psy7959 5 INVI-TATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSY--CRIYHSEHSK 63 (101)
Q Consensus 5 ~~vl-v~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~--~i~~~~~~~~ 63 (101)
++|| ++|.+.+.|+++-+.+.||.++=-|+|..=+|-.-||-|-|+.-. ++.+.+.+..
T Consensus 1395 IDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1395 IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred eeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccH
Confidence 5555 678899999999999999999988999999998888888887644 4555555543
No 164
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=67.82 E-value=8.3 Score=32.28 Aligned_cols=45 Identities=24% Similarity=0.195 Sum_probs=40.0
Q ss_pred ceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccC
Q psy7959 4 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRD 48 (101)
Q Consensus 4 ~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~ 48 (101)
-.+.+++-.++-+|-|=|+|=.++-..-..|..+=.|.+||.-|-
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 368899999999999999998888888778888889999999885
No 165
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=61.80 E-value=13 Score=20.16 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q psy7959 80 QLELKFKNYLSMLEYCEQV 98 (101)
Q Consensus 80 ~~~~~~~~l~~m~~~~e~~ 98 (101)
..-...+...+|+.||++.
T Consensus 18 ~RikvS~a~~~l~~y~e~~ 36 (57)
T cd00068 18 ERLKVSKAAAELLKYCEQN 36 (57)
T ss_pred chhhHHHHHHHHHHHHHhc
Confidence 3445667788999999988
No 166
>COG3615 TehB Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=58.90 E-value=13 Score=22.80 Aligned_cols=41 Identities=12% Similarity=0.243 Sum_probs=32.9
Q ss_pred CCCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecce
Q psy7959 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGR 44 (101)
Q Consensus 1 ~~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR 44 (101)
|+|.++++--|+ .|--.+..-++++.+.|..+.+++||+--
T Consensus 43 l~G~vk~~~~~e---e~~~~~e~~~~~ea~~~~~~PQ~WHrVea 83 (99)
T COG3615 43 LKGAVKFLGLAE---EGETEPEHVFSIEAQFPVFPPQAWHRVEA 83 (99)
T ss_pred EeceeEEEEEcC---CCCccceEEEeecCCCCccChhHeeeeee
Confidence 578888887765 46667777888999999999999999864
No 167
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=58.32 E-value=4.7 Score=33.78 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=20.5
Q ss_pred eeecceeccCCCcceEEEeeCccc
Q psy7959 39 YQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 39 ~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
.|--||+||-|.+|.+-.|++-.|
T Consensus 666 NQLRGRaGRQGDPGsSrFflSLED 689 (939)
T PRK12902 666 NQLRGRAGRQGDPGSTRFFLSLED 689 (939)
T ss_pred HHhhcccccCCCCCcceEEEEech
Confidence 388899999999999998888554
No 168
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=55.21 E-value=6.4 Score=33.04 Aligned_cols=16 Identities=38% Similarity=0.243 Sum_probs=14.0
Q ss_pred eEEEEccccccccCCC
Q psy7959 6 NVITATISFGMGIDRQ 21 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~ 21 (101)
.|.|||++++||.|+.
T Consensus 491 aVTIATNMAGRGTDIk 506 (939)
T PRK12902 491 AVTIATNMAGRGTDII 506 (939)
T ss_pred cEEEeccCCCCCcCEe
Confidence 5889999999998863
No 169
>KOG1133|consensus
Probab=54.87 E-value=6.7 Score=32.13 Aligned_cols=48 Identities=27% Similarity=0.223 Sum_probs=36.3
Q ss_pred ccccccCCCC--ccEEEEeCCCCC------------------c--------------cceeeecceeccCCCcceEEEee
Q psy7959 13 SFGMGIDRQN--VRFVVHWGMPSS------------------I--------------PAYYQESGRAGRDGLQSYCRIYH 58 (101)
Q Consensus 13 ~~~~G~d~~~--v~~vi~~~~p~~------------------~--------------~~~~qr~GR~gR~~~~~~~i~~~ 58 (101)
=+++||++.+ .+.|+-.++|.. . ...-|-+|||=|..++-.+|.++
T Consensus 698 KlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~Ll 777 (821)
T KOG1133|consen 698 KLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLL 777 (821)
T ss_pred ccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEe
Confidence 3578999987 779999998742 0 01258999999998888888887
Q ss_pred Cc
Q psy7959 59 SE 60 (101)
Q Consensus 59 ~~ 60 (101)
+.
T Consensus 778 D~ 779 (821)
T KOG1133|consen 778 DK 779 (821)
T ss_pred hh
Confidence 64
No 170
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=47.20 E-value=20 Score=19.99 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q psy7959 83 LKFKNYLSMLEYCEQVPSP 101 (101)
Q Consensus 83 ~~~~~l~~m~~~~e~~~~~ 101 (101)
..-+...+|+.||+...+|
T Consensus 24 ~vS~a~~~li~y~~~~~DP 42 (68)
T PF00631_consen 24 KVSKACKELIEYCESTPDP 42 (68)
T ss_dssp -HHHHHHHHHHHHHGTC-H
T ss_pred eHHHHHHHHHHHhcCCCCc
Confidence 5566788999999988776
No 171
>KOG2281|consensus
Probab=44.71 E-value=31 Score=28.41 Aligned_cols=39 Identities=15% Similarity=-0.019 Sum_probs=33.5
Q ss_pred EEEEccccccccCCCCccEEEEeCCCCCccceeeeccee
Q psy7959 7 VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRA 45 (101)
Q Consensus 7 vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~ 45 (101)
+.+.+|+.+++.|++..+.|+-+..+..--+|+-|+|++
T Consensus 328 v~~~~~~~gk~~~v~~kdlv~~~~~~f~~~EYI~Ragwt 366 (867)
T KOG2281|consen 328 VEFENDAEGKIYDVPLKDLVQPFHCLFEDVEYIARAGWT 366 (867)
T ss_pred EEEeeccccceeccchhhcccccccccccceeeeecccc
Confidence 457888889999999999999999888877898777776
No 172
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=43.75 E-value=63 Score=28.09 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCccceeeecceeccC--C--CcceEEEeeCccc
Q psy7959 33 SSIPAYYQESGRAGRD--G--LQSYCRIYHSEHS 62 (101)
Q Consensus 33 ~~~~~~~qr~GR~gR~--~--~~~~~i~~~~~~~ 62 (101)
.++..|+|-+||+.|. | ..|.+++++++..
T Consensus 515 pd~~tyiqasgrtsr~~~g~~t~gls~~~~~~~~ 548 (1171)
T TIGR01054 515 PDARTYIQASGRTSRLYAGGLTKGLSIVLVDDPE 548 (1171)
T ss_pred cCccceeEccChhhhcccCCcCCceEEEEecCHH
Confidence 4577899999999886 2 2588999987653
No 173
>KOG0330|consensus
Probab=43.66 E-value=33 Score=26.46 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=30.8
Q ss_pred ecceeccCCCcceEEEeeCcccHHHHHHHHHcccch
Q psy7959 41 ESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTST 76 (101)
Q Consensus 41 r~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 76 (101)
|.||+||.|..-.-++.|+-.-...+...+..+..+
T Consensus 390 RtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 390 RTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred cccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 899999999998888889988888888888777655
No 174
>KOG1123|consensus
Probab=43.66 E-value=11 Score=30.01 Aligned_cols=47 Identities=19% Similarity=0.107 Sum_probs=35.3
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCC-CCccceeeecceeccCC
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMP-SSIPAYYQESGRAGRDG 49 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p-~~~~~~~qr~GR~gR~~ 49 (101)
.+++-++-+-+..-.+|+|..+++|+...- .|--+=.||.||.-|+-
T Consensus 588 ~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 588 PKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred CccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 345667777777778999999999997754 34555678999988763
No 175
>KOG0701|consensus
Probab=42.27 E-value=17 Score=32.51 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=41.1
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceecc
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 47 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR 47 (101)
+.+..+++|.....|.|+..+..|+.++.-.+...++|..|++..
T Consensus 720 ~~v~~~~~pss~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~~ 764 (1606)
T KOG0701|consen 720 AEVLPLLAPSSLFPGLDYETFNEVYRFKYALTITSLNQSLLDVDH 764 (1606)
T ss_pred eeeeeeccchhcCCCcchheeeeeeeccccchhhhcccccccccc
Confidence 567889999999999999999999999999999999999999843
No 176
>KOG0951|consensus
Probab=39.06 E-value=52 Score=29.30 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=46.6
Q ss_pred CceeEEEEccccccccCCCCccEEEE-----eC------CCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVH-----WG------MPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~-----~~------~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
|.+.|+|...- -.|+-... ..||- || .+-+.+...|+.|+|.| .|.|+++........++++..
T Consensus 1430 g~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~ 1504 (1674)
T KOG0951|consen 1430 GAIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLY 1504 (1674)
T ss_pred CcEEEEEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhcc
Confidence 55666666543 44544332 23332 33 35567888999999977 778999998888888887777
Q ss_pred cccchh
Q psy7959 72 TDTSTK 77 (101)
Q Consensus 72 ~~~~~~ 77 (101)
+..+-.
T Consensus 1505 e~lPve 1510 (1674)
T KOG0951|consen 1505 EPLPVE 1510 (1674)
T ss_pred CcCchH
Confidence 766544
No 177
>PRK09401 reverse gyrase; Reviewed
Probab=38.47 E-value=37 Score=29.49 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=23.8
Q ss_pred CCccceeeecceeccCC----CcceEEEeeCccc
Q psy7959 33 SSIPAYYQESGRAGRDG----LQSYCRIYHSEHS 62 (101)
Q Consensus 33 ~~~~~~~qr~GR~gR~~----~~~~~i~~~~~~~ 62 (101)
.++..|+|-+||+.|.- ..|.+++++++..
T Consensus 517 pd~~tYiqasGRtSrl~~gg~t~glsv~l~dd~~ 550 (1176)
T PRK09401 517 PDVTTYIQASGRTSRLYAGGLTKGLSVLLVDDEK 550 (1176)
T ss_pred cCcchheecccchhcccCCCccceeEEEEecCHH
Confidence 45778999999999963 2588999988664
No 178
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=37.44 E-value=1.1e+02 Score=25.97 Aligned_cols=55 Identities=11% Similarity=0.057 Sum_probs=41.1
Q ss_pred ceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCC----cceEEEeeC
Q psy7959 4 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL----QSYCRIYHS 59 (101)
Q Consensus 4 ~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~----~~~~i~~~~ 59 (101)
..++||.+|++--|.|-|.+. .+=.|=|.---.++|=+.|+.|.-. .|..+.|..
T Consensus 593 ~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 593 PLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred CCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 578999999999999998654 4556667666677888888888732 366666655
No 179
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=34.42 E-value=48 Score=21.69 Aligned_cols=15 Identities=20% Similarity=0.040 Sum_probs=10.6
Q ss_pred CCceeEEEEcccccc
Q psy7959 2 RGEINVITATISFGM 16 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~ 16 (101)
++..++.|.||.=..
T Consensus 16 ~~~yki~IGTDSQ~~ 30 (144)
T PF04308_consen 16 DSNYKIIIGTDSQVK 30 (144)
T ss_pred CCCeEEEEecCCCcC
Confidence 356888999986443
No 180
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=34.25 E-value=21 Score=29.68 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=32.7
Q ss_pred CceeEEEEccccccccCCCCc--cEEEEe--CCC--CCccceeeecceeccCCCcc
Q psy7959 3 GEINVITATISFGMGIDRQNV--RFVVHW--GMP--SSIPAYYQESGRAGRDGLQS 52 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v--~~vi~~--~~p--~~~~~~~qr~GR~gR~~~~~ 52 (101)
++.+|++=|+++..|+++... +-+.-| ... .+..+..|.+||.-.-..+.
T Consensus 325 ~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~e 380 (824)
T PF02399_consen 325 KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDNE 380 (824)
T ss_pred cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccCe
Confidence 468999999999999988643 222222 222 33445799999995544333
No 181
>KOG0081|consensus
Probab=33.24 E-value=1.6e+02 Score=20.10 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=36.7
Q ss_pred cccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcccchhHH-------------HHH
Q psy7959 16 MGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKRE-------------QLE 82 (101)
Q Consensus 16 ~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 82 (101)
.|||+-.-++|.+..-|.. .||. .-..+-++...-.+.++.+...-...-+. ..-
T Consensus 42 VGIDFreKrvvY~s~gp~g----------~gr~--~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnv 109 (219)
T KOG0081|consen 42 VGIDFREKRVVYNSSGPGG----------GGRG--QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNV 109 (219)
T ss_pred eecccccceEEEeccCCCC----------CCcc--eEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHH
Confidence 4888887777777665531 2222 33455556655555554444332211111 122
Q ss_pred HHHHHHHHHHHHHhcC
Q psy7959 83 LKFKNYLSMLEYCEQV 98 (101)
Q Consensus 83 ~~~~~l~~m~~~~e~~ 98 (101)
+-|-...++..|||+.
T Consensus 110 rnWlSQL~~hAYcE~P 125 (219)
T KOG0081|consen 110 RNWLSQLQTHAYCENP 125 (219)
T ss_pred HHHHHHHHHhhccCCC
Confidence 3344455677888865
No 182
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=30.19 E-value=47 Score=15.84 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=7.7
Q ss_pred CCceeEEEEcc
Q psy7959 2 RGEINVITATI 12 (101)
Q Consensus 2 ~g~~~vlv~T~ 12 (101)
+|.+.|+|+|+
T Consensus 2 ~g~LqI~ISTn 12 (30)
T PF14824_consen 2 RGPLQIAISTN 12 (30)
T ss_dssp -TTEEEEEEES
T ss_pred CCCeEEEEECC
Confidence 46778888886
No 183
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=30.15 E-value=14 Score=23.70 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=26.6
Q ss_pred CccEE-EEeCCCCCccceeeecceeccCC----CcceEEEeeCcccHHH
Q psy7959 22 NVRFV-VHWGMPSSIPAYYQESGRAGRDG----LQSYCRIYHSEHSKKS 65 (101)
Q Consensus 22 ~v~~v-i~~~~p~~~~~~~qr~GR~gR~~----~~~~~i~~~~~~~~~~ 65 (101)
+-++| +|.--..|+..|++..||.|--. ..|+-|.+++.+....
T Consensus 50 Dk~HvHMNaT~W~sLT~FvkyLgr~G~~~Vdetekg~~I~yID~~pe~l 98 (127)
T PF10357_consen 50 DKDHVHMNATRWTSLTEFVKYLGREGKCKVDETEKGWFISYIDRSPETL 98 (127)
T ss_dssp SS----GGGSS-SSHHHHHHHHTTTTSEEEEEETTEEEEEE--SSHHHH
T ss_pred CccceeecccccchHHHHHHHHhhCCeeEeecCCCceEEEeeCCCHHHH
Confidence 33444 23345678999999999998542 3588999988764443
No 184
>KOG2340|consensus
Probab=28.58 E-value=56 Score=26.37 Aligned_cols=72 Identities=21% Similarity=0.205 Sum_probs=48.3
Q ss_pred CCceeEEEEcccc--ccccCCCCccEEEEeCCCCCccce---eeecceeccCC----CcceEEEeeCcccHHHHHHHHHc
Q psy7959 2 RGEINVITATISF--GMGIDRQNVRFVVHWGMPSSIPAY---YQESGRAGRDG----LQSYCRIYHSEHSKKSLEYVIKT 72 (101)
Q Consensus 2 ~g~~~vlv~T~~~--~~G~d~~~v~~vi~~~~p~~~~~~---~qr~GR~gR~~----~~~~~i~~~~~~~~~~~~~~~~~ 72 (101)
+|...||+-|.=+ =+-.++.+|+-||.|.+|..|.=| +.+.+|+--.| ....|.++++.-|.-.+..++..
T Consensus 600 qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGt 679 (698)
T KOG2340|consen 600 QGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGT 679 (698)
T ss_pred hcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhH
Confidence 5788899998632 245788999999999999876544 55666653333 22557777776666555555544
Q ss_pred c
Q psy7959 73 D 73 (101)
Q Consensus 73 ~ 73 (101)
+
T Consensus 680 e 680 (698)
T KOG2340|consen 680 E 680 (698)
T ss_pred H
Confidence 3
No 185
>PF02827 PKI: cAMP-dependent protein kinase inhibitor; InterPro: IPR004171 Members of this family are extremely potent competitive inhibitors of cAMP-dependent protein kinase activity. These proteins interact with the catalytic subunit of the enzyme after the cAMP-induced dissociation of its regulatory chains.; GO: 0004862 cAMP-dependent protein kinase inhibitor activity, 0006469 negative regulation of protein kinase activity; PDB: 3QAL_I 3QAM_I 3E8C_J 1YDS_I 2UZU_I 3E8E_Q 2UZV_2 2UZT_B 2UZW_I 2GNL_I ....
Probab=28.41 E-value=20 Score=20.83 Aligned_cols=9 Identities=56% Similarity=0.951 Sum_probs=4.8
Q ss_pred ecceeccCC
Q psy7959 41 ESGRAGRDG 49 (101)
Q Consensus 41 r~GR~gR~~ 49 (101)
-+||+||++
T Consensus 12 ssgRtGRRN 20 (74)
T PF02827_consen 12 SSGRTGRRN 20 (74)
T ss_dssp TSSTSS---
T ss_pred hcccccccc
Confidence 469999974
No 186
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=28.19 E-value=68 Score=17.70 Aligned_cols=19 Identities=32% Similarity=0.329 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q psy7959 80 QLELKFKNYLSMLEYCEQV 98 (101)
Q Consensus 80 ~~~~~~~~l~~m~~~~e~~ 98 (101)
..-..-+....|+.||++.
T Consensus 18 ~RikvS~a~~~li~y~e~~ 36 (63)
T smart00224 18 ERIKVSKAAEELLAYCEQH 36 (63)
T ss_pred ceehHHHHHHHHHHHHHcC
Confidence 3445567788999999964
No 187
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=27.53 E-value=65 Score=20.69 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=21.9
Q ss_pred CCCceeEEEEccccccccCCCC------ccEEEEeC
Q psy7959 1 MRGEINVITATISFGMGIDRQN------VRFVVHWG 30 (101)
Q Consensus 1 ~~g~~~vlv~T~~~~~G~d~~~------v~~vi~~~ 30 (101)
++|++.+.|-|.--..++|++. -++||.||
T Consensus 71 ~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD 106 (144)
T PF10657_consen 71 ISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFD 106 (144)
T ss_pred hcCceEEEEEccCCCeeechhhhhhcccceEEEecc
Confidence 3688888888876666776542 35999998
No 188
>PF10908 DUF2778: Protein of unknown function (DUF2778); InterPro: IPR021225 This is a bacterial family of uncharacterised proteins.
Probab=23.66 E-value=84 Score=19.90 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=22.1
Q ss_pred ccCCCcceEEEeeCcccHHHHHHHHHcc
Q psy7959 46 GRDGLQSYCRIYHSEHSKKSLEYVIKTD 73 (101)
Q Consensus 46 gR~~~~~~~i~~~~~~~~~~~~~~~~~~ 73 (101)
|+.|.+..||++.+..++..+...+...
T Consensus 85 g~~G~S~GCIT~~~~~dF~~lr~~l~~~ 112 (120)
T PF10908_consen 85 GPSGISEGCITFKSYSDFLRLRKALLST 112 (120)
T ss_pred CCCCcccccEeecCHHHHHHHHHHHhcC
Confidence 5667788899999999988877766654
No 189
>PRK14701 reverse gyrase; Provisional
Probab=23.41 E-value=87 Score=28.37 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=23.4
Q ss_pred CCccceeeecceeccC--C--CcceEEEeeCccc
Q psy7959 33 SSIPAYYQESGRAGRD--G--LQSYCRIYHSEHS 62 (101)
Q Consensus 33 ~~~~~~~qr~GR~gR~--~--~~~~~i~~~~~~~ 62 (101)
.++..|+|-+||+.|. | ..|.+++++++..
T Consensus 494 pd~~tyiqasgrtsrl~~gg~tkgls~~~~d~~~ 527 (1638)
T PRK14701 494 PDVRTYIQASGRTSRLFAGGITKGASVLIVDDPE 527 (1638)
T ss_pred cCcccceeccchhhhccCCCcCCceEEEEecCHH
Confidence 4577899999999886 2 2588999987653
No 190
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=23.22 E-value=69 Score=27.77 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCccceeeecceeccC--C--CcceEEEeeCccc
Q psy7959 33 SSIPAYYQESGRAGRD--G--LQSYCRIYHSEHS 62 (101)
Q Consensus 33 ~~~~~~~qr~GR~gR~--~--~~~~~i~~~~~~~ 62 (101)
.+...|+|-+||+.|. | ..|.+++++++.+
T Consensus 527 PD~~TYIQaSGRtSRLyaGglTkGlSvvlvdd~~ 560 (1187)
T COG1110 527 PDVRTYIQASGRTSRLYAGGLTKGLSVVLVDDPE 560 (1187)
T ss_pred cChhhheeccchHhhhhccccccceEEEEecCHH
Confidence 4577899999999996 3 2588999988664
No 191
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.74 E-value=47 Score=22.90 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=10.7
Q ss_pred cceeeecceeccC
Q psy7959 36 PAYYQESGRAGRD 48 (101)
Q Consensus 36 ~~~~qr~GR~gR~ 48 (101)
.+|++|+|++|..
T Consensus 68 ~~yl~rlG~~~~s 80 (195)
T PF12761_consen 68 DSYLSRLGRGGKS 80 (195)
T ss_pred HHHHHHhccccCC
Confidence 4689999999874
No 192
>PHA03371 circ protein; Provisional
Probab=21.52 E-value=2.1e+02 Score=20.38 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=23.3
Q ss_pred ccccccCCCCccEE-EEeCCCCC-------------ccceeeeccee
Q psy7959 13 SFGMGIDRQNVRFV-VHWGMPSS-------------IPAYYQESGRA 45 (101)
Q Consensus 13 ~~~~G~d~~~v~~v-i~~~~p~~-------------~~~~~qr~GR~ 45 (101)
.++|-+|+|+=+-+ |..|.+.+ -..|+|.+|||
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRA 75 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRA 75 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehh
Confidence 45667999987766 76665544 34568889998
Done!