Query psy7959
Match_columns 101
No_of_seqs 110 out of 1225
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 23:11:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oyw_A RECQ helicase, ATP-depe 99.8 4.1E-21 1.4E-25 144.7 7.7 95 2-98 284-378 (523)
2 3eaq_A Heat resistant RNA depe 99.8 8E-21 2.7E-25 128.7 5.7 69 2-70 79-147 (212)
3 2hjv_A ATP-dependent RNA helic 99.8 1.1E-20 3.8E-25 123.0 5.8 70 2-71 83-152 (163)
4 1fuk_A Eukaryotic initiation f 99.8 2.3E-20 7.9E-25 121.6 6.4 70 2-71 78-147 (165)
5 2v1x_A ATP-dependent DNA helic 99.8 1.5E-20 5E-25 143.7 6.0 89 2-98 315-403 (591)
6 2rb4_A ATP-dependent RNA helic 99.8 2.5E-20 8.7E-25 122.4 5.1 70 2-71 82-157 (175)
7 2jgn_A DBX, DDX3, ATP-dependen 99.8 3E-20 1E-24 123.6 3.2 69 2-70 94-162 (185)
8 3i32_A Heat resistant RNA depe 99.8 7.5E-20 2.6E-24 130.2 5.1 69 2-70 76-144 (300)
9 1t5i_A C_terminal domain of A 99.8 5.6E-20 1.9E-24 120.9 3.3 61 2-62 79-139 (172)
10 2p6n_A ATP-dependent RNA helic 99.8 8.3E-20 2.8E-24 122.2 3.8 64 2-65 102-166 (191)
11 2yjt_D ATP-dependent RNA helic 99.6 2.6E-20 8.9E-25 122.0 0.0 70 2-71 78-147 (170)
12 2db3_A ATP-dependent RNA helic 99.8 2E-19 6.8E-24 132.3 4.3 60 2-61 348-407 (434)
13 3i5x_A ATP-dependent RNA helic 99.8 4.9E-19 1.7E-23 132.9 5.6 71 2-72 390-460 (563)
14 3sqw_A ATP-dependent RNA helic 99.7 1.3E-18 4.4E-23 131.7 6.1 71 2-72 339-409 (579)
15 2i4i_A ATP-dependent RNA helic 99.7 4.7E-19 1.6E-23 127.8 2.6 69 2-70 324-392 (417)
16 1s2m_A Putative ATP-dependent 99.7 2.3E-18 7.9E-23 123.8 5.3 70 2-71 306-375 (400)
17 2j0s_A ATP-dependent RNA helic 99.7 1.4E-18 4.7E-23 125.5 4.1 69 2-70 324-392 (410)
18 3eiq_A Eukaryotic initiation f 99.7 1.4E-18 4.8E-23 125.1 3.3 70 2-71 328-397 (414)
19 3fht_A ATP-dependent RNA helic 99.7 1.5E-18 5.3E-23 124.6 2.6 61 2-62 314-380 (412)
20 1hv8_A Putative ATP-dependent 99.7 5E-18 1.7E-22 120.0 5.0 71 2-72 286-356 (367)
21 3pey_A ATP-dependent RNA helic 99.7 8.4E-18 2.9E-22 119.9 5.8 64 2-65 291-360 (395)
22 2z0m_A 337AA long hypothetical 99.7 4.6E-18 1.6E-22 119.2 3.6 67 2-69 264-330 (337)
23 3fmp_B ATP-dependent RNA helic 99.7 9.3E-19 3.2E-23 129.4 0.0 61 2-62 381-447 (479)
24 3tbk_A RIG-I helicase domain; 99.7 5.3E-17 1.8E-21 120.2 8.5 61 3-65 451-511 (555)
25 1xti_A Probable ATP-dependent 99.7 1.2E-17 4.1E-22 119.4 4.7 62 2-63 298-359 (391)
26 3oiy_A Reverse gyrase helicase 99.7 2E-17 6.9E-22 120.0 5.8 70 2-71 295-376 (414)
27 1fuu_A Yeast initiation factor 99.7 4.8E-18 1.7E-22 121.4 0.0 70 2-71 307-376 (394)
28 2ykg_A Probable ATP-dependent 99.7 1.1E-16 3.9E-21 122.5 7.4 60 3-64 460-519 (696)
29 4a2p_A RIG-I, retinoic acid in 99.7 4E-17 1.4E-21 121.3 4.3 60 3-64 452-511 (556)
30 3fho_A ATP-dependent RNA helic 99.6 3.9E-17 1.3E-21 122.3 0.9 76 2-77 405-490 (508)
31 1yks_A Genome polyprotein [con 99.6 1.3E-16 4.4E-21 118.0 2.2 56 2-58 221-296 (440)
32 2jlq_A Serine protease subunit 99.6 2.2E-16 7.4E-21 116.9 3.2 58 2-60 232-310 (451)
33 4gl2_A Interferon-induced heli 99.6 2.2E-16 7.4E-21 121.0 2.9 48 2-49 462-509 (699)
34 2z83_A Helicase/nucleoside tri 99.6 1.4E-16 4.7E-21 118.3 1.3 59 2-61 234-313 (459)
35 2xgj_A ATP-dependent RNA helic 99.6 1.9E-16 6.7E-21 126.9 2.1 74 2-75 430-514 (1010)
36 4a2q_A RIG-I, retinoic acid in 99.6 7.1E-16 2.4E-20 120.6 4.9 60 3-64 693-752 (797)
37 1wp9_A ATP-dependent RNA helic 99.6 4.2E-16 1.4E-20 112.6 3.0 63 2-65 417-479 (494)
38 2whx_A Serine protease/ntpase/ 99.6 4.4E-16 1.5E-20 119.6 2.0 62 2-64 399-484 (618)
39 3l9o_A ATP-dependent RNA helic 99.6 3.1E-16 1E-20 126.7 0.6 80 2-81 528-618 (1108)
40 4a2w_A RIG-I, retinoic acid in 99.6 2.7E-15 9.2E-20 119.4 5.3 60 3-64 693-752 (936)
41 2xau_A PRE-mRNA-splicing facto 99.5 8.8E-16 3E-20 120.4 1.6 61 2-63 367-445 (773)
42 2wv9_A Flavivirin protease NS2 99.5 1.4E-15 4.9E-20 117.8 2.7 56 2-58 454-530 (673)
43 1tf5_A Preprotein translocase 99.5 1.5E-15 5E-20 119.7 2.7 58 5-62 481-546 (844)
44 2d7d_A Uvrabc system protein B 99.5 5.2E-15 1.8E-19 114.3 4.4 62 2-64 493-559 (661)
45 3rc3_A ATP-dependent RNA helic 99.5 8.1E-15 2.8E-19 113.7 5.1 74 3-78 371-461 (677)
46 1c4o_A DNA nucleotide excision 99.5 7E-15 2.4E-19 113.6 4.3 64 2-66 487-555 (664)
47 3o8b_A HCV NS3 protease/helica 99.5 1.5E-15 5E-20 117.6 0.4 58 3-63 438-516 (666)
48 1gm5_A RECG; helicase, replica 99.5 4.2E-15 1.4E-19 116.7 2.0 60 2-61 637-697 (780)
49 2va8_A SSO2462, SKI2-type heli 99.5 5.6E-15 1.9E-19 114.1 2.6 61 2-62 336-409 (715)
50 1gku_B Reverse gyrase, TOP-RG; 99.5 6.6E-15 2.3E-19 118.5 3.1 66 2-67 317-460 (1054)
51 2zj8_A DNA helicase, putative 99.5 1.1E-14 3.6E-19 112.8 3.0 71 2-72 318-399 (720)
52 3jux_A Protein translocase sub 99.5 1.2E-14 4E-19 113.6 3.2 58 5-62 523-588 (822)
53 2p6r_A Afuhel308 helicase; pro 99.5 2.2E-14 7.5E-19 110.7 3.6 63 2-64 320-391 (702)
54 4a4z_A Antiviral helicase SKI2 99.5 1.4E-14 4.7E-19 116.1 2.0 74 2-76 423-509 (997)
55 4ddu_A Reverse gyrase; topoiso 99.4 2E-14 7E-19 116.1 2.7 32 2-33 352-388 (1104)
56 2v6i_A RNA helicase; membrane, 99.4 2E-14 6.9E-19 105.9 1.8 56 2-58 215-288 (431)
57 2fwr_A DNA repair protein RAD2 99.4 2.8E-14 9.6E-19 105.1 1.4 60 2-61 392-454 (472)
58 2oca_A DAR protein, ATP-depend 99.4 2E-14 6.7E-19 106.8 0.2 58 2-59 395-453 (510)
59 2fsf_A Preprotein translocase 99.4 9.7E-14 3.3E-18 109.4 2.7 57 6-62 491-584 (853)
60 3dmq_A RNA polymerase-associat 99.4 1.3E-13 4.3E-18 110.3 2.3 53 5-57 557-609 (968)
61 1z5z_A Helicase of the SNF2/RA 99.4 3.2E-13 1.1E-17 94.6 3.9 60 4-63 164-226 (271)
62 2eyq_A TRCF, transcription-rep 99.4 2.4E-13 8.4E-18 110.2 3.7 60 2-61 862-922 (1151)
63 1nkt_A Preprotein translocase 99.3 3.4E-13 1.2E-17 106.8 2.5 59 5-63 509-619 (922)
64 4f92_B U5 small nuclear ribonu 99.3 9.3E-13 3.2E-17 110.1 2.2 73 2-74 1237-1321(1724)
65 3h1t_A Type I site-specific re 99.2 2.2E-12 7.4E-17 97.7 2.6 44 7-50 502-545 (590)
66 4f92_B U5 small nuclear ribonu 99.2 1.1E-12 3.7E-17 109.7 0.8 73 2-74 402-486 (1724)
67 1z63_A Helicase of the SNF2/RA 99.1 2.1E-11 7.3E-16 90.3 3.2 61 4-64 393-456 (500)
68 1z3i_X Similar to RAD54-like; 99.0 2.6E-10 9E-15 87.7 3.3 58 6-63 471-530 (644)
69 3mwy_W Chromo domain-containin 98.8 1.2E-09 4E-14 85.8 2.6 59 5-63 626-686 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 98.8 1.4E-09 4.8E-14 87.8 2.6 57 2-59 647-707 (1038)
71 2vl7_A XPD; helicase, unknown 97.1 0.00017 5.8E-09 54.4 2.2 54 6-59 430-519 (540)
72 2ipc_A Preprotein translocase 96.6 0.0011 3.9E-08 53.3 2.7 38 25-62 662-699 (997)
73 4a15_A XPD helicase, ATP-depen 87.3 0.36 1.2E-05 37.0 2.8 57 4-60 494-583 (620)
74 3hgt_A HDA1 complex subunit 3; 82.7 7.9 0.00027 27.6 7.8 68 5-72 171-248 (328)
75 3crv_A XPD/RAD3 related DNA he 72.3 2.8 9.6E-05 31.4 3.1 55 6-60 439-530 (551)
76 1cmk_I CAMP-dependent protein 40.7 7.3 0.00025 17.3 0.3 8 42-49 9-16 (26)
77 1got_G GT-gamma; complex (GTP- 20.8 22 0.00075 19.7 0.1 37 62-98 18-54 (73)
No 1
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.84 E-value=4.1e-21 Score=144.68 Aligned_cols=95 Identities=34% Similarity=0.654 Sum_probs=83.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcccchhHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQL 81 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (101)
+|+.+|||||+++++|+|+|+|++||++|+|.+.++|+||+||+||.|..+.+++++.+.|....+.++.....+. ..
T Consensus 284 ~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~~~~~--~~ 361 (523)
T 1oyw_A 284 RDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQ--LQ 361 (523)
T ss_dssp TTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSCCSH--HH
T ss_pred cCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhccCcHH--HH
Confidence 5789999999999999999999999999999999999999999999999999999999999998888888744433 23
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy7959 82 ELKFKNYLSMLEYCEQV 98 (101)
Q Consensus 82 ~~~~~~l~~m~~~~e~~ 98 (101)
......+++|..||++.
T Consensus 362 ~~~~~~l~~m~~~~~~~ 378 (523)
T 1oyw_A 362 DIERHKLNAMGAFAEAQ 378 (523)
T ss_dssp HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 45567788999998763
No 2
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.82 E-value=8e-21 Score=128.67 Aligned_cols=69 Identities=30% Similarity=0.509 Sum_probs=62.0
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~ 70 (101)
+|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++++++.+...+..+.
T Consensus 79 ~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~ 147 (212)
T 3eaq_A 79 QGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALE 147 (212)
T ss_dssp SSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHH
T ss_pred CCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999998876655544
No 3
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.82 E-value=1.1e-20 Score=122.99 Aligned_cols=70 Identities=27% Similarity=0.468 Sum_probs=64.7
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++++.+.+...+..+.+
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 152 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 152 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999888776665544
No 4
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.81 E-value=2.3e-20 Score=121.59 Aligned_cols=70 Identities=23% Similarity=0.409 Sum_probs=59.7
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++++.+.+...+..+.+
T Consensus 78 ~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 147 (165)
T 1fuk_A 78 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 147 (165)
T ss_dssp TTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHH
T ss_pred cCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999888776665543
No 5
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.81 E-value=1.5e-20 Score=143.69 Aligned_cols=89 Identities=38% Similarity=0.738 Sum_probs=78.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHcccchhHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKTDTSTKREQL 81 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (101)
+|+++|||||+++++|+|+|+|++||++++|.+.++|+||+||+||.|..|.|++++.+.|...+..++.....
T Consensus 315 ~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~~~------ 388 (591)
T 2v1x_A 315 ANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENV------ 388 (591)
T ss_dssp TTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTSTT------
T ss_pred cCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhhhh------
Confidence 57899999999999999999999999999999999999999999999999999999999998888888765322
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy7959 82 ELKFKNYLSMLEYCEQV 98 (101)
Q Consensus 82 ~~~~~~l~~m~~~~e~~ 98 (101)
....+.+|..||++.
T Consensus 389 --~~~~l~~~~~~~~~~ 403 (591)
T 2v1x_A 389 --GQQKLYEMVSYCQNI 403 (591)
T ss_dssp --HHHHHHHHHHHHTCS
T ss_pred --hHHHHHHHHHHHhcc
Confidence 235567888888743
No 6
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.5e-20 Score=122.40 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=60.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCC------CCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMP------SSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p------~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|+.+|||||+++++|+|+|++++||++|+| .+..+|+||+||+||.|+.|.+++++.+.+...+..+.+
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~ 157 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQD 157 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHH
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHH
Confidence 5789999999999999999999999999999 899999999999999999999999999888776655544
No 7
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.79 E-value=3e-20 Score=123.64 Aligned_cols=69 Identities=26% Similarity=0.471 Sum_probs=56.5
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~ 70 (101)
+|+++|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++++++.+...++.+.
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 162 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 162 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHH
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999988765444443
No 8
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.79 E-value=7.5e-20 Score=130.16 Aligned_cols=69 Identities=32% Similarity=0.516 Sum_probs=58.4
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~ 70 (101)
+|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.++.++++.+...+..+.
T Consensus 76 ~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie 144 (300)
T 3i32_A 76 QGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALE 144 (300)
T ss_dssp HTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHH
T ss_pred cCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999988866554443
No 9
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=5.6e-20 Score=120.90 Aligned_cols=61 Identities=26% Similarity=0.455 Sum_probs=58.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
+|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++++.+.+
T Consensus 79 ~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 79 DFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp TTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred CCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 5789999999999999999999999999999999999999999999999999999998653
No 10
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.78 E-value=8.3e-20 Score=122.18 Aligned_cols=64 Identities=23% Similarity=0.443 Sum_probs=56.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcc-cHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH-SKKS 65 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~-~~~~ 65 (101)
+|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++++++. +...
T Consensus 102 ~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~ 166 (191)
T 2p6n_A 102 EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESV 166 (191)
T ss_dssp HTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHH
T ss_pred cCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHH
Confidence 478899999999999999999999999999999999999999999999999999999876 4443
No 11
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.63 E-value=2.6e-20 Score=121.97 Aligned_cols=70 Identities=30% Similarity=0.390 Sum_probs=63.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++++.+.+...++.+.+
T Consensus 78 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 78 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 4788999999999999999999999999999999999999999999999999999998887665544443
No 12
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.76 E-value=2e-19 Score=132.31 Aligned_cols=60 Identities=30% Similarity=0.556 Sum_probs=57.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEH 61 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~ 61 (101)
+|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.
T Consensus 348 ~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 348 NGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp TSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred cCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 578999999999999999999999999999999999999999999999999999999854
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.76 E-value=4.9e-19 Score=132.93 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=66.5
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT 72 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~ 72 (101)
+|+.+|||||+++++|+|+|+|++||++|+|.++.+|+||+||+||.|+.|.+++++.+.+...++.+.+.
T Consensus 390 ~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 460 (563)
T 3i5x_A 390 KDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 460 (563)
T ss_dssp HCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred cCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999998888777643
No 14
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=1.3e-18 Score=131.75 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=66.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT 72 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~ 72 (101)
+|+.+|||||+++++|+|+|+|++||++|+|.++.+|+||+||+||.|+.|.+++++.+.+...++.+.+.
T Consensus 339 ~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 409 (579)
T 3sqw_A 339 KDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 409 (579)
T ss_dssp HCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred cCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999998887777653
No 15
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.74 E-value=4.7e-19 Score=127.81 Aligned_cols=69 Identities=26% Similarity=0.471 Sum_probs=61.4
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~ 70 (101)
+|+.+|||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|+.|.+++++++.+...+..+.
T Consensus 324 ~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 392 (417)
T 2i4i_A 324 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 392 (417)
T ss_dssp HTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHH
T ss_pred cCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999988876555444
No 16
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.73 E-value=2.3e-18 Score=123.78 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=65.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|+.+|||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|+.|.+++++++.+...+..+.+
T Consensus 306 ~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~ 375 (400)
T 1s2m_A 306 QGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 375 (400)
T ss_dssp TTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred cCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999998877666554
No 17
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.73 E-value=1.4e-18 Score=125.46 Aligned_cols=69 Identities=20% Similarity=0.404 Sum_probs=63.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~ 70 (101)
+|+.+|||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|+.|.+++++.+.+...++.+.
T Consensus 324 ~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~ 392 (410)
T 2j0s_A 324 SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 392 (410)
T ss_dssp HTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999998877665543
No 18
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.72 E-value=1.4e-18 Score=125.09 Aligned_cols=70 Identities=27% Similarity=0.436 Sum_probs=53.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|+.+|||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|+.|.+++++++.+...++.+.+
T Consensus 328 ~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 397 (414)
T 3eiq_A 328 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 397 (414)
T ss_dssp CC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHH
T ss_pred cCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999988776665544
No 19
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.71 E-value=1.5e-18 Score=124.63 Aligned_cols=61 Identities=25% Similarity=0.409 Sum_probs=56.7
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCC------CccceeeecceeccCCCcceEEEeeCccc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPS------SIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~------~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
+|+.+|||||+++++|+|+|++++||++|+|. +..+|+||+||+||.|+.|.+++++.+.+
T Consensus 314 ~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 314 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp TTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 57899999999999999999999999999994 56899999999999999999999998664
No 20
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.71 E-value=5e-18 Score=120.01 Aligned_cols=71 Identities=24% Similarity=0.453 Sum_probs=65.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHHc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIKT 72 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~~ 72 (101)
+|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.++.++++.+...+..+.+.
T Consensus 286 ~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~ 356 (367)
T 1hv8_A 286 QKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERA 356 (367)
T ss_dssp TTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHH
T ss_pred cCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999988877666543
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.71 E-value=8.4e-18 Score=119.85 Aligned_cols=64 Identities=25% Similarity=0.443 Sum_probs=59.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCC------CccceeeecceeccCCCcceEEEeeCcccHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPS------SIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 65 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~------~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~ 65 (101)
+|+.+|||||+++++|+|+|++++||++|+|. +..+|+||+||+||.|+.|.+++++.+.+...
T Consensus 291 ~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 360 (395)
T 3pey_A 291 EGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFN 360 (395)
T ss_dssp TTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHH
T ss_pred CCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHH
Confidence 57899999999999999999999999999998 99999999999999999999999998765443
No 22
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.70 E-value=4.6e-18 Score=119.18 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=61.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~ 69 (101)
+|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.+++++. .+....+.+
T Consensus 264 ~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i 330 (337)
T 2z0m_A 264 EGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEV 330 (337)
T ss_dssp TTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHH
T ss_pred cCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999998 665555444
No 23
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.70 E-value=9.3e-19 Score=129.38 Aligned_cols=61 Identities=25% Similarity=0.409 Sum_probs=0.0
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCC------CccceeeecceeccCCCcceEEEeeCccc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPS------SIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~------~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
+|+.+|||||+++++|+|+|++++||++|+|. +..+|+||+||+||.|+.|.+++++.+.+
T Consensus 381 ~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 381 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp -------------------------------------------------------------------
T ss_pred cCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 57899999999999999999999999999994 66899999999999999999999998765
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.69 E-value=5.3e-17 Score=120.25 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=56.3
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHH
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 65 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~ 65 (101)
|+++|||||+++++|+|+|++++||+||+|+++.+|+||+|| ||. +.|.++.++++.+.+.
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIE 511 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHH
T ss_pred CCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHH
Confidence 789999999999999999999999999999999999999999 998 8899999998876543
No 25
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.69 E-value=1.2e-17 Score=119.40 Aligned_cols=62 Identities=26% Similarity=0.450 Sum_probs=58.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
+|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.+++++.+.+.
T Consensus 298 ~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 298 DFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp TTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred cCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 57889999999999999999999999999999999999999999999999999999987643
No 26
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.69 E-value=2e-17 Score=120.03 Aligned_cols=70 Identities=26% Similarity=0.519 Sum_probs=59.4
Q ss_pred CCceeEEEE----ccccccccCCCC-ccEEEEeCCC--CCccceeeecceeccCC----CcceEEEeeCccc-HHHHHHH
Q psy7959 2 RGEINVITA----TISFGMGIDRQN-VRFVVHWGMP--SSIPAYYQESGRAGRDG----LQSYCRIYHSEHS-KKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~----T~~~~~G~d~~~-v~~vi~~~~p--~~~~~~~qr~GR~gR~~----~~~~~i~~~~~~~-~~~~~~~ 69 (101)
+|+++|||| |+++++|+|+|+ |++||++|+| .+..+|+||+||+||.| ..|.+++++.+.. +..+...
T Consensus 295 ~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~ 374 (414)
T 3oiy_A 295 VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTR 374 (414)
T ss_dssp TTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHH
T ss_pred CCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHH
Confidence 588999999 999999999999 9999999999 99999999999999997 4799999994332 2344444
Q ss_pred HH
Q psy7959 70 IK 71 (101)
Q Consensus 70 ~~ 71 (101)
++
T Consensus 375 ~~ 376 (414)
T 3oiy_A 375 LL 376 (414)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 27
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.67 E-value=4.8e-18 Score=121.41 Aligned_cols=70 Identities=23% Similarity=0.409 Sum_probs=0.0
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~~~~~~ 71 (101)
+|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.+++++++.+...+..+.+
T Consensus 307 ~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 307 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999888766555443
No 28
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.66 E-value=1.1e-16 Score=122.50 Aligned_cols=60 Identities=27% Similarity=0.376 Sum_probs=41.8
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHH
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 64 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~ 64 (101)
|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+|| ||. +.|.++.+++..+..
T Consensus 460 g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 460 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVI 519 (696)
T ss_dssp -CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHH
T ss_pred CCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHH
Confidence 889999999999999999999999999999999999999999 998 788999999877663
No 29
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.66 E-value=4e-17 Score=121.25 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=36.6
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHH
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 64 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~ 64 (101)
|+++|||||+++++|+|+|++++||+||+|+++.+|+||+|| ||. +.|.++.++...+.+
T Consensus 452 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 452 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp --CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 889999999999999999999999999999999999999999 998 789999999887654
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.62 E-value=3.9e-17 Score=122.28 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=48.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCC------CCccceeeecceeccCCCcceEEEeeCcc-c---HHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMP------SSIPAYYQESGRAGRDGLQSYCRIYHSEH-S---KKSLEYVIK 71 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p------~~~~~~~qr~GR~gR~~~~~~~i~~~~~~-~---~~~~~~~~~ 71 (101)
+|+.+|||||+++++|+|+|++++||++|.| .+..+|+||+||+||.|+.|.+++++.+. + ...+.....
T Consensus 405 ~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~ 484 (508)
T 3fho_A 405 VGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQ 484 (508)
T ss_dssp SSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSC
T ss_pred CCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999999 78999999999999999999999999854 3 344444444
Q ss_pred cccchh
Q psy7959 72 TDTSTK 77 (101)
Q Consensus 72 ~~~~~~ 77 (101)
......
T Consensus 485 ~~i~~l 490 (508)
T 3fho_A 485 RPITRV 490 (508)
T ss_dssp CCCC--
T ss_pred CCcccC
Confidence 444443
No 31
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.61 E-value=1.3e-16 Score=118.00 Aligned_cols=56 Identities=25% Similarity=0.216 Sum_probs=51.9
Q ss_pred CCceeEEEEccccccccCCCCccEEEE-------------------eCCCCCccceeeecceeccC-CCcceEEEee
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH-------------------WGMPSSIPAYYQESGRAGRD-GLQSYCRIYH 58 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~-------------------~~~p~~~~~~~qr~GR~gR~-~~~~~~i~~~ 58 (101)
+|+++|||||+++++|+|+| +++||+ ++.|.+.++|+||+||+||. +..|.|++++
T Consensus 221 ~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 221 QKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp -CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred CCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 58899999999999999999 999986 88899999999999999998 6789999997
No 32
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.60 E-value=2.2e-16 Score=116.93 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=53.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeC--------------------CCCCccceeeecceeccCCC-cceEEEeeCc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWG--------------------MPSSIPAYYQESGRAGRDGL-QSYCRIYHSE 60 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~--------------------~p~~~~~~~qr~GR~gR~~~-~~~~i~~~~~ 60 (101)
+|+.+|||||+++++|+|+|+ ++||++| .|.+..+|+||+||+||.|. .|.++.++..
T Consensus 232 ~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 232 LTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp SSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 588999999999999999999 9999999 99999999999999999998 7888888753
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.60 E-value=2.2e-16 Score=120.99 Aligned_cols=48 Identities=31% Similarity=0.477 Sum_probs=42.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCC
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 49 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~ 49 (101)
+|+++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|
T Consensus 462 ~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 462 TGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp C---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred cCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 588999999999999999999999999999999999999999976654
No 34
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.59 E-value=1.4e-16 Score=118.29 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=52.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEE--------------------eCCCCCccceeeecceeccCCC-cceEEEeeCc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH--------------------WGMPSSIPAYYQESGRAGRDGL-QSYCRIYHSE 60 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~--------------------~~~p~~~~~~~qr~GR~gR~~~-~~~~i~~~~~ 60 (101)
+|+.+|||||+++++|+|+|+ ++||+ ++.|.+.++|+||+||+||.|. .|.+++++.+
T Consensus 234 ~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 234 NGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGA 312 (459)
T ss_dssp SCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcc
Confidence 588999999999999999999 99999 6799999999999999999997 8999999987
Q ss_pred c
Q psy7959 61 H 61 (101)
Q Consensus 61 ~ 61 (101)
.
T Consensus 313 ~ 313 (459)
T 2z83_A 313 T 313 (459)
T ss_dssp C
T ss_pred c
Confidence 5
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.9e-16 Score=126.93 Aligned_cols=74 Identities=28% Similarity=0.406 Sum_probs=66.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEE----eCC----CCCccceeeecceeccCCC--cceEEEeeCcc-cHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH----WGM----PSSIPAYYQESGRAGRDGL--QSYCRIYHSEH-SKKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~----~~~----p~~~~~~~qr~GR~gR~~~--~~~~i~~~~~~-~~~~~~~~~ 70 (101)
+|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+||+||.|. .|.+++++++. +...+..++
T Consensus 430 ~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 430 EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp TTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHH
T ss_pred cCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHH
Confidence 588999999999999999999999999 998 8999999999999999996 49999999876 667777777
Q ss_pred Hcccc
Q psy7959 71 KTDTS 75 (101)
Q Consensus 71 ~~~~~ 75 (101)
.+..+
T Consensus 510 ~~~~~ 514 (1010)
T 2xgj_A 510 KGQAD 514 (1010)
T ss_dssp SCCCC
T ss_pred hCCCc
Confidence 76655
No 36
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.59 E-value=7.1e-16 Score=120.59 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=42.2
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHH
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 64 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~ 64 (101)
|+++|||||+++++|+|+|++++||+||+|+++.+|+||+|| ||. +.|.++.+++..+.+
T Consensus 693 g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp -CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 889999999999999999999999999999999999999999 998 889999999877654
No 37
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.58 E-value=4.2e-16 Score=112.61 Aligned_cols=63 Identities=30% Similarity=0.346 Sum_probs=58.4
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKS 65 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~ 65 (101)
+|+.+|||||+++++|+|+|++++||++|.|+++..|+||+||+||.|+ |.++.++.+++.+.
T Consensus 417 ~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 417 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred cCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 3678999999999999999999999999999999999999999999998 99999999886654
No 38
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.57 E-value=4.4e-16 Score=119.59 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=54.6
Q ss_pred CCceeEEEEccccccccCCCCccEE--------------------EEeCCCCCccceeeecceeccCCC-cceEEEeeC-
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFV--------------------VHWGMPSSIPAYYQESGRAGRDGL-QSYCRIYHS- 59 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~v--------------------i~~~~p~~~~~~~qr~GR~gR~~~-~~~~i~~~~- 59 (101)
+|+.+||||||++++|+|+| +++| |+++.|.+.++|+||+||+||.|. .|.+++++.
T Consensus 399 ~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 399 LTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp HSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccC
Confidence 47899999999999999997 8888 777889999999999999999975 899999997
Q ss_pred --cccHH
Q psy7959 60 --EHSKK 64 (101)
Q Consensus 60 --~~~~~ 64 (101)
+.+..
T Consensus 478 ~~~~d~~ 484 (618)
T 2whx_A 478 PLKNDED 484 (618)
T ss_dssp CCCCCTT
T ss_pred CchhhHH
Confidence 55543
No 39
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.1e-16 Score=126.72 Aligned_cols=80 Identities=24% Similarity=0.279 Sum_probs=63.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCC--------CCccceeeecceeccCC--CcceEEEeeCcc-cHHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMP--------SSIPAYYQESGRAGRDG--LQSYCRIYHSEH-SKKSLEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p--------~~~~~~~qr~GR~gR~~--~~~~~i~~~~~~-~~~~~~~~~ 70 (101)
+|.++|||||+++++|+|+|++++||+++.| .++.+|+||+||+||.| ..|.+++++.+. +...+..++
T Consensus 528 ~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 528 EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp HTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred CCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 4889999999999999999999999987764 35666999999999999 579999999876 566777788
Q ss_pred HcccchhHHHH
Q psy7959 71 KTDTSTKREQL 81 (101)
Q Consensus 71 ~~~~~~~~~~~ 81 (101)
......+...+
T Consensus 608 ~~~~~~L~S~f 618 (1108)
T 3l9o_A 608 KGQADRLDSAF 618 (1108)
T ss_dssp HCCCCCCCCCC
T ss_pred cCCCccccccc
Confidence 77665554433
No 40
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.55 E-value=2.7e-15 Score=119.42 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=42.6
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCcccHH
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 64 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~ 64 (101)
|+++|||||+++++|+|+|++++||+||+|+++.+|+||+|| ||. ..|.++.++...+.+
T Consensus 693 g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp -CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 889999999999999999999999999999999999999999 998 788899998876543
No 41
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.54 E-value=8.8e-16 Score=120.39 Aligned_cols=61 Identities=26% Similarity=0.308 Sum_probs=57.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC------------------CCCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM------------------PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
+|..+|||||+++++|+|+|+|++||++|+ |.+.++|+||+||+||. ..|.|+.++++.++
T Consensus 367 ~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp SCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 588999999999999999999999999888 88999999999999999 78999999987665
No 42
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.54 E-value=1.4e-15 Score=117.80 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=52.3
Q ss_pred CCceeEEEEccccccccCCCCccEEEE--------------------eCCCCCccceeeecceeccC-CCcceEEEee
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH--------------------WGMPSSIPAYYQESGRAGRD-GLQSYCRIYH 58 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~--------------------~~~p~~~~~~~qr~GR~gR~-~~~~~~i~~~ 58 (101)
+|+++|||||+++++|+|+| +++||+ +++|.+.++|+||+||+||. ++.|.+++++
T Consensus 454 ~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 454 NGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp TCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred CCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 58899999999999999999 999998 56899999999999999999 6789999996
No 43
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.54 E-value=1.5e-15 Score=119.68 Aligned_cols=58 Identities=29% Similarity=0.180 Sum_probs=55.0
Q ss_pred eeEEEEccccccccCCC--------CccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 5 INVITATISFGMGIDRQ--------NVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~--------~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
.+|+||||+++||+|++ ++.+||++++|.+...|+||+||+||.|.+|.++.|++..|
T Consensus 481 g~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 481 GAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp TCEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CeEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 57999999999999999 78899999999999999999999999999999999998665
No 44
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.52 E-value=5.2e-15 Score=114.29 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=57.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC-----CCCccceeeecceeccCCCcceEEEeeCcccHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM-----PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKK 64 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~-----p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~ 64 (101)
+|+++|||||+++++|+|+|++++||++|. |.+..+|+||+||+||. ..|.+++++++.+..
T Consensus 493 ~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~ 559 (661)
T 2d7d_A 493 LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKS 559 (661)
T ss_dssp HTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHH
T ss_pred cCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHH
Confidence 378999999999999999999999999997 99999999999999998 789999999887654
No 45
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.52 E-value=8.1e-15 Score=113.69 Aligned_cols=74 Identities=22% Similarity=0.372 Sum_probs=61.1
Q ss_pred CceeEEEEccccccccCCCCccEEEEeCC--------------CCCccceeeecceeccCCCc---ceEEEeeCcccHHH
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVVHWGM--------------PSSIPAYYQESGRAGRDGLQ---SYCRIYHSEHSKKS 65 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi~~~~--------------p~~~~~~~qr~GR~gR~~~~---~~~i~~~~~~~~~~ 65 (101)
|+++|||||+++++|+|+ ++++||++|+ |.+.++|+||+||+||.|.. |.++.+ .+.+...
T Consensus 371 g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~ 448 (677)
T 3rc3_A 371 DPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHEDLSL 448 (677)
T ss_dssp SSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTHHHH
T ss_pred CCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecchHHH
Confidence 789999999999999999 9999999998 78999999999999999964 555554 4556666
Q ss_pred HHHHHHcccchhH
Q psy7959 66 LEYVIKTDTSTKR 78 (101)
Q Consensus 66 ~~~~~~~~~~~~~ 78 (101)
+..++.....+..
T Consensus 449 ~~~~~~~~~~~i~ 461 (677)
T 3rc3_A 449 LKEILKRPVDPIR 461 (677)
T ss_dssp HHHHHHSCCCCCC
T ss_pred HHHHHhcCcchhh
Confidence 7777776655543
No 46
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.51 E-value=7e-15 Score=113.65 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=57.9
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC-----CCCccceeeecceeccCCCcceEEEeeCcccHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM-----PSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSL 66 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~-----p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~~~~ 66 (101)
+|+++|||||+++++|+|+|++++||++|. |.+..+|+||+||+||.+ .|.+++++++.+....
T Consensus 487 ~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~ 555 (664)
T 1c4o_A 487 LGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQ 555 (664)
T ss_dssp TTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHH
T ss_pred cCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHH
Confidence 478999999999999999999999999997 899999999999999994 8999999988765443
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.51 E-value=1.5e-15 Score=117.61 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=52.1
Q ss_pred CceeEEEEccccccccCCCCccEEE----------EeC-----------CCCCccceeeecceeccCCCcceEEEeeCcc
Q psy7959 3 GEINVITATISFGMGIDRQNVRFVV----------HWG-----------MPSSIPAYYQESGRAGRDGLQSYCRIYHSEH 61 (101)
Q Consensus 3 g~~~vlv~T~~~~~G~d~~~v~~vi----------~~~-----------~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~ 61 (101)
+..+||||||++++|+|++ +++|| ||| +|.+.++|+||+||+|| ++.|. +.|+++.
T Consensus 438 ~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~ 514 (666)
T 3o8b_A 438 IGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPG 514 (666)
T ss_dssp SSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCC
T ss_pred CCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecc
Confidence 5569999999999999996 99998 677 89999999999999999 88899 9998876
Q ss_pred cH
Q psy7959 62 SK 63 (101)
Q Consensus 62 ~~ 63 (101)
+.
T Consensus 515 e~ 516 (666)
T 3o8b_A 515 ER 516 (666)
T ss_dssp CB
T ss_pred hh
Confidence 54
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.50 E-value=4.2e-15 Score=116.73 Aligned_cols=60 Identities=23% Similarity=0.427 Sum_probs=55.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCC-CccceeeecceeccCCCcceEEEeeCcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPS-SIPAYYQESGRAGRDGLQSYCRIYHSEH 61 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~-~~~~~~qr~GR~gR~~~~~~~i~~~~~~ 61 (101)
+|+++|||||+++++|+|+|++++||++|.|. +.++|.||+||+||.|..|.|++++.+.
T Consensus 637 ~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 637 EGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp TTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred CCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 58899999999999999999999999999985 7889999999999999999999999743
No 49
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.50 E-value=5.6e-15 Score=114.06 Aligned_cols=61 Identities=26% Similarity=0.386 Sum_probs=52.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEE----eC-------CCCCccceeeecceeccCCC--cceEEEeeCccc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH----WG-------MPSSIPAYYQESGRAGRDGL--QSYCRIYHSEHS 62 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~----~~-------~p~~~~~~~qr~GR~gR~~~--~~~~i~~~~~~~ 62 (101)
+|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.|. .|.|+.++++.+
T Consensus 336 ~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 336 QRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred cCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 588999999999999999999999999 99 89999999999999999884 699999998765
No 50
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.49 E-value=6.6e-15 Score=118.45 Aligned_cols=66 Identities=27% Similarity=0.350 Sum_probs=50.0
Q ss_pred CCceeEEEE----ccccccccCCCCc-cEEEEeCCC--------------------------------------------
Q psy7959 2 RGEINVITA----TISFGMGIDRQNV-RFVVHWGMP-------------------------------------------- 32 (101)
Q Consensus 2 ~g~~~vlv~----T~~~~~G~d~~~v-~~vi~~~~p-------------------------------------------- 32 (101)
+|+.+|||| |+++++|+|+|+| ++||++|+|
T Consensus 317 ~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1054)
T 1gku_B 317 EGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEV 396 (1054)
T ss_dssp HTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHH
T ss_pred cCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 478999999 9999999999995 999999999
Q ss_pred ---------------------------CCccceeeecceeccCCCcc--eEEEeeCcccHHHHH
Q psy7959 33 ---------------------------SSIPAYYQESGRAGRDGLQS--YCRIYHSEHSKKSLE 67 (101)
Q Consensus 33 ---------------------------~~~~~~~qr~GR~gR~~~~~--~~i~~~~~~~~~~~~ 67 (101)
.+..+|+||+||+||.|..| .++.++...+...+.
T Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~ 460 (1054)
T 1gku_B 397 REILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLS 460 (1054)
T ss_dssp HHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHH
T ss_pred HHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHH
Confidence 78999999999999987664 356666555554443
No 51
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.48 E-value=1.1e-14 Score=112.77 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=60.2
Q ss_pred CCceeEEEEccccccccCCCCccEEEE----eC----CCCCccceeeecceeccCC--CcceEEEeeCcccHHH-HHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH----WG----MPSSIPAYYQESGRAGRDG--LQSYCRIYHSEHSKKS-LEYVI 70 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~----~~----~p~~~~~~~qr~GR~gR~~--~~~~~i~~~~~~~~~~-~~~~~ 70 (101)
+|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| ..|.|+.++++.+... +..++
T Consensus 318 ~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~ 397 (720)
T 2zj8_A 318 KGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYI 397 (720)
T ss_dssp TTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHT
T ss_pred CCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHh
Confidence 588999999999999999999999999 66 5899999999999999998 4689999999877443 33444
Q ss_pred Hc
Q psy7959 71 KT 72 (101)
Q Consensus 71 ~~ 72 (101)
..
T Consensus 398 ~~ 399 (720)
T 2zj8_A 398 FG 399 (720)
T ss_dssp TS
T ss_pred cC
Confidence 33
No 52
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.48 E-value=1.2e-14 Score=113.57 Aligned_cols=58 Identities=26% Similarity=0.131 Sum_probs=54.5
Q ss_pred eeEEEEccccccccCCC--------CccEEEEeCCCCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 5 INVITATISFGMGIDRQ--------NVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~--------~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
-.|+||||+++||+|++ +..+||++++|.+...|.||+||+||.|.+|.++.|++..|
T Consensus 523 g~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 523 GMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp TCEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred CeEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 47999999999999997 56699999999999999999999999999999999999776
No 53
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.46 E-value=2.2e-14 Score=110.74 Aligned_cols=63 Identities=29% Similarity=0.489 Sum_probs=57.5
Q ss_pred CCceeEEEEccccccccCCCCccEEEE----eC---CCCCccceeeecceeccCC--CcceEEEeeCcccHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH----WG---MPSSIPAYYQESGRAGRDG--LQSYCRIYHSEHSKK 64 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~----~~---~p~~~~~~~qr~GR~gR~~--~~~~~i~~~~~~~~~ 64 (101)
+|+++|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| ..|.|+.+++..+.+
T Consensus 320 ~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 320 RGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp TTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred CCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH
Confidence 588999999999999999999999999 76 6899999999999999998 468999999988754
No 54
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.45 E-value=1.4e-14 Score=116.14 Aligned_cols=74 Identities=26% Similarity=0.320 Sum_probs=57.8
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCC---------CCccceeeecceeccCC--CcceEEEeeC--cccHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMP---------SSIPAYYQESGRAGRDG--LQSYCRIYHS--EHSKKSLEY 68 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p---------~~~~~~~qr~GR~gR~~--~~~~~i~~~~--~~~~~~~~~ 68 (101)
+|.++|||||+++++|+|+|+ ..||..++| .++.+|+||+|||||.| ..|.+++++. ..+...++.
T Consensus 423 ~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~ 501 (997)
T 4a4z_A 423 KGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKE 501 (997)
T ss_dssp TTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHH
T ss_pred CCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHH
Confidence 588999999999999999999 555554444 49999999999999998 4588888883 335666666
Q ss_pred HHHcccch
Q psy7959 69 VIKTDTST 76 (101)
Q Consensus 69 ~~~~~~~~ 76 (101)
++......
T Consensus 502 ~i~~~~~~ 509 (997)
T 4a4z_A 502 VTMGVPTR 509 (997)
T ss_dssp HHHSCCCC
T ss_pred HhcCCCcc
Confidence 66655444
No 55
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.45 E-value=2e-14 Score=116.13 Aligned_cols=32 Identities=31% Similarity=0.755 Sum_probs=30.8
Q ss_pred CCceeEEEE----ccccccccCCCC-ccEEEEeCCCC
Q psy7959 2 RGEINVITA----TISFGMGIDRQN-VRFVVHWGMPS 33 (101)
Q Consensus 2 ~g~~~vlv~----T~~~~~G~d~~~-v~~vi~~~~p~ 33 (101)
+|+++|||| |+++++|+|+|+ |++|||||+|.
T Consensus 352 ~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 352 VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 488999999 999999999999 99999999998
No 56
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.44 E-value=2e-14 Score=105.91 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=47.8
Q ss_pred CCceeEEEEccccccccCCCCccE-----------------EEEeCCCCCccceeeecceeccCCCc-ceEEEee
Q psy7959 2 RGEINVITATISFGMGIDRQNVRF-----------------VVHWGMPSSIPAYYQESGRAGRDGLQ-SYCRIYH 58 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~-----------------vi~~~~p~~~~~~~qr~GR~gR~~~~-~~~i~~~ 58 (101)
+|+.+|||||+++++|+|+| +.. ||+++.|.+.++|+||+||+||.|.. +.++++.
T Consensus 215 ~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 215 SEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 47899999999999999999 544 67889999999999999999999854 4555554
No 57
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.42 E-value=2.8e-14 Score=105.10 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=52.1
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCc---ceEEEeeCcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ---SYCRIYHSEH 61 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~---~~~i~~~~~~ 61 (101)
+|+++|||||+++++|+|+|++++||++|.|+++..|+||+||+||.|+. ...+.++..+
T Consensus 392 ~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 392 TGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 37899999999999999999999999999999999999999999999854 3344455544
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.41 E-value=2e-14 Score=106.81 Aligned_cols=58 Identities=24% Similarity=0.129 Sum_probs=52.3
Q ss_pred CCceeEEEEc-cccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEeeC
Q psy7959 2 RGEINVITAT-ISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHS 59 (101)
Q Consensus 2 ~g~~~vlv~T-~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~ 59 (101)
+|+.+||||| +++++|+|+|++++||+++.|+++.+|+|++||+||.|..+.++.+++
T Consensus 395 ~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 395 NGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 4788999999 999999999999999999999999999999999999998764555554
No 59
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.38 E-value=9.7e-14 Score=109.42 Aligned_cols=57 Identities=30% Similarity=0.235 Sum_probs=53.5
Q ss_pred eEEEEccccccccCCCC--------------------------------c-----cEEEEeCCCCCccceeeecceeccC
Q psy7959 6 NVITATISFGMGIDRQN--------------------------------V-----RFVVHWGMPSSIPAYYQESGRAGRD 48 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~~--------------------------------v-----~~vi~~~~p~~~~~~~qr~GR~gR~ 48 (101)
.|+||||+++||+|++. | .+||++++|.+...|.||+||+||.
T Consensus 491 ~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRq 570 (853)
T 2fsf_A 491 AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQ 570 (853)
T ss_dssp CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGG
T ss_pred eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccC
Confidence 79999999999999987 4 6999999999999999999999999
Q ss_pred CCcceEEEeeCccc
Q psy7959 49 GLQSYCRIYHSEHS 62 (101)
Q Consensus 49 ~~~~~~i~~~~~~~ 62 (101)
|.+|.++.|++..|
T Consensus 571 Gd~G~s~~fls~eD 584 (853)
T 2fsf_A 571 GDAGSSRFYLSMED 584 (853)
T ss_dssp GCCEEEEEEEETTS
T ss_pred CCCeeEEEEecccH
Confidence 99999999998665
No 60
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.37 E-value=1.3e-13 Score=110.25 Aligned_cols=53 Identities=21% Similarity=0.148 Sum_probs=49.4
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcceEEEe
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 57 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~ 57 (101)
++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.+.++++
T Consensus 557 ~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~ 609 (968)
T 3dmq_A 557 AQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIH 609 (968)
T ss_dssp CEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEE
T ss_pred ccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999988754444
No 61
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.36 E-value=3.2e-13 Score=94.59 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=39.0
Q ss_pred cee-EEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcce--EEEeeCcccH
Q psy7959 4 EIN-VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSY--CRIYHSEHSK 63 (101)
Q Consensus 4 ~~~-vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~--~i~~~~~~~~ 63 (101)
..+ +|++|+++++|+|++.+++||+||+|+++..|.|++||++|.|+.+. ++.++..+..
T Consensus 164 ~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 164 SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH
T ss_pred CCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 455 78999999999999999999999999999999999999999998644 4556666543
No 62
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.36 E-value=2.4e-13 Score=110.22 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=55.6
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCC-CCCccceeeecceeccCCCcceEEEeeCcc
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGM-PSSIPAYYQESGRAGRDGLQSYCRIYHSEH 61 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~-p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~ 61 (101)
+|+++|||||+++++|+|+|++++||.++. +.++.+|+||+||+||.|+.|.|++++.+.
T Consensus 862 ~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 862 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 588999999999999999999999999887 578999999999999999999999998764
No 63
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.33 E-value=3.4e-13 Score=106.82 Aligned_cols=59 Identities=29% Similarity=0.183 Sum_probs=54.5
Q ss_pred eeEEEEccccccccCCCCc----------------------------------------------------cEEEEeCCC
Q psy7959 5 INVITATISFGMGIDRQNV----------------------------------------------------RFVVHWGMP 32 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v----------------------------------------------------~~vi~~~~p 32 (101)
-.|+||||+++||+|++.+ .+||++++|
T Consensus 509 G~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~p 588 (922)
T 1nkt_A 509 GGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERH 588 (922)
T ss_dssp TCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCC
T ss_pred CeEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCC
Confidence 3799999999999999975 599999999
Q ss_pred CCccceeeecceeccCCCcceEEEeeCcccH
Q psy7959 33 SSIPAYYQESGRAGRDGLQSYCRIYHSEHSK 63 (101)
Q Consensus 33 ~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~~ 63 (101)
.+...|.||.||+||.|.+|.++.|++..|.
T Consensus 589 es~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 589 ESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp SSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred CCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 9999999999999999999999999987654
No 64
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.27 E-value=9.3e-13 Score=110.10 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=63.4
Q ss_pred CCceeEEEEccccccccCCCCccEEEE----eC------CCCCccceeeecceeccCCC--cceEEEeeCcccHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH----WG------MPSSIPAYYQESGRAGRDGL--QSYCRIYHSEHSKKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~----~~------~p~~~~~~~qr~GR~gR~~~--~~~~i~~~~~~~~~~~~~~ 69 (101)
+|.++|||||+++++|+|+|.+++||. || .|.++.+|.||+|||||.|. .|.+++++.+.+...++++
T Consensus 1237 ~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1237 SGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp HTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred CCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 588999999999999999999999984 22 46789999999999999986 5999999999888888888
Q ss_pred HHccc
Q psy7959 70 IKTDT 74 (101)
Q Consensus 70 ~~~~~ 74 (101)
+....
T Consensus 1317 l~~~~ 1321 (1724)
T 4f92_B 1317 LYEPL 1321 (1724)
T ss_dssp TTSCB
T ss_pred hCCCC
Confidence 76644
No 65
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.24 E-value=2.2e-12 Score=97.65 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=42.4
Q ss_pred EEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCC
Q psy7959 7 VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGL 50 (101)
Q Consensus 7 vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~ 50 (101)
|||||+++++|+|+|++++||+++.|.+...|+||+||+||.+.
T Consensus 502 ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 502 ILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 88999999999999999999999999999999999999999874
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.23 E-value=1.1e-12 Score=109.73 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=62.0
Q ss_pred CCceeEEEEccccccccCCCCccEEEE----eC------CCCCccceeeecceeccCCC--cceEEEeeCcccHHHHHHH
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVH----WG------MPSSIPAYYQESGRAGRDGL--QSYCRIYHSEHSKKSLEYV 69 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~----~~------~p~~~~~~~qr~GR~gR~~~--~~~~i~~~~~~~~~~~~~~ 69 (101)
+|.++|||||++++.|+|+|.+++||. |+ .|.++.+|.||+|||||.|. .|.++++....+...+..+
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 689999999999999999999999986 43 36789999999999999874 5999999988887777676
Q ss_pred HHccc
Q psy7959 70 IKTDT 74 (101)
Q Consensus 70 ~~~~~ 74 (101)
+.+..
T Consensus 482 l~~~~ 486 (1724)
T 4f92_B 482 LNQQL 486 (1724)
T ss_dssp TTTCS
T ss_pred HcCCC
Confidence 66543
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.13 E-value=2.1e-11 Score=90.27 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=47.6
Q ss_pred cee-EEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcce--EEEeeCcccHH
Q psy7959 4 EIN-VITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSY--CRIYHSEHSKK 64 (101)
Q Consensus 4 ~~~-vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~~--~i~~~~~~~~~ 64 (101)
..+ +|++|+++++|+|+++++.||++|.|+++..|.|++||++|.|+... ++.++..+..+
T Consensus 393 ~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 393 SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred CCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 344 79999999999999999999999999999999999999999997644 45566655443
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.96 E-value=2.6e-10 Score=87.67 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=50.8
Q ss_pred eEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCcc--eEEEeeCcccH
Q psy7959 6 NVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQS--YCRIYHSEHSK 63 (101)
Q Consensus 6 ~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~~--~~i~~~~~~~~ 63 (101)
.+|++|+++++|+|++++++||++|.|+++..|.|++||++|.|+.. .++.++..+..
T Consensus 471 v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ti 530 (644)
T 1z3i_X 471 IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTI 530 (644)
T ss_dssp EEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred EEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCH
Confidence 58999999999999999999999999999999999999999999754 45556666543
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.2e-09 Score=85.81 Aligned_cols=59 Identities=22% Similarity=0.151 Sum_probs=51.6
Q ss_pred eeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCc--ceEEEeeCcccH
Q psy7959 5 INVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ--SYCRIYHSEHSK 63 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~--~~~i~~~~~~~~ 63 (101)
..+|++|.+++.|+|++.++.||++|.|+++..+.|+.||+.|.|+. -.++.++..+..
T Consensus 626 ~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 626 FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp CCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred eEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 45999999999999999999999999999999999999999999975 445566666643
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.81 E-value=1.4e-09 Score=87.76 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=51.0
Q ss_pred CCceeEEEEccccccccCCCCccEEEEeCCCCCccceeeecceeccCCCc----ceEEEeeC
Q psy7959 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQ----SYCRIYHS 59 (101)
Q Consensus 2 ~g~~~vlv~T~~~~~G~d~~~v~~vi~~~~p~~~~~~~qr~GR~gR~~~~----~~~i~~~~ 59 (101)
+|+++|||+|+++.+|+|+|.+ .++.+|.|.+...|+|++||++|.+.. |.++.|..
T Consensus 647 ~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 647 NQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred cCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 4789999999999999999999 788999999999999999999998753 77777765
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.14 E-value=0.00017 Score=54.40 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=30.1
Q ss_pred eEEE--EccccccccCCCC----ccEEEEeCCCCCcc------------------------------ceeeecceeccCC
Q psy7959 6 NVIT--ATISFGMGIDRQN----VRFVVHWGMPSSIP------------------------------AYYQESGRAGRDG 49 (101)
Q Consensus 6 ~vlv--~T~~~~~G~d~~~----v~~vi~~~~p~~~~------------------------------~~~qr~GR~gR~~ 49 (101)
.||+ +|+.+++|+|+|+ ++.||.+++|.... .+.|-+||.-|..
T Consensus 430 ~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~ 509 (540)
T 2vl7_A 430 YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDP 509 (540)
T ss_dssp CEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCST
T ss_pred eEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCC
Confidence 4666 8999999999997 89999999985322 2358899999987
Q ss_pred CcceEEEeeC
Q psy7959 50 LQSYCRIYHS 59 (101)
Q Consensus 50 ~~~~~i~~~~ 59 (101)
++-.+++++.
T Consensus 510 ~D~g~v~llD 519 (540)
T 2vl7_A 510 NDYVKIYLCD 519 (540)
T ss_dssp TCCCEEEEES
T ss_pred CccEEEEEEc
Confidence 7655566655
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.55 E-value=0.0011 Score=53.34 Aligned_cols=38 Identities=32% Similarity=0.300 Sum_probs=30.0
Q ss_pred EEEEeCCCCCccceeeecceeccCCCcceEEEeeCccc
Q psy7959 25 FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHS 62 (101)
Q Consensus 25 ~vi~~~~p~~~~~~~qr~GR~gR~~~~~~~i~~~~~~~ 62 (101)
+||-...+.|.--=.|-.||+||-|.+|.+..|++-.|
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 66666666666666789999999999999988887554
No 73
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=87.27 E-value=0.36 Score=37.02 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=35.0
Q ss_pred ceeEEEEcc--ccccccCCCC--ccEEEEeCCCCCcc-----------------------------ceeeecceeccCCC
Q psy7959 4 EINVITATI--SFGMGIDRQN--VRFVVHWGMPSSIP-----------------------------AYYQESGRAGRDGL 50 (101)
Q Consensus 4 ~~~vlv~T~--~~~~G~d~~~--v~~vi~~~~p~~~~-----------------------------~~~qr~GR~gR~~~ 50 (101)
+--||++|. .+.+|+|+++ .+.||-.++|.... .+.|-+||.=|..+
T Consensus 494 ~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~ 573 (620)
T 4a15_A 494 DHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAE 573 (620)
T ss_dssp SCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTT
T ss_pred CCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCC
Confidence 346889975 8999999996 77999999885321 12588999989877
Q ss_pred cceEEEeeCc
Q psy7959 51 QSYCRIYHSE 60 (101)
Q Consensus 51 ~~~~i~~~~~ 60 (101)
+-.++++++.
T Consensus 574 D~G~v~llD~ 583 (620)
T 4a15_A 574 DTGACVILDK 583 (620)
T ss_dssp CCEEEEEECG
T ss_pred ceEEEEEEcc
Confidence 7666777654
No 74
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=82.69 E-value=7.9 Score=27.60 Aligned_cols=68 Identities=6% Similarity=-0.164 Sum_probs=43.1
Q ss_pred eeEEEEccccccccC-----CCCccEEEEeCCCCCccc-eeeecceeccC----CCcceEEEeeCcccHHHHHHHHHc
Q psy7959 5 INVITATISFGMGID-----RQNVRFVVHWGMPSSIPA-YYQESGRAGRD----GLQSYCRIYHSEHSKKSLEYVIKT 72 (101)
Q Consensus 5 ~~vlv~T~~~~~G~d-----~~~v~~vi~~~~p~~~~~-~~qr~GR~gR~----~~~~~~i~~~~~~~~~~~~~~~~~ 72 (101)
..|-+.|...+-|++ ....+.||-||.-+++.. .+|..-|+-|. ++.-.++.++..+..++....+..
T Consensus 171 ~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 171 CTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp EEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 444455666666675 567889999998888876 36644444333 345678899988877766555543
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=72.28 E-value=2.8 Score=31.36 Aligned_cols=55 Identities=25% Similarity=0.200 Sum_probs=39.1
Q ss_pred eEEEEc--cccccccCCC-----CccEEEEeCCCCCcc------------------ce------------eeecceeccC
Q psy7959 6 NVITAT--ISFGMGIDRQ-----NVRFVVHWGMPSSIP------------------AY------------YQESGRAGRD 48 (101)
Q Consensus 6 ~vlv~T--~~~~~G~d~~-----~v~~vi~~~~p~~~~------------------~~------------~qr~GR~gR~ 48 (101)
-||+|| ..+.+|+|++ .++.||-.++|.... .| .|-+||.=|.
T Consensus 439 ~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~ 518 (551)
T 3crv_A 439 VLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRD 518 (551)
T ss_dssp CEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCS
T ss_pred eEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccC
Confidence 589998 5899999999 478999998874311 11 3667887777
Q ss_pred CCcceEEEeeCc
Q psy7959 49 GLQSYCRIYHSE 60 (101)
Q Consensus 49 ~~~~~~i~~~~~ 60 (101)
.++-.++++++.
T Consensus 519 ~~D~G~v~llD~ 530 (551)
T 3crv_A 519 VNDKCNVWLLDK 530 (551)
T ss_dssp TTCEEEEEEESG
T ss_pred CCccEEEEEeeh
Confidence 666556666653
No 76
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=40.65 E-value=7.3 Score=17.33 Aligned_cols=8 Identities=63% Similarity=1.062 Sum_probs=6.0
Q ss_pred cceeccCC
Q psy7959 42 SGRAGRDG 49 (101)
Q Consensus 42 ~GR~gR~~ 49 (101)
.||+||.+
T Consensus 9 ~~RtGRRN 16 (26)
T 1cmk_I 9 SGRTGRRN 16 (26)
T ss_pred cCcccccc
Confidence 58888874
No 77
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=20.75 E-value=22 Score=19.67 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=20.3
Q ss_pred cHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHhcC
Q psy7959 62 SKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCEQV 98 (101)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~e~~ 98 (101)
+...++..+.+-..+....+-...+...+|+.||++.
T Consensus 18 ~~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce~~ 54 (73)
T 1got_G 18 EKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEER 54 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhc
Confidence 3444444443333233223345667788999999864
Done!