RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7959
(101 letters)
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 53.7 bits (128), Expect = 1e-10
Identities = 18/56 (32%), Positives = 22/56 (39%)
Query: 2 RGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 57
RGE NV+ AT G+D V VV + S Q GR GR +
Sbjct: 217 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILM 272
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 51.1 bits (122), Expect = 1e-09
Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 7 VITATISFGM-GIDRQNVRFVVHWGMPSSIPAYYQESGRAGR 47
+ T + +P + Q GR GR
Sbjct: 101 IDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR 142
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 44.4 bits (104), Expect = 3e-07
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 1 MRGEINVITATISFGMGIDR-----QNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCR 55
+ GEI+ + T + + R + +RF V G PS + Q
Sbjct: 66 VEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKL 121
Query: 56 IYHSEHSKKSLEYVIKTDTSTKRE 79
+ + + +E ++ E
Sbjct: 122 LAYLYRNVDEIERLLPAVERHIDE 145
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 40.8 bits (95), Expect = 2e-06
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 1 MRGEINVITATISFGMGIDRQN---VRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 57
V+ AT + G + G P + Q GR GR Y +
Sbjct: 75 PTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGRGKPGIYRFVA 134
Query: 58 HSE 60
E
Sbjct: 135 PGE 137
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 41.8 bits (97), Expect = 3e-06
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 7 VITATISFGMGIDRQN-VRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCR-IYHSE 60
VI I R ++ MP + + Q GR GR+ + IY E
Sbjct: 245 VIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGE 300
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 39.6 bits (91), Expect = 1e-05
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
+ +I ++ AT GID ++ V+++ +P + +Y GR GR G + +
Sbjct: 75 KQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINR 134
Query: 61 HSKKSLEYVIKTDTSTKREQLE 82
K L Y I+ K ++L+
Sbjct: 135 REYKKLRY-IERAMKLKIKKLK 155
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 39.3 bits (91), Expect = 1e-05
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSI-----PAYYQESGRAGRDGLQSYCR 55
G + + G+D V V + Q GRA R+
Sbjct: 78 RLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA--RGEV 135
Query: 56 IYHSEHSKKSLEYVIKTDTSTKREQLELKF 85
+++ ++++ I + + +R L+ +
Sbjct: 136 WLYADRVSEAMQRAI--EETNRRRALQEAY 163
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 39.1 bits (90), Expect = 2e-05
Identities = 12/49 (24%), Positives = 15/49 (30%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDG 49
G I ++ GID + V S Y Q GR R
Sbjct: 135 RTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 183
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 39.0 bits (90), Expect = 2e-05
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYY-QESGRAGRDGLQSYCRIYHS 59
G +++ +T +GID +V A Q GR GR G ++YC +
Sbjct: 87 AEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVG 146
Query: 60 EH 61
+
Sbjct: 147 DV 148
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 37.6 bits (86), Expect = 6e-05
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVH-------WGMPSSIPAYYQESGRAGRDGL--Q 51
RG I V+ AT + G++ R +V + + Y Q +GRAGR G+ +
Sbjct: 117 RRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER 176
Query: 52 SYCRIYHSEHSKKSL 66
I + ++
Sbjct: 177 GEAIIIVGKRDREIA 191
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 36.8 bits (84), Expect = 1e-04
Identities = 14/71 (19%), Positives = 31/71 (43%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
G V+ +T + G+D V ++++ +P++ Y GR+GR G + +
Sbjct: 81 RSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 140
Query: 61 HSKKSLEYVIK 71
+ L + +
Sbjct: 141 DDIRILRDIEQ 151
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 36.6 bits (83), Expect = 2e-04
Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
R ++ ++ AT++FGMGI++ NVRFVVH+ +P +I +YYQE+GRAGRDGL + +++
Sbjct: 77 QRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDP 136
Query: 61 HSKKSLEYVIKTDTSTKREQLELKFKNYLSMLEYCE 96
L ++ + + +E N +M + E
Sbjct: 137 ADMAWLRRCLEEKPQGQLQDIERHKLN--AMGAFAE 170
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 34.8 bits (79), Expect = 7e-04
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 3/90 (3%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQES--GRAGRDGLQSYCRIYH 58
G+ +V+ G+D V V + S GR + +
Sbjct: 78 RLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIM 137
Query: 59 SEHSKKSLEYVIKTDTSTKRE-QLELKFKN 87
+ + +T +R Q E K+
Sbjct: 138 YADTITKSMEIAIQETKRRRAIQEEYNRKH 167
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 211
Score = 34.6 bits (79), Expect = 8e-04
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 1 MRGEINVITATISFGMGIDRQNVR-FVVHWGMPSSIPAYYQESGRAGRDGLQSYCRI--- 56
NV+ T GID ++ + +Q GR GR Q+Y +
Sbjct: 80 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 139
Query: 57 ---YHSEHSKKSLEYVIKTD 73
+ ++K LE + +
Sbjct: 140 HPKAMTTDAQKRLEAIASLE 159
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 33.7 bits (76), Expect = 0.001
Identities = 16/71 (22%), Positives = 31/71 (43%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
G ++ +T GID Q V V+++ +P++ Y GR GR G + + +
Sbjct: 74 RSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN 133
Query: 61 HSKKSLEYVIK 71
++ + K
Sbjct: 134 EDVGAMRELEK 144
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 30.2 bits (68), Expect = 0.026
Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 7 VITATISFGMGIDRQNVRFVVHWG--------MPSSIPAYYQESGRAGRDGLQSYCRIYH 58
V AT G G D + V G S Q GR+GR G + Y
Sbjct: 85 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 144
Query: 59 S 59
S
Sbjct: 145 S 145
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 29.2 bits (65), Expect = 0.066
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 21/103 (20%)
Query: 4 EINVITATISFGMGIDRQNVRFVVHWGMPSSIPAY-------------------YQESGR 44
+ + I AT MG + V V+ Q GR
Sbjct: 82 KPDFILATDIAEMGAN-LCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGR 140
Query: 45 AGRDGLQSYC-RIYHSEHSKKSLEYVIKTDTSTKREQLELKFK 86
GR+ + Y S+ + +V + S + +E++
Sbjct: 141 IGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 183
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 27.3 bits (59), Expect = 0.30
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSS------IPAYYQESGRAGRDGLQSYC 54
G+ V+ T GID + V VV++ +P Y GR GR G +
Sbjct: 79 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLA 138
Query: 55 RIYHSEHSKKSLEYVIKTDTSTKREQLE 82
SL I+ ++ +QL
Sbjct: 139 FNMIEVDELPSLMK-IQDHFNSSIKQLN 165
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 26.8 bits (58), Expect = 0.47
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYH 58
E + ++ + G G++ +V + + Q R RDG + C IY
Sbjct: 168 SSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 225
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 26.2 bits (56), Expect = 0.78
Identities = 15/71 (21%), Positives = 31/71 (43%)
Query: 1 MRGEINVITATISFGMGIDRQNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSE 60
+G++ + + GID Q V V+++ P + Y GR+GR G +
Sbjct: 79 RQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINW 138
Query: 61 HSKKSLEYVIK 71
+ + +L + +
Sbjct: 139 NDRFNLYKIEQ 149
>d1j8ra_ b.2.3.3 (A:) PapG adhesin receptor-binding domain
{Escherichia coli [TaxId: 562]}
Length = 196
Score = 23.3 bits (50), Expect = 6.0
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 21 QNVRFVVHWGMPSSIPAYYQESGRAGRDGLQSYCRIY 57
Q +F+ W + + Q +G DG +Y R Y
Sbjct: 24 QRPQFITSWRPGIATVTWNQCNGPEFADGFWAYYREY 60
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p)
{Escherichia coli [TaxId: 562]}
Length = 60
Score = 22.2 bits (48), Expect = 7.0
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 59 SEHSKKSLEYVIKTDTSTKREQLELKFKNYLSMLE 93
E +KS+E + + REQ L+ + L+
Sbjct: 4 KELREKSVEELNTELLNLLREQFNLRMQAASGQLQ 38
>d1bo9a_ a.65.1.1 (A:) Annexin I {Human (Homo sapiens) [TaxId:
9606]}
Length = 73
Score = 22.4 bits (48), Expect = 7.3
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 50 LQSYCRIYHSEHSKKSLEYVIKTDTS 75
Q Y E K L+ +K +
Sbjct: 37 RQQIKAAYLQET-GKPLDETLKKALT 61
>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 132
Score = 22.9 bits (49), Expect = 7.4
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 2 RGEINVITATISFGMGIDRQNVRFVVHW 29
GE V ISF GID++
Sbjct: 14 EGEALVTKEYISFLGGIDKETGIVKEDC 41
>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus
thermophilus [TaxId: 274]}
Length = 51
Score = 21.8 bits (47), Expect = 7.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 63 KKSLEYVIKTDTSTKREQLELKFKNYLSMLE 93
K S + K KRE +EL+F+ + L
Sbjct: 4 KLSPVELEKLVREKKRELMELRFQASIGQLS 34
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 86
Score = 22.2 bits (47), Expect = 9.9
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 28 HWGMPSSIPAYYQESGRAGRDGLQSYCRIYHSEHSKKSLE 67
H G + AG D +S+ I HS +++ L+
Sbjct: 39 HPGGEEILLEQ------AGADATESFEDIGHSPDAREMLK 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.395
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 369,712
Number of extensions: 13910
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 39
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (21.9 bits)