Query psy7965
Match_columns 257
No_of_seqs 231 out of 2162
Neff 11.1
Searched_HMMs 46136
Date Fri Aug 16 23:23:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 100.0 7E-32 1.5E-36 219.5 16.5 257 1-257 82-399 (485)
2 KOG0254|consensus 100.0 2.2E-27 4.8E-32 200.3 21.1 256 1-257 111-426 (513)
3 PF00083 Sugar_tr: Sugar (and 99.9 1.5E-30 3.3E-35 216.8 -13.1 255 1-257 68-380 (451)
4 TIGR00887 2A0109 phosphate:H+ 99.9 1.4E-23 2.9E-28 177.2 12.9 188 1-192 78-319 (502)
5 TIGR00898 2A0119 cation transp 99.9 3E-23 6.5E-28 175.4 14.1 208 1-215 149-375 (505)
6 TIGR01299 synapt_SV2 synaptic 99.9 4.3E-23 9.3E-28 178.1 10.6 188 1-190 224-474 (742)
7 KOG0255|consensus 99.9 6.1E-22 1.3E-26 168.0 16.8 208 1-215 140-370 (521)
8 PRK10077 xylE D-xylose transpo 99.9 1.2E-21 2.6E-26 164.6 17.0 251 1-257 77-395 (479)
9 TIGR00879 SP MFS transporter, 99.9 3.3E-20 7.1E-25 155.5 18.6 215 1-215 93-339 (481)
10 PRK10642 proline/glycine betai 99.9 4.5E-21 9.7E-26 161.4 11.3 100 1-100 79-199 (490)
11 COG2271 UhpC Sugar phosphate p 99.8 1.5E-21 3.3E-26 153.6 5.9 203 2-215 87-308 (448)
12 PRK10406 alpha-ketoglutarate t 99.8 2.7E-20 5.8E-25 154.4 11.1 100 1-100 85-205 (432)
13 PRK09952 shikimate transporter 99.8 3.8E-20 8.2E-25 153.7 10.0 102 1-102 86-208 (438)
14 COG2814 AraJ Arabinose efflux 99.8 1.4E-19 3E-24 143.9 12.0 187 2-215 71-267 (394)
15 TIGR00903 2A0129 major facilit 99.8 3.3E-20 7.1E-25 150.3 7.8 99 1-100 48-151 (368)
16 KOG0253|consensus 99.8 1.2E-19 2.6E-24 140.4 10.3 251 2-257 136-465 (528)
17 KOG2532|consensus 99.8 1.2E-19 2.6E-24 149.6 9.9 192 1-208 95-304 (466)
18 PRK12307 putative sialic acid 99.8 2.2E-19 4.8E-24 148.8 9.7 100 1-100 75-179 (426)
19 PRK15075 citrate-proton sympor 99.8 1.1E-19 2.3E-24 150.9 7.5 100 1-100 78-198 (434)
20 TIGR00893 2A0114 d-galactonate 99.8 8.4E-20 1.8E-24 149.3 3.8 99 2-100 52-155 (399)
21 KOG1330|consensus 99.8 6E-20 1.3E-24 146.1 2.7 100 1-100 90-195 (493)
22 TIGR02332 HpaX 4-hydroxyphenyl 99.8 5E-18 1.1E-22 140.0 13.6 100 1-100 65-175 (412)
23 PRK11663 regulatory protein Uh 99.8 5E-19 1.1E-23 146.9 6.6 100 1-100 80-184 (434)
24 TIGR00891 2A0112 putative sial 99.8 3E-18 6.6E-23 140.8 11.2 100 1-100 69-175 (405)
25 PRK03545 putative arabinose tr 99.8 1.8E-17 4E-22 135.8 13.3 99 2-100 67-170 (390)
26 TIGR00895 2A0115 benzoate tran 99.7 2.4E-18 5.3E-23 141.0 7.2 100 1-100 74-178 (398)
27 TIGR00881 2A0104 phosphoglycer 99.7 6.1E-19 1.3E-23 143.5 3.5 100 1-100 52-157 (379)
28 TIGR00883 2A0106 metabolite-pr 99.7 1.3E-17 2.7E-22 136.5 11.1 100 1-100 57-177 (394)
29 TIGR00894 2A0114euk Na(+)-depe 99.7 6.1E-18 1.3E-22 141.7 8.5 100 1-100 98-205 (465)
30 TIGR00900 2A0121 H+ Antiporter 99.7 8.9E-18 1.9E-22 136.1 9.3 100 1-100 56-165 (365)
31 PRK11551 putative 3-hydroxyphe 99.7 8.9E-18 1.9E-22 138.4 9.2 100 1-100 72-176 (406)
32 PRK09705 cynX putative cyanate 99.7 1.4E-17 3.1E-22 136.5 10.1 99 1-100 66-170 (393)
33 PRK09556 uhpT sugar phosphate 99.7 2.7E-18 5.8E-23 143.8 5.2 100 1-100 86-198 (467)
34 KOG2533|consensus 99.7 2.7E-18 5.8E-23 142.1 4.0 204 2-216 104-330 (495)
35 PRK10213 nepI ribonucleoside t 99.7 5.6E-17 1.2E-21 133.0 11.0 99 2-100 78-181 (394)
36 TIGR00805 oat sodium-independe 99.7 3.3E-17 7.1E-22 141.1 9.0 90 1-90 90-230 (633)
37 KOG0252|consensus 99.7 1.6E-17 3.4E-22 132.2 6.2 255 1-257 106-437 (538)
38 PF07690 MFS_1: Major Facilita 99.7 6.9E-18 1.5E-22 136.1 2.6 99 2-100 55-158 (352)
39 PRK15403 multidrug efflux syst 99.7 1.4E-16 3.1E-21 131.3 9.9 100 1-100 73-177 (413)
40 TIGR00890 2A0111 Oxalate/Forma 99.7 7.5E-17 1.6E-21 131.2 8.0 99 1-100 60-163 (377)
41 TIGR00710 efflux_Bcr_CflA drug 99.7 1.9E-16 4.2E-21 129.4 10.3 100 1-100 62-166 (385)
42 PRK14995 methyl viologen resis 99.7 1.7E-16 3.7E-21 133.9 9.6 100 1-100 63-168 (495)
43 TIGR00711 efflux_EmrB drug res 99.7 9.8E-17 2.1E-21 135.1 7.7 100 1-100 59-163 (485)
44 PRK11273 glpT sn-glycerol-3-ph 99.7 1.9E-16 4.1E-21 132.2 9.2 100 1-100 85-194 (452)
45 TIGR00886 2A0108 nitrite extru 99.7 3.3E-16 7.1E-21 127.2 9.9 86 1-87 59-145 (366)
46 PLN00028 nitrate transmembrane 99.6 1.5E-15 3.3E-20 127.4 11.8 99 1-100 93-205 (476)
47 TIGR00712 glpT glycerol-3-phos 99.6 3.2E-16 7E-21 130.3 7.3 100 1-100 83-192 (438)
48 COG2223 NarK Nitrate/nitrite t 99.6 2.8E-15 6E-20 118.6 11.9 182 1-215 71-271 (417)
49 PRK15034 nitrate/nitrite trans 99.6 1.3E-15 2.8E-20 125.2 10.0 83 1-84 92-179 (462)
50 PRK10091 MFS transport protein 99.6 1.9E-15 4.1E-20 123.5 11.0 99 2-100 61-164 (382)
51 PRK03893 putative sialic acid 99.6 2.1E-15 4.6E-20 127.4 11.1 100 1-100 77-181 (496)
52 PRK11195 lysophospholipid tran 99.6 3E-15 6.5E-20 122.7 10.5 96 1-99 60-159 (393)
53 PRK11646 multidrug resistance 99.6 2.3E-15 4.9E-20 123.7 9.4 100 1-100 68-171 (400)
54 PRK03699 putative transporter; 99.6 2.5E-15 5.4E-20 123.4 9.5 99 2-100 65-169 (394)
55 PRK11102 bicyclomycin/multidru 99.6 6.2E-15 1.3E-19 120.3 11.4 100 1-100 48-152 (377)
56 PRK11043 putative transporter; 99.6 4.1E-15 8.8E-20 122.4 10.4 100 1-100 63-167 (401)
57 TIGR00806 rfc RFC reduced fola 99.6 1.9E-15 4.2E-20 122.7 8.0 97 1-98 84-184 (511)
58 PRK10473 multidrug efflux syst 99.6 5.8E-15 1.3E-19 121.1 10.9 100 1-100 60-164 (392)
59 PRK11652 emrD multidrug resist 99.6 5.7E-15 1.2E-19 121.3 9.1 100 1-100 65-169 (394)
60 TIGR00896 CynX cyanate transpo 99.6 1E-14 2.2E-19 118.2 10.1 97 2-100 58-161 (355)
61 PRK03633 putative MFS family t 99.6 6.9E-15 1.5E-19 120.2 8.7 90 1-90 63-152 (381)
62 TIGR00901 2A0125 AmpG-related 99.6 2.2E-14 4.7E-19 116.2 11.2 99 2-100 44-164 (356)
63 PRK15402 multidrug efflux syst 99.6 1.8E-14 3.8E-19 118.8 10.8 100 1-100 70-174 (406)
64 PRK05122 major facilitator sup 99.6 1.7E-14 3.6E-19 118.7 10.3 100 1-100 73-185 (399)
65 PRK10133 L-fucose transporter; 99.6 4E-14 8.6E-19 117.6 11.6 87 2-88 84-173 (438)
66 TIGR00892 2A0113 monocarboxyla 99.6 9.3E-15 2E-19 122.1 7.5 99 1-100 76-180 (455)
67 TIGR00897 2A0118 polyol permea 99.5 2.7E-14 5.9E-19 117.6 9.7 89 2-90 71-164 (402)
68 PRK12382 putative transporter; 99.5 4E-14 8.6E-19 116.2 9.3 100 1-100 73-185 (392)
69 PRK08633 2-acyl-glycerophospho 99.5 3.8E-14 8.3E-19 131.0 10.2 90 1-90 69-161 (1146)
70 PRK10504 putative transporter; 99.5 1.1E-13 2.3E-18 116.4 11.3 99 2-100 68-171 (471)
71 TIGR00899 2A0120 sugar efflux 99.5 3.1E-14 6.8E-19 116.0 7.7 99 2-100 56-162 (375)
72 PRK10489 enterobactin exporter 99.5 1.3E-13 2.9E-18 114.0 10.8 100 1-100 74-183 (417)
73 PRK06814 acylglycerophosphoeth 99.5 1.4E-13 2.9E-18 127.3 11.6 98 1-98 74-179 (1140)
74 TIGR00885 fucP L-fucose:H+ sym 99.5 2.5E-13 5.4E-18 111.9 11.9 89 1-89 60-151 (410)
75 cd06174 MFS The Major Facilita 99.5 1.7E-13 3.6E-18 110.3 9.3 99 2-100 57-160 (352)
76 PRK10054 putative transporter; 99.5 3.7E-13 8E-18 110.5 10.5 100 1-100 65-168 (395)
77 KOG3764|consensus 99.5 2.3E-14 5.1E-19 112.4 2.9 103 1-103 128-236 (464)
78 PRK09874 drug efflux system pr 99.5 6.2E-13 1.3E-17 109.6 11.4 99 1-100 76-179 (408)
79 PRK11010 ampG muropeptide tran 99.4 1.4E-12 3E-17 110.0 11.7 100 1-100 67-181 (491)
80 KOG2615|consensus 99.4 2.4E-13 5.3E-18 106.2 6.1 88 2-90 91-178 (451)
81 KOG2504|consensus 99.4 5E-13 1.1E-17 111.9 6.5 98 2-100 104-207 (509)
82 PRK11902 ampG muropeptide tran 99.4 5.2E-12 1.1E-16 104.1 11.7 100 1-100 54-168 (402)
83 PRK10207 dipeptide/tripeptide 99.4 1.7E-12 3.6E-17 109.2 7.3 100 1-100 72-180 (489)
84 COG2807 CynX Cyanate permease 99.3 3.5E-12 7.6E-17 99.4 7.9 181 2-215 70-263 (395)
85 PTZ00207 hypothetical protein; 99.3 4.4E-12 9.5E-17 107.4 8.3 99 1-100 83-191 (591)
86 TIGR00880 2_A_01_02 Multidrug 99.3 3.2E-12 6.9E-17 89.1 5.9 99 2-100 21-124 (141)
87 PF06609 TRI12: Fungal trichot 99.3 1.8E-11 4E-16 103.3 10.1 98 2-100 101-203 (599)
88 PRK15011 sugar efflux transpor 99.3 1.8E-11 3.8E-16 100.6 9.8 98 3-100 75-180 (393)
89 TIGR00902 2A0127 phenyl propri 99.3 9.8E-12 2.1E-16 101.7 7.8 95 2-100 62-165 (382)
90 PRK11128 putative 3-phenylprop 99.3 1.4E-11 2.9E-16 100.9 8.5 95 2-100 62-165 (382)
91 PRK10642 proline/glycine betai 99.2 6.9E-12 1.5E-16 105.9 5.0 120 2-122 309-458 (490)
92 COG0738 FucP Fucose permease [ 99.2 7.9E-11 1.7E-15 93.3 10.5 89 2-90 71-162 (422)
93 TIGR00924 yjdL_sub1_fam amino 99.2 1.2E-11 2.5E-16 103.9 6.1 100 1-100 70-178 (475)
94 TIGR00882 2A0105 oligosacchari 99.2 1.2E-10 2.5E-15 95.9 11.2 98 1-100 60-169 (396)
95 PF05977 MFS_3: Transmembrane 99.2 6.9E-10 1.5E-14 93.7 13.5 99 2-100 68-176 (524)
96 TIGR01299 synapt_SV2 synaptic 99.1 5.9E-11 1.3E-15 103.5 5.2 90 1-90 617-706 (742)
97 PRK09584 tppB putative tripept 99.1 1.7E-10 3.6E-15 97.6 6.8 100 1-100 79-187 (500)
98 PRK09528 lacY galactoside perm 99.1 6.4E-10 1.4E-14 92.3 9.8 99 2-100 69-177 (420)
99 TIGR01301 GPH_sucrose GPH fami 99.1 2.7E-10 5.8E-15 94.7 6.7 90 1-90 61-174 (477)
100 PF03137 OATP: Organic Anion T 99.0 2.6E-11 5.7E-16 102.5 -0.2 208 1-215 60-358 (539)
101 PRK05122 major facilitator sup 99.0 5.6E-10 1.2E-14 91.9 6.0 99 2-100 272-375 (399)
102 KOG3626|consensus 99.0 2.4E-09 5.1E-14 91.7 9.8 206 3-215 156-445 (735)
103 TIGR00792 gph sugar (Glycoside 99.0 1.7E-09 3.7E-14 90.1 8.7 100 1-100 57-180 (437)
104 PRK15462 dipeptide/tripeptide 99.0 7.7E-10 1.7E-14 92.4 6.3 100 1-100 67-175 (493)
105 TIGR00889 2A0110 nucleoside tr 98.9 1.2E-09 2.6E-14 90.5 3.8 99 2-100 274-388 (418)
106 PRK09874 drug efflux system pr 98.9 2.3E-09 5.1E-14 88.4 4.9 99 2-100 281-384 (408)
107 PRK09528 lacY galactoside perm 98.9 2.8E-09 6E-14 88.5 5.1 100 1-100 284-389 (420)
108 PRK12382 putative transporter; 98.9 2.3E-09 4.9E-14 88.1 4.6 99 2-100 272-375 (392)
109 TIGR00890 2A0111 Oxalate/Forma 98.8 3.9E-09 8.4E-14 85.9 5.4 100 1-100 262-368 (377)
110 TIGR02718 sider_RhtX_FptX side 98.8 3.4E-08 7.4E-13 81.1 10.3 99 2-100 62-170 (390)
111 cd06174 MFS The Major Facilita 98.8 4.7E-09 1E-13 84.5 5.1 99 2-100 234-338 (352)
112 PF13347 MFS_2: MFS/sugar tran 98.8 4.4E-08 9.5E-13 81.5 9.0 99 2-100 60-184 (428)
113 TIGR00892 2A0113 monocarboxyla 98.7 6.9E-09 1.5E-13 87.0 3.2 99 2-100 299-407 (455)
114 PRK15011 sugar efflux transpor 98.7 3.4E-08 7.3E-13 81.3 6.4 98 2-100 275-377 (393)
115 TIGR00889 2A0110 nucleoside tr 98.7 1.4E-07 3E-12 78.3 9.8 93 2-96 61-163 (418)
116 TIGR00899 2A0120 sugar efflux 98.6 4.2E-08 9.2E-13 80.0 5.5 98 2-100 258-360 (375)
117 PRK09669 putative symporter Ya 98.6 1.1E-07 2.4E-12 79.5 7.6 99 2-100 68-190 (444)
118 TIGR01272 gluP glucose/galacto 98.6 1.5E-07 3.3E-12 74.8 6.6 62 28-89 6-67 (310)
119 PRK11551 putative 3-hydroxyphe 98.6 7.6E-08 1.6E-12 79.5 5.0 89 2-90 278-366 (406)
120 TIGR00891 2A0112 putative sial 98.6 1.4E-07 3.1E-12 77.6 6.2 98 1-98 296-400 (405)
121 TIGR00900 2A0121 H+ Antiporter 98.5 1.2E-07 2.6E-12 76.8 5.1 89 2-90 270-359 (365)
122 TIGR00898 2A0119 cation transp 98.5 1.1E-07 2.4E-12 80.8 4.9 89 2-90 378-468 (505)
123 PRK03633 putative MFS family t 98.5 1.9E-07 4.2E-12 76.5 5.7 97 1-100 257-358 (381)
124 PRK03893 putative sialic acid 98.5 4.2E-08 9E-13 83.2 1.8 99 1-99 333-438 (496)
125 PRK10489 enterobactin exporter 98.5 1.3E-07 2.9E-12 78.4 4.6 99 2-100 282-385 (417)
126 COG2211 MelB Na+/melibiose sym 98.5 7.4E-07 1.6E-11 73.4 8.7 96 5-100 78-193 (467)
127 PRK10077 xylE D-xylose transpo 98.5 2.3E-07 4.9E-12 78.4 5.8 86 2-87 329-419 (479)
128 TIGR00902 2A0127 phenyl propri 98.5 2.3E-07 4.9E-12 76.1 5.5 88 2-90 263-351 (382)
129 TIGR00788 fbt folate/biopterin 98.5 8.9E-07 1.9E-11 74.5 8.9 99 1-100 82-195 (468)
130 TIGR00883 2A0106 metabolite-pr 98.5 1.7E-07 3.7E-12 76.7 4.4 97 2-98 278-385 (394)
131 COG3104 PTR2 Dipeptide/tripept 98.4 6.4E-08 1.4E-12 79.2 1.4 100 1-100 83-192 (498)
132 KOG0253|consensus 98.4 3.5E-07 7.6E-12 72.2 5.2 83 2-88 404-490 (528)
133 TIGR00895 2A0115 benzoate tran 98.4 3.4E-07 7.5E-12 75.0 5.5 88 2-89 308-395 (398)
134 KOG2325|consensus 98.4 7.2E-07 1.6E-11 73.7 6.7 87 3-90 95-187 (488)
135 PRK03545 putative arabinose tr 98.4 8.3E-07 1.8E-11 73.0 7.0 97 2-100 264-366 (390)
136 TIGR00879 SP MFS transporter, 98.4 5.9E-07 1.3E-11 75.4 6.2 100 1-100 341-456 (481)
137 PRK09952 shikimate transporter 98.4 6.4E-07 1.4E-11 74.8 6.0 100 1-100 308-419 (438)
138 PRK10429 melibiose:sodium symp 98.4 3.3E-07 7.1E-12 77.3 4.3 84 1-84 64-159 (473)
139 KOG2563|consensus 98.4 3.6E-06 7.8E-11 68.2 9.6 90 1-90 101-198 (480)
140 KOG4686|consensus 98.3 4.2E-06 9.1E-11 64.1 9.0 84 2-85 102-189 (459)
141 PF05631 DUF791: Protein of un 98.3 2.9E-06 6.2E-11 67.2 8.1 58 2-60 92-150 (354)
142 PRK09556 uhpT sugar phosphate 98.3 1.1E-06 2.4E-11 74.0 5.6 100 1-100 316-435 (467)
143 TIGR00901 2A0125 AmpG-related 98.3 7.1E-07 1.5E-11 72.4 3.9 77 2-78 268-355 (356)
144 TIGR00792 gph sugar (Glycoside 98.3 4.4E-06 9.6E-11 69.7 8.7 89 2-90 280-376 (437)
145 TIGR00887 2A0109 phosphate:H+ 98.3 3E-06 6.5E-11 72.1 7.3 90 1-90 357-450 (502)
146 TIGR00882 2A0105 oligosacchari 98.2 8.7E-07 1.9E-11 73.0 3.8 99 2-100 277-381 (396)
147 TIGR00711 efflux_EmrB drug res 98.2 1.1E-05 2.4E-10 68.2 10.5 89 2-90 314-406 (485)
148 COG0477 ProP Permeases of the 98.2 3.9E-06 8.5E-11 65.9 7.1 100 1-100 61-171 (338)
149 TIGR00893 2A0114 d-galactonate 98.2 1.6E-06 3.4E-11 70.9 4.3 69 31-100 311-385 (399)
150 PF11700 ATG22: Vacuole efflux 98.2 4.7E-06 1E-10 70.0 6.6 90 1-90 339-438 (477)
151 PRK11646 multidrug resistance 98.2 3.6E-06 7.8E-11 69.5 5.7 87 4-90 269-355 (400)
152 PF03209 PUCC: PUCC protein; 98.2 5.7E-05 1.2E-09 61.0 11.9 89 2-90 37-147 (403)
153 PRK10504 putative transporter; 98.1 3.1E-06 6.6E-11 71.4 5.1 89 2-90 320-411 (471)
154 PRK11128 putative 3-phenylprop 98.1 3.8E-06 8.1E-11 68.9 5.3 88 2-90 263-351 (382)
155 PF11700 ATG22: Vacuole efflux 98.1 5.1E-05 1.1E-09 63.8 11.4 89 2-90 93-210 (477)
156 PRK11462 putative transporter; 98.1 3.2E-05 7E-10 65.1 10.2 86 2-87 68-165 (460)
157 PRK09848 glucuronide transport 98.1 1.8E-05 4E-10 66.3 8.5 89 2-90 287-384 (448)
158 TIGR00897 2A0118 polyol permea 98.1 7.7E-06 1.7E-10 67.6 6.1 97 2-100 280-387 (402)
159 PRK10054 putative transporter; 98.1 8.2E-06 1.8E-10 67.3 6.2 98 2-100 267-370 (395)
160 PRK03699 putative transporter; 98.1 4E-06 8.7E-11 69.1 4.2 98 2-100 264-366 (394)
161 PRK14995 methyl viologen resis 98.1 6.1E-06 1.3E-10 70.1 5.4 89 2-90 318-409 (495)
162 KOG2816|consensus 98.1 1.5E-05 3.3E-10 66.4 7.5 88 2-94 85-174 (463)
163 TIGR02332 HpaX 4-hydroxyphenyl 98.1 8E-06 1.7E-10 67.7 5.8 98 1-98 301-405 (412)
164 PRK11273 glpT sn-glycerol-3-ph 98.0 9.4E-06 2E-10 68.2 6.1 100 1-100 311-421 (452)
165 PF07690 MFS_1: Major Facilita 98.0 4E-06 8.6E-11 67.6 3.6 84 2-85 266-352 (352)
166 PRK08633 2-acyl-glycerophospho 98.0 8.6E-06 1.9E-10 76.2 6.2 89 2-90 292-380 (1146)
167 PRK15402 multidrug efflux syst 98.0 1E-05 2.2E-10 67.0 5.8 88 2-90 274-366 (406)
168 PLN00028 nitrate transmembrane 98.0 2.9E-06 6.3E-11 71.7 2.3 99 1-100 310-419 (476)
169 PRK12307 putative sialic acid 98.0 1.2E-05 2.5E-10 67.0 5.6 89 2-90 289-379 (426)
170 PRK09705 cynX putative cyanate 98.0 1.5E-05 3.3E-10 65.6 5.6 97 2-100 263-367 (393)
171 TIGR02718 sider_RhtX_FptX side 97.9 1.3E-05 2.9E-10 65.9 5.1 99 2-100 267-377 (390)
172 PF01770 Folate_carrier: Reduc 97.9 1.4E-05 3E-10 65.0 5.0 88 2-90 64-151 (412)
173 PF13347 MFS_2: MFS/sugar tran 97.9 2.4E-05 5.1E-10 65.3 6.6 89 1-89 282-379 (428)
174 PF05977 MFS_3: Transmembrane 97.9 1.7E-05 3.7E-10 67.4 5.5 99 2-100 277-380 (524)
175 PRK15075 citrate-proton sympor 97.9 1.4E-05 3E-10 66.8 4.5 90 1-90 296-390 (434)
176 PRK10429 melibiose:sodium symp 97.9 8.6E-05 1.9E-09 62.8 9.3 89 2-90 289-389 (473)
177 PRK09584 tppB putative tripept 97.9 2.8E-05 6.1E-10 66.1 6.1 87 2-88 343-438 (500)
178 PF05978 UNC-93: Ion channel r 97.9 4.6E-05 1E-09 53.8 6.1 88 2-90 60-147 (156)
179 TIGR00924 yjdL_sub1_fam amino 97.8 2.7E-05 5.9E-10 65.8 5.4 88 13-100 353-454 (475)
180 PF03825 Nuc_H_symport: Nucleo 97.8 3.1E-05 6.8E-10 63.7 5.6 89 2-90 266-360 (400)
181 TIGR00903 2A0129 major facilit 97.8 2.2E-05 4.7E-10 64.1 4.6 89 2-90 246-338 (368)
182 TIGR00881 2A0104 phosphoglycer 97.8 1.5E-05 3.3E-10 64.8 3.6 66 30-95 308-378 (379)
183 PRK11195 lysophospholipid tran 97.8 6.1E-05 1.3E-09 62.1 7.1 88 2-90 264-352 (393)
184 PRK10406 alpha-ketoglutarate t 97.8 2.8E-05 6E-10 65.0 4.8 78 1-78 301-382 (432)
185 KOG0569|consensus 97.8 0.00024 5.2E-09 59.4 10.2 88 2-90 328-426 (485)
186 COG2270 Permeases of the major 97.8 1.6E-05 3.5E-10 64.2 3.0 90 1-90 310-399 (438)
187 PRK11010 ampG muropeptide tran 97.7 4.6E-05 1E-09 64.7 5.2 99 2-100 282-389 (491)
188 PRK09848 glucuronide transport 97.7 0.00022 4.7E-09 59.9 9.1 88 1-88 66-171 (448)
189 PRK10091 MFS transport protein 97.7 0.00011 2.5E-09 60.2 6.9 98 1-100 257-362 (382)
190 PF01306 LacY_symp: LacY proto 97.7 3.2E-05 6.9E-10 63.2 3.1 99 2-100 282-386 (412)
191 PRK11663 regulatory protein Uh 97.7 5E-05 1.1E-09 63.5 4.2 66 35-100 340-410 (434)
192 PF03092 BT1: BT1 family; Int 97.6 0.00012 2.6E-09 61.1 6.2 99 2-100 47-161 (433)
193 TIGR00710 efflux_Bcr_CflA drug 97.6 0.00019 4.1E-09 58.7 7.1 88 2-90 265-358 (385)
194 PRK09669 putative symporter Ya 97.6 0.0001 2.2E-09 61.8 5.5 89 2-90 287-384 (444)
195 TIGR00896 CynX cyanate transpo 97.6 0.00011 2.5E-09 59.5 5.7 88 2-90 255-344 (355)
196 PRK10213 nepI ribonucleoside t 97.6 0.00019 4.2E-09 59.2 6.2 97 2-100 275-377 (394)
197 PRK11902 ampG muropeptide tran 97.5 0.00015 3.2E-09 60.0 5.2 99 2-100 269-376 (402)
198 PRK15034 nitrate/nitrite trans 97.5 0.00024 5.3E-09 59.3 6.0 87 1-87 308-421 (462)
199 PF03825 Nuc_H_symport: Nucleo 97.5 0.00054 1.2E-08 56.5 7.8 81 2-84 60-141 (400)
200 PRK06814 acylglycerophosphoeth 97.5 0.00012 2.6E-09 68.6 4.5 89 2-90 284-392 (1140)
201 KOG2504|consensus 97.4 0.00015 3.3E-09 61.5 4.3 100 1-100 355-462 (509)
202 COG2211 MelB Na+/melibiose sym 97.4 0.0026 5.7E-08 52.9 10.6 86 2-87 295-389 (467)
203 TIGR01272 gluP glucose/galacto 97.4 0.00027 5.8E-09 56.3 4.4 93 2-97 201-298 (310)
204 COG2270 Permeases of the major 97.3 0.0013 2.8E-08 53.5 7.9 86 2-87 81-170 (438)
205 PRK11462 putative transporter; 97.3 0.0026 5.6E-08 53.7 10.1 90 1-90 285-383 (460)
206 PF06813 Nodulin-like: Nodulin 97.3 0.00051 1.1E-08 52.6 4.8 87 2-89 59-152 (250)
207 TIGR00886 2A0108 nitrite extru 97.2 0.00044 9.4E-09 56.2 4.5 79 1-80 283-365 (366)
208 COG2223 NarK Nitrate/nitrite t 97.2 0.00079 1.7E-08 54.5 5.5 95 1-100 276-387 (417)
209 KOG3762|consensus 97.2 5.8E-05 1.3E-09 62.8 -0.9 99 2-100 429-533 (618)
210 PRK11102 bicyclomycin/multidru 97.2 0.0012 2.5E-08 54.0 6.5 88 2-90 253-345 (377)
211 PRK10207 dipeptide/tripeptide 97.2 0.00045 9.8E-09 58.7 4.2 87 2-88 332-435 (489)
212 PRK10473 multidrug efflux syst 97.2 0.0011 2.3E-08 54.6 6.2 90 2-93 262-353 (392)
213 TIGR00712 glpT glycerol-3-phos 97.1 0.00034 7.3E-09 58.6 3.0 69 32-100 345-419 (438)
214 PRK11043 putative transporter; 97.1 0.0011 2.3E-08 54.8 5.8 88 2-90 261-353 (401)
215 KOG0252|consensus 97.1 0.00076 1.7E-08 55.4 4.4 96 2-100 371-484 (538)
216 TIGR00926 2A1704 Peptide:H+ sy 97.1 0.0022 4.8E-08 56.2 7.5 99 2-100 46-168 (654)
217 PRK10133 L-fucose transporter; 97.1 0.00079 1.7E-08 56.4 4.6 96 2-100 318-419 (438)
218 KOG0254|consensus 97.1 0.0016 3.4E-08 55.8 6.5 83 2-84 352-447 (513)
219 COG2814 AraJ Arabinose efflux 97.1 0.0036 7.7E-08 51.0 8.0 98 1-100 269-372 (394)
220 PF00083 Sugar_tr: Sugar (and 97.0 1.9E-05 4.1E-10 66.3 -5.7 90 1-90 308-407 (451)
221 KOG3764|consensus 97.0 0.00086 1.9E-08 54.1 3.8 99 2-100 329-440 (464)
222 KOG0255|consensus 97.0 0.0011 2.4E-08 56.8 4.8 89 2-90 373-464 (521)
223 TIGR01301 GPH_sucrose GPH fami 96.9 0.0019 4.1E-08 54.4 5.2 89 2-90 328-440 (477)
224 TIGR00885 fucP L-fucose:H+ sym 96.8 0.0011 2.3E-08 55.1 3.5 87 1-90 291-377 (410)
225 KOG3098|consensus 96.8 0.029 6.2E-07 46.9 11.6 85 2-87 73-157 (461)
226 TIGR00788 fbt folate/biopterin 96.8 0.00048 1E-08 58.2 1.3 88 3-90 312-409 (468)
227 PF00854 PTR2: POT family; In 96.7 0.0028 6.2E-08 51.9 5.1 91 10-100 2-109 (372)
228 KOG0637|consensus 96.6 0.0004 8.7E-09 56.8 -0.6 91 5-95 97-207 (498)
229 KOG4686|consensus 96.6 0.0047 1E-07 47.9 4.9 87 2-90 323-410 (459)
230 PRK11652 emrD multidrug resist 96.6 0.0036 7.7E-08 51.6 4.8 59 31-90 298-356 (394)
231 PF02487 CLN3: CLN3 protein; 96.5 0.0073 1.6E-07 49.4 5.9 65 26-90 329-393 (402)
232 PF01306 LacY_symp: LacY proto 96.4 0.0011 2.4E-08 54.4 0.5 87 2-90 66-160 (412)
233 PF03209 PUCC: PUCC protein; 96.1 0.025 5.3E-07 46.2 6.7 88 3-90 269-359 (403)
234 TIGR00894 2A0114euk Na(+)-depe 96.0 0.015 3.3E-07 49.1 5.8 69 31-100 360-436 (465)
235 COG2271 UhpC Sugar phosphate p 95.7 0.0069 1.5E-07 49.4 2.3 100 1-100 310-420 (448)
236 KOG3810|consensus 95.5 0.021 4.7E-07 45.5 4.2 87 3-90 66-152 (433)
237 KOG2816|consensus 95.0 0.042 9.2E-07 46.3 4.8 87 3-90 302-388 (463)
238 PF13000 Acatn: Acetyl-coenzym 94.9 0.13 2.8E-06 43.2 7.2 47 41-87 127-173 (544)
239 COG2807 CynX Cyanate permease 94.7 0.079 1.7E-06 42.7 5.2 95 5-100 270-371 (395)
240 TIGR00769 AAA ADP/ATP carrier 94.6 0.22 4.9E-06 42.1 8.1 89 2-90 67-187 (472)
241 KOG3574|consensus 94.2 0.25 5.4E-06 40.3 7.0 84 4-87 93-188 (510)
242 PF06963 FPN1: Ferroportin1 (F 94.1 3 6.4E-05 35.1 13.4 18 2-19 61-78 (432)
243 PTZ00207 hypothetical protein; 94.0 0.092 2E-06 45.7 4.7 78 5-84 426-503 (591)
244 KOG2615|consensus 93.9 0.11 2.3E-06 42.3 4.5 83 8-90 328-410 (451)
245 KOG3098|consensus 93.8 0.2 4.2E-06 42.1 6.1 85 3-88 306-408 (461)
246 KOG3880|consensus 93.6 0.17 3.6E-06 40.0 5.0 74 17-90 327-400 (409)
247 PRK15462 dipeptide/tripeptide 93.4 0.23 5E-06 42.3 5.9 77 12-88 348-434 (493)
248 KOG4332|consensus 92.2 0.67 1.4E-05 36.1 6.4 70 2-74 95-165 (454)
249 PF02487 CLN3: CLN3 protein; 91.3 0.049 1.1E-06 44.7 -0.4 80 3-87 83-162 (402)
250 PRK15403 multidrug efflux syst 91.2 1.2 2.5E-05 37.2 7.5 59 31-90 311-369 (413)
251 KOG1237|consensus 86.5 1.7 3.7E-05 37.9 5.5 99 2-100 96-231 (571)
252 PF06609 TRI12: Fungal trichot 86.4 2.5 5.4E-05 37.1 6.4 85 5-89 375-462 (599)
253 PF07672 MFS_Mycoplasma: Mycop 86.0 6.3 0.00014 30.5 7.6 37 64-100 2-48 (267)
254 KOG2532|consensus 83.9 1.5 3.3E-05 37.2 3.9 89 7-100 331-433 (466)
255 PF03219 TLC: TLC ATP/ADP tran 83.4 15 0.00032 31.7 9.5 89 2-90 82-202 (491)
256 KOG2533|consensus 82.9 1 2.2E-05 38.5 2.6 96 1-96 331-438 (495)
257 TIGR00939 2a57 Equilibrative N 79.2 2.6 5.7E-05 35.5 3.7 60 30-89 370-429 (437)
258 PF11947 DUF3464: Protein of u 77.0 11 0.00023 26.6 5.5 52 30-84 95-146 (153)
259 COG0738 FucP Fucose permease [ 75.1 3.2 6.9E-05 34.3 3.0 85 3-90 296-380 (422)
260 TIGR00939 2a57 Equilibrative N 74.0 32 0.0007 29.1 8.8 52 31-87 105-156 (437)
261 KOG1479|consensus 74.0 10 0.00023 31.4 5.6 59 30-88 341-399 (406)
262 COG3104 PTR2 Dipeptide/tripept 73.6 6.5 0.00014 33.5 4.5 78 12-89 364-451 (498)
263 PF06963 FPN1: Ferroportin1 (F 73.5 12 0.00026 31.6 6.0 89 2-90 316-414 (432)
264 PF01733 Nucleoside_tran: Nucl 71.2 1.1 2.4E-05 35.8 -0.4 59 30-88 246-304 (309)
265 KOG3097|consensus 66.0 12 0.00026 30.2 4.3 61 2-63 81-141 (390)
266 PF06779 DUF1228: Protein of u 57.5 16 0.00035 22.9 3.0 33 3-35 51-83 (85)
267 COG1288 Predicted membrane pro 51.7 26 0.00056 29.4 4.0 24 7-30 132-156 (481)
268 PF06645 SPC12: Microsomal sig 44.3 73 0.0016 19.4 4.8 36 29-64 35-70 (76)
269 KOG1237|consensus 41.5 32 0.00069 30.3 3.4 59 32-90 458-516 (571)
270 TIGR01666 YCCS hypothetical me 38.6 3.2E+02 0.0069 25.1 10.1 46 4-49 51-98 (704)
271 KOG0637|consensus 38.5 10 0.00023 32.0 0.0 52 2-53 355-406 (498)
272 COG5505 Predicted integral mem 34.8 1.4E+02 0.003 24.0 5.4 34 67-100 86-127 (384)
273 PF03092 BT1: BT1 family; Int 34.2 11 0.00024 31.8 -0.5 51 40-90 326-376 (433)
274 COG3202 ATP/ADP translocase [E 30.3 1.4E+02 0.0031 25.8 5.3 37 54-90 170-206 (509)
275 PF04281 Tom22: Mitochondrial 29.3 62 0.0014 22.4 2.6 36 57-92 60-95 (137)
276 PRK03612 spermidine synthase; 29.3 1.5E+02 0.0032 26.0 5.4 54 36-90 114-167 (521)
277 PF11299 DUF3100: Protein of u 29.0 48 0.001 25.2 2.1 53 36-89 175-227 (241)
278 PF11196 DUF2834: Protein of u 27.5 1.2E+02 0.0025 19.6 3.5 16 32-47 71-86 (97)
279 TIGR01667 YCCS_YHJK integral m 27.5 2.6E+02 0.0055 25.7 6.7 46 4-49 51-98 (701)
280 KOG3626|consensus 27.0 1.1E+02 0.0023 28.0 4.2 59 32-90 586-645 (735)
281 COG5336 Uncharacterized protei 26.4 93 0.002 20.5 2.8 34 19-52 60-93 (116)
282 PF08080 zf-RNPHF: RNPHF zinc 24.8 24 0.00053 17.7 0.0 10 3-12 3-12 (36)
283 PF04550 Phage_holin_2: Phage 23.2 1.2E+02 0.0026 19.1 2.8 34 32-65 31-64 (89)
284 PRK10692 hypothetical protein; 22.9 2.1E+02 0.0045 18.0 4.5 21 8-28 3-23 (92)
285 PF08997 UCR_6-4kD: Ubiquinol- 22.4 1.7E+02 0.0036 16.7 3.2 38 59-96 4-42 (56)
286 PF03741 TerC: Integral membra 21.6 1.6E+02 0.0035 21.6 3.7 22 51-72 15-36 (183)
287 COG2076 EmrE Membrane transpor 21.0 1E+02 0.0022 20.3 2.3 27 3-29 24-50 (106)
288 PF13334 DUF4094: Domain of un 21.0 1.3E+02 0.0029 19.3 2.8 12 9-20 3-14 (95)
289 PF12832 MFS_1_like: MFS_1 lik 20.4 69 0.0015 19.5 1.4 31 177-209 16-46 (77)
No 1
>KOG0569|consensus
Probab=100.00 E-value=7e-32 Score=219.50 Aligned_cols=257 Identities=31% Similarity=0.572 Sum_probs=212.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
+++||+|||..+.++.++..++.+++.++ +++..++++|++.|+..|......+.|+.|..|++.||......+.+.
T Consensus 82 ~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~ 161 (485)
T KOG0569|consen 82 LLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGV 161 (485)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHH
Confidence 36899999999999999998888887774 679999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhhh-------hHHHHHhhcC---------------ChHHHHh-cCChHHHHHHHHHHhCCccchHHHHHH
Q psy7965 78 TLGVLYVYCLGLS-------TYTVIAIGCL---------------TPIFLMK-SGKPEKAEVSLRYYRGAQYDVATELAA 134 (257)
Q Consensus 78 ~~G~~~~~~~~~~-------~Wr~~~~~~~---------------~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (257)
.+|.+++..++.. .|++.+.+.. +|+||+. +++.++|++.++++++++++.++..+.
T Consensus 162 ~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~ 241 (485)
T KOG0569|consen 162 VIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEM 241 (485)
T ss_pred HHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHH
Confidence 9999999877765 6998876665 9999998 899999999999999876543332222
Q ss_pred HH--HHHHHhhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcC-CCCChhhHHHHHHHhhhhh
Q psy7965 135 IQ--KEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAG-STLDPSISAIIVGVVQCIV 211 (257)
Q Consensus 135 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 211 (257)
.+ ++.+.+++++.+++++++++.+++...+.+.+...++++|.+++.+|...++.+.| ....+..++...+.++++.
T Consensus 242 ~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~ 321 (485)
T KOG0569|consen 242 LREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLS 321 (485)
T ss_pred HHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 22 22222233667899999999999999999999999999999999999999999998 3444677888888888888
Q ss_pred hhcc-------------------------------ccCCCc-cccchHHHHHHHHHHHHHhhccccccceeeccccCC
Q psy7965 212 TGLS-------------------------------NSGSDV-SSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA 257 (257)
Q Consensus 212 ~~~~-------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~ 257 (257)
++++ ...... ....+..+++.+++...|++|.+|++|.+.+|++|+
T Consensus 322 t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~ 399 (485)
T KOG0569|consen 322 TLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ 399 (485)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc
Confidence 8887 011111 223344567888899999999999999999999996
No 2
>KOG0254|consensus
Probab=99.96 E-value=2.2e-27 Score=200.26 Aligned_cols=256 Identities=35% Similarity=0.663 Sum_probs=209.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++|++|||++++++.+...++.+++++++|+..++++|++.|+|.|......+.|++|+.|++.||...+..+....+|
T Consensus 111 ~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~G 190 (513)
T KOG0254|consen 111 RLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIG 190 (513)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh------hHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhC-CccchHHHHHHHHHH
Q psy7965 81 VLYVYCLGLS------TYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRG-AQYDVATELAAIQKE 138 (257)
Q Consensus 81 ~~~~~~~~~~------~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 138 (257)
.+++..++.. +||..+.+.. +|+|+..+++.+++.+.+.++++ .+.+.+.+.++.+.+
T Consensus 191 i~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~ 270 (513)
T KOG0254|consen 191 ILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIK 270 (513)
T ss_pred HHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 9999777766 3997765544 99999999999999999999988 344444554444411
Q ss_pred HH-Hh-h-hhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhcc
Q psy7965 139 ID-AA-S-EKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS 215 (257)
Q Consensus 139 ~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
.. +. . +.+..+.++++ |..+++...++.+..++++++.+.+.+|.+.+++..|.+.+....+.+.++.++++++++
T Consensus 271 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~ 349 (513)
T KOG0254|consen 271 LLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVA 349 (513)
T ss_pred HHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 11 11 1 11123566666 568889999999999999999999999999999998855444677777777777776666
Q ss_pred --------------------------------ccCC---CccccchHHHHHHHHHHHHHhhccccccceeeccccCC
Q psy7965 216 --------------------------------NSGS---DVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA 257 (257)
Q Consensus 216 --------------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~ 257 (257)
.... ......+..+++.+++...++.++++++|.+.+|++|.
T Consensus 350 ~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~ 426 (513)
T KOG0254|consen 350 TYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL 426 (513)
T ss_pred HHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH
Confidence 0011 23455677888889999999999999999999999994
No 3
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.94 E-value=1.5e-30 Score=216.79 Aligned_cols=255 Identities=36% Similarity=0.678 Sum_probs=195.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ---NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
+++||+|||+.++++.++..+++++.++++ |++.+.++|++.|++.|...+....++.|..|+++|++..++.+.++
T Consensus 68 ~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~ 147 (451)
T PF00083_consen 68 FLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFW 147 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 478999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhhh-----h---HHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhCCccchHHHHHH
Q psy7965 78 TLGVLYVYCLGLS-----T---YTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAA 134 (257)
Q Consensus 78 ~~G~~~~~~~~~~-----~---Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (257)
.+|.+++..++.. + ||+.+.+.. +|+|+..++|.+|+.+.+++.++++.+ ++|.++
T Consensus 148 ~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~-~~~~~~ 226 (451)
T PF00083_consen 148 ALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIE-DEEIEE 226 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccc-cccccc
Confidence 9999888877654 4 999876665 999999999999999988886554222 222222
Q ss_pred HHHHHHHhhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhc
Q psy7965 135 IQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGL 214 (257)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (257)
..++.++.++++.++++++++++.++++...+.+...+++++.+...+|.+.++++.+.+.+ ...+.+.++..+++.++
T Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~ 305 (451)
T PF00083_consen 227 IKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLL 305 (451)
T ss_pred cccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 22222222223367888998876677888888888888888888888899988887763333 45555556666655555
Q ss_pred c-------------------------ccC---CCcccc----chHHHHHHHHHHHHHhhccccccceeeccccCC
Q psy7965 215 S-------------------------NSG---SDVSSI----AFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA 257 (257)
Q Consensus 215 ~-------------------------~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~ 257 (257)
+ ... ...... ....+.+..++..+++.++++..|.+++|+||+
T Consensus 306 ~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt 380 (451)
T PF00083_consen 306 AIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT 380 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccc
Confidence 5 111 111111 333444555566778888999999999999996
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.90 E-value=1.4e-23 Score=177.15 Aligned_cols=188 Identities=21% Similarity=0.235 Sum_probs=131.6
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ 74 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~ 74 (257)
+++||+|||+++.++.++..++.++.+++++ ++.++++|++.|++.|...+....+++|++|+++|++++++.+
T Consensus 78 ~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~ 157 (502)
T TIGR00887 78 WLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVF 157 (502)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHH
Confidence 3689999999999999999999999888765 7899999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhh----------------------------hhHHHHHhhcC---------------ChHHHHhcCCh
Q psy7965 75 MFLTLGVLYVYCLGL----------------------------STYTVIAIGCL---------------TPIFLMKSGKP 111 (257)
Q Consensus 75 ~~~~~G~~~~~~~~~----------------------------~~Wr~~~~~~~---------------~~~~l~~~~~~ 111 (257)
....+|.++++.++. ++||+.+.+.+ +|+|+..+++.
T Consensus 158 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~ 237 (502)
T TIGR00887 158 AMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKD 237 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcc
Confidence 999998887776542 15999886544 89999888776
Q ss_pred H-HHHHHHHHHhCCccc-hHHHHHHHHHHHHHhhhhhhhHHhhhcCCc---hhHHHHHHHHHHHHhhcccceeehhchHH
Q psy7965 112 E-KAEVSLRYYRGAQYD-VATELAAIQKEIDAASEKKATFSDLFSSRA---NLRGLIVSLGLMIFQQFSGVNTVIFYSND 186 (257)
Q Consensus 112 ~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (257)
+ ++.+.+.+..+.+.+ ..+|.++.++ +++..+.+++++++++. .++.++.....++...+ .++....|.|.
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~p~ 313 (502)
T TIGR00887 238 VEQAASDMSAVLQVKIEAEPDEVEKAST---AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDI-AFYGVNLNQKV 313 (502)
T ss_pred hHHHHHHHHHHhccccccCcccccchhc---cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHccccccHH
Confidence 4 455555555432211 1111111111 11112235777776431 22323322223333322 24567778999
Q ss_pred HHHhcC
Q psy7965 187 IFKSAG 192 (257)
Q Consensus 187 ~~~~~~ 192 (257)
++++.|
T Consensus 314 i~~~~G 319 (502)
T TIGR00887 314 ILSAIG 319 (502)
T ss_pred HHHHHc
Confidence 998776
No 5
>TIGR00898 2A0119 cation transport protein.
Probab=99.90 E-value=3e-23 Score=175.39 Aligned_cols=208 Identities=21% Similarity=0.325 Sum_probs=147.2
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||++++++.++.++++++.++++|++.+++.|++.|++.+...+....++.|++|+++|+.+.++.+.+..+|
T Consensus 149 ~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g 228 (505)
T TIGR00898 149 YLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG 228 (505)
T ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh--hHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhCCccch-HHHHHHHH-HHHHH
Q psy7965 81 VLYVYCLGLS--TYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRGAQYDV-ATELAAIQ-KEIDA 141 (257)
Q Consensus 81 ~~~~~~~~~~--~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~ 141 (257)
.++++.++.. +||+.+++.+ +|+|+..+++.+++.+.+++..+.+... .++..+.+ ++.+.
T Consensus 229 ~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (505)
T TIGR00898 229 LVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLS 308 (505)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhh
Confidence 9999999877 8999887665 6778888888888877776655432211 11111111 11111
Q ss_pred hhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhcc
Q psy7965 142 ASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS 215 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
++.++.++++++++|+.++..+.....++..... ++....+.+ .. +.+......+.++..+++.++.
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~--~~~~~~~~~~~~~~~i~~~~~~ 375 (505)
T TIGR00898 309 SSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS-YYGLVLDLG----NL--GGNIYLDLFISGLVELPAKLIT 375 (505)
T ss_pred hccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHH-HHHHhcccc----cc--CCChHHHHHHHHHHHHHHHHHH
Confidence 1122347789999986666555544444332221 222222222 22 2344555556666666665554
No 6
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.89 E-value=4.3e-23 Score=178.10 Aligned_cols=188 Identities=22% Similarity=0.354 Sum_probs=145.5
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||++++++.++.++++++++++++++.++++|++.|++.|+..+....++.|++|+++|++..++.+.++.+|
T Consensus 224 ~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG 303 (742)
T TIGR01299 224 GLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIG 303 (742)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh------------------hHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhCCccc
Q psy7965 81 VLYVYCLGLS------------------TYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRGAQYD 127 (257)
Q Consensus 81 ~~~~~~~~~~------------------~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
.++++.++.. +||+.+++.+ +|+|+..+++.+++.+.++++++.+..
T Consensus 304 ~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~ 383 (742)
T TIGR01299 304 GIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMR 383 (742)
T ss_pred HHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence 9888765421 5898776654 899999999999999999888765421
Q ss_pred ----hHHHH--HHHHHHH------HHhhhh------------------hhhHHhhhcCCchhHHHHHHHHHHHHhhcccc
Q psy7965 128 ----VATEL--AAIQKEI------DAASEK------------------KATFSDLFSSRANLRGLIVSLGLMIFQQFSGV 177 (257)
Q Consensus 128 ----~~~~~--~~~~~~~------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (257)
..+.. ++.+... +.++.. ..+++++++.+ +++++++.+++++...+. +
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~~-y 461 (742)
T TIGR01299 384 AKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFTLSFG-Y 461 (742)
T ss_pred CcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHHHHHH-H
Confidence 11110 0111000 000000 01355666665 788888888888777764 8
Q ss_pred eeehhchHHHHHh
Q psy7965 178 NTVIFYSNDIFKS 190 (257)
Q Consensus 178 ~~~~~~~~~~~~~ 190 (257)
+.+..|.|.++++
T Consensus 462 ygl~~w~P~~~~~ 474 (742)
T TIGR01299 462 YGLSVWFPDMIKH 474 (742)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999988654
No 7
>KOG0255|consensus
Probab=99.89 E-value=6.1e-22 Score=167.96 Aligned_cols=208 Identities=21% Similarity=0.263 Sum_probs=148.7
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||++++++.++..++.+..++++|++.+++.|++.|++.++...+...+++|++++++|+.++.+....+..|
T Consensus 140 ~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~ 219 (521)
T KOG0255|consen 140 PLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGG 219 (521)
T ss_pred ehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999944555555
Q ss_pred HHHHHHhhhh--hHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhCCc---cchHHHHHHH---HH
Q psy7965 81 VLYVYCLGLS--TYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRGAQ---YDVATELAAI---QK 137 (257)
Q Consensus 81 ~~~~~~~~~~--~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~ 137 (257)
.+..+..++. +||+.+++.. +|+|+..+++.+++.+.+++..+.+ .+..++.+.. ++
T Consensus 220 ~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~ 299 (521)
T KOG0255|consen 220 LMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRP 299 (521)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhH
Confidence 5555555555 8999887765 9999999999999999888876532 2222221111 11
Q ss_pred HHHHhhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhcc
Q psy7965 138 EIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS 215 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
......+++..+.++++.|+.+++++.....++... ..++.-.+. ..+.+.+.+....+.+....++....
T Consensus 300 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~------~~y~gl~~~-~~~lg~~~~~~~~~~~~~~~p~~~~~ 370 (521)
T KOG0255|consen 300 LKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFS------LVYYGLSLN-VSGLGGNIYLNFTLSGLVELPAYFRN 370 (521)
T ss_pred hhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHh------HHHHhhhhh-hhhcCchHHHHHHHHHHHHhhHHHHH
Confidence 111112234568899999877777777777664322 333322221 11234455555555555555554444
No 8
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.88 E-value=1.2e-21 Score=164.65 Aligned_cols=251 Identities=29% Similarity=0.515 Sum_probs=151.0
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFA------------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGA 68 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~ 68 (257)
+++||+|||++++.+.++..++.+..+++ +++..++++|+++|++.|...+....+++|++|+++|++
T Consensus 77 ~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~ 156 (479)
T PRK10077 77 YCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGK 156 (479)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhH
Confidence 36899999999999999999998887763 235678999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhHHHHHHhhh-------------hhHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHH
Q psy7965 69 LGSFFQMFLTLGVLYVYCLGL-------------STYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRY 120 (257)
Q Consensus 69 ~~~~~~~~~~~G~~~~~~~~~-------------~~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~ 120 (257)
++++.+.+..+|.++++.++. .+||+.|++.+ +|.++..+++.+++.+..++
T Consensus 157 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~ 236 (479)
T PRK10077 157 LVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRK 236 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHH
Confidence 999999999999988876643 27999988765 33343333444444333333
Q ss_pred HhCCccchHHHHHHHHHHHHHhhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCC-Chhh
Q psy7965 121 YRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTL-DPSI 199 (257)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 199 (257)
..+.++ .+.+.++.++..++ +....+..+.. ........+....+++..+.+...++.|.++++.|.+. ....
T Consensus 237 ~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~ 310 (479)
T PRK10077 237 IMGNTL-ATQALQEIKHSLDH---GRKTGGKLLMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALL 310 (479)
T ss_pred HcCChh-HHHHHHHHHHHHHH---hhhhhhhhcch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHH
Confidence 322211 11111111111110 00001111111 11122223333444555556677788898888776332 2344
Q ss_pred HHHHHHHhhhhhhhccc-------------------------c--CCCccccchHHHHHHHHHHHHHhhccccccceeec
Q psy7965 200 SAIIVGVVQCIVTGLSN-------------------------S--GSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVG 252 (257)
Q Consensus 200 ~~~~~~~~~~~~~~~~~-------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (257)
.....++..+++.++.. . .............+++.+..+++.++++..+.+++
T Consensus 311 ~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (479)
T PRK10077 311 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS 390 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence 44455555555554440 0 00001111122233344445555566677889999
Q ss_pred cccCC
Q psy7965 253 ELFAA 257 (257)
Q Consensus 253 e~~P~ 257 (257)
|.+|+
T Consensus 391 e~~p~ 395 (479)
T PRK10077 391 EIFPN 395 (479)
T ss_pred hhCCh
Confidence 99984
No 9
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.86 E-value=3.3e-20 Score=155.48 Aligned_cols=215 Identities=32% Similarity=0.554 Sum_probs=136.9
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ---NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
+++||+|||++++.+.++..++.++..+.+ +++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+.
T Consensus 93 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 172 (481)
T TIGR00879 93 WLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAI 172 (481)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHH
Confidence 368999999999999999999999986643 45689999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhh---hh-----hHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhCCccchHHHHHH
Q psy7965 78 TLGVLYVYCLG---LS-----TYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAA 134 (257)
Q Consensus 78 ~~G~~~~~~~~---~~-----~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (257)
.+|.++++.++ .. +||+.|++.+ .|.++..+++.+++.+..++..+.+++..+..++
T Consensus 173 ~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
T TIGR00879 173 TFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDE 252 (481)
T ss_pred HHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHH
Confidence 99999999998 33 8999887754 2233333333333333333332222111111110
Q ss_pred H---HHHHH-HhhhhhhhHHhhhcCCc-hhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCC-ChhhHHHHHHHhh
Q psy7965 135 I---QKEID-AASEKKATFSDLFSSRA-NLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTL-DPSISAIIVGVVQ 208 (257)
Q Consensus 135 ~---~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 208 (257)
. ....+ +.+..+..+.+.++..+ ..++......+..+......+.+.++.|.++++.|.+. ..........+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 332 (481)
T TIGR00879 253 LELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVN 332 (481)
T ss_pred HHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 0 00000 00111122344444321 23444444555555555556777888898888776322 2334444455555
Q ss_pred hhhhhcc
Q psy7965 209 CIVTGLS 215 (257)
Q Consensus 209 ~~~~~~~ 215 (257)
+++.++.
T Consensus 333 ~~~~~~~ 339 (481)
T TIGR00879 333 FAFTFVA 339 (481)
T ss_pred HHHHHHH
Confidence 5555544
No 10
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.85 E-value=4.5e-21 Score=161.38 Aligned_cols=100 Identities=18% Similarity=0.249 Sum_probs=89.5
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYM--------LFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
+++||+|||+++.++.++++++++++++++|+.. ++++|+++|++.|..++....+++|++|+++||++.++
T Consensus 79 ~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~ 158 (490)
T PRK10642 79 MLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSW 158 (490)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHH
Confidence 4789999999999999999999999999999874 89999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhh-------------hhhHHHHHhhcC
Q psy7965 73 FQMFLTLGVLYVYCLG-------------LSTYTVIAIGCL 100 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~-------------~~~Wr~~~~~~~ 100 (257)
.+.+..+|..+++.+. .++||+.|++.+
T Consensus 159 ~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~ 199 (490)
T PRK10642 159 LDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIAL 199 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHH
Confidence 9988888877766432 128999998865
No 11
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.84 E-value=1.5e-21 Score=153.64 Aligned_cols=203 Identities=11% Similarity=0.052 Sum_probs=145.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||.+.|..+.+++++.++.+++++++++...+.+..++.|..+|.-.|.+...++.|+|+++||+..++++.+.++|.
T Consensus 87 ~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGG 166 (448)
T COG2271 87 LSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGG 166 (448)
T ss_pred hcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh--hh-----hHHHHHhhcC-------ChHHHHhcCChHHH-HHHHHHHhCCccchHHHHHHHHHHHHHh--hh
Q psy7965 82 LYVYCLG--LS-----TYTVIAIGCL-------TPIFLMKSGKPEKA-EVSLRYYRGAQYDVATELAAIQKEIDAA--SE 144 (257)
Q Consensus 82 ~~~~~~~--~~-----~Wr~~~~~~~-------~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 144 (257)
.+.+.+. .. +||..|++.+ ...+...+++|++. ....++.++++.+.. +++.+.+ ..
T Consensus 167 al~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~------~~~~~~~~ls~ 240 (448)
T COG2271 167 ALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIY------EEEKENEGLTA 240 (448)
T ss_pred chHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhh------hhhccCCCccH
Confidence 8888777 33 8999999988 33444556665532 111122221111110 0000000 01
Q ss_pred hhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcC--CCCChhhHHHHHHHhhhhhhhcc
Q psy7965 145 KKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAG--STLDPSISAIIVGVVQCIVTGLS 215 (257)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
.+.-++.+++||..|. +++........-+++..|.|.|+.+.. +..++.....++-..+++|++++
T Consensus 241 ~~i~~~YVL~Nk~iW~-----la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~ 308 (448)
T COG2271 241 WQIFVKYVLKNKLIWL-----LALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLA 308 (448)
T ss_pred HHHHHHHHHcChHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 1122344566763332 222222222237889999999999874 34456777778888888888887
No 12
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.83 E-value=2.7e-20 Score=154.43 Aligned_cols=100 Identities=23% Similarity=0.262 Sum_probs=88.9
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIY--------MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
+++||+|||+++..+.++++++++++++++++. .++++|+++|++.|..++...++++|++|+++|+++.++
T Consensus 85 ~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~ 164 (432)
T PRK10406 85 RIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASF 164 (432)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHH
Confidence 368999999999999999999999999988764 699999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhh-------------hhhHHHHHhhcC
Q psy7965 73 FQMFLTLGVLYVYCLG-------------LSTYTVIAIGCL 100 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~-------------~~~Wr~~~~~~~ 100 (257)
.+.+...|.++++.+. .++||+.|++.+
T Consensus 165 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~ 205 (432)
T PRK10406 165 QYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGA 205 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 8888888877766542 238999998866
No 13
>PRK09952 shikimate transporter; Provisional
Probab=99.82 E-value=3.8e-20 Score=153.69 Aligned_cols=102 Identities=20% Similarity=0.200 Sum_probs=91.2
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIY--------MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
+++||+|||+++.++.++++++++++++++|+. .++++|+++|++.|..++....++.|++|+++|++..+.
T Consensus 86 ~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~ 165 (438)
T PRK09952 86 HFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSG 165 (438)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHH
Confidence 368999999999999999999999999999987 588999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhh-------------hhHHHHHhhcCCh
Q psy7965 73 FQMFLTLGVLYVYCLGL-------------STYTVIAIGCLTP 102 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~~-------------~~Wr~~~~~~~~~ 102 (257)
.+.+..+|.+++..+.. ++||+.|++.+.+
T Consensus 166 ~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~ 208 (438)
T PRK09952 166 VQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVL 208 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHH
Confidence 99999999888754431 3899999887743
No 14
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.4e-19 Score=143.92 Aligned_cols=187 Identities=19% Similarity=0.255 Sum_probs=139.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+.||+.++..+.++.++++++++++||+.++++|++.|+..|..++....+.+|..|+++|++++++...+.+++.
T Consensus 71 lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~ 150 (394)
T COG2814 71 LTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT 150 (394)
T ss_pred HHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh-----hHHHHHhhcCC---hHHHHhcCChHHHHHHHHHHhCCccchHHHHHHHHHHHHHhhhhhhhHHhhh
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCLT---PIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLF 153 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (257)
.+|..++.+ |||..|++.+. ...+. ....+.+++.+ +..+.+..+..+.+
T Consensus 151 v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~----------~~~~lP~~~~~------------~~~~~~~~~~~~~l 208 (394)
T COG2814 151 VLGVPLGTFLGQLFGWRATFLAIAVLALLALLL----------LWKLLPPSEIS------------GSLPGPLRTLLRLL 208 (394)
T ss_pred HHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHH----------HHHhCCCccCC------------CCCCcchhHHHHHh
Confidence 988888777 99999988771 11111 00111100000 00011222355778
Q ss_pred cCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhc-C-CCCChhhHHHHHHHhhhhhhhcc
Q psy7965 154 SSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSA-G-STLDPSISAIIVGVVQCIVTGLS 215 (257)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
|+|+.+...+...+ .+.+.+...+|...++++. | +........+.+++..++|+.++
T Consensus 209 ~~p~v~~~l~~t~l-----~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~g 267 (394)
T COG2814 209 RRPGVLLGLLATFL-----FMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLG 267 (394)
T ss_pred cCchHHHHHHHHHH-----HHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 88855543333322 2335677788888888776 3 33345777888888888888888
No 15
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.81 E-value=3.3e-20 Score=150.25 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=80.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+......+.+.....+|++.++++|++.|++++. .......++|++|+++|++++++.+.+.++|
T Consensus 48 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG 126 (368)
T TIGR00903 48 LLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLG 126 (368)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 478999999987766555544433333347999999999999999986 4555666799999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++++.++.. +||+.|.+.+
T Consensus 127 ~~l~~~~~~~l~~~~gWr~~f~~~~ 151 (368)
T TIGR00903 127 IIFALAAGLKIYTAGGLQLLIIPIA 151 (368)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHH
Confidence 9999888777 9999998855
No 16
>KOG0253|consensus
Probab=99.81 E-value=1.2e-19 Score=140.35 Aligned_cols=251 Identities=17% Similarity=0.183 Sum_probs=174.2
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
.+|++|||+.+.+......+...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.
T Consensus 136 ~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~ 213 (528)
T KOG0253|consen 136 SADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQ 213 (528)
T ss_pred ehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHH
Confidence 58999999999999999999999999999999999999999999999 899999999999999999988877 8899999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhCCccc----------hHHH
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRGAQYD----------VATE 131 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 131 (257)
+....+... ||||...... +|++.+.++++++|.+.++++.+.|.. ..++
T Consensus 214 v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~ 293 (528)
T KOG0253|consen 214 VFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDR 293 (528)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhh
Confidence 988888766 8998755444 999999999999999999888765431 1111
Q ss_pred HHHHHHHHH-----HhhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcC--------------
Q psy7965 132 LAAIQKEID-----AASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAG-------------- 192 (257)
Q Consensus 132 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 192 (257)
.++.+.+.+ ..++...+..+++.. +++|+.++....++...++ +|........+++...
T Consensus 294 ~e~e~~~~~~~~~~a~ke~rg~~~nLlsp-~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e 371 (528)
T KOG0253|consen 294 QEQEESDLDDSKSSAAKEVRGGTTNLLSP-KLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELE 371 (528)
T ss_pred hhhhhhchhhhhhccccccccchHhhcCh-HHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHH
Confidence 111111111 112333455666654 4888888888777755444 3333333333222111
Q ss_pred -------CCCChhhHHHHHHHhhhhhhhcc-----ccCCCcc------------------ccchHHHHHHHHHHHHHhhc
Q psy7965 193 -------STLDPSISAIIVGVVQCIVTGLS-----NSGSDVS------------------SIAFLPLISVIMFIVMFSLG 242 (257)
Q Consensus 193 -------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~ 242 (257)
+....+.-.++..+..++|.++. .++++.+ .......+..+..-.+.+.+
T Consensus 372 ~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~ 451 (528)
T KOG0253|consen 372 TRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGA 451 (528)
T ss_pred hhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhch
Confidence 11123455677888888888887 2222211 11222223344444555666
Q ss_pred cccccceeeccccCC
Q psy7965 243 FGPIPWMMVGELFAA 257 (257)
Q Consensus 243 ~~~~~~~~~~e~~P~ 257 (257)
+ ...|+|..|++||
T Consensus 452 f-qvaYvYtPEVyPT 465 (528)
T KOG0253|consen 452 F-QVAYVYTPEVYPT 465 (528)
T ss_pred h-eEEEEecCcccch
Confidence 6 5567999999997
No 17
>KOG2532|consensus
Probab=99.81 E-value=1.2e-19 Score=149.60 Aligned_cols=192 Identities=21% Similarity=0.249 Sum_probs=139.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQN--IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
+++||+|-|+++.++.++.+++++++..+.+ ++.+++.|+++|++.|..+|....+.+.|.|++||++..++...+..
T Consensus 95 ~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q 174 (466)
T KOG2532|consen 95 YLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQ 174 (466)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999998754 55889999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhhh------hHHHHHhhcC-------ChHHHHhcCChHHHHHHHHHHhCCccchHHHHHHHHHHHHHhhh-
Q psy7965 79 LGVLYVYCLGLS------TYTVIAIGCL-------TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASE- 144 (257)
Q Consensus 79 ~G~~~~~~~~~~------~Wr~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 144 (257)
+|.+++..+++. ||++.|++.+ ...++...++|++. +.-.++|.+.+++...+++.
T Consensus 175 ~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h----------~~is~~El~~I~~~k~~~~~~ 244 (466)
T KOG2532|consen 175 LGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH----------PNISEKELKYIEKGKSEAHVK 244 (466)
T ss_pred HHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC----------CCCCHHHHHHHHhcccccccC
Confidence 999888766665 8999999888 22223333333321 11233444444443332222
Q ss_pred --hhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhh
Q psy7965 145 --KKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQ 208 (257)
Q Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (257)
.+.+|+++++++. +..+.+..+....+.+.+..|+|.|+++. .+.+........++..
T Consensus 245 ~~~~vP~~~i~ts~~-----vwai~~~~f~~~~~~~~l~~y~PtY~~~V-L~f~v~~~G~~salP~ 304 (466)
T KOG2532|consen 245 KKPPVPYKAILTSPP-----VWAIWISAFGGNWGFYLLLTYLPTYLKEV-LGFDVRETGFLSALPF 304 (466)
T ss_pred CCCCCCHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hCCChhhhhHHHHHHH
Confidence 3568999999973 33344444444445788999999999987 3444443333333333
No 18
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.80 E-value=2.2e-19 Score=148.77 Aligned_cols=100 Identities=25% Similarity=0.330 Sum_probs=93.0
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++.++++++.+++++++.++++|++.|++.|..++....++.|++|+|+|+++.++.+.+..+|
T Consensus 75 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 154 (426)
T PRK12307 75 LLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIG 154 (426)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++++.+... +||+.+++..
T Consensus 155 ~~~~~~l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 155 NIIAAYFMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHH
Confidence 9998877654 8999988755
No 19
>PRK15075 citrate-proton symporter; Provisional
Probab=99.80 E-value=1.1e-19 Score=150.92 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=85.9
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIY--------MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
+++||+|||++++.+.+++.+++++++++++++ .++++|+++|++.|...+....+++|++|+++|++++++
T Consensus 78 ~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~ 157 (434)
T PRK15075 78 AYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSW 157 (434)
T ss_pred HHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHH
Confidence 368999999999999999999999999999877 468999999999999999889999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhh-------------hhHHHHHhhcC
Q psy7965 73 FQMFLTLGVLYVYCLGL-------------STYTVIAIGCL 100 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~~-------------~~Wr~~~~~~~ 100 (257)
.+.+.++|..+++.++. .+||+.|++..
T Consensus 158 ~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 158 QSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 88776666555444332 28999998754
No 20
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.78 E-value=8.4e-20 Score=149.28 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=93.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||+++..+.++..++..+.++++|++.++++|++.|++.+...+....++.|++|+|+|++.+++.+....+|.
T Consensus 52 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 131 (399)
T TIGR00893 52 LLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG 131 (399)
T ss_pred HHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
++++.++.. +||+.+.+.+
T Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~~~ 155 (399)
T TIGR00893 132 IIGGPLVGWILIHFSWQWAFIIEG 155 (399)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHH
Confidence 999888775 8999887765
No 21
>KOG1330|consensus
Probab=99.78 E-value=6e-20 Score=146.07 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=95.4
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++|||.||.++.+|..++.++++..+++..+|++.++|.+.|+|++...+..+.+++|.+|.++|++++++++...++|
T Consensus 90 yLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvG 169 (493)
T KOG1330|consen 90 YLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVG 169 (493)
T ss_pred HHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh------hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~------~Wr~~~~~~~ 100 (257)
..+|.+.+.. .|||.|...+
T Consensus 170 sglG~vvgs~va~~~~~Wr~af~~~a 195 (493)
T KOG1330|consen 170 SGLGYVVGSVVASLTFWWRWAFRGSA 195 (493)
T ss_pred cceeEEeeeeeccCccceEEEEEeeh
Confidence 9988888776 5999998887
No 22
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.77 E-value=5e-18 Score=139.97 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=92.6
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++.++++++.++++|++.+++.|++.|++.+...+....++.|++|+++|++++++++.+.++|
T Consensus 65 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g 144 (412)
T TIGR02332 65 IMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVT 144 (412)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHhhh-----------hhHHHHHhhcC
Q psy7965 81 VLYVYCLGL-----------STYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~-----------~~Wr~~~~~~~ 100 (257)
..+++.++. .+||+.|.+.+
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~ 175 (412)
T TIGR02332 145 MALGLILSGYILALDGLMALKGWQWLFLLEG 175 (412)
T ss_pred HHHHHHHHHHHHhCCCCCCccchhHHHHHHH
Confidence 988877754 28999998876
No 23
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.77 E-value=5e-19 Score=146.90 Aligned_cols=100 Identities=7% Similarity=-0.013 Sum_probs=93.1
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++.++.++.+++.++.++++|++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+.++|
T Consensus 80 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g 159 (434)
T PRK11663 80 IVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVG 159 (434)
T ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+++.+... +||+.|.+.+
T Consensus 160 ~~~~~~~~~~l~~~~gw~~~f~~~~ 184 (434)
T PRK11663 160 GALIPLVVGAIALHYGWRYGMMIAG 184 (434)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999887665 8999987765
No 24
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.77 E-value=3e-18 Score=140.82 Aligned_cols=100 Identities=16% Similarity=0.265 Sum_probs=92.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||++++.+.++.++++++.+++++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|
T Consensus 69 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g 148 (405)
T TIGR00891 69 LWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVG 148 (405)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh-----h--HHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----T--YTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~--Wr~~~~~~~ 100 (257)
..+++.++.. + ||+.+.+.+
T Consensus 149 ~~~~~~l~~~l~~~~~~~w~~~f~~~~ 175 (405)
T TIGR00891 149 AVVAAQVYSLVVPVWGDGWRALFFISI 175 (405)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 9999888765 4 999987765
No 25
>PRK03545 putative arabinose transporter; Provisional
Probab=99.75 E-value=1.8e-17 Score=135.79 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=93.3
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||+++..+.++..++++.+++++|++.++++|+++|++.+...+....++.|++|+|+|++++++.+.+.++|.
T Consensus 67 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~ 146 (390)
T PRK03545 67 LTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAM 146 (390)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++.++.. +||+.|++.+
T Consensus 147 ~ig~~l~~~l~~~~gw~~~f~~~~ 170 (390)
T PRK03545 147 VLGLPLGRVIGQYLGWRTTFLAIG 170 (390)
T ss_pred HHHhhHHHHHHHHhcHHHHHHHHH
Confidence 999888765 8999998876
No 26
>TIGR00895 2A0115 benzoate transport.
Probab=99.75 E-value=2.4e-18 Score=140.96 Aligned_cols=100 Identities=27% Similarity=0.350 Sum_probs=92.4
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|
T Consensus 74 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 153 (398)
T TIGR00895 74 PLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153 (398)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+++.+... +||..+.+.+
T Consensus 154 ~~~~~~~~~~l~~~~g~~~~~~~~~ 178 (398)
T TIGR00895 154 AAVGGFLAGWLIPVFGWRSLFYVGG 178 (398)
T ss_pred HHHHHHHHHHHhhcccceeehhhhh
Confidence 9999888765 8998887764
No 27
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.74 E-value=6.1e-19 Score=143.53 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=91.6
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|
T Consensus 52 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 131 (379)
T TIGR00881 52 SVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVG 131 (379)
T ss_pred HHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-Hhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVY-CLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~-~~~~~-----~Wr~~~~~~~ 100 (257)
..+++ .++.. +||+.+++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (379)
T TIGR00881 132 GGLLPPLVLFGIAELYSWHWVFIVPG 157 (379)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 99888 34433 8999887665
No 28
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.74 E-value=1.3e-17 Score=136.51 Aligned_cols=100 Identities=26% Similarity=0.351 Sum_probs=89.6
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIY--------MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
+++||+|||+++..+.++..++.++.++++++. .+++.|+++|++.+...+....++.|++|+++|++..++
T Consensus 57 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 136 (394)
T TIGR00883 57 HFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSF 136 (394)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHH
Confidence 468999999999999999999999999988865 488999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhh-------------hhHHHHHhhcC
Q psy7965 73 FQMFLTLGVLYVYCLGL-------------STYTVIAIGCL 100 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~~-------------~~Wr~~~~~~~ 100 (257)
.+.+..+|.++++.+.. .+||+.+.+.+
T Consensus 137 ~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 177 (394)
T TIGR00883 137 QQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSA 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHH
Confidence 99999999988877642 27999887765
No 29
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.74 E-value=6.1e-18 Score=141.74 Aligned_cols=100 Identities=19% Similarity=0.114 Sum_probs=90.0
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFA--QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
+++||+|||+++..+.++.+++++++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++.+.+..
T Consensus 98 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 177 (465)
T TIGR00894 98 YLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQ 177 (465)
T ss_pred HHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999887654 5588899999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhhh------hHHHHHhhcC
Q psy7965 79 LGVLYVYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 79 ~G~~~~~~~~~~------~Wr~~~~~~~ 100 (257)
+|.++++.+... +||+.|++.+
T Consensus 178 ~g~~i~~~l~~~l~~~~~gw~~~f~i~~ 205 (465)
T TIGR00894 178 LGTFIFLPISGWLCESWGGWPMIFYVFG 205 (465)
T ss_pred HHHHHHHHHHHHHHhccCCCCeehhhhh
Confidence 999988888654 7999888776
No 30
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.74 E-value=8.9e-18 Score=136.06 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=92.6
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ-----NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM 75 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 75 (257)
+++||+|||+++..+.++..++.++..+.+ +++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.
T Consensus 56 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (365)
T TIGR00900 56 ALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQA 135 (365)
T ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHH
Confidence 368999999999999999999998888887 999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 76 FLTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 76 ~~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
+..+|.++++.++.. +||+.+++.+
T Consensus 136 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 165 (365)
T TIGR00900 136 VRSLFYIVGPGIGGLMYATLGIKWAIWVDA 165 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999988766 8999887765
No 31
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.74 E-value=8.9e-18 Score=138.36 Aligned_cols=100 Identities=24% Similarity=0.289 Sum_probs=92.7
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|
T Consensus 72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 151 (406)
T PRK11551 72 RLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151 (406)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+++.++.. +||+.+++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (406)
T PRK11551 152 GALASVIGVLAAGDAAWRHIFYVGG 176 (406)
T ss_pred HHHHHHHHHHHccccCHHHHHHHHH
Confidence 9999888755 7999887755
No 32
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.73 E-value=1.4e-17 Score=136.51 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=87.5
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+..+.+++.+++++++|++.+++.|+++|++.+...+....++.|++| ++|+++++++..+...|
T Consensus 66 ~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g 144 (393)
T PRK09705 66 WLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGG 144 (393)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999997 88999999998877777
Q ss_pred HHHHHHhhhh------hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~------~Wr~~~~~~~ 100 (257)
..+++.++.. +||..+.+.+
T Consensus 145 ~~~g~~~~~~l~~~~~~w~~~~~~~~ 170 (393)
T PRK09705 145 GGLGAAITPWLVQHSETWYQTLAWWA 170 (393)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 7777666554 7998765543
No 33
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.73 E-value=2.7e-18 Score=143.84 Aligned_cols=100 Identities=13% Similarity=-0.019 Sum_probs=87.7
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILF-----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM 75 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 75 (257)
+++||+|||+++..+.++++++++..+. ++|++.+++.|++.|++++...+....+++|++|+++||+++++++.
T Consensus 86 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~ 165 (467)
T PRK09556 86 YYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNI 165 (467)
T ss_pred hHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeec
Confidence 4789999999999998888888777665 58999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHhhhh--------hHHHHHhhcC
Q psy7965 76 FLTLGVLYVYCLGLS--------TYTVIAIGCL 100 (257)
Q Consensus 76 ~~~~G~~~~~~~~~~--------~Wr~~~~~~~ 100 (257)
+.++|.++++.+... +||..|.+.+
T Consensus 166 ~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g 198 (467)
T PRK09556 166 SHNLGGAGAGGVALWGANYFFDGHVIGMFIFPS 198 (467)
T ss_pred ccchhhhHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 999999988877643 4787776644
No 34
>KOG2533|consensus
Probab=99.72 E-value=2.7e-18 Score=142.08 Aligned_cols=204 Identities=15% Similarity=0.104 Sum_probs=145.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.||++..+.+..+.+++++.+++....+|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.
T Consensus 104 L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~ 183 (495)
T KOG2533|consen 104 LGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN 183 (495)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh
Confidence 68999999999999999999999998899999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHhhhh-----------hHHHHHhhcCCh-------HHHHhcCChHHHHHHHHHHhCCccchHHHHHHHHHHHHH--
Q psy7965 82 LYVYCLGLS-----------TYTVIAIGCLTP-------IFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDA-- 141 (257)
Q Consensus 82 ~~~~~~~~~-----------~Wr~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 141 (257)
++++++++. ||||.|++.+.. .++...+.|+++. ...+ ++.+-..++.+++...
T Consensus 184 i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~-----fl~~-~ek~~~~~~~~~~~~~~~ 257 (495)
T KOG2533|consen 184 IFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAW-----FLTD-EEKELVVERLRESPSGGI 257 (495)
T ss_pred HHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhcc-----ccch-HHHHHHHHHHHhccCCCc
Confidence 888887654 899999998822 2223344444431 1111 0000001111111111
Q ss_pred -hhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhc-C-CCCChhhHHHHHHHhhhhhhhccc
Q psy7965 142 -ASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSA-G-STLDPSISAIIVGVVQCIVTGLSN 216 (257)
Q Consensus 142 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 216 (257)
++.+...+++.+++|+.|. .....++... ..+++.+|+|.++.+. + ++.++...+....+.++++.+++.
T Consensus 258 ~~~~~~~~~~~a~~dp~vw~----~~l~~~~~~l-v~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag 330 (495)
T KOG2533|consen 258 ENKFKWKGFKEALKDPGVWP----FSLCYFFLKL-VNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAG 330 (495)
T ss_pred ccccCHHHHHHHHhchhHHH----HHHHHHHHhh-ccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHH
Confidence 1134456788899984433 2222222222 3688999999999983 2 345567777778888888888773
No 35
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.71 E-value=5.6e-17 Score=132.98 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=93.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||++++.+.++.+++.++..+++|++.+++.|++.|++.|...+....++.|++|+|+|+++.++...+.++|.
T Consensus 78 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~ 157 (394)
T PRK10213 78 TIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL 157 (394)
T ss_pred HhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++.++.. +||+.|++.+
T Consensus 158 ~ig~~l~~~l~~~~gw~~~f~~~~ 181 (394)
T PRK10213 158 VIAAPLGSFLGELIGWRNVFNAAA 181 (394)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHH
Confidence 999888876 8999998765
No 36
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.71 E-value=3.3e-17 Score=141.06 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=81.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhh--------------------------------------------------
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ-------------------------------------------------- 30 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------------------------------------- 30 (257)
+++||+|||+++.++.++++++++++++.+
T Consensus 90 ~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 169 (633)
T TIGR00805 90 YFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKES 169 (633)
T ss_pred HhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCC
Confidence 478999999999999999999999988763
Q ss_pred -hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 31 -NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 31 -~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
.+..++++|+++|+|.+..++...+++.|++|+++|+++.++++....+|..+++++++.
T Consensus 170 ~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~ 230 (633)
T TIGR00805 170 LMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSF 230 (633)
T ss_pred ceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 245788999999999999999999999999999999999999999999999999887654
No 37
>KOG0252|consensus
Probab=99.71 E-value=1.6e-17 Score=132.17 Aligned_cols=255 Identities=18% Similarity=0.170 Sum_probs=151.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQN-------IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF 73 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~ 73 (257)
+++||+|||+++...++++.+++++++++.. ...+...|++.|+|.|+.+|.+.++.+|...+++||...+..
T Consensus 106 ~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaav 185 (538)
T KOG0252|consen 106 WLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAV 185 (538)
T ss_pred HHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEE
Confidence 5799999999999999999999998887432 568899999999999999999999999999999999999988
Q ss_pred HHHHHHhHHHHHHhhhh--------------------hHHHHHhhcCChHHHHhcC--ChHHHHHHHHHHhCCccchH--
Q psy7965 74 QMFLTLGVLYVYCLGLS--------------------TYTVIAIGCLTPIFLMKSG--KPEKAEVSLRYYRGAQYDVA-- 129 (257)
Q Consensus 74 ~~~~~~G~~~~~~~~~~--------------------~Wr~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~-- 129 (257)
.+.+..|.+.+.+++.. -||..+.+.+.|..+...- +.+|..+......++.+...
T Consensus 186 Fa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d 265 (538)
T KOG0252|consen 186 FAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGD 265 (538)
T ss_pred EEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhc
Confidence 77777776666555422 5999998887443321110 11111111000000000000
Q ss_pred ------HHHHHHHHHHHHhhhhh---hhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCC--CCChh
Q psy7965 130 ------TELAAIQKEIDAASEKK---ATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGS--TLDPS 198 (257)
Q Consensus 130 ------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 198 (257)
.+.++.++.....+.++ ..+...+..+ +-++++..+..++..... .|....++..+++..|. +.+..
T Consensus 266 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDia-fy~~nL~~s~I~~~ig~~~~~~~~ 343 (538)
T KOG0252|consen 266 MKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIA-FYGQNLFQSVIFSAIGVIPSANTY 343 (538)
T ss_pred cccccccccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhh-hhccccHHHHHHHhhccCCCcchH
Confidence 00000000000001111 1233444444 456777777778877776 78888899999987761 11122
Q ss_pred -------hH-HHHHHHhhhhhhhcc---------------------------ccCCCccccchHHHHHHHHHHHHHhhcc
Q psy7965 199 -------IS-AIIVGVVQCIVTGLS---------------------------NSGSDVSSIAFLPLISVIMFIVMFSLGF 243 (257)
Q Consensus 199 -------~~-~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (257)
.. ..+.....++|..+. ..............++..+..++..+|.
T Consensus 344 ~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP 423 (538)
T KOG0252|consen 344 HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP 423 (538)
T ss_pred HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC
Confidence 11 122222233344443 1111101112222334445556667777
Q ss_pred ccccceeeccccCC
Q psy7965 244 GPIPWMMVGELFAA 257 (257)
Q Consensus 244 ~~~~~~~~~e~~P~ 257 (257)
+....++++|.||+
T Consensus 424 n~ttfivpaE~FPa 437 (538)
T KOG0252|consen 424 NATTFIVPAEIFPA 437 (538)
T ss_pred CceeEEeehhhchH
Confidence 77888999999996
No 38
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.69 E-value=6.9e-18 Score=136.11 Aligned_cols=99 Identities=25% Similarity=0.407 Sum_probs=91.3
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||+++..+.++.+++.++..+++|++.++++|++.|++.+...+....++.|++|+|+|++++++.+....+|.
T Consensus 55 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~ 134 (352)
T PF07690_consen 55 LSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGS 134 (352)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhh
Confidence 68999999999999999999977777778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
++++.++.. +||+.+++.+
T Consensus 135 ~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 135 ILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp HHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred hcccchhhhhhhcccccccccccc
Confidence 999999877 8999988877
No 39
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.69 E-value=1.4e-16 Score=131.31 Aligned_cols=100 Identities=18% Similarity=0.282 Sum_probs=91.5
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||++++.+.++.+++++++.+++|++.++++|+++|++.+...+....++.|++|+++|++++++......+|
T Consensus 73 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
T PRK15403 73 PLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVA 152 (413)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999998767777788999999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..++|.++.. +||+.|++.+
T Consensus 153 ~~~g~~lg~~l~~~~gw~~~f~~~~ 177 (413)
T PRK15403 153 PIIGPLSGAALMHFVHWKVLFAIIA 177 (413)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999888865 8999998766
No 40
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.68 E-value=7.5e-17 Score=131.16 Aligned_cols=99 Identities=20% Similarity=0.121 Sum_probs=86.7
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++.+++.+++++++|++.++++|++.|++.+..++.....+.|++| |+|+++.++...+.++|
T Consensus 60 ~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 138 (377)
T TIGR00890 60 LLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLG 138 (377)
T ss_pred HHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchh
Confidence 36899999999999999999999999999999999999999999999888888888889987 67999999999999998
Q ss_pred HHHHHHhh-hh----hHHHHHhhcC
Q psy7965 81 VLYVYCLG-LS----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~-~~----~Wr~~~~~~~ 100 (257)
..+++.+. .. +||+.|.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~f~~~~ 163 (377)
T TIGR00890 139 SFILSPLITSVINLEGVPAAFIYMG 163 (377)
T ss_pred HhHHHHHHHHHHhcccHHHHHHHHH
Confidence 87654443 33 7999988766
No 41
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.68 E-value=1.9e-16 Score=129.37 Aligned_cols=100 Identities=26% Similarity=0.346 Sum_probs=92.9
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+....+|
T Consensus 62 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 141 (385)
T TIGR00710 62 PLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALA 141 (385)
T ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+++.++.. +||+.+.+.+
T Consensus 142 ~~~g~~~~~~l~~~~~~~~~~~~~~ 166 (385)
T TIGR00710 142 PAVAPLLGGYILVWLSWHAIFAFLS 166 (385)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9888888766 8999887765
No 42
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.68 E-value=1.7e-16 Score=133.88 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=91.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccC-CccchhhhhhHHHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIA-ESSIRGALGSFFQMFLTL 79 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~ 79 (257)
+++||+|||++++.+.++..++++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+
T Consensus 63 ~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~ 142 (495)
T PRK14995 63 ALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG 142 (495)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999998888777776765 789999999999999999
Q ss_pred hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 80 GVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 80 G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
|..++|.+++. +||+.|++..
T Consensus 143 g~~~gp~lgg~l~~~~gwr~~f~i~~ 168 (495)
T PRK14995 143 GAAFGPLVGGILLEHFYWGSVFLINV 168 (495)
T ss_pred HHHHHHHHHHHhhccCChHHHHHHHH
Confidence 99999999877 8999998765
No 43
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.67 E-value=9.8e-17 Score=135.12 Aligned_cols=100 Identities=22% Similarity=0.266 Sum_probs=94.1
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||++++.+.++..++.+++++++|++.++++|+++|++.+...+....++.|++|+++|+++.++++.+..+|
T Consensus 59 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 138 (485)
T TIGR00711 59 WLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVA 138 (485)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+++.+++. +||+.|++.+
T Consensus 139 ~~~g~~~~~~l~~~~~w~~~f~~~~ 163 (485)
T TIGR00711 139 PALGPTLGGWIIENYHWRWIFLINV 163 (485)
T ss_pred hhhhhccHhHhccCcCceehhhhhh
Confidence 9999888776 8999988765
No 44
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.67 E-value=1.9e-16 Score=132.21 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=85.6
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ----NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
+++||+|||++++.+.++.+++.+..++++ +++.+++.|++.|++.|...+.....+.|++|+++|++++++++.+
T Consensus 85 ~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 164 (452)
T PRK11273 85 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 164 (452)
T ss_pred hhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 478999999999999999999999888753 6888999999999999998888888899999999999999999999
Q ss_pred HHHhH-HHHHHhhhh-----hHHHHHhhcC
Q psy7965 77 LTLGV-LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~G~-~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++|. +.++++... +||+.|++.+
T Consensus 165 ~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~ 194 (452)
T PRK11273 165 HNVGGGLPPLLFLLGMAWFNDWHAALYMPA 194 (452)
T ss_pred HHhhhhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 98886 445554321 8999998865
No 45
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.67 E-value=3.3e-16 Score=127.25 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=74.0
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL 79 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 79 (257)
+++||+|||+++.++.++..++.++.++++ +++.+++.|++.|++.+. .+....+++|++|+++|+++.++.+...++
T Consensus 59 ~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 137 (366)
T TIGR00886 59 FLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNM 137 (366)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHH
Confidence 368999999999999999999999999999 999999999999998654 566788999999999999999998866666
Q ss_pred hHHHHHHh
Q psy7965 80 GVLYVYCL 87 (257)
Q Consensus 80 G~~~~~~~ 87 (257)
|..+++.+
T Consensus 138 g~~~~~~i 145 (366)
T TIGR00886 138 GGGVAQFV 145 (366)
T ss_pred HHHHHHHH
Confidence 65555444
No 46
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.65 E-value=1.5e-15 Score=127.45 Aligned_cols=99 Identities=10% Similarity=0.076 Sum_probs=81.5
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++.+++.++.+++++++.++++|++.|++.+... ....+++|++|+++|+++.++.+...++|
T Consensus 93 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g 171 (476)
T PLN00028 93 PVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLG 171 (476)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999988643 45567899999999999999987655555
Q ss_pred HHHH----HHhhh----------hhHHHHHhhcC
Q psy7965 81 VLYV----YCLGL----------STYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~----~~~~~----------~~Wr~~~~~~~ 100 (257)
..++ +.+.. .+||+.|++.+
T Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g 205 (476)
T PLN00028 172 GGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG 205 (476)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 5444 33321 27999998877
No 47
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.64 E-value=3.2e-16 Score=130.31 Aligned_cols=100 Identities=18% Similarity=0.064 Sum_probs=86.5
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFA----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
+++||+|||+++..+.++.+++.++.... ++++.+.+.|++.|++.|..++.....+.|++|+++|++++++.+.+
T Consensus 83 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~ 162 (438)
T TIGR00712 83 SVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCA 162 (438)
T ss_pred hhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHH
Confidence 47899999999999999999998887664 46778889999999999999888889999999999999999999999
Q ss_pred HHHhHHHHHHhhhh------hHHHHHhhcC
Q psy7965 77 LTLGVLYVYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~G~~~~~~~~~~------~Wr~~~~~~~ 100 (257)
..+|..+++.+... +||..|++.+
T Consensus 163 ~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~ 192 (438)
T TIGR00712 163 HNIGGGIPPLLVLLGMAWFNDWHAALYFPA 192 (438)
T ss_pred HHhHhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99888877654332 8999988765
No 48
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.64 E-value=2.8e-15 Score=118.64 Aligned_cols=182 Identities=17% Similarity=0.169 Sum_probs=123.9
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQN---IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
++.||+|.|++..++.++..+-++..+++.+ ++++++++++.|++. +.+++...++++++|+|++|.++++.. ..
T Consensus 71 ~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~G 148 (417)
T COG2223 71 FLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AG 148 (417)
T ss_pred hhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cc
Confidence 4689999999999999999999999999754 459999999999964 558888999999999999999999998 77
Q ss_pred HHhHHHHHHhhhh-----h---HHHHHhhcC-------ChHHHHhcCChHHHHHHHHHHhCCccchHHHHHHHHHHHHHh
Q psy7965 78 TLGVLYVYCLGLS-----T---YTVIAIGCL-------TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAA 142 (257)
Q Consensus 78 ~~G~~~~~~~~~~-----~---Wr~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (257)
++|..+..+++.. + ||....+.. ...|+..++.++... +.
T Consensus 149 N~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~-------------------------~~ 203 (417)
T COG2223 149 NLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRA-------------------------SV 203 (417)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhc-------------------------cc
Confidence 7776666555544 6 888776665 333444443333200 00
Q ss_pred hhhh-hhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhcc
Q psy7965 143 SEKK-ATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS 215 (257)
Q Consensus 143 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
++.. ..++.++++++.|. ..+.++..+.+...+..+.|.++++. .+.+..........+.+++++.-
T Consensus 204 ~~~~~~~~~~v~~~~~~W~-----lsllY~~tFG~Fvgfs~~l~~~~~~~-fg~~~~~Ag~~a~~f~~~g~l~R 271 (417)
T COG2223 204 KPQLPAQLKAVFSNKDTWL-----LSLLYFATFGGFVGFSAYLPMYLVTQ-FGLSPVTAGLIAFLFPLIGALAR 271 (417)
T ss_pred cccchhHHHHHhcCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHHHHH
Confidence 1111 34566777775554 23333334445677888999999876 33444444444444444444443
No 49
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.64 E-value=1.3e-15 Score=125.24 Aligned_cols=83 Identities=16% Similarity=0.089 Sum_probs=73.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFA-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM 75 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 75 (257)
++.||+|.|+++.++.++..+.++..+++ ++++.+++.|++.|++ |..++.....+++|+|+++||++.++...
T Consensus 92 ~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g 170 (462)
T PRK15034 92 FMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGG 170 (462)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHH
Confidence 36899999999999999999999999987 7999999999999998 77889999999999999999999999965
Q ss_pred HHHHhHHHH
Q psy7965 76 FLTLGVLYV 84 (257)
Q Consensus 76 ~~~~G~~~~ 84 (257)
..++|..++
T Consensus 171 ~G~~G~~l~ 179 (462)
T PRK15034 171 LGNLGVSVM 179 (462)
T ss_pred HHhhHHHHH
Confidence 555665443
No 50
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.64 E-value=1.9e-15 Score=123.55 Aligned_cols=99 Identities=14% Similarity=0.215 Sum_probs=91.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||+++..+.++.+++.++.++++|++.+++.|++.|++.+...+....++.|++|+++|+++++....+..+|.
T Consensus 61 l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 140 (382)
T PRK10091 61 FSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVAN 140 (382)
T ss_pred HHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++.++.. +||+.|.+.+
T Consensus 141 ~~g~~l~~~l~~~~gwr~~f~~~~ 164 (382)
T PRK10091 141 LLGIPLGTYLSQEFSWRYTFLLIA 164 (382)
T ss_pred HHhccHHHHHhhhccHHHHHHHHH
Confidence 988877655 8999998876
No 51
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.63 E-value=2.1e-15 Score=127.41 Aligned_cols=100 Identities=17% Similarity=0.296 Sum_probs=93.0
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++.+++.++.++++|++.+++.|++.|++.+..++....++.|++|+++|+++.++...+..+|
T Consensus 77 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 156 (496)
T PRK03893 77 AMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIG 156 (496)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+++.+... +||+.|.+..
T Consensus 157 ~~~~~~~~~~l~~~~~w~~~f~~~~ 181 (496)
T PRK03893 157 AVVAAQVYSLVVPVWGWRALFFIGI 181 (496)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999888766 8999987754
No 52
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.62 E-value=3e-15 Score=122.75 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=84.5
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||++++++.++.+++++.+.++.+. ++.|+++|++.+...|...+++.|++|+|+|++++++.+....+|
T Consensus 60 ~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~ 136 (393)
T PRK11195 60 AFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAA 136 (393)
T ss_pred HhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999998887776664 788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh----hHHHHHhhc
Q psy7965 81 VLYVYCLGLS----TYTVIAIGC 99 (257)
Q Consensus 81 ~~~~~~~~~~----~Wr~~~~~~ 99 (257)
.+++|.+++. .|+..+.+.
T Consensus 137 ~~~Gp~lgG~l~~~~~~~~~~i~ 159 (393)
T PRK11195 137 ILLGTVLGGALADPHAEAALAVC 159 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 444444433
No 53
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.62 E-value=2.3e-15 Score=123.75 Aligned_cols=100 Identities=18% Similarity=0.284 Sum_probs=92.5
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++.+++.+...++++++.+++.|++.|++.+...+...+++.|++|+|+|+++.++.+....+|
T Consensus 68 ~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g 147 (400)
T PRK11646 68 AIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAG 147 (400)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred HHHHHHhhhh----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~----~Wr~~~~~~~ 100 (257)
..+++.+++. +||+.|++.+
T Consensus 148 ~~ig~~l~g~l~~~g~~~~f~~~~ 171 (400)
T PRK11646 148 AVIGALLGSWLLQYDFRLVCATGA 171 (400)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999888876 8999888766
No 54
>PRK03699 putative transporter; Provisional
Probab=99.61 E-value=2.5e-15 Score=123.37 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=89.2
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.||+|||+++..+.++..++.++..++++++.+++.|++.|++.|...+....++.|++|+++|+++++..+....+|.
T Consensus 65 l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 144 (394)
T PRK03699 65 LMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAG 144 (394)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999898889999999999999999998888888887
Q ss_pred HHHHHhhhh------hHHHHHhhcC
Q psy7965 82 LYVYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~------~Wr~~~~~~~ 100 (257)
.++|.+... +||+.|.+.+
T Consensus 145 ~~~~~~~~~l~~~~~gw~~~f~~~~ 169 (394)
T PRK03699 145 MIFPIIAAYLLARSIEWYWVYACIG 169 (394)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHH
Confidence 777766543 8999998766
No 55
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.61 E-value=6.2e-15 Score=120.30 Aligned_cols=100 Identities=26% Similarity=0.384 Sum_probs=92.7
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|
T Consensus 48 ~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 127 (377)
T PRK11102 48 PMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIA 127 (377)
T ss_pred hHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+++.++.. +||+.+.+.+
T Consensus 128 ~~~~~~~~~~l~~~~~~~~~~~~~~ 152 (377)
T PRK11102 128 PLLAPIIGGWLLVWFSWHAIFWVLA 152 (377)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHH
Confidence 9999888765 8999887765
No 56
>PRK11043 putative transporter; Provisional
Probab=99.61 E-value=4.1e-15 Score=122.41 Aligned_cols=100 Identities=23% Similarity=0.311 Sum_probs=89.1
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+.+..+.++..++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++..+.......+|
T Consensus 63 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (401)
T PRK11043 63 PLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALS 142 (401)
T ss_pred hHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999988888877888999999999999998888888888
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+++.++.. +||+.+++.+
T Consensus 143 ~~~g~~i~~~l~~~~g~~~~~~~~~ 167 (401)
T PRK11043 143 PALAPLLGAWLLNHFGWQAIFATLF 167 (401)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHH
Confidence 8888877765 8999887765
No 57
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.61 E-value=1.9e-15 Score=122.70 Aligned_cols=97 Identities=16% Similarity=0.289 Sum_probs=90.7
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|+++|... ....++.+|+|+++|+++.++..++..+|
T Consensus 84 lLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG 162 (511)
T TIGR00806 84 LLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLG 162 (511)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHhhhh----hHHHHHhh
Q psy7965 81 VLYVYCLGLS----TYTVIAIG 98 (257)
Q Consensus 81 ~~~~~~~~~~----~Wr~~~~~ 98 (257)
.+++++++.. +||.....
T Consensus 163 ~~Ia~~L~qll~s~gWr~y~~L 184 (511)
T TIGR00806 163 VFLSSVLGQLLVTLGWISYSTL 184 (511)
T ss_pred HHHHHHHHHHHHhcCchhHHHH
Confidence 9999888876 88875433
No 58
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.61 E-value=5.8e-15 Score=121.14 Aligned_cols=100 Identities=20% Similarity=0.312 Sum_probs=91.7
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+.+..+.++..++.++...+++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+....+|
T Consensus 60 ~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~ 139 (392)
T PRK10473 60 KIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCII 139 (392)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999989999999999999999999999999998898
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..++|.++.. +||+.+++.+
T Consensus 140 ~~~~~~i~~~l~~~~g~~~~~~~~~ 164 (392)
T PRK10473 140 PVLAPVLGHLIMLKFPWQSLFYTMA 164 (392)
T ss_pred HHHHHHHHHHHHhCcChHHHHHHHH
Confidence 8888888765 8999887765
No 59
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.59 E-value=5.7e-15 Score=121.26 Aligned_cols=100 Identities=27% Similarity=0.357 Sum_probs=90.6
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+...+....+..|.+++++|+++.+..+.+..+|
T Consensus 65 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (394)
T PRK11652 65 PLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVS 144 (394)
T ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998888888888899999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..++|.++.. +||+.+.+.+
T Consensus 145 ~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 145 PLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHH
Confidence 8888887765 8999888765
No 60
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.58 E-value=1e-14 Score=118.17 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=83.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||+++..+.++..++.+.. .+++.+.+++.|++.|++.+...+....++.|++| ++|+++.++.+.+.++|.
T Consensus 58 l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 135 (355)
T TIGR00896 58 LARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGA 135 (355)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHH
Confidence 6899999999999999888888777 77889999999999999999988888888899886 689999999999988888
Q ss_pred HHHHHhhhh-------hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-------TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-------~Wr~~~~~~~ 100 (257)
.+++.+... +||+.|...+
T Consensus 136 ~i~~~~~~~l~~~~~~~w~~~f~~~~ 161 (355)
T TIGR00896 136 ALAAAATVPLAQHSGGHWQQALAWWA 161 (355)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888766544 3998876654
No 61
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.58 E-value=6.9e-15 Score=120.24 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=83.5
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+.++.+++.+..++++|++.++++|++.|++.+...+.....+.|..++++|+++++.++.+.++|
T Consensus 63 ~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 142 (381)
T PRK03633 63 YVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLG 142 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999988888777889999999999999999999999
Q ss_pred HHHHHHhhhh
Q psy7965 81 VLYVYCLGLS 90 (257)
Q Consensus 81 ~~~~~~~~~~ 90 (257)
..+++.++..
T Consensus 143 ~~~g~~~~~~ 152 (381)
T PRK03633 143 TVLGQLLVSK 152 (381)
T ss_pred HHHHHHHHhc
Confidence 9999988876
No 62
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.57 E-value=2.2e-14 Score=116.25 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=83.3
Q ss_pred ccccc-----CchhHH-HHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965 2 FADKF-----GRKPVI-LAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 2 l~dr~-----Grr~~l-~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
++||+ ||||.+ +.+.++.++.....++. .+.+.+....++.+++.+...+...+++.|++|+|+|+++.++
T Consensus 44 ~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~ 123 (356)
T TIGR00901 44 LVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTI 123 (356)
T ss_pred HHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHH
Confidence 57887 899974 56777777777777776 4566677777888888888889999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhhh-----h--------HHHHHhhcC
Q psy7965 73 FQMFLTLGVLYVYCLGLS-----T--------YTVIAIGCL 100 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~~~-----~--------Wr~~~~~~~ 100 (257)
.+.+..+|.++++.++.. + ||..|++.+
T Consensus 124 ~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~a 164 (356)
T TIGR00901 124 YIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTA 164 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHH
Confidence 999999999999888755 6 999998877
No 63
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.57 E-value=1.8e-14 Score=118.85 Aligned_cols=100 Identities=27% Similarity=0.325 Sum_probs=89.9
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+++..+..+..++.+...++++++.+++.|++.|++.+...+.....+.|++|+++|.+..++......+|
T Consensus 70 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 149 (406)
T PRK15402 70 PLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLA 149 (406)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999888888999999999999999999888877888
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..++|.++.. +||+.+++.+
T Consensus 150 ~~~g~~i~~~l~~~~~w~~~~~~~~ 174 (406)
T PRK15402 150 PLLGPLVGAALIHVLPWRGMFVLFA 174 (406)
T ss_pred HHHHHHHHHHHHHccCccHHHHHHH
Confidence 8888877655 8999988766
No 64
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.57 E-value=1.7e-14 Score=118.72 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=85.9
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFA--------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
+++||+|||++++.+.++.+++.+...++ .++..+++.|++.|++.+...+....++.|+.|+|+|++++++
T Consensus 73 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 152 (399)
T PRK05122 73 RYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISW 152 (399)
T ss_pred hHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhh
Confidence 37899999999999999888877665543 2567899999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 73 FQMFLTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+.+...|..+++.++.. +||+.+.+..
T Consensus 153 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 185 (399)
T PRK05122 153 NGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM 185 (399)
T ss_pred hhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 988888888888887765 8998876655
No 65
>PRK10133 L-fucose transporter; Provisional
Probab=99.56 E-value=4e-14 Score=117.61 Aligned_cols=87 Identities=23% Similarity=0.265 Sum_probs=78.2
Q ss_pred cccccCchhHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLI---LFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
+.||+|||+++..+.++++++++++ ..+++++.++++|+++|+|.|...+....++.|+.|+++|...+++.+..+.
T Consensus 84 l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~ 163 (438)
T PRK10133 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 6899999999999999999999875 4578999999999999999999999999999998888877778899999988
Q ss_pred HhHHHHHHhh
Q psy7965 79 LGVLYVYCLG 88 (257)
Q Consensus 79 ~G~~~~~~~~ 88 (257)
+|..+++.++
T Consensus 164 ~G~~~g~~~g 173 (438)
T PRK10133 164 FGAIIAVVFG 173 (438)
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 66
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.55 E-value=9.3e-15 Score=122.07 Aligned_cols=99 Identities=18% Similarity=0.148 Sum_probs=87.0
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFV-ARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL 79 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 79 (257)
+++||+|||++++.+.++..+++++++++++++.+++ .|++.|++.+...+....++.|+++ ++|+++.++.+.+..+
T Consensus 76 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~ 154 (455)
T TIGR00892 76 ILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPV 154 (455)
T ss_pred HHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccH
Confidence 3689999999999999999999999999999988865 5689999999877777788899996 7899999999999999
Q ss_pred hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 80 GVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 80 G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
|..+++.+... +||+.|++.+
T Consensus 155 g~~~~~~l~~~l~~~~gwr~~f~~~~ 180 (455)
T TIGR00892 155 FLSTLAPLNQYLFESFGWRGSFLILG 180 (455)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 98888877655 8999998877
No 67
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.55 E-value=2.7e-14 Score=117.56 Aligned_cols=89 Identities=9% Similarity=0.124 Sum_probs=76.2
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHH---H-hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLIL---F-AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
++||+|||+++..+.++.++++++.. . .++++.+++.|++.|++.+...+.....+.|++|+++|++++++.+.+.
T Consensus 71 l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 150 (402)
T TIGR00897 71 VAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVY 150 (402)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 68999999999999999998876553 3 3578899999999999988877777888899999999999999999999
Q ss_pred HHhH-HHHHHhhhh
Q psy7965 78 TLGV-LYVYCLGLS 90 (257)
Q Consensus 78 ~~G~-~~~~~~~~~ 90 (257)
++|. ++++.++..
T Consensus 151 ~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 151 SIGIGVFGSYYSSY 164 (402)
T ss_pred HHHHHHHHHHHHHh
Confidence 9986 577777643
No 68
>PRK12382 putative transporter; Provisional
Probab=99.53 E-value=4e-14 Score=116.21 Aligned_cols=100 Identities=22% Similarity=0.222 Sum_probs=84.2
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILF--------AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
+++||+|||++++.+.+...++.+.... .++++.++++|+++|++.+...+...+++.|++|+|+|++++++
T Consensus 73 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~ 152 (392)
T PRK12382 73 RLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSW 152 (392)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhH
Confidence 3689999999999998887766543322 35789999999999999998888888899999999999999999
Q ss_pred HHHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 73 FQMFLTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+.+...|..+++.++.. +||..+.+..
T Consensus 153 ~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~ 185 (392)
T PRK12382 153 NGMAMYGALAAGAPLGLLLHSHFGFAALALTTM 185 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 999999999888888765 8998766543
No 69
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.53 E-value=3.8e-14 Score=130.99 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=79.7
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILF---AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
+++||+|||++++++.++..++.++..+ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.
T Consensus 69 ~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 148 (1146)
T PRK08633 69 FLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFT 148 (1146)
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHH
Confidence 4789999999999988776666555443 5789999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhhh
Q psy7965 78 TLGVLYVYCLGLS 90 (257)
Q Consensus 78 ~~G~~~~~~~~~~ 90 (257)
.+|.++++.++..
T Consensus 149 ~ig~~lg~~l~~~ 161 (1146)
T PRK08633 149 IVAILAGTALFSF 161 (1146)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888765
No 70
>PRK10504 putative transporter; Provisional
Probab=99.52 E-value=1.1e-13 Score=116.39 Aligned_cols=99 Identities=19% Similarity=0.247 Sum_probs=91.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||++++.+.++.+++.+++.++++.+.+++.|+++|++.+...+....++.|++|+++|+++.++.....++|.
T Consensus 68 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (471)
T PRK10504 68 LADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGP 147 (471)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++.+++. +||+.|.+..
T Consensus 148 ~~g~~~~g~l~~~~gw~~~f~~~~ 171 (471)
T PRK10504 148 LLGPALGGLLVEYASWHWIFLINI 171 (471)
T ss_pred HhhhHHHHHHHhhccHHHHHHHHH
Confidence 999888766 8999988754
No 71
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.52 E-value=3.1e-14 Score=115.98 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=81.3
Q ss_pred cccccCchhHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhh--hhHHHHHHH
Q psy7965 2 FADKFGRKPVILA-FCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGAL--GSFFQMFLT 78 (257)
Q Consensus 2 l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~ 78 (257)
++||+|||+.++. +.++..++.++..++++++.+++.|++.|.+.+...+....+..|+.|+++|+.. .+..+.+.+
T Consensus 56 l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (375)
T TIGR00899 56 RSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQIS 135 (375)
T ss_pred HHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHh
Confidence 6899999887654 6666677788888999999999999999988888888888888999888877754 567777788
Q ss_pred HhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 79 LGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 79 ~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
+|..+++.++.. +||+.|++.+
T Consensus 136 ~g~~ig~~~~~~l~~~~~~~~~f~~~~ 162 (375)
T TIGR00899 136 LAWVIGPPLAFWLALGFGFTVMFLTAA 162 (375)
T ss_pred HHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence 888888887765 8999998876
No 72
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.51 E-value=1.3e-13 Score=114.05 Aligned_cols=100 Identities=13% Similarity=0.056 Sum_probs=85.7
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILF-----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM 75 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 75 (257)
+++||+|||+++..+.++.+++.+.... .++++.+++.|++.|++.+...+....++.|+.|+++|+++.++.+.
T Consensus 74 ~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (417)
T PRK10489 74 VLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITML 153 (417)
T ss_pred HHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHH
Confidence 3689999999999988877777665442 46788999999999999888888889999999999999999999999
Q ss_pred HHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 76 FLTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 76 ~~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
...+|..+++.+++. +||+.+.+.+
T Consensus 154 ~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~ 183 (417)
T PRK10489 154 TVRLGSVISPALGGLLIAAGGVAWNYGLAA 183 (417)
T ss_pred HHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999888765 7888887655
No 73
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.50 E-value=1.4e-13 Score=127.25 Aligned_cols=98 Identities=11% Similarity=0.113 Sum_probs=81.6
Q ss_pred CcccccCchhHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 1 PFADKFGRKPVILA---FCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 1 ~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
+++||+|||+++.. +.+...+..+.....++++.++++|+++|++.+...+...+++.|++|+++|++++++.+++.
T Consensus 74 ~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~ 153 (1140)
T PRK06814 74 QLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGT 153 (1140)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHH
Confidence 47899999997643 222333333333345899999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhhh-----hHHHHHhh
Q psy7965 78 TLGVLYVYCLGLS-----TYTVIAIG 98 (257)
Q Consensus 78 ~~G~~~~~~~~~~-----~Wr~~~~~ 98 (257)
++|.+++|.+++. +|++.|..
T Consensus 154 ~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 154 FIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHH
Confidence 9999999999988 89988733
No 74
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.50 E-value=2.5e-13 Score=111.93 Aligned_cols=89 Identities=24% Similarity=0.206 Sum_probs=80.4
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILF---AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
++.||+|||+++..+.++.+++.++... .++++.+++.|++.|+|.|...+....++.|..|+++|++.+++.+...
T Consensus 60 ~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (410)
T TIGR00885 60 IFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFN 139 (410)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHH
Confidence 3689999999999999999999988654 3589999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhh
Q psy7965 78 TLGVLYVYCLGL 89 (257)
Q Consensus 78 ~~G~~~~~~~~~ 89 (257)
++|..+++.++.
T Consensus 140 ~lG~~~g~~i~~ 151 (410)
T TIGR00885 140 PFGSIIGMVVAQ 151 (410)
T ss_pred HHHHHHHHHHHH
Confidence 999988877754
No 75
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.48 E-value=1.7e-13 Score=110.33 Aligned_cols=99 Identities=29% Similarity=0.452 Sum_probs=93.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||+.+..+.++..++.+....+++++.+++.|++.|++.+...+....++.|++|+|+|++..++.+....+|.
T Consensus 57 ~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 136 (352)
T cd06174 57 LSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGA 136 (352)
T ss_pred HHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++.++.. +||+.+.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
T cd06174 137 LLGPLLGGLLAESLGWRWLFLILA 160 (352)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999988877 6999887766
No 76
>PRK10054 putative transporter; Provisional
Probab=99.47 E-value=3.7e-13 Score=110.54 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=90.3
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||++++.+.++..++.++..++++++.++++|.+.|.+.+...+....+..|..|+++|+++.++.+...++|
T Consensus 65 ~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg 144 (395)
T PRK10054 65 ILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIG 144 (395)
T ss_pred HHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999888888778888899999999999999999999999999
Q ss_pred HHHHHHhhhh----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~----~Wr~~~~~~~ 100 (257)
..++|.++.. +||..|.+.+
T Consensus 145 ~~igp~l~~~l~~~g~~~~f~~~~ 168 (395)
T PRK10054 145 WTVGPPLGTLLVMQSINLPFWLAA 168 (395)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHH
Confidence 9999988877 7998887665
No 77
>KOG3764|consensus
Probab=99.46 E-value=2.3e-14 Score=112.43 Aligned_cols=103 Identities=25% Similarity=0.264 Sum_probs=95.2
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccc-hhhhhhHHHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI-RGALGSFFQMFLTL 79 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~-r~~~~~~~~~~~~~ 79 (257)
.+.||+|+|..++++.+.+...++++++..+++.++++|.++|+|.+...+...++++|.+|.++ |++++|+.-.+.++
T Consensus 128 ~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfisl 207 (464)
T KOG3764|consen 128 NLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISL 207 (464)
T ss_pred hhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhc
Confidence 36899999999999999999999999999999999999999999999999999999999999866 79999999999999
Q ss_pred hHHHHHHhhhh-----hHHHHHhhcCChH
Q psy7965 80 GVLYVYCLGLS-----TYTVIAIGCLTPI 103 (257)
Q Consensus 80 G~~~~~~~~~~-----~Wr~~~~~~~~~~ 103 (257)
|.+++|.+++. |-+..|.+.+...
T Consensus 208 G~lvgPpfGGilYe~~Gk~aPFlVL~~v~ 236 (464)
T KOG3764|consen 208 GVLVGPPFGGILYEFAGKSAPFLVLAIVL 236 (464)
T ss_pred cceecCCcccchHhhcCCcCcHHHHHHHH
Confidence 99999999988 7777787777433
No 78
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.46 E-value=6.2e-13 Score=109.64 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=87.9
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||+.+..+.++..++.++..++++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++.+.+..+|
T Consensus 76 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (408)
T PRK09874 76 GLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSG 154 (408)
T ss_pred HHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHH
Confidence 36899999999999999999999999899999999999999999765 45777788999999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++++.++.. +||+.+.+.+
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~~~ 179 (408)
T PRK09874 155 ALLGPLAGGLLADSYGLRPVFFITA 179 (408)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9888888765 8999887766
No 79
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.43 E-value=1.4e-12 Score=109.99 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=85.6
Q ss_pred Cccccc-----CchhH-HHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhh
Q psy7965 1 PFADKF-----GRKPV-ILAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGS 71 (257)
Q Consensus 1 ~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~ 71 (257)
+++||+ |||+. +..+.++.+++....++. ++++.+.+.+++.|++.+...+...++..|++|+|+|+++.+
T Consensus 67 pl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~ 146 (491)
T PRK11010 67 PLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAA 146 (491)
T ss_pred HHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHH
Confidence 468999 99986 667777777877777774 468889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHhhhh------hHHHHHhhcC
Q psy7965 72 FFQMFLTLGVLYVYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 72 ~~~~~~~~G~~~~~~~~~~------~Wr~~~~~~~ 100 (257)
+.+.+..+|.++++.+... |||..|++.+
T Consensus 147 i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a 181 (491)
T PRK11010 147 ISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMA 181 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence 9999999998888765543 7999998876
No 80
>KOG2615|consensus
Probab=99.43 E-value=2.4e-13 Score=106.22 Aligned_cols=88 Identities=28% Similarity=0.459 Sum_probs=81.5
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||++++.|++..++..++.+.+.|+..+...|++.|+..|- ..++.++++|+.++|+|+..++.+...+++|.
T Consensus 91 ~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~r~l~ms~v~~a~~lGf 169 (451)
T KOG2615|consen 91 LSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGF 169 (451)
T ss_pred hhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhhccceeeeeehhhhcch
Confidence 68999999999999999999999999999997777779999998776 45667899999999999999999999999999
Q ss_pred HHHHHhhhh
Q psy7965 82 LYVYCLGLS 90 (257)
Q Consensus 82 ~~~~~~~~~ 90 (257)
++||.++++
T Consensus 170 ilGPmIGgy 178 (451)
T KOG2615|consen 170 ILGPMIGGY 178 (451)
T ss_pred hhcchhhhH
Confidence 999999887
No 81
>KOG2504|consensus
Probab=99.40 E-value=5e-13 Score=111.94 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=88.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVAR-FIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r-~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+.||+|.|++.+.+.++..+|.++..++++++++++.. ++.|+|.|..+......+..+| +++|+.+.++...+.++|
T Consensus 104 l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G 182 (509)
T KOG2504|consen 104 LCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVG 182 (509)
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcc
Confidence 57999999999999999999999999999999988888 7899999999999999999777 578999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++-|.+... |||+.+++.+
T Consensus 183 ~~~~~~l~~~l~~~~G~r~~~l~~~ 207 (509)
T KOG2504|consen 183 TVVFPPLLKYLLSKYGWRGALLIFG 207 (509)
T ss_pred eeeHHHHHHHHHHHhCcHHHHHHHH
Confidence 8877777655 9999888777
No 82
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.38 E-value=5.2e-12 Score=104.07 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=84.2
Q ss_pred Cccccc-----Cchh-HHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhh
Q psy7965 1 PFADKF-----GRKP-VILAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGS 71 (257)
Q Consensus 1 ~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~ 71 (257)
+++||+ |||| .+.++.++.+++.....+. .+++.+++..++.++..+...+...+++.|++|+|+|+++.+
T Consensus 54 ~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~ 133 (402)
T PRK11902 54 PLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAA 133 (402)
T ss_pred HHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHH
Confidence 368999 8876 6888888888888877776 357778888888888888889999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHhhhh------hHHHHHhhcC
Q psy7965 72 FFQMFLTLGVLYVYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 72 ~~~~~~~~G~~~~~~~~~~------~Wr~~~~~~~ 100 (257)
+...+..+|.++++.+... +||..|++.+
T Consensus 134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a 168 (402)
T PRK11902 134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMA 168 (402)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHH
Confidence 9999999998888775543 7999998866
No 83
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.36 E-value=1.7e-12 Score=109.17 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=88.9
Q ss_pred Ccccc-cCchhHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHhhhccccccccceeeeccCCcc--chhhhhhHHHHH
Q psy7965 1 PFADK-FGRKPVILAFCFPYILSWLLILFAQNIYM-LFVARFIAGVGTGGLCAIIPMFIGEIAESS--IRGALGSFFQMF 76 (257)
Q Consensus 1 ~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~ 76 (257)
+++|| +|||++++.+.+++.++.++++++++... +.++|.++|+|.|...+...++++|.+|++ +|+.+.++++.+
T Consensus 72 ~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~ 151 (489)
T PRK10207 72 YVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMS 151 (489)
T ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHH
Confidence 47999 99999999999999999999999876444 558999999999999999999999999887 458889999999
Q ss_pred HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 77 LTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++|..++|.++++ |||+.|++..
T Consensus 152 ~nig~~~g~~l~g~l~~~~gw~~~F~i~~ 180 (489)
T PRK10207 152 INIGSLISLSLAPVIADKFGYSVTYNLCG 180 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 99999999888777 9999998864
No 84
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.34 E-value=3.5e-12 Score=99.40 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=130.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+++|+|.++.+..++++..+|.++.... +...++.+-.+.|.|.+......+.++.+.+|++ -+..++++....++|.
T Consensus 70 Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~a 147 (395)
T COG2807 70 LARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGA 147 (395)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHH
Confidence 6789999999999999999999999887 7888999999999999999999999999999855 5999999999999988
Q ss_pred HHHHHhhhh------hHHHHHhhcCChH------HHHhcCChHHHHHHHHHHhCCccchHHHHHHHHHHHHHhhhhhhhH
Q psy7965 82 LYVYCLGLS------TYTVIAIGCLTPI------FLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATF 149 (257)
Q Consensus 82 ~~~~~~~~~------~Wr~~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (257)
.+++.+... +||....+.+.|. |+....|++ ....+.+..+-
T Consensus 148 aLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~--------------------------~~~~~~~~~~~ 201 (395)
T COG2807 148 ALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ--------------------------AASIATKLVSV 201 (395)
T ss_pred HHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccc--------------------------ccccccccccc
Confidence 888777655 6999887777332 332211100 00112223344
Q ss_pred HhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcC-CCCChhhHHHHHHHhhhhhhhcc
Q psy7965 150 SDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAG-STLDPSISAIIVGVVQCIVTGLS 215 (257)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
.++||+|..|. +.+++..+...+|....|+|.++.+.| +..+......+..+.+++.++..
T Consensus 202 ~~vw~~~~aW~-----vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~ 263 (395)
T COG2807 202 RKVWRSPLAWQ-----VTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLI 263 (395)
T ss_pred cccccCchhHH-----HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHH
Confidence 56888884444 223333333347889999999999998 33334444555555566666655
No 85
>PTZ00207 hypothetical protein; Provisional
Probab=99.33 E-value=4.4e-12 Score=107.44 Aligned_cols=99 Identities=16% Similarity=0.077 Sum_probs=86.6
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFA------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ 74 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~ 74 (257)
+++||+|||+++.++.+++.+++++++++ ++++.+++.|++.|+|.+...+.....+.+|+| ++||++.++..
T Consensus 83 ~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~ 161 (591)
T PTZ00207 83 FIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMK 161 (591)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHH
Confidence 36899999999999999999999999997 689999999999999999998988899999996 78999999999
Q ss_pred HHHHHhHHH-HHHhhhh---hHHHHHhhcC
Q psy7965 75 MFLTLGVLY-VYCLGLS---TYTVIAIGCL 100 (257)
Q Consensus 75 ~~~~~G~~~-~~~~~~~---~Wr~~~~~~~ 100 (257)
.+.++|..+ +++.... +|+..+++.+
T Consensus 162 ~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~ 191 (591)
T PTZ00207 162 TFTGLGSAILGSIQLAFFSDNTSAYFFFLM 191 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999975 4444444 7887776666
No 86
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.32 E-value=3.2e-12 Score=89.08 Aligned_cols=99 Identities=28% Similarity=0.382 Sum_probs=90.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|.+|+++|++..++.+....+|.
T Consensus 21 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 100 (141)
T TIGR00880 21 LTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGP 100 (141)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHH
Confidence 57999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++.+... +|++.+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~ 124 (141)
T TIGR00880 101 LLGPPLGGVLAQFLGWRAPFLFLA 124 (141)
T ss_pred HHhHHhHHHHhcccchHHHHHHHH
Confidence 999888776 7888776655
No 87
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.30 E-value=1.8e-11 Score=103.27 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=81.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++|.||||.+++.+.++..+|+++++-++|...++.+..+.|+|.|.... ....++|..|.|.|+...++......+..
T Consensus 101 LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~ 179 (599)
T PF06609_consen 101 LSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITT 179 (599)
T ss_pred HHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhh
Confidence 78999999999999999999999999999999999999999999877664 45568999999999988877665554444
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..++.++.. +|||.|++..
T Consensus 180 ~~~~~ia~~~~~~~~WRw~~~~~~ 203 (599)
T PF06609_consen 180 WISPLIAQLFAAHSGWRWIFYIFI 203 (599)
T ss_pred cccHHHHHHhccCCCcchHHHHHH
Confidence 444555433 8999998877
No 88
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.29 E-value=1.8e-11 Score=100.61 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=75.8
Q ss_pred ccccCchhHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccch--hhhhhHHHHHHHH
Q psy7965 3 ADKFGRKPVI-LAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR--GALGSFFQMFLTL 79 (257)
Q Consensus 3 ~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~ 79 (257)
+||+|||+.+ ..+.++.+++..+.+++++++.+++.+.+.|...+...+....+..|+.++++| +...++.+.+.++
T Consensus 75 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (393)
T PRK15011 75 SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSL 154 (393)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 7999999875 456666677888888899998887666555554556677888888888877655 3455788888889
Q ss_pred hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 80 GVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 80 G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
|.++++.++.. |||..|++.+
T Consensus 155 g~~~g~~i~~~l~~~~gw~~~f~~~~ 180 (393)
T PRK15011 155 AWVIGPPLAYALAMGFSFTVMYLSAA 180 (393)
T ss_pred HHHHhhHHHHHHHHhcChHHHHHHHH
Confidence 99999888865 9999987776
No 89
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.28 E-value=9.8e-12 Score=101.74 Aligned_cols=95 Identities=9% Similarity=-0.103 Sum_probs=72.4
Q ss_pred cccccCchhHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 2 FADKFGRKPVI----LAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 2 l~dr~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
++||+|||... ..+..+..+ .....+++++.+++.|.+.|.+.+...+...++..|+ +++|++..+......
T Consensus 62 l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~ 137 (382)
T TIGR00902 62 LIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIG 137 (382)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHH
Confidence 68999985443 222222222 2334678899999999999999888888888877664 578899999999999
Q ss_pred HHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 78 TLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 78 ~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
++|.++++.+++. |||..|.+..
T Consensus 138 slG~~~g~~l~g~l~~~~g~~~~f~~~~ 165 (382)
T TIGR00902 138 SAAFIIGSALFGGLIGMFDEQNILAILT 165 (382)
T ss_pred HHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 9999999988766 8999887654
No 90
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.28 E-value=1.4e-11 Score=100.93 Aligned_cols=95 Identities=9% Similarity=0.004 Sum_probs=70.8
Q ss_pred cccccCch----hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 2 FADKFGRK----PVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 2 l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
+.||+||| +.+.+...+. .......+++++.+++.|++.|++.+...+...++..++ +++|++..+......
T Consensus 62 l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~ 137 (382)
T PRK11128 62 RVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWG 137 (382)
T ss_pred HHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHH
Confidence 58999984 3333222222 222333457899999999999999988888887777776 466888888888888
Q ss_pred HHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 78 TLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 78 ~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
++|..++|.++.. +||..|++.+
T Consensus 138 ~lg~~igp~lgg~l~~~~g~~~~f~~~~ 165 (382)
T PRK11128 138 SIAFVIGSALTGKLVSWFGEQAILWILT 165 (382)
T ss_pred HHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 8999999888876 8999887665
No 91
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.24 E-value=6.9e-12 Score=105.92 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=81.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH-HHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLL---ILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF-FQMFL 77 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~ 77 (257)
++||+|||+.+..+.++..++.+. ...+++...+++++++.|++.+........++.|.+|++.|+++.++ ++.+.
T Consensus 309 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~ 388 (490)
T PRK10642 309 LSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISV 388 (490)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHH
Confidence 689999999988877654443332 22244577788899999887777667777888899999999999997 55544
Q ss_pred HHhHHHHHHhhhh------hHHHHHhhcC---------------ChHHHHhc-----CChHHHHHHHHHHh
Q psy7965 78 TLGVLYVYCLGLS------TYTVIAIGCL---------------TPIFLMKS-----GKPEKAEVSLRYYR 122 (257)
Q Consensus 78 ~~G~~~~~~~~~~------~Wr~~~~~~~---------------~~~~l~~~-----~~~~~~~~~~~~~~ 122 (257)
..| .++|.+... +|+..+++.. +|.|+..+ ++++|+.+.+++++
T Consensus 389 ~~g-~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 389 LVA-GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 444 444444333 3554433222 55666644 77788888887776
No 92
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.24 E-value=7.9e-11 Score=93.25 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=83.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLIL---FAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
+.+|+|+|+.++.++.+.++++.+.. ...++..++++-++.|.|.+...+....++....|+++....+++.|..++
T Consensus 71 ~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~ 150 (422)
T COG0738 71 LIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNG 150 (422)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhh
Confidence 57999999999999999999999885 567899999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhhh
Q psy7965 79 LGVLYVYCLGLS 90 (257)
Q Consensus 79 ~G~~~~~~~~~~ 90 (257)
+|.+++|+++..
T Consensus 151 lGa~~gp~~g~~ 162 (422)
T COG0738 151 LGAILGPLLGSS 162 (422)
T ss_pred hHHHHHHHHHHH
Confidence 999999999876
No 93
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.24 E-value=1.2e-11 Score=103.93 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=91.3
Q ss_pred Ccccc-cCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccc---hhhhhhHHHHH
Q psy7965 1 PFADK-FGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI---RGALGSFFQMF 76 (257)
Q Consensus 1 ~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~ 76 (257)
+++|| +|||+++.++.++.+++.++.+++++.+.+.++|++.|++.|...+...++++|++|+++ |+.+.++++.+
T Consensus 70 ~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~ 149 (475)
T TIGR00924 70 WFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMS 149 (475)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHH
Confidence 36899 899999999999999999999998888899999999999999999999999999998764 88899999999
Q ss_pred HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 77 LTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++|.++++.+++. +||+.|.+.+
T Consensus 150 ~niG~~ig~~l~g~l~~~~g~~~~f~~~~ 178 (475)
T TIGR00924 150 INIGSFISPLLAGVIAENYGYHVGFNLAA 178 (475)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 99999999988876 8999987765
No 94
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.22 E-value=1.2e-10 Score=95.87 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=67.0
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHH---Hh-----hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLIL---FA-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
+++||+|||+.++.+....+++..... +. +....+++.+++.|++.+...+....+..|..+ +++...+.
T Consensus 60 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~ 137 (396)
T TIGR00882 60 LISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGK 137 (396)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccch
Confidence 368999999999887666655443221 11 223456677888999888888887777666533 33445566
Q ss_pred HHHHHHHhHHHHHHhhhh----hHHHHHhhcC
Q psy7965 73 FQMFLTLGVLYVYCLGLS----TYTVIAIGCL 100 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~~~----~Wr~~~~~~~ 100 (257)
.....++|..+++.+++. +||..|++.+
T Consensus 138 ~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~ 169 (396)
T TIGR00882 138 ARMFGCVGWALCASIAGILFSIDPQIVFWLGS 169 (396)
T ss_pred hhhhcccHHHHHHHHHhhhhccCchHHHHHHH
Confidence 666667777777777665 8999887766
No 95
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.17 E-value=6.9e-10 Score=93.67 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=83.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
++||+.||++++.+-++.++..+...+. .+.+.+++.-++.|++.+...|...+++.|..|+++...+.++.+..
T Consensus 68 laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~ 147 (524)
T PF05977_consen 68 LADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSIS 147 (524)
T ss_pred HhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence 6899999999999888877665554442 36788999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 77 LTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++..++||.+++. |-.+.|.+.+
T Consensus 148 ~niar~iGPalgG~Lva~~G~~~~f~ina 176 (524)
T PF05977_consen 148 FNIARIIGPALGGILVAFFGAAAAFLINA 176 (524)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877 5455555544
No 96
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.13 E-value=5.9e-11 Score=103.53 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=83.6
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+++||+|||++++++.++.++++++.++.++...+++.+++.|++.++.++...++++|++|+++|++++++.+....+|
T Consensus 617 ~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlG 696 (742)
T TIGR01299 617 LLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAA 696 (742)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999998888888888999999888889999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q psy7965 81 VLYVYCLGLS 90 (257)
Q Consensus 81 ~~~~~~~~~~ 90 (257)
.+++|.+++.
T Consensus 697 aiigp~i~g~ 706 (742)
T TIGR01299 697 AVLGILIFGS 706 (742)
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 97
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.10 E-value=1.7e-10 Score=97.57 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=86.4
Q ss_pred Ccccc-cCchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccccccccceeeeccCCccc--hhhhhhHHHHH
Q psy7965 1 PFADK-FGRKPVILAFCFPYILSWLLILFAQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI--RGALGSFFQMF 76 (257)
Q Consensus 1 ~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~ 76 (257)
+++|| +|||+++..+.++.+++..++++++ +.+.+.++|.+.|++.|...+....++.|++|+++ |..+.++++.+
T Consensus 79 ~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~ 158 (500)
T PRK09584 79 WLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMS 158 (500)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHH
Confidence 47899 5999999999999999999988874 56677888999999999999998899999998654 45678888999
Q ss_pred HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 77 LTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++|..++|.+++. |||+.|.+.+
T Consensus 159 ~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 159 INIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999988876 8999998766
No 98
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.09 E-value=6.4e-10 Score=92.25 Aligned_cols=99 Identities=16% Similarity=0.044 Sum_probs=56.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHH---HhhhHH-HHHHHHHHHhhhccccccccceeeeccCC--ccchhhhhhHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLIL---FAQNIY-MLFVARFIAGVGTGGLCAIIPMFIGEIAE--SSIRGALGSFFQM 75 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~-~~~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~~~~~~ 75 (257)
++||+|||++++++..+..++..... .++... ....+.++.++..+.........+.++.+ .++|+...+..+.
T Consensus 69 l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 148 (420)
T PRK09528 69 ISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARM 148 (420)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHH
Confidence 68999999999887666655443221 111111 11122223333333333332223334333 3456777777777
Q ss_pred HHHHhHHHHHHhhhh----hHHHHHhhcC
Q psy7965 76 FLTLGVLYVYCLGLS----TYTVIAIGCL 100 (257)
Q Consensus 76 ~~~~G~~~~~~~~~~----~Wr~~~~~~~ 100 (257)
..++|..+++.+++. +|++.|++.+
T Consensus 149 ~~~~g~~i~~~~~g~l~~~~~~~~f~~~~ 177 (420)
T PRK09528 149 WGSLGWALCAFIAGILFNINPQINFWLGS 177 (420)
T ss_pred hhhHHHHHHHHHHHHHHhcCchHhHHHHH
Confidence 778888888777765 8998887765
No 99
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.07 E-value=2.7e-10 Score=94.70 Aligned_cols=90 Identities=23% Similarity=0.410 Sum_probs=68.8
Q ss_pred Cccc----ccCchhHHHHH-HHHHHHHHHHHHHhhhHH-----------------HHHHHHHHHhhhccccccccceeee
Q psy7965 1 PFAD----KFGRKPVILAF-CFPYILSWLLILFAQNIY-----------------MLFVARFIAGVGTGGLCAIIPMFIG 58 (257)
Q Consensus 1 ~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~r~l~G~~~g~~~~~~~~~i~ 58 (257)
+++| |+|||+.++.. .+...++..+.+++++.. .+.++-.+..++.+...+...++++
T Consensus 61 ~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALia 140 (477)
T TIGR01301 61 YLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLA 140 (477)
T ss_pred ehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4689 59999998874 666666667777766542 2333334455677878888899999
Q ss_pred ccCCccch--hhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 59 EIAESSIR--GALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 59 e~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
|.+|+++| +.+.++.+...++|.++++.+++.
T Consensus 141 Dl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~ 174 (477)
T TIGR01301 141 DLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY 174 (477)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999865 578999999999999999988876
No 100
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.05 E-value=2.6e-11 Score=102.49 Aligned_cols=208 Identities=14% Similarity=0.169 Sum_probs=3.0
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhh--------------------------------------------------
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ-------------------------------------------------- 30 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------------------------------------- 30 (257)
++.+|..|-+.+-.+.+++++|++++++-+
T Consensus 60 y~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (539)
T PF03137_consen 60 YFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSG 139 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchH
Confidence 346676777788889999999998877610
Q ss_pred hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh--------------------
Q psy7965 31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS-------------------- 90 (257)
Q Consensus 31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-------------------- 90 (257)
-+..++++.++.|+|....++...+|+-|..++++-+.++++.++...+|.++|.++++.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p 219 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITP 219 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCC
Confidence 024688999999999999999999999999999999999999999999999988888754
Q ss_pred -------hHHHHHhhcC-------ChHHHHhcCChHHHHHH-HHHHhCCccchHHHHHHHHHHH------HHhhhhhhhH
Q psy7965 91 -------TYTVIAIGCL-------TPIFLMKSGKPEKAEVS-LRYYRGAQYDVATELAAIQKEI------DAASEKKATF 149 (257)
Q Consensus 91 -------~Wr~~~~~~~-------~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 149 (257)
.|..-|.+.+ .|.+.+.++-+++.... .++..+++.+ +.+.++.+++. +.-++-....
T Consensus 220 ~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~df~~~l 298 (539)
T PF03137_consen 220 SDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEE-DSDKDSFKDPKSKKSFGKSIKDFPKAL 298 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchh-hhhhhcccccccccchhhhhhhHHHHH
Confidence 2444444444 44444444333331100 0000000000 00000000000 0111222344
Q ss_pred HhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhcc
Q psy7965 150 SDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS 215 (257)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
+.+++|| +.+...+...........+.+|+|.|++.+ .+.++..++.+.++..+++..++
T Consensus 299 ~~Ll~Np-----~f~~~~la~~~~~~~~~G~~tF~pKylE~Q-F~~sas~A~~l~G~v~ip~~~~G 358 (539)
T PF03137_consen 299 KRLLTNP-----VFMCLILAGVFESFIVSGFATFLPKYLESQ-FGLSASQASLLTGIVSIPGAALG 358 (539)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHhcCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHhhhhcchhhee
Confidence 5556665 444455555555556778999999999886 56677788888888877766666
No 101
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.01 E-value=5.6e-10 Score=91.92 Aligned_cols=99 Identities=19% Similarity=0.230 Sum_probs=85.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|..|+++|+++.++++....+|.
T Consensus 272 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 351 (399)
T PRK05122 272 LINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSL 351 (399)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999888888888888888888888999999999998888877888899999999999999999888888
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++.+.+. +|+..+.+.+
T Consensus 352 ~~~~~~~g~l~~~~g~~~~~~~~~ 375 (399)
T PRK05122 352 GITGPLAGLVASWFGYPSIFLAAA 375 (399)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHH
Confidence 777666555 7888877665
No 102
>KOG3626|consensus
Probab=99.00 E-value=2.4e-09 Score=91.65 Aligned_cols=206 Identities=12% Similarity=0.146 Sum_probs=136.2
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHh--------------------h--------------------------------
Q psy7965 3 ADKFGRKPVILAFCFPYILSWLLILFA--------------------Q-------------------------------- 30 (257)
Q Consensus 3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------~-------------------------------- 30 (257)
+-|.-|-+.+-++.++++++++++++- +
T Consensus 156 G~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (735)
T KOG3626|consen 156 GSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSY 235 (735)
T ss_pred ccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCch
Confidence 445666667777888888888887761 0
Q ss_pred hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh--------------------
Q psy7965 31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS-------------------- 90 (257)
Q Consensus 31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-------------------- 90 (257)
-+..++++.++.|+|....++...+|+-|...+++-...+++..+...+|.++|.+++++
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DP 315 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDP 315 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCc
Confidence 023678889999999999999999999999999999999999999999999999888765
Q ss_pred ----hHHHHHhhcC-------ChHHHHhcCChHHHHH-HHHHHhCCccchHHHHHHHHHHHHHhhhhhhhHHhhhcCCch
Q psy7965 91 ----TYTVIAIGCL-------TPIFLMKSGKPEKAEV-SLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRAN 158 (257)
Q Consensus 91 ----~Wr~~~~~~~-------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
.|..-|++.+ .|.+.+.++.+++..+ ..++.+..+++.+ ..++..+..++-++-..+.+.+++||
T Consensus 316 rWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~ikdfp~s~~~ll~N~-- 392 (735)
T KOG3626|consen 316 RWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESG-GAKSDKTFGKKIKDFPKSIKRLLSNP-- 392 (735)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccc-cccCCcchhhhHHHHHHHHHHHhcCc--
Confidence 3555566555 5555555555443221 0111111100000 00000000111123445677888887
Q ss_pred hHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhcc
Q psy7965 159 LRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS 215 (257)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (257)
+.+...+.............+|+|.|++++ .+.+++.++.+.+...+++..++
T Consensus 393 ---if~~~~l~~~~~~~~~~G~~tFlPKyLE~Q-fg~sas~An~l~G~i~vp~~~~G 445 (735)
T KOG3626|consen 393 ---IFMLVVLASVIESLAITGYITFLPKYLETQ-FGISASLANILTGSIGVPAAAVG 445 (735)
T ss_pred ---hHHHHHHHHHHHHHHHhhHHHhhHHHHHHH-cCCCHHHHHHHhhhhhhhhhhhh
Confidence 333344444444445778899999999887 56788888888888888777776
No 103
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.00 E-value=1.7e-09 Score=90.10 Aligned_cols=100 Identities=17% Similarity=0.245 Sum_probs=74.6
Q ss_pred Ccccc----cCchh-HHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccccceeeeccC-Cccchhh
Q psy7965 1 PFADK----FGRKP-VILAFCFPYILSWLLILFAQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIA-ESSIRGA 68 (257)
Q Consensus 1 ~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~ 68 (257)
+++|| +|||| .++.+....+++.+++...++ ...+++.+++.+++.+...+...++..|.. ++++|++
T Consensus 57 ~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~ 136 (437)
T TIGR00792 57 NIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERES 136 (437)
T ss_pred EeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHH
Confidence 36887 78844 677788888888887776553 456777888888888887777788889987 5789999
Q ss_pred hhhHHHHHHHHhHHHHHHhhh------------hhHHHHHhhcC
Q psy7965 69 LGSFFQMFLTLGVLYVYCLGL------------STYTVIAIGCL 100 (257)
Q Consensus 69 ~~~~~~~~~~~G~~~~~~~~~------------~~Wr~~~~~~~ 100 (257)
..++.+.+..+|.++++.+.. .+||+.+.+.+
T Consensus 137 ~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~ 180 (437)
T TIGR00792 137 LSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA 180 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence 999988888777655433321 17998877666
No 104
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.99 E-value=7.7e-10 Score=92.36 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=81.0
Q ss_pred Cccccc-CchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccccccccceeeeccCCcc--chhhhhhHHHHH
Q psy7965 1 PFADKF-GRKPVILAFCFPYILSWLLILFAQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS--IRGALGSFFQMF 76 (257)
Q Consensus 1 ~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~ 76 (257)
+++||+ |||+++.++.++..++.++.+..+ +...+.++..+.++|.|...+...++++|.+|++ +|..+.++.+.+
T Consensus 67 ~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~ 146 (493)
T PRK15462 67 FLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAA 146 (493)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHH
Confidence 478999 999999999999999987776543 2233444555566677777777788999999986 799999999999
Q ss_pred HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 77 LTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++|..++|.+.++ ||++.|.+.+
T Consensus 147 ~nlG~~iap~l~g~L~~~~Gw~~~F~iaa 175 (493)
T PRK15462 147 GNVGSIIAPIACGYAQEEYSWAMGFGLAA 175 (493)
T ss_pred HHHHHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 99999999999877 8999988765
No 105
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.89 E-value=1.2e-09 Score=90.52 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=83.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH-HH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQ----NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ-MF 76 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~ 76 (257)
++||+|||+++..+.++.+++..+..... +.+.+++.+++.|++.+...+....++.|++|+++|++++++.+ ..
T Consensus 274 l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~ 353 (418)
T TIGR00889 274 FLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMC 353 (418)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 68999999999999999988877666632 24667788999999999888888899999999999999999997 67
Q ss_pred HHHhHHHHHHhhhh-----------hHHHHHhhcC
Q psy7965 77 LTLGVLYVYCLGLS-----------TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~G~~~~~~~~~~-----------~Wr~~~~~~~ 100 (257)
+++|.+++|.+++. +|+..|.+.+
T Consensus 354 ~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 354 NGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 88899999888875 2888877665
No 106
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.87 E-value=2.3e-09 Score=88.43 Aligned_cols=99 Identities=18% Similarity=0.302 Sum_probs=88.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+.....+.|..|+++||+..++.+....+|.
T Consensus 281 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 360 (408)
T PRK09874 281 LGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGN 360 (408)
T ss_pred HHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHH
Confidence 68999999999999888888887777778888889999999999999999888888999999999999999999999999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++|.+++. +|+..|++.+
T Consensus 361 ~~gp~~~G~l~~~~g~~~~f~~~~ 384 (408)
T PRK09874 361 VTGPLMGAAISANYGFRAVFLVTA 384 (408)
T ss_pred HhhHHHHHHHHhhcchhHHHHHHH
Confidence 999988876 7888887776
No 107
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.86 E-value=2.8e-09 Score=88.45 Aligned_cols=100 Identities=12% Similarity=0.060 Sum_probs=85.4
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH-HHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF-FQMFLTL 79 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~ 79 (257)
++.||+|||+.+..+.++.+++..+.+++++.+.+...+++.|++.+...+....++.|.+|++.|+...+. ++....+
T Consensus 284 ~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l 363 (420)
T PRK09528 284 FIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQL 363 (420)
T ss_pred HHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHH
Confidence 368999999999999999999888888888999999999999999888878888899999999999887665 5677778
Q ss_pred hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 80 GVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 80 G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
|.++++.+.+. |||..|.+.+
T Consensus 364 g~~ig~~~~G~l~~~~G~~~~f~~~~ 389 (420)
T PRK09528 364 GAVFLSTLAGNLYDSIGFQGTYLILG 389 (420)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHH
Confidence 88888877766 8888887655
No 108
>PRK12382 putative transporter; Provisional
Probab=98.86 E-value=2.3e-09 Score=88.12 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=88.1
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.||+|||+.+..+..+..++.++..+.++.+.+.++.++.|++.+...+.....+.|.+|+++|+++.++.+....+|.
T Consensus 272 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 351 (392)
T PRK12382 272 MPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY 351 (392)
T ss_pred HHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999888888888888888888899999999998888888888999999999999999999999999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++.+.+. +|+..+.+.+
T Consensus 352 ~ig~~~~g~l~~~~g~~~~~~~~~ 375 (392)
T PRK12382 352 GVSGPLAGMLATSFGYPSVFLAGA 375 (392)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHH
Confidence 998888776 7888887765
No 109
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.85 E-value=3.9e-09 Score=85.86 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=83.7
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNI--YMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
++.||+|||+.+.++.++..++.++..+.++. ..++...++.|++.|...+..+.++.|.+|+++|+++.++.+....
T Consensus 262 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 341 (377)
T TIGR00890 262 ALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKA 341 (377)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 36899999999999999988888877776543 3355667888888888888888899999999999999999999999
Q ss_pred HhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 79 LGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 79 ~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
+|..+++.+.+. ||++.+.+.+
T Consensus 342 ~g~~~~~~~~g~l~~~~g~~~~f~~~~ 368 (377)
T TIGR00890 342 VAGIFGGLIASHALTEIGFEYTFIVTG 368 (377)
T ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHH
Confidence 999999988766 7888876654
No 110
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.83 E-value=3.4e-08 Score=81.15 Aligned_cols=99 Identities=6% Similarity=-0.153 Sum_probs=68.6
Q ss_pred cccccCchhHHHHHHHHHHH-HHHHHH-H--hhh-HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYIL-SWLLIL-F--AQN-IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~-~~~~~~-~--~~~-~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
..||+||||..++...+... ...... + ..+ ...++..-...++..+...+....+..|..++++++...+....+
T Consensus 62 ~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g 141 (390)
T TIGR02718 62 WSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAG 141 (390)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHH
Confidence 57899999997665533222 222222 1 222 334444555666777777788888888999989889888888888
Q ss_pred HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 77 LTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+|.++++..... +||..|++.+
T Consensus 142 ~~lG~~~g~~~~~~l~~~~gw~~~f~~~a 170 (390)
T TIGR02718 142 VMIGFFGGGAGTLVLFGKFGQRPAFLLVA 170 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 88888888854433 9999988877
No 111
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.82 E-value=4.7e-09 Score=84.47 Aligned_cols=99 Identities=24% Similarity=0.333 Sum_probs=91.0
Q ss_pred cccccCchh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 2 FADKFGRKP-VILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+.||+|||+ .+..+..+..++.+.....++.+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (352)
T cd06174 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLG 313 (352)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 579999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+++.+.+. +|+..+.+.+
T Consensus 314 ~~i~~~i~g~l~~~~~~~~~~~~~~ 338 (352)
T cd06174 314 GALGPLLAGLLLDTGGYGGVFLILA 338 (352)
T ss_pred HHHHHHHHHHHhcccCcchHHHHHH
Confidence 9999888876 7887776655
No 112
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.76 E-value=4.4e-08 Score=81.53 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=73.1
Q ss_pred ccc----ccCchhHHH-HHHHHHHHHHHHHHHh-h-------hHHHHHHHHHHHhhhccccccccceeeeccCC-ccchh
Q psy7965 2 FAD----KFGRKPVIL-AFCFPYILSWLLILFA-Q-------NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-SSIRG 67 (257)
Q Consensus 2 l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~-~-------~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~ 67 (257)
++| |+||||-.+ ++.+..+++..+.... + ....+.+.-++..++.......-.++..|.++ +++|.
T Consensus 60 ~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~ 139 (428)
T PF13347_consen 60 LSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERT 139 (428)
T ss_pred EEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhh
Confidence 678 899777555 5778888877777665 4 12335666677788889888888999999998 57899
Q ss_pred hhhhHHHHHHHHhHHHHHHhhhh------------hHHHHHhhcC
Q psy7965 68 ALGSFFQMFLTLGVLYVYCLGLS------------TYTVIAIGCL 100 (257)
Q Consensus 68 ~~~~~~~~~~~~G~~~~~~~~~~------------~Wr~~~~~~~ 100 (257)
+..+.-+.+..+|.++...+... +|++...+.+
T Consensus 140 ~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~ 184 (428)
T PF13347_consen 140 RLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA 184 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence 99999888888887644444322 4887776665
No 113
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.72 E-value=6.9e-09 Score=86.96 Aligned_cols=99 Identities=15% Similarity=0.051 Sum_probs=79.3
Q ss_pred cccc--cCchhHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 2 FADK--FGRKPVILA--FCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 2 l~dr--~Grr~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
++|| +++|+...+ +.++.+++.++....++++.+++.+++.|++.+...+....++.|.+|++++++..++++...
T Consensus 299 l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 378 (455)
T TIGR00892 299 IAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVE 378 (455)
T ss_pred HhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHH
Confidence 4676 344443333 334444555566677888999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhhh------hHHHHHhhcC
Q psy7965 78 TLGVLYVYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 78 ~~G~~~~~~~~~~------~Wr~~~~~~~ 100 (257)
.+|.+++|.+++. +|+..|++.+
T Consensus 379 ~lg~~igp~i~G~l~~~~g~~~~~f~~~~ 407 (455)
T TIGR00892 379 CCAVLIGPPLAGRLVDATKNYKYIFYASG 407 (455)
T ss_pred HHHHHccccceeeeehhcCCcchHHHHhh
Confidence 9999999988876 5888887776
No 114
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.70 E-value=3.4e-08 Score=81.28 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=78.1
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||+.+..+.+...+........++.+.+++.+++.+++.|...+....+..|..|+ +|++++++.+....+|.
T Consensus 275 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~ 353 (393)
T PRK15011 275 FAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGW 353 (393)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHH
Confidence 68999999988877766665555555567788888899888888777767777778899875 58999999988888998
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++.+++. +|+..+.+..
T Consensus 354 ~~g~~l~G~i~~~~g~~~~~~~~~ 377 (393)
T PRK15011 354 IIAGSLAGIVAEIWNYHAVFWFAL 377 (393)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 888888777 7888876654
No 115
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.69 E-value=1.4e-07 Score=78.27 Aligned_cols=93 Identities=11% Similarity=0.002 Sum_probs=61.2
Q ss_pred cccccCc-hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceee----e----ccCCccchhhhhhH
Q psy7965 2 FADKFGR-KPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFI----G----EIAESSIRGALGSF 72 (257)
Q Consensus 2 l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i----~----e~~~~~~r~~~~~~ 72 (257)
++||+|| |+++.++.++..++..+..+.++++.+++.|.+.|++.+...+...+.. . |......|.+..+.
T Consensus 61 l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~ 140 (418)
T TIGR00889 61 IADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT 140 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh
Confidence 6899965 7788888888888888888889999999999999998776665544432 1 32333344555542
Q ss_pred HHHHHHHhHHHHHHhhhh-hHHHHH
Q psy7965 73 FQMFLTLGVLYVYCLGLS-TYTVIA 96 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~~~-~Wr~~~ 96 (257)
.++.+|..++..++.. .|+..+
T Consensus 141 --lG~~ig~~l~g~l~~~~~~~~f~ 163 (418)
T TIGR00889 141 --IGFIAAMWAVSLLDIELSNIQLY 163 (418)
T ss_pred --HHHHHHHHHHHHhcccchhHHHH
Confidence 3445555544444222 466444
No 116
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.64 E-value=4.2e-08 Score=79.96 Aligned_cols=98 Identities=12% Similarity=0.251 Sum_probs=80.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.||+|||+.+.++.++..+..+.....++.+.+.+.+.+.|++.|...+....++.|..|+ +|+++.++.+....+|.
T Consensus 258 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 336 (375)
T TIGR00899 258 LIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGW 336 (375)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHH
Confidence 67999999999888777666666666677888888899999999888888888888998875 56799999998888999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++.+.+. +|+..+.+.+
T Consensus 337 ~~g~~~~g~~~~~~g~~~~~~~~~ 360 (375)
T TIGR00899 337 IIAGSVGGILAERWSYHAVYWFAI 360 (375)
T ss_pred HHHHHHHHHHHHhccchhHHHHHH
Confidence 998888766 7888776655
No 117
>PRK09669 putative symporter YagG; Provisional
Probab=98.63 E-value=1.1e-07 Score=79.55 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=66.4
Q ss_pred cccc----cCch-hHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccccceeeeccC-Cccchhhh
Q psy7965 2 FADK----FGRK-PVILAFCFPYILSWLLILFAQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIA-ESSIRGAL 69 (257)
Q Consensus 2 l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~ 69 (257)
++|| +||| +.++.+.+..++...+....++ ...+++..++.+.+.......-.++.+|++ ++++|.+.
T Consensus 68 lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l 147 (444)
T PRK09669 68 LVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSL 147 (444)
T ss_pred eeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHH
Confidence 6787 7884 5566677777777765555443 345555666666666666777778999998 56889988
Q ss_pred hhHHHHHHHHhHHHHHHhhhh------------hHHHHHhhcC
Q psy7965 70 GSFFQMFLTLGVLYVYCLGLS------------TYTVIAIGCL 100 (257)
Q Consensus 70 ~~~~~~~~~~G~~~~~~~~~~------------~Wr~~~~~~~ 100 (257)
.++...+..+|..+++.+... +|+..+.+.+
T Consensus 148 ~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ 190 (444)
T PRK09669 148 QSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG 190 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 888777777776665443211 6777666555
No 118
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.57 E-value=1.5e-07 Score=74.81 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=59.0
Q ss_pred HhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhh
Q psy7965 28 FAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGL 89 (257)
Q Consensus 28 ~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 89 (257)
...++..++++-++.|.|.+...+..+.++++..|+|++++.+++.+..+++|.+++|+++.
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~ 67 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGG 67 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999987
No 119
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.57 E-value=7.6e-08 Score=79.49 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=77.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||+.+..+.+...++.+.....++.+.+.+..++.|++.+...+....++.|.+|+++|++..++.+....+|.
T Consensus 278 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 357 (406)
T PRK11551 278 LMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGS 357 (406)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHH
Confidence 68999999999988777777777777777777777888888988888888888999999999999999999999999999
Q ss_pred HHHHHhhhh
Q psy7965 82 LYVYCLGLS 90 (257)
Q Consensus 82 ~~~~~~~~~ 90 (257)
.++|.+.+.
T Consensus 358 ~~g~~~~g~ 366 (406)
T PRK11551 358 MAGPLLAGQ 366 (406)
T ss_pred HHHhhhHhh
Confidence 999988776
No 120
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.55 E-value=1.4e-07 Score=77.60 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=75.5
Q ss_pred CcccccCchhHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWL-LILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL 79 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 79 (257)
+++||+|||+.+..+.++..+..+ .....++.+.+.+..++.|+..+...+....++.|.+|+++|++++++.+....+
T Consensus 296 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 375 (405)
T TIGR00891 296 FLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNL 375 (405)
T ss_pred HHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHH
Confidence 368999999999888776543333 3333456667777777778777777788888999999999999999999999999
Q ss_pred hHHHHHHhhhh-----h-HHHHHhh
Q psy7965 80 GVLYVYCLGLS-----T-YTVIAIG 98 (257)
Q Consensus 80 G~~~~~~~~~~-----~-Wr~~~~~ 98 (257)
|..++|.+.+. | |+..+..
T Consensus 376 g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 376 GGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHhccccchhHHh
Confidence 99999988776 4 6555443
No 121
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.53 E-value=1.2e-07 Score=76.78 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=79.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQN-IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+.||+|||+.+..+..+.+++.....+.++ .+.+.+..++.|++.+...+....++.|..|+++|++..++.+....+|
T Consensus 270 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 349 (365)
T TIGR00900 270 LGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAA 349 (365)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999888888888888777774 8888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q psy7965 81 VLYVYCLGLS 90 (257)
Q Consensus 81 ~~~~~~~~~~ 90 (257)
..+++.+.+.
T Consensus 350 ~~~g~~~~g~ 359 (365)
T TIGR00900 350 WPLGLILAGP 359 (365)
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 122
>TIGR00898 2A0119 cation transport protein.
Probab=98.52 E-value=1.1e-07 Score=80.82 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=75.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNI--YMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL 79 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 79 (257)
+.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++....+.+|.+|++.|+.++++.+....+
T Consensus 378 l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i 457 (505)
T TIGR00898 378 LIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARV 457 (505)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHH
Confidence 5799999999999999999888887776543 45555666777777777888889999999999999999999999999
Q ss_pred hHHHHHHhhhh
Q psy7965 80 GVLYVYCLGLS 90 (257)
Q Consensus 80 G~~~~~~~~~~ 90 (257)
|.+++|.+...
T Consensus 458 g~~i~p~i~~~ 468 (505)
T TIGR00898 458 GSIISPFLVYL 468 (505)
T ss_pred HHHHHhHHHHH
Confidence 99999988765
No 123
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.50 E-value=1.9e-07 Score=76.46 Aligned_cols=97 Identities=23% Similarity=0.199 Sum_probs=76.9
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
++.||+|||+++..+..+..++.+... + ........++.|++.+...|.....+.|..|+++++...+..+...++|
T Consensus 257 ~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG 333 (381)
T PRK03633 257 RLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVG 333 (381)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999988888777665443 2 2334456777888777778888888999999988888888888888999
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++|.+++. +|++.|.+.+
T Consensus 334 ~~igp~~~G~l~~~~g~~~~f~~~~ 358 (381)
T PRK03633 334 SLLGPSFTAMLMQNYSDNLLFIMIA 358 (381)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHH
Confidence 9999988877 7887777665
No 124
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.50 E-value=4.2e-08 Score=83.20 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=71.6
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFA--QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
+++||+|||+++..+.++..++.+..... .+.+.+....++.++...+..+....++.|.+|+++|++.+++.+....
T Consensus 333 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 412 (496)
T PRK03893 333 FLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGA 412 (496)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhh
Confidence 36899999999998877766665544432 3344444455554443334456667789999999999999999998889
Q ss_pred HhHHHHHHhhhh-----hHHHHHhhc
Q psy7965 79 LGVLYVYCLGLS-----TYTVIAIGC 99 (257)
Q Consensus 79 ~G~~~~~~~~~~-----~Wr~~~~~~ 99 (257)
+|..++|.+.+. +|+..+...
T Consensus 413 ~g~~lgp~l~g~l~~~~g~~~~~~~~ 438 (496)
T PRK03893 413 LGGALAPILGALIAQRLDLGTALASL 438 (496)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHH
Confidence 999999988776 677665443
No 125
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.49 E-value=1.3e-07 Score=78.37 Aligned_cols=99 Identities=10% Similarity=-0.046 Sum_probs=82.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.||.++++.+..+.++.+++.++..+.++.+...++.++.|++.+...+...+++.|..|++.||++.+++.....+|.
T Consensus 282 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 361 (417)
T PRK10489 282 LAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGD 361 (417)
T ss_pred hhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhH
Confidence 57888888888888888888888888888888888889999998888777778899999999999999999998888888
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++.+.+. +.+..+...+
T Consensus 362 ~~g~~l~G~l~~~~g~~~~~~~~~ 385 (417)
T PRK10489 362 AIGAALLGGLGAMMTPVASASASG 385 (417)
T ss_pred hHHHHHHHHHHHHhchhhHHHHHH
Confidence 888888776 5555554444
No 126
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.49 E-value=7.4e-07 Score=73.39 Aligned_cols=96 Identities=23% Similarity=0.277 Sum_probs=73.1
Q ss_pred ccCchhH-HHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccccceeeeccCC-ccchhhhhhHHHHH
Q psy7965 5 KFGRKPV-ILAFCFPYILSWLLILFAQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-SSIRGALGSFFQMF 76 (257)
Q Consensus 5 r~Grr~~-l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~ 76 (257)
|+||+|- ++++.+-.++.+.++-.+++ ....++.-++.+++.......-.++.+|+++ ++||.+..++-+.+
T Consensus 78 r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~ 157 (467)
T COG2211 78 RWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVF 157 (467)
T ss_pred ccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHH
Confidence 6787765 55677888888888887763 4455666788889999988888999999986 68999999999999
Q ss_pred HHHhHHHHHHhh-----hh-------hHHHHHhhcC
Q psy7965 77 LTLGVLYVYCLG-----LS-------TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~G~~~~~~~~-----~~-------~Wr~~~~~~~ 100 (257)
.++|.++...+. .. ||+....+.+
T Consensus 158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~ 193 (467)
T COG2211 158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLG 193 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence 999866554433 22 6777665555
No 127
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.48 E-value=2.3e-07 Score=78.37 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=62.1
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhh--hH--HHHHHHHHHHhhhccc-cccccceeeeccCCccchhhhhhHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQ--NI--YMLFVARFIAGVGTGG-LCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~--~~~~~~r~l~G~~~g~-~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
++||+|||+.++.+.++.+++.++..... +. .....+..+.+++.+. ..+....++.|.+|+++|++++++.+..
T Consensus 329 l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 408 (479)
T PRK10077 329 TVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 408 (479)
T ss_pred HHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHH
Confidence 67999999999999999988887765432 11 1222333444444443 2366788999999999999999999888
Q ss_pred HHHhHHHHHHh
Q psy7965 77 LTLGVLYVYCL 87 (257)
Q Consensus 77 ~~~G~~~~~~~ 87 (257)
..+|.++++.+
T Consensus 409 ~~~g~~~~~~~ 419 (479)
T PRK10077 409 QWIANYFVSWT 419 (479)
T ss_pred HHHHHHHHHHH
Confidence 88887776433
No 128
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.48 E-value=2.3e-07 Score=76.12 Aligned_cols=88 Identities=8% Similarity=0.081 Sum_probs=81.0
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH-HHHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ-MFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G 80 (257)
+.||+|+|+.+.++.++..+..+..++++|.+.++..+.+.|+..|...+....++.+. |+++|++.+++++ ....+|
T Consensus 263 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g 341 (382)
T TIGR00902 263 LFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGL 341 (382)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999998 9999999999976 567788
Q ss_pred HHHHHHhhhh
Q psy7965 81 VLYVYCLGLS 90 (257)
Q Consensus 81 ~~~~~~~~~~ 90 (257)
..+++.+++.
T Consensus 342 ~~~g~~~~G~ 351 (382)
T TIGR00902 342 IAIFTAFAGF 351 (382)
T ss_pred HHHHHHHHHH
Confidence 8888888877
No 129
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.47 E-value=8.9e-07 Score=74.52 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=68.3
Q ss_pred CcccccC-----chhHHHHHHHHHH-HHHHHHHHhhhHHHH-HHHHHHHhhhccccccccceeeeccCCccchhhhhhHH
Q psy7965 1 PFADKFG-----RKPVILAFCFPYI-LSWLLILFAQNIYML-FVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF 73 (257)
Q Consensus 1 ~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~ 73 (257)
+++||++ ||+.++++.++.. +.....+..++.... .+.+++.+++.+...+..-+++.|..+ |++....+..
T Consensus 82 ~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~ 160 (468)
T TIGR00788 82 VMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLV 160 (468)
T ss_pred HHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCee
Confidence 3689998 7777777776663 333333333454444 447899999999999999999999998 6555544333
Q ss_pred HHH---HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 74 QMF---LTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 74 ~~~---~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
... ..+|.++++.+++. +||..|++.+
T Consensus 161 s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a 195 (468)
T TIGR00788 161 SWMWGASATGGLISSLLGGPLLDKTLTRILFLITA 195 (468)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 333 33677777666655 8999988776
No 130
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.46 E-value=1.7e-07 Score=76.70 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=72.1
Q ss_pred cccccCchhHHHHHHHHHHHHH--HHHHH--hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH-HHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSW--LLILF--AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF-FQMF 76 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~ 76 (257)
++||+|||+.+.....+..+.. +.... .++.+.+.....+.|++.+...+....++.|.+|+++|+++.++ .+.+
T Consensus 278 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 357 (394)
T TIGR00883 278 LSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLA 357 (394)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhH
Confidence 6899999998876555444333 22222 24667777788889999988899999999999999999999997 4566
Q ss_pred HHHhHHHHHHhhhh-----h-HHHHHhh
Q psy7965 77 LTLGVLYVYCLGLS-----T-YTVIAIG 98 (257)
Q Consensus 77 ~~~G~~~~~~~~~~-----~-Wr~~~~~ 98 (257)
..+|..++|.+++. + |+...+.
T Consensus 358 ~~~g~~~~p~~~g~l~~~~g~~~~~~~~ 385 (394)
T TIGR00883 358 GAIFGGFAPYIAAALVAMTGDWYAIGYY 385 (394)
T ss_pred HHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence 67788788877765 4 7665443
No 131
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.44 E-value=6.4e-08 Score=79.17 Aligned_cols=100 Identities=19% Similarity=0.157 Sum_probs=89.5
Q ss_pred Cccccc-CchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhccccccccceeeeccCCccc--hhhhhhHHHH
Q psy7965 1 PFADKF-GRKPVILAFCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI--RGALGSFFQM 75 (257)
Q Consensus 1 ~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~ 75 (257)
|++||+ |+|+++..+.+++.+|.++.+.+. +...+.++-.+.++|.|..-+....++.|.+|+++ |-...+++.+
T Consensus 83 ~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~ 162 (498)
T COG3104 83 WLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYM 162 (498)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEE
Confidence 579998 999999999999999999999984 78899999999999999999999999999998754 6677778889
Q ss_pred HHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 76 FLTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 76 ~~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
+.++|++++|++..+ +|...|...+
T Consensus 163 ~iNiGsl~~p~i~~~~~~~~g~~~gF~~aa 192 (498)
T COG3104 163 GINIGSLIAPIITGLLAINYGWHVGFGLAA 192 (498)
T ss_pred EeehHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 999999999999887 8888887776
No 132
>KOG0253|consensus
Probab=98.44 E-value=3.5e-07 Score=72.24 Aligned_cols=83 Identities=14% Similarity=0.265 Sum_probs=69.5
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIY----MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
+.||+|||+.+..+.+++++..++...+.+-. .++.+|++ ..+.+.+.++|..|++|...|+...|.-....
T Consensus 404 iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPTavRatgvGtcSsma 479 (528)
T KOG0253|consen 404 IVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPTAVRATGVGTCSSMA 479 (528)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccchhhhhcchhhhhhHH
Confidence 57999999999999999999998887765433 34455544 44456788899999999999999999999999
Q ss_pred HHhHHHHHHhh
Q psy7965 78 TLGVLYVYCLG 88 (257)
Q Consensus 78 ~~G~~~~~~~~ 88 (257)
-+|.++.|+++
T Consensus 480 RIggI~~p~iA 490 (528)
T KOG0253|consen 480 RIGGIFSPVIA 490 (528)
T ss_pred hhhhhhhhHHH
Confidence 99999999887
No 133
>TIGR00895 2A0115 benzoate transport.
Probab=98.43 E-value=3.4e-07 Score=75.04 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=70.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.||+|||+.+....+......++....++...+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+|.
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 387 (398)
T TIGR00895 308 LADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGA 387 (398)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 68999999555444444433333333356777778888999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q psy7965 82 LYVYCLGL 89 (257)
Q Consensus 82 ~~~~~~~~ 89 (257)
.++|.+.+
T Consensus 388 ~~g~~~~G 395 (398)
T TIGR00895 388 IIGPILAG 395 (398)
T ss_pred HHHHHhHH
Confidence 99998765
No 134
>KOG2325|consensus
Probab=98.41 E-value=7.2e-07 Score=73.70 Aligned_cols=87 Identities=23% Similarity=0.345 Sum_probs=70.5
Q ss_pred ccccCc-hhHHHHHHHHHHHHHHHH-HH---hh-hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965 3 ADKFGR-KPVILAFCFPYILSWLLI-LF---AQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 3 ~dr~Gr-r~~l~~~~~~~~~~~~~~-~~---~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
..|.|. |+-++.+.++..+++++. .. .+ ..+.++++|++.|+|.|. ....-.|+++....++|.++++....+
T Consensus 95 s~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~ 173 (488)
T KOG2325|consen 95 SNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGG 173 (488)
T ss_pred ccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhH
Confidence 345554 777888999999999888 33 23 578999999999999876 566678999999999999999998888
Q ss_pred HHHhHHHHHHhhhh
Q psy7965 77 LTLGVLYVYCLGLS 90 (257)
Q Consensus 77 ~~~G~~~~~~~~~~ 90 (257)
..+|.++||.+...
T Consensus 174 ~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 174 FVLGIILGPTIQLA 187 (488)
T ss_pred HHHHHHHhHHHHHH
Confidence 88888888877654
No 135
>PRK03545 putative arabinose transporter; Provisional
Probab=98.40 E-value=8.3e-07 Score=72.99 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=73.8
Q ss_pred cccccCchhHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILSW-LLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
++||+|||.+.. +..+..++. .+....++.+.+.++.++.|++.+...+.....+.|..| ++|++++++++....+|
T Consensus 264 l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g 341 (390)
T PRK03545 264 LGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIG 341 (390)
T ss_pred HhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHH
Confidence 689999887544 444444443 334456777888888999999888777777778888876 68899999988888888
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+++.+++. ++|..+.+.+
T Consensus 342 ~~~G~~~~G~~~~~~g~~~~~~~~~ 366 (390)
T PRK03545 342 IGAGALLGNQVSLHLGLSSIGYVGA 366 (390)
T ss_pred HHHHHHHHHHHHhccChhHHHHHHH
Confidence 8888888776 8888887766
No 136
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.39 E-value=5.9e-07 Score=75.43 Aligned_cols=100 Identities=16% Similarity=0.044 Sum_probs=72.0
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHh-----h------hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFA-----Q------NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGAL 69 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~------~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~ 69 (257)
+++||+|||+.+.++.++..++.++..+. + +...+....++.+.......+....++.|.+|+++|+++
T Consensus 341 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 420 (481)
T TIGR00879 341 FLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG 420 (481)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHH
Confidence 36899999999999888888777766621 1 233333333333333333346667788999999999999
Q ss_pred hhHHHHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 70 GSFFQMFLTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 70 ~~~~~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
+++.+....+|.++++.+.+. +|++.|++.+
T Consensus 421 ~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~ 456 (481)
T TIGR00879 421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFG 456 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHH
Confidence 999999999999998887665 6777665544
No 137
>PRK09952 shikimate transporter; Provisional
Probab=98.38 E-value=6.4e-07 Score=74.84 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=70.3
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHH---h-hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHH-HH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILF---A-QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF-QM 75 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~-~~ 75 (257)
+++||+|||+++..+.++..++.+.... . ++...+++..++.|++.+...+..+++++|.+|++.|+...++. +.
T Consensus 308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~ 387 (438)
T PRK09952 308 WLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQV 387 (438)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHH
Confidence 3689999999998887766555433322 2 23444455667778888888888889999999999999888884 44
Q ss_pred HHHHhHHHHHHhhhh-------hHHHHHhhcC
Q psy7965 76 FLTLGVLYVYCLGLS-------TYTVIAIGCL 100 (257)
Q Consensus 76 ~~~~G~~~~~~~~~~-------~Wr~~~~~~~ 100 (257)
+..+|..++|.+... +|+..+....
T Consensus 388 ~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~ 419 (438)
T PRK09952 388 ASVVGGGFTPFIAAALVTYFGGSWHSVAIYLL 419 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 455777777766654 3666554433
No 138
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.38 E-value=3.3e-07 Score=77.33 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=59.0
Q ss_pred Cccc----ccCc-hhHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccccceeeeccC-Cccchhh
Q psy7965 1 PFAD----KFGR-KPVILAFCFPYILSWLLILFAQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIA-ESSIRGA 68 (257)
Q Consensus 1 ~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~ 68 (257)
+++| |+|| |+.++++.+..+++..+....++ +..+++..++.+++.......-.++..|.. ++++|.+
T Consensus 64 ~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~ 143 (473)
T PRK10429 64 WIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQ 143 (473)
T ss_pred eehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHH
Confidence 3688 6799 56666788777777655544321 334555566677777777888888999998 5899999
Q ss_pred hhhHHHHHHHHhHHHH
Q psy7965 69 LGSFFQMFLTLGVLYV 84 (257)
Q Consensus 69 ~~~~~~~~~~~G~~~~ 84 (257)
..++-..+.++|.++.
T Consensus 144 l~~~~~~~~~ig~~~~ 159 (473)
T PRK10429 144 LVPYPRFFASLAGFVT 159 (473)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888666666654443
No 139
>KOG2563|consensus
Probab=98.37 E-value=3.6e-06 Score=68.24 Aligned_cols=90 Identities=16% Similarity=0.036 Sum_probs=75.4
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhh------hHH--HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ------NIY--MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~------~~~--~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
|+.||+|-|..++++..+..+|..+-..+. .++ ....+..+.+.++-.......-+-.-|+|+++|..+..+
T Consensus 101 w~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~ 180 (480)
T KOG2563|consen 101 WILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVL 180 (480)
T ss_pred HhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhH
Confidence 678999999999999999999999887742 234 677888888888887777767778889999999999999
Q ss_pred HHHHHHHhHHHHHHhhhh
Q psy7965 73 FQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~~~ 90 (257)
-..+..+|..++.++...
T Consensus 181 ~v~~n~LGvavg~llppi 198 (480)
T KOG2563|consen 181 GVMGNPLGVAVGFLLPPI 198 (480)
T ss_pred HHhcchHHHHHHhhccce
Confidence 888888888888777654
No 140
>KOG4686|consensus
Probab=98.35 E-value=4.2e-06 Score=64.05 Aligned_cols=84 Identities=15% Similarity=0.258 Sum_probs=68.8
Q ss_pred cccc-cCchhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 2 FADK-FGRKPVILAFCFPYILSWLLILF---AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 2 l~dr-~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
+.|| +|-|..-++-++...+|-++.+. .+.+|.+..+|++.|+|.-.....-..|..-|+..|+.+.++++..+..
T Consensus 102 lidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvA 181 (459)
T KOG4686|consen 102 LIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVA 181 (459)
T ss_pred eehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHH
Confidence 4554 58887777777777777777664 6889999999999999988888888999999999999999999988877
Q ss_pred HHhHHHHH
Q psy7965 78 TLGVLYVY 85 (257)
Q Consensus 78 ~~G~~~~~ 85 (257)
-+|..+-.
T Consensus 182 R~GstvNf 189 (459)
T KOG4686|consen 182 RLGSTVNF 189 (459)
T ss_pred Hhhceeee
Confidence 77765443
No 141
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.33 E-value=2.9e-06 Score=67.17 Aligned_cols=58 Identities=33% Similarity=0.572 Sum_probs=49.5
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcccccccccee-eecc
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMF-IGEI 60 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~-i~e~ 60 (257)
++||+|||+.-+...++.+++++ +-..+|++.++++|++.|++....+.+--++ +.|+
T Consensus 92 laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh 150 (354)
T PF05631_consen 92 LADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEH 150 (354)
T ss_pred HHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999996 4456899999999999999999888877654 4555
No 142
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.30 E-value=1.1e-06 Score=74.00 Aligned_cols=100 Identities=14% Similarity=0.040 Sum_probs=65.4
Q ss_pred CcccccCchhHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLL--ILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
+++||+|||+.+.....+..++..+ ....++.....+.+++.|+..............|.+|++.||.+.++.+....
T Consensus 316 ~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~ 395 (467)
T PRK09556 316 WLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAY 395 (467)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 3689999998877655444443322 22334666677788888865443333334566799999999999999987777
Q ss_pred H-hHHHHHHhhhh-----------------hHHHHHhhcC
Q psy7965 79 L-GVLYVYCLGLS-----------------TYTVIAIGCL 100 (257)
Q Consensus 79 ~-G~~~~~~~~~~-----------------~Wr~~~~~~~ 100 (257)
+ |..++|.+.+. +|+..|.+..
T Consensus 396 l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~ 435 (467)
T PRK09556 396 LFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALD 435 (467)
T ss_pred HHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHH
Confidence 5 54444443322 4888876654
No 143
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.28 E-value=7.1e-07 Score=72.41 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=65.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA-----------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALG 70 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~ 70 (257)
+.||+|||+.+..+.++.+++..+..+. ++.+.+..+.++.+++.+...+...+++.|.+|+|+||+.+
T Consensus 268 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~ 347 (356)
T TIGR00901 268 IMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQM 347 (356)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHH
Confidence 6799999999998888888776655543 34577888889999999999999999999999999999999
Q ss_pred hHHHHHHH
Q psy7965 71 SFFQMFLT 78 (257)
Q Consensus 71 ~~~~~~~~ 78 (257)
++.++..+
T Consensus 348 g~~~~~~~ 355 (356)
T TIGR00901 348 ALLSSLSA 355 (356)
T ss_pred HHHHHHHh
Confidence 99887654
No 144
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.28 E-value=4.4e-06 Score=69.67 Aligned_cols=89 Identities=21% Similarity=0.326 Sum_probs=74.3
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhccccccccceeeeccCC-------ccchhhhhhHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA-QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-------SSIRGALGSFF 73 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-------~~~r~~~~~~~ 73 (257)
++||+|||+.+.++.++..++.+...+. ++.+.+.+..++.|++.+...+...++++|..+ ++++|...++.
T Consensus 280 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 359 (437)
T TIGR00792 280 LVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVR 359 (437)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHH
Confidence 6899999999999998888887777664 456677788888999999988888999988865 55679999999
Q ss_pred HHHHHHhHHHHHHhhhh
Q psy7965 74 QMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 74 ~~~~~~G~~~~~~~~~~ 90 (257)
+....+|..+++.+.+.
T Consensus 360 ~~~~~~g~~lg~~i~g~ 376 (437)
T TIGR00792 360 TFVRKLGQALAGFLVGL 376 (437)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99889998888877665
No 145
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.25 E-value=3e-06 Score=72.11 Aligned_cols=90 Identities=20% Similarity=0.113 Sum_probs=62.4
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQN----IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
+++||+|||+.++++..+.+++..+.++..+ ...+...-+...++..+..+....+.+|.+|++.|+++.++.+..
T Consensus 357 ~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~ 436 (502)
T TIGR00887 357 FLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAAS 436 (502)
T ss_pred HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHH
Confidence 3689999999999888877777666554321 111111112222222334556677889999999999999999999
Q ss_pred HHHhHHHHHHhhhh
Q psy7965 77 LTLGVLYVYCLGLS 90 (257)
Q Consensus 77 ~~~G~~~~~~~~~~ 90 (257)
..+|.++++.+...
T Consensus 437 ~~~~~~~~~~~~~~ 450 (502)
T TIGR00887 437 GKAGAIIGQFGFLY 450 (502)
T ss_pred hhhHHHHHHHHhhh
Confidence 99999888876544
No 146
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.25 E-value=8.7e-07 Score=73.01 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=80.5
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH-HHHHHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF-FQMFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G 80 (257)
+.||+|||+.+.++.++.+++..+...++|.+.+++.+++.|++.+........+..|..+++.++...+. .+....+|
T Consensus 277 l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg 356 (396)
T TIGR00882 277 IINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLA 356 (396)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHH
Confidence 67999999999999998888888777888888888999999998777666666677888888888887766 66778888
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+++.+.+. ||+..|.+.+
T Consensus 357 ~~~~~~l~G~l~~~~G~~~~f~~~~ 381 (396)
T TIGR00882 357 MIFLSTLAGNMYDSIGFQGAYLVLG 381 (396)
T ss_pred HHHHHHhHHHHHHhcccHHHHHHHH
Confidence 8888877766 7777776655
No 147
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.24 E-value=1.1e-05 Score=68.20 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=75.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILF----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
+.||+|||+.+.++..+.+++..+..+ ..+++.+....++.|++.+...+.......|..|+++|+.+.++.+...
T Consensus 314 l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 393 (485)
T TIGR00711 314 MGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTR 393 (485)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHH
Confidence 579999999999999888888887763 2346677777889999999888777777888899999999999999999
Q ss_pred HHhHHHHHHhhhh
Q psy7965 78 TLGVLYVYCLGLS 90 (257)
Q Consensus 78 ~~G~~~~~~~~~~ 90 (257)
.+|..+++.+.+.
T Consensus 394 ~~g~~ig~~i~g~ 406 (485)
T TIGR00711 394 QLGGSIGTALITT 406 (485)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888766
No 148
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.23 E-value=3.9e-06 Score=65.87 Aligned_cols=100 Identities=23% Similarity=0.411 Sum_probs=80.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHhhhccccccccceeeeccCCc-cchhhhhhHHHH-H
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQN--IYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-SIRGALGSFFQM-F 76 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~-~ 76 (257)
.++||+|||+.+..+.....++.++..+..+ .+.+++.|...|++.+...+....++.|+.|+ ++|+...+.... .
T Consensus 61 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (338)
T COG0477 61 PLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGA 140 (338)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 3689999998888888776666677777666 89999999999999999999999999999998 778998888877 5
Q ss_pred HHHhHHHHHHhhhh-------hHHHHHhhcC
Q psy7965 77 LTLGVLYVYCLGLS-------TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~G~~~~~~~~~~-------~Wr~~~~~~~ 100 (257)
..+|..+++.++.. +||..+....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (338)
T COG0477 141 GALGLALGPLLAGLLLGALLWGWRAAFLLAA 171 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 77777777755543 5888555544
No 149
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.20 E-value=1.6e-06 Score=70.93 Aligned_cols=69 Identities=17% Similarity=0.086 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh-----h-HHHHHhhcC
Q psy7965 31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS-----T-YTVIAIGCL 100 (257)
Q Consensus 31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~-Wr~~~~~~~ 100 (257)
+.........+.+++.+ ..+....++.|.+|+++|+++.++.+....+|..+++.+.+. + |+..+.+.+
T Consensus 311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~ 385 (399)
T TIGR00893 311 IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVA 385 (399)
T ss_pred hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHH
Confidence 44444444444445444 788889999999999999999999999999999999888766 5 887776554
No 150
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.17 E-value=4.7e-06 Score=70.00 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=80.5
Q ss_pred CcccccCch--hHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhh
Q psy7965 1 PFADKFGRK--PVILAFCFPYILSWLLILF--------AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALG 70 (257)
Q Consensus 1 ~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~ 70 (257)
++.||+|.| ++++.+.+++.+..+...+ .++-+.+.+.-++.|+..|..++..-++.+|..|+++.+...
T Consensus 339 ~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efF 418 (477)
T PF11700_consen 339 WLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFF 418 (477)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHH
Confidence 367999999 8999998888776666655 577888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhHHHHHHhhhh
Q psy7965 71 SFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 71 ~~~~~~~~~G~~~~~~~~~~ 90 (257)
+++....-....++|++-+.
T Consensus 419 gly~i~gk~ss~lGPll~g~ 438 (477)
T PF11700_consen 419 GLYAITGKASSWLGPLLFGL 438 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998776
No 151
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.16 E-value=3.6e-06 Score=69.49 Aligned_cols=87 Identities=21% Similarity=0.157 Sum_probs=75.9
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHH
Q psy7965 4 DKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLY 83 (257)
Q Consensus 4 dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~ 83 (257)
||++.|+.+..+.++.+++.++.+.+++++.+.+...+.|++.+...+...+++.|..|+++||+++++.+....+|..+
T Consensus 269 ~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 348 (400)
T PRK11646 269 KRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAI 348 (400)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHh
Confidence 45676777788888888888888888888888788888899888888888999999999999999999999999999999
Q ss_pred HHHhhhh
Q psy7965 84 VYCLGLS 90 (257)
Q Consensus 84 ~~~~~~~ 90 (257)
+|.+++.
T Consensus 349 g~~l~G~ 355 (400)
T PRK11646 349 GYIGGGW 355 (400)
T ss_pred cccchHH
Confidence 9988877
No 152
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.15 E-value=5.7e-05 Score=60.99 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=68.9
Q ss_pred cccccC-----chhHHHH-HHHHHHHHHHHHHHh-----h--------hH---HHHHHHHHHHhhhccccccccceeeec
Q psy7965 2 FADKFG-----RKPVILA-FCFPYILSWLLILFA-----Q--------NI---YMLFVARFIAGVGTGGLCAIIPMFIGE 59 (257)
Q Consensus 2 l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~--------~~---~~~~~~r~l~G~~~g~~~~~~~~~i~e 59 (257)
.+|+.+ ||.-+++ +..+...+..+..++ . .+ ....+...+.|+|.+...+...++++|
T Consensus 37 ~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D 116 (403)
T PF03209_consen 37 RSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLAD 116 (403)
T ss_pred ccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHh
Confidence 589888 7776666 666666655555442 2 11 234556678999999999999999999
Q ss_pred cCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 60 IAESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 60 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
..|+|+|+++.++..+...+|.+++..+.+.
T Consensus 117 ~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~ 147 (403)
T PF03209_consen 117 LAPEERRPRVVAIVWVMLIVGIIVSAIVFGR 147 (403)
T ss_pred cCCHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888998888877665
No 153
>PRK10504 putative transporter; Provisional
Probab=98.14 E-value=3.1e-06 Score=71.42 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=74.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
+.||+|||+++..+.++..++..+..+. ++.+.+.+..++.|++.+...+....++.+..|+++|+.+.++.+....
T Consensus 320 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 399 (471)
T PRK10504 320 VVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQ 399 (471)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHH
Confidence 6799999999999998888887766653 3344455567788888888888888999999999999999999999999
Q ss_pred HhHHHHHHhhhh
Q psy7965 79 LGVLYVYCLGLS 90 (257)
Q Consensus 79 ~G~~~~~~~~~~ 90 (257)
+|..+++.+.+.
T Consensus 400 ~g~~ig~~i~g~ 411 (471)
T PRK10504 400 LSMSIGVTIAGL 411 (471)
T ss_pred HHHHHHHHHHHH
Confidence 999988888766
No 154
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.13 E-value=3.8e-06 Score=68.93 Aligned_cols=88 Identities=10% Similarity=0.062 Sum_probs=74.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH-HHHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ-MFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G 80 (257)
+.||+|+|+++..+.++.+++.+..+..++.+.+++..++.|++.+...+....++.+. +++++++..+..+ ....+|
T Consensus 263 l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g 341 (382)
T PRK11128 263 LFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGS 341 (382)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHH
Confidence 57999999999999999998888888889999999999999999998888888888887 5666788888875 556677
Q ss_pred HHHHHHhhhh
Q psy7965 81 VLYVYCLGLS 90 (257)
Q Consensus 81 ~~~~~~~~~~ 90 (257)
..+++.+++.
T Consensus 342 ~~ig~~i~G~ 351 (382)
T PRK11128 342 IAIMTVLSGF 351 (382)
T ss_pred HHHHHHHHHH
Confidence 7788877766
No 155
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.10 E-value=5.1e-05 Score=63.85 Aligned_cols=89 Identities=22% Similarity=0.293 Sum_probs=64.2
Q ss_pred cccccCchhHHHH-HHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhccccccccceeeeccCCccch------------
Q psy7965 2 FADKFGRKPVILA-FCFPYILSWLLILFA--QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR------------ 66 (257)
Q Consensus 2 l~dr~Grr~~l~~-~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r------------ 66 (257)
++|+-|+||-++. ...+..+.+....+. ++++...+.-++.-++.+.....-.+++.|..+++++
T Consensus 93 ~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~ 172 (477)
T PF11700_consen 93 IADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGN 172 (477)
T ss_pred HHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCC
Confidence 5798877776555 555555666666663 3455555666666678888888889999999999998
Q ss_pred --------------hhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 67 --------------GALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 67 --------------~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
++..+.-.....+|.++..++...
T Consensus 173 ~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~ 210 (477)
T PF11700_consen 173 ISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLL 210 (477)
T ss_pred CChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777777766555433
No 156
>PRK11462 putative transporter; Provisional
Probab=98.10 E-value=3.2e-05 Score=65.07 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=62.7
Q ss_pred ccc----ccCchhH-HHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccccceeeeccCC-ccchhhh
Q psy7965 2 FAD----KFGRKPV-ILAFCFPYILSWLLILFAQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-SSIRGAL 69 (257)
Q Consensus 2 l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~ 69 (257)
++| |+||||- ++++.+..+++..+.-..++ ...+.+.-.+..++.......-.++.+|+++ +++|.+.
T Consensus 68 ~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l 147 (460)
T PRK11462 68 LADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISL 147 (460)
T ss_pred hhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHH
Confidence 466 4788765 45577777777766554442 3345555566677777777888889999987 7999999
Q ss_pred hhHHHHHHHHhHHHHHHh
Q psy7965 70 GSFFQMFLTLGVLYVYCL 87 (257)
Q Consensus 70 ~~~~~~~~~~G~~~~~~~ 87 (257)
.++...+..+|..+++.+
T Consensus 148 ~s~r~~~~~iG~~~~~~~ 165 (460)
T PRK11462 148 QSWRFVLATAGGMLSTVL 165 (460)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888887766555
No 157
>PRK09848 glucuronide transporter; Provisional
Probab=98.08 E-value=1.8e-05 Score=66.32 Aligned_cols=89 Identities=19% Similarity=0.229 Sum_probs=73.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhccccccccceeeeccCCcc-------chhhhhhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS-------IRGALGSF 72 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~-------~r~~~~~~ 72 (257)
+.||+|+|+++.++.++..++.+...+.+ +.+.+++..++.|+|.+...+...+..+|..|.+ ++|...++
T Consensus 287 l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~ 366 (448)
T PRK09848 287 MVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL 366 (448)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH
Confidence 57999999999999998888887776643 5677777888999999999999999999988754 35888899
Q ss_pred HHHHHHHhHHHHHHhhhh
Q psy7965 73 FQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~~~ 90 (257)
.+....+|..+++.+.+.
T Consensus 367 ~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 367 FSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888776554
No 158
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.08 E-value=7.7e-06 Score=67.57 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=68.5
Q ss_pred cccccCchhHHH-HHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965 2 FADKFGRKPVIL-AFCFPYILSWLLILF-----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM 75 (257)
Q Consensus 2 l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 75 (257)
++||+|||+.+. .+.+..+++.+.... .++.+...+..++.|++.+...+. ...+.|.. +++|+++.++.+.
T Consensus 280 l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~ 357 (402)
T TIGR00897 280 VGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNL 357 (402)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHH
Confidence 689999998764 333434443333322 235666777888888888775443 45566764 5689999999999
Q ss_pred HHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 76 FLTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 76 ~~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
...+|..++|.+.+. ||+..+++.+
T Consensus 358 ~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a 387 (402)
T TIGR00897 358 SAGLSAFLAPAIAVLFIGFFGAIGVVWIFA 387 (402)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 999999999988766 7777776655
No 159
>PRK10054 putative transporter; Provisional
Probab=98.08 E-value=8.2e-06 Score=67.27 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=77.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA-QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+.||+++|+.+..+..+..++.+...+. ++.+.+++...+.|+|.+...|.....+.|..|++.|+.+.+..+ ...+|
T Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G 345 (395)
T PRK10054 267 RLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLG 345 (395)
T ss_pred HHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHH
Confidence 4799999999999988888887777664 567777888899999998888888889999999999999988654 45578
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..++|.+++. +-+..|.+.+
T Consensus 346 ~~~Gp~~~G~l~~~~g~~~~~~~~~ 370 (395)
T PRK10054 346 AAINPLVSGVILTTLPPWSLFVILA 370 (395)
T ss_pred HHHHHHHHHHHHHHcChhhHHHHHH
Confidence 8888888776 4444444443
No 160
>PRK03699 putative transporter; Provisional
Probab=98.07 E-value=4e-06 Score=69.05 Aligned_cols=98 Identities=10% Similarity=0.085 Sum_probs=76.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||+.+.....+..+...+....++...+.+..++.|++.+..++....+..|..| ++++...+.......+|.
T Consensus 264 l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~ 342 (394)
T PRK03699 264 IVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGT 342 (394)
T ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHH
Confidence 6899999999998887777776666667777777777888999888888887777777775 446777888877888899
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++|.+.+. ||+..+++..
T Consensus 343 ~i~p~~~G~l~~~~g~~~~~~~~~ 366 (394)
T PRK03699 343 MLTFVVTSPIVAHFGLQAALLTAN 366 (394)
T ss_pred HHHHHHHHHHHHHhCchhhhhhhH
Confidence 888888766 7777766555
No 161
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.07 E-value=6.1e-06 Score=70.11 Aligned_cols=89 Identities=13% Similarity=0.030 Sum_probs=76.0
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
+.||+|||+.+..+.++..++.+..... ++.+...+..++.|+|.|...+.....+.+..|+++++.+.++.+....
T Consensus 318 l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (495)
T PRK14995 318 LVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYE 397 (495)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHH
Confidence 6799999999998888888777655442 3556667788999999999988888889999999999999999999999
Q ss_pred HhHHHHHHhhhh
Q psy7965 79 LGVLYVYCLGLS 90 (257)
Q Consensus 79 ~G~~~~~~~~~~ 90 (257)
+|..+|+.+.+.
T Consensus 398 lG~~~G~ai~g~ 409 (495)
T PRK14995 398 LGAGLGIAIFGL 409 (495)
T ss_pred HHHHHHHHHHHH
Confidence 999999888776
No 162
>KOG2816|consensus
Probab=98.06 E-value=1.5e-05 Score=66.39 Aligned_cols=88 Identities=22% Similarity=0.362 Sum_probs=72.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh--hccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGV--GTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL 79 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~--~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 79 (257)
++||+|||..+....+...+......+.. +|.++ +.|+ +.+.......++++|....++|....++.......
T Consensus 85 lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~ 159 (463)
T KOG2816|consen 85 LSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGA 159 (463)
T ss_pred hhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHH
Confidence 68999999999999999999888888765 44433 4443 34455777889999999999999999999999999
Q ss_pred hHHHHHHhhhhhHHH
Q psy7965 80 GVLYVYCLGLSTYTV 94 (257)
Q Consensus 80 G~~~~~~~~~~~Wr~ 94 (257)
+..++|.++...+|.
T Consensus 160 ~~~~~p~~~~~~~~~ 174 (463)
T KOG2816|consen 160 GLVIGPALGGYLVKF 174 (463)
T ss_pred HHhHHHHHHHHHHHh
Confidence 999999999884444
No 163
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.06 E-value=8e-06 Score=67.72 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=59.9
Q ss_pred CcccccCchhH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965 1 PFADKFGRKPV-ILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL 79 (257)
Q Consensus 1 ~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 79 (257)
+++||+|||+. .....++..++..+....++......+-.+.+++.....+.......|.+|+++|+.+.++.+....+
T Consensus 301 ~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~ 380 (412)
T TIGR02332 301 RHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNI 380 (412)
T ss_pred HHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhh
Confidence 36899997775 33344344443322222222222222222333333333344456667889999999999999999999
Q ss_pred hHHHHHHhhhh------hHHHHHhh
Q psy7965 80 GVLYVYCLGLS------TYTVIAIG 98 (257)
Q Consensus 80 G~~~~~~~~~~------~Wr~~~~~ 98 (257)
|.+++|.+.+. +|+..+.+
T Consensus 381 g~~~~p~~~g~i~~~~g~~~~~~~~ 405 (412)
T TIGR02332 381 GSALSPFLIGILKDATGSFNSGLWF 405 (412)
T ss_pred hhhhhhhhcccccccCCCCchhHHH
Confidence 99999877655 47776644
No 164
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.05 E-value=9.4e-06 Score=68.15 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=58.5
Q ss_pred Cccccc--CchhHH-HHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965 1 PFADKF--GRKPVI-LAFCFPYILSWLLILF--AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM 75 (257)
Q Consensus 1 ~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 75 (257)
+++||+ |||+.. .....+..++.+...+ ..+.....++.++.|.+..........+..|.+|+++||++.++.+.
T Consensus 311 ~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 390 (452)
T PRK11273 311 WMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 390 (452)
T ss_pred HHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHH
Confidence 368999 555432 2222333333332222 23444444555555554333223334456799999999999999987
Q ss_pred HHHHhHH-HHHHhhhh-----hHHHHHhhcC
Q psy7965 76 FLTLGVL-YVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 76 ~~~~G~~-~~~~~~~~-----~Wr~~~~~~~ 100 (257)
...+|.. .+|.+.+. ||+..|.+..
T Consensus 391 ~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~ 421 (452)
T PRK11273 391 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 421 (452)
T ss_pred HHHHHHHHhhhhhHHHHHHHhcchHHHHHHH
Confidence 7777654 46666554 7888886655
No 165
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.04 E-value=4e-06 Score=67.62 Aligned_cols=84 Identities=27% Similarity=0.394 Sum_probs=71.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
+.||+|+|+..........+..+..... ++....++.-++.|++.+...+....++.|..|+++||++.++.+...+
T Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 345 (352)
T PF07690_consen 266 LSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGS 345 (352)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5799999888888777777766665543 3457777788889999999999999999999999999999999999999
Q ss_pred HhHHHHH
Q psy7965 79 LGVLYVY 85 (257)
Q Consensus 79 ~G~~~~~ 85 (257)
+|..++|
T Consensus 346 ~~~~igP 352 (352)
T PF07690_consen 346 LGGIIGP 352 (352)
T ss_dssp HHHHHHH
T ss_pred HHHHHCC
Confidence 9999887
No 166
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.03 E-value=8.6e-06 Score=76.16 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=78.2
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.+...+...+++.+..|+++||+++++.+....+|.
T Consensus 292 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~ 371 (1146)
T PRK08633 292 LSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGM 371 (1146)
T ss_pred HhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHH
Confidence 67999999999999888888888888888888888999999999999888899999999999999999999988888888
Q ss_pred HHHHHhhhh
Q psy7965 82 LYVYCLGLS 90 (257)
Q Consensus 82 ~~~~~~~~~ 90 (257)
++++.++..
T Consensus 372 ~~~~~~~~~ 380 (1146)
T PRK08633 372 LLFLALTTL 380 (1146)
T ss_pred HHHHHHHHH
Confidence 666665544
No 167
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.02 E-value=1e-05 Score=66.97 Aligned_cols=88 Identities=15% Similarity=0.076 Sum_probs=69.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
++||+|||+.+.++.++..++.++.... ++.+.+.+..++.|++.+...+........ .++++||+..+..+..
T Consensus 274 l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~ 352 (406)
T PRK15402 274 LTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGML 352 (406)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHH
Confidence 5799999999999888887777766653 246667788889999998877766555443 3458999999999999
Q ss_pred HHHhHHHHHHhhhh
Q psy7965 77 LTLGVLYVYCLGLS 90 (257)
Q Consensus 77 ~~~G~~~~~~~~~~ 90 (257)
..+|..+++.+...
T Consensus 353 ~~~~~~~g~~~~~~ 366 (406)
T PRK15402 353 SMLIFTVGIELSKH 366 (406)
T ss_pred HHHHHHHHHHHHHh
Confidence 98888888888776
No 168
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.00 E-value=2.9e-06 Score=71.69 Aligned_cols=99 Identities=8% Similarity=-0.065 Sum_probs=64.8
Q ss_pred CcccccCch-------hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHH
Q psy7965 1 PFADKFGRK-------PVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF 73 (257)
Q Consensus 1 ~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~ 73 (257)
+++||+||| ....+..++.++..++....++.+...+..++.+++.+........++.|.. +++||...++.
T Consensus 310 ~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~ 388 (476)
T PLN00028 310 YLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLT 388 (476)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhh
Confidence 368999875 2333333333344444445556555555666667666555566666677765 47899999999
Q ss_pred HHHHHHhHHHHHHhhhh----hHHHHHhhcC
Q psy7965 74 QMFLTLGVLYVYCLGLS----TYTVIAIGCL 100 (257)
Q Consensus 74 ~~~~~~G~~~~~~~~~~----~Wr~~~~~~~ 100 (257)
+.+..+|..+++.+... +|+..|.+.+
T Consensus 389 ~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~ 419 (476)
T PLN00028 389 GAGGNVGAVLTQLLFFTGSSYSTETGISLMG 419 (476)
T ss_pred hccccHHHHHHHHHHHhcCCccHhhHHHHHH
Confidence 88888888888777543 5887776665
No 169
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.99 E-value=1.2e-05 Score=66.98 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=61.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQN--IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL 79 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 79 (257)
+.||+|||+.+..+.++..+..+.....++ ...+....+..+++..+..+..+.++.|.+|+++|++++++......+
T Consensus 289 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 368 (426)
T PRK12307 289 CADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAAT 368 (426)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhH
Confidence 689999999999888777666555443322 222222222222222333445567789999999999999999888888
Q ss_pred hHHHHHHhhhh
Q psy7965 80 GVLYVYCLGLS 90 (257)
Q Consensus 80 G~~~~~~~~~~ 90 (257)
|..++|.+.+.
T Consensus 369 ~~~~gp~~~g~ 379 (426)
T PRK12307 369 SGTFNSMAATW 379 (426)
T ss_pred HHHHHHHHHHH
Confidence 99999888766
No 170
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.95 E-value=1.5e-05 Score=65.61 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=70.0
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccccccccceeeeccCC-ccchhhhhhHHHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-SSIRGALGSFFQMFLTL 79 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~ 79 (257)
+.||+|||+.+..+..+..++..+....+ +...+ .-.+.|++.+...+.......|..+ +++|++..++.+....+
T Consensus 263 l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 340 (393)
T PRK09705 263 MARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFI 340 (393)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 68999999999988877777766554323 22222 2346688888887877666667775 67899999999988888
Q ss_pred hHHHHHHhhhh------hHHHHHhhcC
Q psy7965 80 GVLYVYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 80 G~~~~~~~~~~------~Wr~~~~~~~ 100 (257)
+..++|.+.++ +|+..+.+..
T Consensus 341 ~~~~gp~~~G~l~~~~g~~~~~~~~~~ 367 (393)
T PRK09705 341 IAGLAPWFSGVLRSISGNYLMDWAFHA 367 (393)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 88888888776 3555555543
No 171
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.95 E-value=1.3e-05 Score=65.90 Aligned_cols=99 Identities=15% Similarity=-0.037 Sum_probs=70.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHhhhccccccccceeeeccCCc-cchhhhhhHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILF------AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-SIRGALGSFFQ 74 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~ 74 (257)
+.||+|+|+.+..+.++.++..+.... .++...+.....+.+++.|...+.....+.+..++ +++++.+++.+
T Consensus 267 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 346 (390)
T TIGR02718 267 LVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQ 346 (390)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 679999999998877766443333221 12333444555666677777777777777777776 88999999999
Q ss_pred HHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 75 MFLTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 75 ~~~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
...++|..+++.+++. |++..|...+
T Consensus 347 ~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~ 377 (390)
T TIGR02718 347 STRDLGELIASSIAGYLTDRFGYAGGFLSGT 377 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 9999999999999876 6666665544
No 172
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.95 E-value=1.4e-05 Score=64.97 Aligned_cols=88 Identities=23% Similarity=0.420 Sum_probs=74.8
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++|..|-|++++++.+...+...+..+.++...+-+..++-|++.+. ..+-.+|+-...|+++-.++.+...+...+|.
T Consensus 64 ltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~ 142 (412)
T PF01770_consen 64 LTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGR 142 (412)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999998887 56667888888899888888888777777776
Q ss_pred HHHHHhhhh
Q psy7965 82 LYVYCLGLS 90 (257)
Q Consensus 82 ~~~~~~~~~ 90 (257)
.++.+++-.
T Consensus 143 ~~s~~lgQl 151 (412)
T PF01770_consen 143 FISSLLGQL 151 (412)
T ss_pred HHHHHHHHH
Confidence 666666544
No 173
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.95 E-value=2.4e-05 Score=65.29 Aligned_cols=89 Identities=19% Similarity=0.347 Sum_probs=76.3
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhccccccccceeeeccCCc-------cchhhhhh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-------SIRGALGS 71 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-------~~r~~~~~ 71 (257)
+++||+|+|+++..+.++.+++.++..+.+ |.+.+++.-.+.|++.+...+...++++|..+. ++.|...+
T Consensus 282 ~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 282 RLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 368999999999999999999999988876 899999999999999999999999999999874 33477777
Q ss_pred HHHHHHHHhHHHHHHhhh
Q psy7965 72 FFQMFLTLGVLYVYCLGL 89 (257)
Q Consensus 72 ~~~~~~~~G~~~~~~~~~ 89 (257)
......-+|..+++.+..
T Consensus 362 ~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 777777777777776554
No 174
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.92 E-value=1.7e-05 Score=67.43 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=84.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.+|+++++.+..+.++.+++.+..+++++.+..+++.++.|++.....+...+.+.+..|++.||++++++++....+.
T Consensus 277 l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~ 356 (524)
T PF05977_consen 277 LRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGM 356 (524)
T ss_pred hhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHH
Confidence 45788888999999999999999999999999999999999999999888889999999999999999999988877777
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+|.++.+. |-+..+.+.+
T Consensus 357 ~lGsll~G~la~~~g~~~al~~a~ 380 (524)
T PF05977_consen 357 PLGSLLWGFLADHFGVRTALLIAG 380 (524)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHH
Confidence 777777666 5565555444
No 175
>PRK15075 citrate-proton symporter; Provisional
Probab=97.90 E-value=1.4e-05 Score=66.82 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=57.7
Q ss_pred CcccccCchhHHHHHHHHHHHHHHH-HH---HhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH-H
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLL-IL---FAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ-M 75 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~-~~---~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~ 75 (257)
+++||+|||+.+..+.++..+..+. .. ..++...+....++.|++.+...+....++.|.+|+++|+...++.+ .
T Consensus 296 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~ 375 (434)
T PRK15075 296 ALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSL 375 (434)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHH
Confidence 3689999999988765544332221 11 12334444444556666666666666778999999999999999854 3
Q ss_pred HHHHhHHHHHHhhhh
Q psy7965 76 FLTLGVLYVYCLGLS 90 (257)
Q Consensus 76 ~~~~G~~~~~~~~~~ 90 (257)
+..++..++|.+.+.
T Consensus 376 ~~~~~g~~~p~~~g~ 390 (434)
T PRK15075 376 ATAIFGGFTPAISTW 390 (434)
T ss_pred HHHHHhhhHHHHHHH
Confidence 444445556666544
No 176
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.90 E-value=8.6e-05 Score=62.78 Aligned_cols=89 Identities=12% Similarity=0.176 Sum_probs=66.3
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhccccccccceeeeccCC-------ccchhhh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILF-----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-------SSIRGAL 69 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-------~~~r~~~ 69 (257)
++||+|+|+.+.++.++..++.+.... .++.+.+++.-++.|++.+...+...++++|..+ .++.|..
T Consensus 289 l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~ 368 (473)
T PRK10429 289 LVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIA 368 (473)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHH
Confidence 679999999999888877766655432 3456677777788999999999988999999966 3334557
Q ss_pred hhHHHHHHHHhHHHHHHhhhh
Q psy7965 70 GSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 70 ~~~~~~~~~~G~~~~~~~~~~ 90 (257)
.+......-+|..+++.+.+.
T Consensus 369 ~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 369 YSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776666544
No 177
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.88 E-value=2.8e-05 Score=66.12 Aligned_cols=87 Identities=7% Similarity=0.064 Sum_probs=75.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQN---------IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
+.||++.++.+.++.++.+++.+..+...+ .+.+...+++.|+|++...|....++.+..|++.||++++.
T Consensus 343 l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~ 422 (500)
T PRK09584 343 MGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGS 422 (500)
T ss_pred hCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHH
Confidence 456777778899999999999988877655 45788899999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhh
Q psy7965 73 FQMFLTLGVLYVYCLG 88 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~ 88 (257)
+.....+|..++..+.
T Consensus 423 ~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 423 WFLTTAGAALIAGYVA 438 (500)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888878777766554
No 178
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.87 E-value=4.6e-05 Score=53.76 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=75.0
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.+++|.|+.++++.++..+-.... +-++.+.++.+-.+.|++.+..++....++.+..++++|++..+++-.....+.
T Consensus 60 iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~ 138 (156)
T PF05978_consen 60 IVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSL 138 (156)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHH
Confidence 3578999999999999988655543 457888999999999999999999999999999999999999998877777777
Q ss_pred HHHHHhhhh
Q psy7965 82 LYVYCLGLS 90 (257)
Q Consensus 82 ~~~~~~~~~ 90 (257)
++|.++...
T Consensus 139 i~G~~~~~~ 147 (156)
T PF05978_consen 139 IFGNLFLFF 147 (156)
T ss_pred HHHHHHHHH
Confidence 777766543
No 179
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.84 E-value=2.7e-05 Score=65.77 Aligned_cols=88 Identities=11% Similarity=0.010 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHH
Q psy7965 13 LAFCFPYILSWLLILF---------AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLY 83 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~ 83 (257)
.++.++.+++.+..++ ..|++.+.+..++.|+|+....|....++.|..|++.||++++++.....+|..+
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l 432 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL 432 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888777664 3588999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh-----hHHHHHhhcC
Q psy7965 84 VYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 84 ~~~~~~~-----~Wr~~~~~~~ 100 (257)
++.+... +|...+...+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~ 454 (475)
T TIGR00924 433 GGYLATFGAVPQGVTGVFGKIG 454 (475)
T ss_pred HHHHHHHHhcccchhhHHHHHH
Confidence 8887665 4555554433
No 180
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.84 E-value=3.1e-05 Score=63.73 Aligned_cols=89 Identities=21% Similarity=0.360 Sum_probs=74.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh-hhHHHH----HHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH-
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA-QNIYML----FVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM- 75 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~----~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~- 75 (257)
+..|+|.|+++.++.+..++=..+.+.. ++.+.. +....++|+..|........++.+..|++.|++++++++.
T Consensus 266 ~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~ 345 (400)
T PF03825_consen 266 FLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSAL 345 (400)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 3578999999999999999988888876 554443 3335679999999999999999999999999999999765
Q ss_pred HHHHhHHHHHHhhhh
Q psy7965 76 FLTLGVLYVYCLGLS 90 (257)
Q Consensus 76 ~~~~G~~~~~~~~~~ 90 (257)
..++|..++..+++.
T Consensus 346 ~~Glg~~iG~~igG~ 360 (400)
T PF03825_consen 346 SFGLGGAIGSLIGGW 360 (400)
T ss_pred HhhHHHHHHHHHHHH
Confidence 567899998888877
No 181
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.84 E-value=2.2e-05 Score=64.11 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=61.5
Q ss_pred cccccCc---hhHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 2 FADKFGR---KPVILA-FCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 2 l~dr~Gr---r~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
++||..| |+.... ..++.++.....+...+.....+.-.+.|++.....+....+.+|.+|++.|+++.++.+...
T Consensus 246 ~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g 325 (368)
T TIGR00903 246 IPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTS 325 (368)
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHH
Confidence 4676654 343332 444444444444444444444455566777777777778889999999999999999999999
Q ss_pred HHhHHHHHHhhhh
Q psy7965 78 TLGVLYVYCLGLS 90 (257)
Q Consensus 78 ~~G~~~~~~~~~~ 90 (257)
.+|...+|.+...
T Consensus 326 ~~~~~~~~~~~~~ 338 (368)
T TIGR00903 326 RAISVALALAAML 338 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888777644
No 182
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.83 E-value=1.5e-05 Score=64.80 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh-----hHHHH
Q psy7965 30 QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS-----TYTVI 95 (257)
Q Consensus 30 ~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~Wr~~ 95 (257)
.+.....+..++.|+......+....++.|..|+++|+++.++.+....+|..+++.+.+. ||+..
T Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 308 ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 3455566666777776666566667788999999999999999999999999988887766 66654
No 183
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.83 E-value=6.1e-05 Score=62.09 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=68.0
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccc-hhhhhhHHHHHHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI-RGALGSFFQMFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~-r~~~~~~~~~~~~~G 80 (257)
+.||.++|+++..+. +.++..+...+.++.+...+..++.|++.+...+...+.+.|..|+|+ +|++.++.+....+|
T Consensus 264 l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~ 342 (393)
T PRK11195 264 LVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLA 342 (393)
T ss_pred HhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHH
Confidence 468889888887775 344445555666777777788889999999888888888888866665 799999999888888
Q ss_pred HHHHHHhhhh
Q psy7965 81 VLYVYCLGLS 90 (257)
Q Consensus 81 ~~~~~~~~~~ 90 (257)
..++..+...
T Consensus 343 ~~~~~~~~~~ 352 (393)
T PRK11195 343 MLLMLGLYSL 352 (393)
T ss_pred HHHHHHHHHH
Confidence 8877776655
No 184
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.81 E-value=2.8e-05 Score=64.96 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=46.4
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHH--H--hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLIL--F--AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
+++||+|||+.+..+.++.++..+... . .++....+..-.+.++..+...+....+++|++|++.|+.+.++.+..
T Consensus 301 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~ 380 (432)
T PRK10406 301 ALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV 380 (432)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence 368999999988776655443332221 1 122222222222222333333445667889999999999999997654
Q ss_pred HH
Q psy7965 77 LT 78 (257)
Q Consensus 77 ~~ 78 (257)
..
T Consensus 381 g~ 382 (432)
T PRK10406 381 AN 382 (432)
T ss_pred HH
Confidence 33
No 185
>KOG0569|consensus
Probab=97.81 E-value=0.00024 Score=59.37 Aligned_cols=88 Identities=23% Similarity=0.191 Sum_probs=63.3
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhh---hHH------HHHHHHHHHh--hhccccccccceeeeccCCccchhhhh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQ---NIY------MLFVARFIAG--VGTGGLCAIIPMFIGEIAESSIRGALG 70 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~------~~~~~r~l~G--~~~g~~~~~~~~~i~e~~~~~~r~~~~ 70 (257)
+.||+|||+.++.+..+..+..+++...- +.. ..+++.++.. ++.|. .|..+-+.+|.+|++.|..++
T Consensus 328 lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~-gpi~~fi~aELf~~~~R~aa~ 406 (485)
T KOG0569|consen 328 LIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGP-GPIPWFIGAELFPQSARSAAQ 406 (485)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCC-CchhHHHHHHhCCccchHHHH
Confidence 67999999999999999988888777632 111 1223333333 33332 678888999999999999999
Q ss_pred hHHHHHHHHhHHHHHHhhhh
Q psy7965 71 SFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 71 ~~~~~~~~~G~~~~~~~~~~ 90 (257)
++......+..++....-..
T Consensus 407 s~~~~~~w~~~fiv~~~fp~ 426 (485)
T KOG0569|consen 407 SVATAVNWLSNFIVGFAFPP 426 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99888887777665554443
No 186
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.80 E-value=1.6e-05 Score=64.17 Aligned_cols=90 Identities=14% Similarity=0.252 Sum_probs=82.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+|.||+|.|+++..+.++..+.++...+...-..+.++-++.|+..|..++.+-++.++..|++|-+...++++...-.+
T Consensus 310 ~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~ 389 (438)
T COG2270 310 FLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAA 389 (438)
T ss_pred HHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHH
Confidence 36899999999999999999999988888777788888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q psy7965 81 VLYVYCLGLS 90 (257)
Q Consensus 81 ~~~~~~~~~~ 90 (257)
..++|.+-..
T Consensus 390 S~~gp~lv~v 399 (438)
T COG2270 390 SFLGPFLVAV 399 (438)
T ss_pred HHHHHHHHHH
Confidence 9999988655
No 187
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.74 E-value=4.6e-05 Score=64.69 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=68.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHH---HHh-hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLI---LFA-QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
++||+|||+.+.++.++.++..+.. +.. ++...+.+.-++..+..|...+...++..+..+++.+++..++.+...
T Consensus 282 L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~ 361 (491)
T PRK11010 282 LMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALS 361 (491)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 6899999998887666655544332 232 344445555556555455455566788888999999999999999888
Q ss_pred HHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 78 TLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 78 ~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+|..+++.+.+. ||+..|.+..
T Consensus 362 ~lg~~~~~~~~G~l~~~~G~~~~f~~~~ 389 (491)
T PRK11010 362 AVGRVYVGPVAGWFVEAHGWPTFYLFSV 389 (491)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 8887766555554 7888777655
No 188
>PRK09848 glucuronide transporter; Provisional
Probab=97.73 E-value=0.00022 Score=59.90 Aligned_cols=88 Identities=13% Similarity=0.142 Sum_probs=51.2
Q ss_pred Cccccc----CchhHH-HHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHhhhccccccccceeeeccCCc-cchh
Q psy7965 1 PFADKF----GRKPVI-LAFCFPYILSWLLILFAQ-------NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-SIRG 67 (257)
Q Consensus 1 ~l~dr~----Grr~~l-~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~ 67 (257)
+++||. |||+.. .++.+...+...+....+ .....++...+.+++.+...+...++..|..+. ++|.
T Consensus 66 ~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~ 145 (448)
T PRK09848 66 RVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRA 145 (448)
T ss_pred eeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHH
Confidence 367885 777754 556555554444432111 122344455667777877777777777777654 6788
Q ss_pred hhhhHHHHHHH-----HhHHHHHHhh
Q psy7965 68 ALGSFFQMFLT-----LGVLYVYCLG 88 (257)
Q Consensus 68 ~~~~~~~~~~~-----~G~~~~~~~~ 88 (257)
+..++-+.+.+ ++..++|.+.
T Consensus 146 ~~~~~r~~~~~~~~~~~~~~~~p~i~ 171 (448)
T PRK09848 146 RLGAARGIAASLTFVCLAFLIGPSIK 171 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776554333 4445555554
No 189
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.71 E-value=0.00011 Score=60.24 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=63.9
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhccccccccce-eeeccCCccchhhhhhHHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILF-AQNIYMLFVARFIAGVGTGGLCAIIPM-FIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~~~~-~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
++.||+|+|+.+..+..+.+++.++... .++.+...+..++.+++.....+.... ...+..+++.++... .+....
T Consensus 257 ~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 334 (382)
T PRK10091 257 RLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFN 334 (382)
T ss_pred eeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHH
Confidence 4689999999999988888887765543 455556666666666665544443333 334444555555543 355667
Q ss_pred HhHHHHHHhhhh------hHHHHHhhcC
Q psy7965 79 LGVLYVYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 79 ~G~~~~~~~~~~------~Wr~~~~~~~ 100 (257)
+|..++|.+++. +|+..+.+.+
T Consensus 335 ~g~~~Gp~~~G~l~~~~~~~~~~~~~~~ 362 (382)
T PRK10091 335 LGSAIGAYCGGMMLTLGLAYNYVALPAA 362 (382)
T ss_pred HHHHHHHHHhHHHHHcccCcchHHHHHH
Confidence 888888877765 5777766654
No 190
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.68 E-value=3.2e-05 Score=63.19 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=83.1
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH-HHHHHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF-FQMFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G 80 (257)
+.+|+|.|+.++++..++.+=.+.+++++|.+.+.+.+.+.|+-.+........|+++.+|++..++...+ .+....+|
T Consensus 282 li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~ 361 (412)
T PF01306_consen 282 LINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIG 361 (412)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHH
T ss_pred HHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999988888777 46777888
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+.+.+++. |.+..|++.+
T Consensus 362 ~~i~s~~~G~lyd~~G~~~tylimg 386 (412)
T PF01306_consen 362 IIILSPLAGYLYDRIGFQHTYLIMG 386 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHhhHhhcCcHHHHHHHH
Confidence 8777777666 7777776666
No 191
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.66 E-value=5e-05 Score=63.48 Aligned_cols=66 Identities=20% Similarity=0.107 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 35 LFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 35 ~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.....+..|++...........+.|.+|+++|+++.++.+....+|..++|.+.+. +|+..|.+.+
T Consensus 340 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~ 410 (434)
T PRK11663 340 QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVIS 410 (434)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHH
Confidence 33344444543332222334567899999999999999999999999999877766 7888877665
No 192
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.65 E-value=0.00012 Score=61.08 Aligned_cols=99 Identities=21% Similarity=0.190 Sum_probs=70.8
Q ss_pred ccccc-----CchhHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHhhhccccccccceeeeccCC--ccchhhhh
Q psy7965 2 FADKF-----GRKPVILAFCFPYILSWLLILFA----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE--SSIRGALG 70 (257)
Q Consensus 2 l~dr~-----Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~ 70 (257)
++|-+ .||+-++++.++..++.+..+.. .+.....+.-++..+|........-+.+.|... ++.||...
T Consensus 47 lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lq 126 (433)
T PF03092_consen 47 LSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQ 126 (433)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHH
Confidence 46655 35666666777776666655553 346666677788889999999999999999973 34477888
Q ss_pred hHHHHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 71 SFFQMFLTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 71 ~~~~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
+.......+|.+++..+++. +.|..|.+.+
T Consensus 127 S~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 127 SFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 88888888888888877766 5666655544
No 193
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.63 E-value=0.00019 Score=58.70 Aligned_cols=88 Identities=19% Similarity=0.313 Sum_probs=66.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
+.||+|||+.+..+..+..++.++.... ++...+.....+.|++.+...+.......|..| ++|+++.++.+..
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 343 (385)
T TIGR00710 265 FIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTL 343 (385)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHH
Confidence 5799999999998888877777666553 234455666788899999888888888888886 6789999987655
Q ss_pred H-HHhHHHHHHhhhh
Q psy7965 77 L-TLGVLYVYCLGLS 90 (257)
Q Consensus 77 ~-~~G~~~~~~~~~~ 90 (257)
. ..|.+.++.++..
T Consensus 344 ~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 344 RLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHHHHHHHHHhc
Confidence 5 4566777766633
No 194
>PRK09669 putative symporter YagG; Provisional
Probab=97.62 E-value=0.0001 Score=61.84 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=67.8
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhccccccccceeeeccCCc-------cchhhhhhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILF--AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-------SIRGALGSF 72 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-------~~r~~~~~~ 72 (257)
++||+|+|+.+.++.++..+......+ .++.+.+++..++.|++.+...+...+.++|..+. +..|...+.
T Consensus 287 l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~ 366 (444)
T PRK09669 287 LLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFST 366 (444)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHH
Confidence 689999999999887766654443333 35677788888999999999999999999998862 234556777
Q ss_pred HHHHHHHhHHHHHHhhhh
Q psy7965 73 FQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~~~ 90 (257)
......+|..+++.+++.
T Consensus 367 ~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 367 NLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777778888888777654
No 195
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.62 E-value=0.00011 Score=59.51 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=63.9
Q ss_pred ccccc-CchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccC-CccchhhhhhHHHHHHHH
Q psy7965 2 FADKF-GRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIA-ESSIRGALGSFFQMFLTL 79 (257)
Q Consensus 2 l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~ 79 (257)
++||+ +||+.+..+.++.+++.+...+.++..... .-.+.|++.|...+.....+.+.. ++++++...++.+....+
T Consensus 255 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (355)
T TIGR00896 255 LARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYL 333 (355)
T ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 57999 567777778788887777666655433322 346789999998888777666554 456778888888888888
Q ss_pred hHHHHHHhhhh
Q psy7965 80 GVLYVYCLGLS 90 (257)
Q Consensus 80 G~~~~~~~~~~ 90 (257)
|..++|.+.+.
T Consensus 334 ~~~~gp~~~G~ 344 (355)
T TIGR00896 334 LAALGPLFVGV 344 (355)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 196
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.56 E-value=0.00019 Score=59.17 Aligned_cols=97 Identities=11% Similarity=-0.023 Sum_probs=67.8
Q ss_pred cccccCchhHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 2 FADKFGRKPVILAFCFP-YILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+.||.+ |+.+..+..+ .....++....++.+.+.+..++.|++.+...+....++.+..| +++++..+.......+|
T Consensus 275 l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg 352 (394)
T PRK10213 275 ILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLA 352 (394)
T ss_pred HHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHH
Confidence 457754 4444444444 34444444556677788888899999999988888888888887 55677777777777888
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+++.+++. |++..+...+
T Consensus 353 ~~~G~~l~G~l~~~~g~~~~~~~~~ 377 (394)
T PRK10213 353 NTCGAAIGGYALDNIGLTSPLMLSG 377 (394)
T ss_pred HHHHHHHHHHHHhccChhhHHHHHH
Confidence 8888888776 5665555543
No 197
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.53 E-value=0.00015 Score=60.01 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=62.0
Q ss_pred cccccCchhHHHHHHHHHHHHHHHH---HHh-hhHHHHHHHH----HHHhhhccccccccceeeeccCCccchhhhhhHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLI---LFA-QNIYMLFVAR----FIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF 73 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~r----~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~ 73 (257)
+.||+|||+.+..+.++..+..+.. +.. ++.+.+.+.- +..|++.+...+....++.+.+|.++++...+..
T Consensus 269 l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (402)
T PRK11902 269 LMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALA 348 (402)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 5799999999887777666554433 333 3455554444 4566777777888888999999887766544443
Q ss_pred HHHHHHhHHHHHHhhhh-hHHHHHhhcC
Q psy7965 74 QMFLTLGVLYVYCLGLS-TYTVIAIGCL 100 (257)
Q Consensus 74 ~~~~~~G~~~~~~~~~~-~Wr~~~~~~~ 100 (257)
..+...+..++..+... ||+..|...+
T Consensus 349 ~l~~~~~~~~~G~l~~~~G~~~~f~~~~ 376 (402)
T PRK11902 349 SVGRVYVGPTSGYLVEAYGWPGFYLMTV 376 (402)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 33332222222222222 8998887766
No 198
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.50 E-value=0.00024 Score=59.33 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=57.4
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHH-h-----hhHHHHHHHHHHHhhhccccccccceeeeccCCc-----------
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILF-A-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES----------- 63 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~----------- 63 (257)
+++||+|+|+++.++.+...+....... . .+.+.+.+..+...++.|......+.++.+++|+
T Consensus 308 ~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~ 387 (462)
T PRK15034 308 AISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG 387 (462)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence 4799999999999988877777644222 1 2456555555554444555455556666677764
Q ss_pred ----------cchhhhhhHHHHHHHHhHHHHHHh
Q psy7965 64 ----------SIRGALGSFFQMFLTLGVLYVYCL 87 (257)
Q Consensus 64 ----------~~r~~~~~~~~~~~~~G~~~~~~~ 87 (257)
++-|.+.++......+|.++.|.+
T Consensus 388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~ 421 (462)
T PRK15034 388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQA 421 (462)
T ss_pred chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHH
Confidence 145677777788888877777754
No 199
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.48 E-value=0.00054 Score=56.52 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=56.4
Q ss_pred cccccC-chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 2 FADKFG-RKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 2 l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
++||.+ +|+.+.++.++.++........++++.+++..++..+......|...++..+... +++.-.+-.-...++|
T Consensus 60 ~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiG 137 (400)
T PF03825_consen 60 IADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIG 137 (400)
T ss_pred HHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHH
Confidence 689985 6777777777777777777778889888888888888888778877777777765 2333333334444444
Q ss_pred HHHH
Q psy7965 81 VLYV 84 (257)
Q Consensus 81 ~~~~ 84 (257)
-+++
T Consensus 138 f~~~ 141 (400)
T PF03825_consen 138 FIVA 141 (400)
T ss_pred HHHH
Confidence 4444
No 200
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.48 E-value=0.00012 Score=68.62 Aligned_cols=89 Identities=9% Similarity=-0.082 Sum_probs=70.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHhhhccccccccceeeeccC
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA--------------------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIA 61 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~ 61 (257)
++|+.++++.+..+.++.+++.+...+. ++.+.+.++.++.|++.+...+...+++.+.+
T Consensus 284 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 363 (1140)
T PRK06814 284 LSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWA 363 (1140)
T ss_pred HhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 4567776666666666665555544442 66777888889999999999999999999999
Q ss_pred CccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 62 ESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 62 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
|+++||++++..+....+|..+++++.+.
T Consensus 364 p~~~~G~v~g~~~~~~~~~~~ig~~~~g~ 392 (1140)
T PRK06814 364 NPAHRARVIAANNVLNAAFMVAGTIILAL 392 (1140)
T ss_pred CcccceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888877776554
No 201
>KOG2504|consensus
Probab=97.45 E-value=0.00015 Score=61.48 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=89.7
Q ss_pred CcccccC--chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 1 PFADKFG--RKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 1 ~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
+++|+.. ++.+..++++..+++.+...++++++.+...-.+.|+..|.........+.|....++-..+.++.....+
T Consensus 355 ~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~g 434 (509)
T KOG2504|consen 355 LLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQG 434 (509)
T ss_pred hhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhH
Confidence 4678887 55567778888899999999999999999999999999999999988999999999999999999999999
Q ss_pred HhHHHHHHhhhh------hHHHHHhhcC
Q psy7965 79 LGVLYVYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 79 ~G~~~~~~~~~~------~Wr~~~~~~~ 100 (257)
++.+++|.+++. +|...|+..+
T Consensus 435 i~~l~gpPiag~~~d~tg~Y~~~f~~~g 462 (509)
T KOG2504|consen 435 IGALVGPPIAGLLYDITGNYDHAFYFCG 462 (509)
T ss_pred HHHHcCcccceeeeeccCCeeeehhhcC
Confidence 999999999887 5888887777
No 202
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.0026 Score=52.92 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=66.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhccccccccceeeeccCCc-------cchhhhhhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-------SIRGALGSF 72 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-------~~r~~~~~~ 72 (257)
+.+|+|+|+++..+.++..++.++.-+.+ +....++...+.++|.+...+...+.++|..+- ++-|...+.
T Consensus 295 L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~ 374 (467)
T COG2211 295 LVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSG 374 (467)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHH
Confidence 67899999999999999999999988865 688888888999999999999999999988753 223444555
Q ss_pred HHHHHHHhHHHHHHh
Q psy7965 73 FQMFLTLGVLYVYCL 87 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~ 87 (257)
.....=+|..++..+
T Consensus 375 ~tF~~K~g~ala~~~ 389 (467)
T COG2211 375 MTFFRKLGLALAGFI 389 (467)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444455544433
No 203
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.35 E-value=0.00027 Score=56.33 Aligned_cols=93 Identities=9% Similarity=-0.058 Sum_probs=67.1
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.||+|+|+++.++.++..++.++....++... ..+-++.|++.+..+|...+...+..|++ .+.+.++. ....+|.
T Consensus 201 l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg 277 (310)
T TIGR01272 201 VMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGG 277 (310)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcc
Confidence 679999999999888888887766666554333 34566899999999999999888888754 45566665 4556787
Q ss_pred HHHHHhhhh-----hHHHHHh
Q psy7965 82 LYVYCLGLS-----TYTVIAI 97 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~ 97 (257)
.+.|.+-+. +-+..++
T Consensus 278 ~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 278 AIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred hHHHHHHHHHHHhccchHHHH
Confidence 888765444 5555544
No 204
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.33 E-value=0.0013 Score=53.51 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=61.7
Q ss_pred cccccCchhH-HHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 2 FADKFGRKPV-ILAFCFPYILSWLLILFAQN---IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 2 l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~---~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
.+|..|+||- +-+...+..+++....++++ ++..++.-.+..++.......-.+++.+..++++-++..++-....
T Consensus 81 iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~g 160 (438)
T COG2270 81 IADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALG 160 (438)
T ss_pred hhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccc
Confidence 4788877665 44566666777777777655 4455555577888888888888999999999998888877765555
Q ss_pred HHhHHHHHHh
Q psy7965 78 TLGVLYVYCL 87 (257)
Q Consensus 78 ~~G~~~~~~~ 87 (257)
.+|.++.-+.
T Consensus 161 ylgs~i~li~ 170 (438)
T COG2270 161 YLGSVILLIF 170 (438)
T ss_pred cccchHHHHH
Confidence 6665554444
No 205
>PRK11462 putative transporter; Provisional
Probab=97.31 E-value=0.0026 Score=53.70 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=53.3
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhccccccccceeeeccCC-------ccchhhhhh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-------SSIRGALGS 71 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-------~~~r~~~~~ 71 (257)
+++||+|+|+++..+..+..+..++..+.+ +...+.+.-++.|++.+...+...++++|..+ .+..|...+
T Consensus 285 ~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a 364 (460)
T PRK11462 285 PLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFA 364 (460)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHH
Confidence 368999999988765554444444433322 23344455566787777766666777777766 233344455
Q ss_pred HHHHHHHHhHHHHHHhhhh
Q psy7965 72 FFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 72 ~~~~~~~~G~~~~~~~~~~ 90 (257)
......-+|..+++.+.+.
T Consensus 365 ~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 365 GTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555566666666555443
No 206
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.26 E-value=0.00051 Score=52.55 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=71.2
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA-------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ 74 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~ 74 (257)
+.|++|+|.++.++.+...+|......+ .+++.+.+..++.|.+.+...+.......+.+| ++||.+.++.-
T Consensus 59 l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk 137 (250)
T PF06813_consen 59 LYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILK 137 (250)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhh
Confidence 5799999999999999999998887663 367888888888888887777777777778897 57999999998
Q ss_pred HHHHHhHHHHHHhhh
Q psy7965 75 MFLTLGVLYVYCLGL 89 (257)
Q Consensus 75 ~~~~~G~~~~~~~~~ 89 (257)
....++..+-..+..
T Consensus 138 ~~~GLSaai~t~i~~ 152 (250)
T PF06813_consen 138 GFFGLSAAIFTQIYS 152 (250)
T ss_pred HHHHhHHHHHHHHHH
Confidence 888887766555543
No 207
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.23 E-value=0.00044 Score=56.23 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=56.0
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHH--hh--hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILF--AQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
+++||+|||+.+..+..+...+..+..+ .+ +...+.+.-.+.+++.|.........+.|..| +++|.+.++.+..
T Consensus 283 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~ 361 (366)
T TIGR00886 283 AISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAI 361 (366)
T ss_pred hHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHh
Confidence 3689999999888777766666555544 22 55555555555666666666667777888886 6899999998877
Q ss_pred HHHh
Q psy7965 77 LTLG 80 (257)
Q Consensus 77 ~~~G 80 (257)
..+|
T Consensus 362 ~~~g 365 (366)
T TIGR00886 362 GNLG 365 (366)
T ss_pred ccCC
Confidence 6665
No 208
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.00079 Score=54.54 Aligned_cols=95 Identities=21% Similarity=0.209 Sum_probs=67.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhh-------hHH----HHHHHHHHHhhhccccccccceeeeccCCccchhhh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ-------NIY----MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGAL 69 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~----~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~ 69 (257)
+++||+|.+|++.+....++++..+.+..+ +.. .++...+..|+|+|.. +..+..++|+ +-|.+
T Consensus 276 ~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv----fk~Ip~if~~-~~G~v 350 (417)
T COG2223 276 WLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV----FKMIPVIFPK-ETGAV 350 (417)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh----eeechHHHHh-hhhHH
Confidence 589999999999999988888888877753 333 3555556666666654 4556666654 66889
Q ss_pred hhHHHHHHHHhHHHHHHhhhh------hHHHHHhhcC
Q psy7965 70 GSFFQMFLTLGVLYVYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 70 ~~~~~~~~~~G~~~~~~~~~~------~Wr~~~~~~~ 100 (257)
.++......+|....|..-.. .++..|++..
T Consensus 351 ~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~ 387 (417)
T COG2223 351 TGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLL 387 (417)
T ss_pred HHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHH
Confidence 999999999987766655444 4666665554
No 209
>KOG3762|consensus
Probab=97.20 E-value=5.8e-05 Score=62.79 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=82.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH-HHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM-FLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~-~~~~G 80 (257)
+.+|+|+-+++..++.+..+=.+..+..+|.|..+..-+++|+..+..+..+.+|+++..||+.|..+.++.+. ...+|
T Consensus 429 lI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG 508 (618)
T KOG3762|consen 429 LIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLG 508 (618)
T ss_pred HHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999998754 33455
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
--+|.++++. +=|..|.+.+
T Consensus 509 ~g~GslIGG~~v~~fg~~ttf~~~g 533 (618)
T KOG3762|consen 509 KGLGSLIGGFVVERFGARTTFRIFG 533 (618)
T ss_pred cchhhhhhhhhheeehhHHHHHHHH
Confidence 5555555544 5555555554
No 210
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.18 E-value=0.0012 Score=54.01 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=56.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHH---H-hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH-H
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLIL---F-AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM-F 76 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~-~ 76 (257)
+.||+|||+.+..+..+..+..+... . ..+.+...++-.+.+.+.+...+....++.|..| ++|+.+.+..+. .
T Consensus 253 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 331 (377)
T PRK11102 253 FVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLR 331 (377)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHH
Confidence 57999999999888766544333222 2 2244555555545555555555555566777766 789999988654 3
Q ss_pred HHHhHHHHHHhhhh
Q psy7965 77 LTLGVLYVYCLGLS 90 (257)
Q Consensus 77 ~~~G~~~~~~~~~~ 90 (257)
..+|..+++.++..
T Consensus 332 ~~~g~~~g~~~~~~ 345 (377)
T PRK11102 332 FGIGAIVGALLSLA 345 (377)
T ss_pred HHHHHHHHHHHHhc
Confidence 55777777777654
No 211
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.18 E-value=0.00045 Score=58.66 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=70.4
Q ss_pred cccccCchhH-------HHHHHHHHHHHHHHHH-----Hh-----hhHHHHHHHHHHHhhhccccccccceeeeccCCcc
Q psy7965 2 FADKFGRKPV-------ILAFCFPYILSWLLIL-----FA-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS 64 (257)
Q Consensus 2 l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~ 64 (257)
+.||+|||+. +.++.++.+++.+..+ .+ .+.+.+...-++.|+|++...+....++.+..|++
T Consensus 332 l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~ 411 (489)
T PRK10207 332 IYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQH 411 (489)
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH
Confidence 4688988873 6677777776654321 21 24677778889999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHhHHHHHHhh
Q psy7965 65 IRGALGSFFQMFLTLGVLYVYCLG 88 (257)
Q Consensus 65 ~r~~~~~~~~~~~~~G~~~~~~~~ 88 (257)
.+|.+++++.....+|..++..++
T Consensus 412 ~~g~~~g~~~l~~~ig~~lg~~l~ 435 (489)
T PRK10207 412 LMGFILGMWFLTQAAAFLLGGYVA 435 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888887765
No 212
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.15 E-value=0.0011 Score=54.63 Aligned_cols=90 Identities=10% Similarity=0.078 Sum_probs=54.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccch-hhhhhHHHHHHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR-GALGSFFQMFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r-~~~~~~~~~~~~~G 80 (257)
+.||+|||+.+..+.++..++.+...+.++.......-.+.+.+.+...+.. ...+..|.++| +.+.++...+..+|
T Consensus 262 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~g 339 (392)
T PRK10473 262 ALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVA--MSQALGPFSLRAGVASSTLGIAQVCG 339 (392)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcccccHHHHHHHHHHHHH
Confidence 6799999999999999888888887776655544444444444443333322 22344454444 44555555555666
Q ss_pred HHHHHHhhhh-hHH
Q psy7965 81 VLYVYCLGLS-TYT 93 (257)
Q Consensus 81 ~~~~~~~~~~-~Wr 93 (257)
..+++.+... ++.
T Consensus 340 ~~~~~~l~~~~g~~ 353 (392)
T PRK10473 340 SSLWIWLAAVLGIS 353 (392)
T ss_pred HHHHHHHHHHhccc
Confidence 6666555544 443
No 213
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.13 E-value=0.00034 Score=58.58 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh-HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 32 IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG-VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 32 ~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G-~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+...+..+..|++.............|.+|+++|+.+.++.+....+| .+++|.+.+. ||...+.+..
T Consensus 345 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~ 419 (438)
T TIGR00712 345 PLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 419 (438)
T ss_pred hHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHH
Confidence 3333344445555432222222345679999999999999998776665 4567766654 6777665544
No 214
>PRK11043 putative transporter; Provisional
Probab=97.12 E-value=0.0011 Score=54.79 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=61.0
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHH---H--hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLIL---F--AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
+.||+|+|+.+....+..+++.+... . .++...+++...+.|++.+...+.......|..| ++|+++.++.+..
T Consensus 261 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~ 339 (401)
T PRK11043 261 ALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTL 339 (401)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHH
Confidence 46999999977666555544443322 1 2455556666778888899888888777777775 6799999999877
Q ss_pred HHHhHHHHHHhhhh
Q psy7965 77 LTLGVLYVYCLGLS 90 (257)
Q Consensus 77 ~~~G~~~~~~~~~~ 90 (257)
...+...++.+.+.
T Consensus 340 ~~~~~~~~~~~~g~ 353 (401)
T PRK11043 340 QLGLCFLASLLVSA 353 (401)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555443
No 215
>KOG0252|consensus
Probab=97.08 E-value=0.00076 Score=55.39 Aligned_cols=96 Identities=19% Similarity=0.090 Sum_probs=72.7
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhH----H----HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNI----Y----MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF 73 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~----~----~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~ 73 (257)
+.|+.|||++.+.+.+++.+..+..+...|. . .+-+..++.-+| -......+-+|.+|.+.|+..-++.
T Consensus 371 ~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIs 447 (538)
T KOG0252|consen 371 FIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGIS 447 (538)
T ss_pred EeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHH
Confidence 6899999999999999999999998887661 1 222333334343 3456678899999999999999999
Q ss_pred HHHHHHhHHHHHHhhhh----------hHHHHHhhcC
Q psy7965 74 QMFLTLGVLYVYCLGLS----------TYTVIAIGCL 100 (257)
Q Consensus 74 ~~~~~~G~~~~~~~~~~----------~Wr~~~~~~~ 100 (257)
.+..-+|.+++...-.. +-|.++++.+
T Consensus 448 AA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~ 484 (538)
T KOG0252|consen 448 AASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILA 484 (538)
T ss_pred HHhccchHHHHHHHhhHhhhccCCccccchHHHHHHH
Confidence 99999998888665433 4566666655
No 216
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.07 E-value=0.0022 Score=56.18 Aligned_cols=99 Identities=22% Similarity=0.328 Sum_probs=77.2
Q ss_pred cccc-cCchhHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHhhhccccccccceeeeccCCcc---chhhh
Q psy7965 2 FADK-FGRKPVILAFCFPYILSWLLILFAQ--------NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS---IRGAL 69 (257)
Q Consensus 2 l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~r~~~ 69 (257)
++|+ +||++.+.++.++..+|..+.+++. .....+++-.+.++|.|+.-+...+...|-++++ +|...
T Consensus 46 iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~ 125 (654)
T TIGR00926 46 IADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRF 125 (654)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHH
Confidence 4665 4999999999999999998887642 1234667788899999999999999999998764 36667
Q ss_pred hhHHHHHHHHhHHHHHHhhhh------------hHHHHHhhcC
Q psy7965 70 GSFFQMFLTLGVLYVYCLGLS------------TYTVIAIGCL 100 (257)
Q Consensus 70 ~~~~~~~~~~G~~~~~~~~~~------------~Wr~~~~~~~ 100 (257)
..++..+.++|.++++.+... +|...|.+.+
T Consensus 126 F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 126 FSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 777888888998888666443 3777777766
No 217
>PRK10133 L-fucose transporter; Provisional
Probab=97.07 E-value=0.00079 Score=56.42 Aligned_cols=96 Identities=14% Similarity=-0.012 Sum_probs=67.5
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.||+|||+++..+.++..++.++..+.++.. -+..-.+.|++.+..+|...+...|..|++ .+.+.++..... +|.
T Consensus 318 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~~~-~g~ 394 (438)
T PRK10133 318 LISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTI-IGG 394 (438)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhHHh-ccc
Confidence 67999999999998888877776666655542 245667899999999999999999998754 567777765443 444
Q ss_pred HHHHHhhhh-----h-HHHHHhhcC
Q psy7965 82 LYVYCLGLS-----T-YTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~-Wr~~~~~~~ 100 (257)
.+++.+.+. | -|..|++..
T Consensus 395 ~~~~~i~G~l~~~~g~~~~~~~v~~ 419 (438)
T PRK10133 395 GIVTPVMGFVSDAAGNIPTAELIPA 419 (438)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHH
Confidence 444444333 4 456565443
No 218
>KOG0254|consensus
Probab=97.07 E-value=0.0016 Score=55.82 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=59.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhH-------------HHHHHHHHHHhhhccccccccceeeeccCCccchhh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNI-------------YMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGA 68 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~ 68 (257)
+.||+|||+.++.+...+.++.++.+..... ..+...-+.......+..++...+.+|.+|.+.|++
T Consensus 352 lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~ 431 (513)
T KOG0254|consen 352 LVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSK 431 (513)
T ss_pred HHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhh
Confidence 6799999999999999999999988764221 222222233333344446677789999999999999
Q ss_pred hhhHHHHHHHHhHHHH
Q psy7965 69 LGSFFQMFLTLGVLYV 84 (257)
Q Consensus 69 ~~~~~~~~~~~G~~~~ 84 (257)
+.++..........+.
T Consensus 432 ~~s~~~~~n~~~~~~v 447 (513)
T KOG0254|consen 432 GASLAVAVNWLWNFLI 447 (513)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9998766665555444
No 219
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.0036 Score=51.03 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=75.8
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL 79 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 79 (257)
+++|| +.|+.+.....+..+..+...+.. +.+..++.-++-|+..+.........+++ ..+|.+..+.++.....++
T Consensus 269 rl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nl 346 (394)
T COG2814 269 RLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNL 346 (394)
T ss_pred hhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHH
Confidence 46899 999999998888888777766654 45566666677888777766666677777 5578899999999999999
Q ss_pred hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 80 GVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 80 G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
|..+|..+++. +++...++.+
T Consensus 347 gia~GA~lGG~v~~~~g~~~~~~~~a 372 (394)
T COG2814 347 GIALGAALGGLVLDALGYAATGWVGA 372 (394)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 99999888877 6666666555
No 220
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.00 E-value=1.9e-05 Score=66.27 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=62.0
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHH--H--hhh------HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLIL--F--AQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALG 70 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~ 70 (257)
++.||+|||+.++.+.++.++..+..+ . .++ ...+............+..+....+..|.+|.+.|++..
T Consensus 308 ~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~ 387 (451)
T PF00083_consen 308 FLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGI 387 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccc
Confidence 468999999999999998888877774 1 111 222222222211222233566678899999999999999
Q ss_pred hHHHHHHHHhHHHHHHhhhh
Q psy7965 71 SFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 71 ~~~~~~~~~G~~~~~~~~~~ 90 (257)
++......++.++++.+...
T Consensus 388 ~~~~~~~~i~~~i~~~~~~~ 407 (451)
T PF00083_consen 388 GLSYAVGRIGGFIIPFLFPY 407 (451)
T ss_pred cccccccccccccccccccc
Confidence 99888878888777766544
No 221
>KOG3764|consensus
Probab=96.98 E-value=0.00086 Score=54.09 Aligned_cols=99 Identities=22% Similarity=0.155 Sum_probs=77.4
Q ss_pred cccccC--chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCcc------chhhhhhHH
Q psy7965 2 FADKFG--RKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS------IRGALGSFF 73 (257)
Q Consensus 2 l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~------~r~~~~~~~ 73 (257)
++||++ |...-..+.+..++.+....+++++.++.+-+...|++.+...+.......+....+ .-|...++.
T Consensus 329 la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIa 408 (464)
T KOG3764|consen 329 LADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIA 408 (464)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHH
Confidence 689999 655555677777777788888999999999999999988888777666555555433 346888899
Q ss_pred HHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 74 QMFLTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 74 ~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
+.++++|..++|.+++. |.+|...+.+
T Consensus 409 d~a~sla~a~GP~~gg~iv~~iGF~wl~~iig 440 (464)
T KOG3764|consen 409 DAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIG 440 (464)
T ss_pred HHHHHHhhhccccccchheeehhHHHHHHHHH
Confidence 99999999999999988 6676655544
No 222
>KOG0255|consensus
Probab=96.97 E-value=0.0011 Score=56.83 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=76.0
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIY---MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
+.|++|||.....+..+..++.+..++..+.. ...+...+..++.+..+.....+.+|.+|...|..+.+.......
T Consensus 373 ~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~ 452 (521)
T KOG0255|consen 373 LLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAAR 452 (521)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999876543 356666666677777777779999999999999999999999999
Q ss_pred HhHHHHHHhhhh
Q psy7965 79 LGVLYVYCLGLS 90 (257)
Q Consensus 79 ~G~~~~~~~~~~ 90 (257)
+|.+++|.+...
T Consensus 453 ~~~i~ap~~~~~ 464 (521)
T KOG0255|consen 453 LGSILAPLFPLL 464 (521)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 223
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.88 E-value=0.0019 Score=54.43 Aligned_cols=89 Identities=8% Similarity=-0.011 Sum_probs=73.4
Q ss_pred cccccC-chhHHHHHHHHHHHHHHHHHHhhh---------------------HHHHHHHHHHHhhhccccccccceeeec
Q psy7965 2 FADKFG-RKPVILAFCFPYILSWLLILFAQN---------------------IYMLFVARFIAGVGTGGLCAIIPMFIGE 59 (257)
Q Consensus 2 l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~r~l~G~~~g~~~~~~~~~i~e 59 (257)
+.+|+| ||++..++.++.+++.+...+.++ .+..++...+.|+..+..+...++++++
T Consensus 328 l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~ 407 (477)
T TIGR01301 328 LCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASI 407 (477)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 467898 577779998888888877776443 3677788899999999999999999999
Q ss_pred cCCc--cchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 60 IAES--SIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 60 ~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
..++ ++.|..+++++....+.+++..+..+.
T Consensus 408 ~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 408 RSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred HccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 9995 455999999999999999988875544
No 224
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.85 E-value=0.0011 Score=55.15 Aligned_cols=87 Identities=10% Similarity=-0.072 Sum_probs=66.0
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
++.||+++|+++.++.++..+..++..+.++... ..+-.+.|++.+..+|.......+..+++.+.....+.. + .+|
T Consensus 291 ~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~G 367 (410)
T TIGR00885 291 WLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIG 367 (410)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-Hhc
Confidence 3679999999999999999998888888776544 566778888899999999999999998766433333333 2 377
Q ss_pred HHHHHHhhhh
Q psy7965 81 VLYVYCLGLS 90 (257)
Q Consensus 81 ~~~~~~~~~~ 90 (257)
..+.|.+.+.
T Consensus 368 ga~~p~l~G~ 377 (410)
T TIGR00885 368 GGIVPPLQGF 377 (410)
T ss_pred cchHHHHHHH
Confidence 7777766543
No 225
>KOG3098|consensus
Probab=96.84 E-value=0.029 Score=46.92 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=72.4
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.|+.|.|..+.++..+.....+..-+ +|-+.+++.-.+.|+|.+..+..-..+++|+.++|++.+..++.-.....+.
T Consensus 73 iv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~l 151 (461)
T KOG3098|consen 73 IVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSL 151 (461)
T ss_pred HHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHH
Confidence 458899999999999999887776655 5677888999999999999999999999999999999999998766666666
Q ss_pred HHHHHh
Q psy7965 82 LYVYCL 87 (257)
Q Consensus 82 ~~~~~~ 87 (257)
++|...
T Consensus 152 i~Ggi~ 157 (461)
T KOG3098|consen 152 IIGGII 157 (461)
T ss_pred HhhhHh
Confidence 666544
No 226
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.82 E-value=0.00048 Score=58.20 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=73.3
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965 3 ADKFGRKPVILAFCFPYILSWLLILF----------AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 3 ~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
.+|++.|+++.++.++.+++.+.... .++.+..+..-.+.+++.+........++.+..|++++|...++
T Consensus 312 ~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al 391 (468)
T TIGR00788 312 LKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFAL 391 (468)
T ss_pred HhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHH
Confidence 47899999999999999888755431 13334556667888999899899999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhhh
Q psy7965 73 FQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 73 ~~~~~~~G~~~~~~~~~~ 90 (257)
.+...++|..+++.+++.
T Consensus 392 ~~s~~~lg~~v~~~~gg~ 409 (468)
T TIGR00788 392 LASILHLGSSVSGFLGVL 409 (468)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999987765
No 227
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.72 E-value=0.0028 Score=51.87 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHHHHHh--h-------hHHHHHHHHHHHhhhccccccccceeeeccCCcc---chhhhhhHHHHHH
Q psy7965 10 PVILAFCFPYILSWLLILFA--Q-------NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS---IRGALGSFFQMFL 77 (257)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~--~-------~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~ 77 (257)
+++.++.++..+|.++..++ + +...++++-.+.++|.|+.-+....+.+|-++++ +|.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57788999999999885543 2 1357899999999999999999999999999876 4666777889999
Q ss_pred HHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 78 TLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 78 ~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
++|.+++.....+ +|.+.|.+.+
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~ 109 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPA 109 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHH
Confidence 9999999887766 7988888876
No 228
>KOG0637|consensus
Probab=96.60 E-value=0.0004 Score=56.82 Aligned_cols=91 Identities=20% Similarity=0.376 Sum_probs=71.7
Q ss_pred ccCchhHHHH-HHHHHHHHHHHHHHhhhH-----------------HHHHHHHHHHhhhccccccccceeeeccCCccch
Q psy7965 5 KFGRKPVILA-FCFPYILSWLLILFAQNI-----------------YMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR 66 (257)
Q Consensus 5 r~Grr~~l~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r 66 (257)
||||||-++. +.+...++.++.++++++ ..++++.-+.-++.......+-++++|....++|
T Consensus 97 r~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~ 176 (498)
T KOG0637|consen 97 RYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK 176 (498)
T ss_pred ccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh
Confidence 6899887776 566667777777776654 3456666677778888889999999999988877
Q ss_pred hh-hhhHHHHHHHHhHHHHHHhhhh-hHHHH
Q psy7965 67 GA-LGSFFQMFLTLGVLYVYCLGLS-TYTVI 95 (257)
Q Consensus 67 ~~-~~~~~~~~~~~G~~~~~~~~~~-~Wr~~ 95 (257)
.+ +.+.+.....+|..+|..++.+ +|+-.
T Consensus 177 ~~~Ans~f~~f~avGnvLGY~~g~y~~~~~~ 207 (498)
T KOG0637|consen 177 KTRANSVFSFFMAVGNVLGYALGSYLGLYKI 207 (498)
T ss_pred hhccchhHHHHHHhcceeeeecccccCceEE
Confidence 77 9999999999999999999866 66543
No 229
>KOG4686|consensus
Probab=96.58 E-value=0.0047 Score=47.90 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=66.7
Q ss_pred cccccCchhHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILS-WLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
++||+||+...+.+..+..+. -....+ +.+.=.+...+.|+.........+..++-..|.++.|++.+..|...++|
T Consensus 323 i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLg 400 (459)
T KOG4686|consen 323 ISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLG 400 (459)
T ss_pred hHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhh
Confidence 689999999988866555443 333333 23333456667888777766667788888999999999999999999999
Q ss_pred HHHHHHhhhh
Q psy7965 81 VLYVYCLGLS 90 (257)
Q Consensus 81 ~~~~~~~~~~ 90 (257)
-.+.+++++.
T Consensus 401 la~i~Iiag~ 410 (459)
T KOG4686|consen 401 LAFIPIIAGF 410 (459)
T ss_pred hhHHhhhhhe
Confidence 9999999877
No 230
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.58 E-value=0.0036 Score=51.60 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
+.+.+..+.++.|++.+...+....+..|..| ++++...++.+...++|..+++.+++.
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~ 356 (394)
T PRK11652 298 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAM 356 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788899999999999999999999887 578999999999999999999988776
No 231
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.49 E-value=0.0073 Score=49.44 Aligned_cols=65 Identities=25% Similarity=0.233 Sum_probs=59.0
Q ss_pred HHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 26 ILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 26 ~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
.-+.++.+..++.-+..|+..|..+......+.|-.|+++|..+++...++.+.|..++.+++..
T Consensus 329 ~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 329 YRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33467889999999999999999999999999999999999999999999999999999988765
No 232
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.37 E-value=0.0011 Score=54.42 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=38.9
Q ss_pred cccccCchhHHHHHHHHH--HHHHHHH-HHhh----hH-HHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHH
Q psy7965 2 FADKFGRKPVILAFCFPY--ILSWLLI-LFAQ----NI-YMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF 73 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~--~~~~~~~-~~~~----~~-~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~ 73 (257)
++||+|.||-++...... ..+.... .+.| |. ...+++-...|+...+..++.-+++.++. ++.+.=.|-.
T Consensus 66 i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~ 143 (412)
T PF01306_consen 66 ISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRA 143 (412)
T ss_dssp HHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHH
T ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchH
Confidence 589999777655443322 2233222 2222 22 12223323334444444444444433332 2223333444
Q ss_pred HHHHHHhHHHHHHhhhh
Q psy7965 74 QMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 74 ~~~~~~G~~~~~~~~~~ 90 (257)
-...++|.+++..+++.
T Consensus 144 R~wGSig~ai~s~~~G~ 160 (412)
T PF01306_consen 144 RMWGSIGFAIASLLAGI 160 (412)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhhe
Confidence 55666666666666655
No 233
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.06 E-value=0.025 Score=46.18 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=73.8
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965 3 ADKFGRKPVILAFCFPYILSWLLILF---AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL 79 (257)
Q Consensus 3 ~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 79 (257)
..|.++|+.-.+++....++..+..+ ..+.+.+...-++.|++.|.........+.|...+++-|..++.+...+.+
T Consensus 269 ~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~ 348 (403)
T PF03209_consen 269 SRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAI 348 (403)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHH
Confidence 45788888888887777777655544 356888999999999999999999999999999999999999999998888
Q ss_pred hHHHHHHhhhh
Q psy7965 80 GVLYVYCLGLS 90 (257)
Q Consensus 80 G~~~~~~~~~~ 90 (257)
+.-++..+++.
T Consensus 349 A~Glg~~~GG~ 359 (403)
T PF03209_consen 349 ARGLGTFLGGA 359 (403)
T ss_pred HHHHHHHHHHH
Confidence 88777777665
No 234
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=96.03 E-value=0.015 Score=49.06 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh--------hHHHHHhhcC
Q psy7965 31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS--------TYTVIAIGCL 100 (257)
Q Consensus 31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--------~Wr~~~~~~~ 100 (257)
+....+++-.+.+.+.+...+.......|..|+ .+|.+.++.+....+|.+++|.+.+. +|+..|.+.+
T Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~ 436 (465)
T TIGR00894 360 AFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMA 436 (465)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHH
Confidence 334444444555555555555555556677765 89999999999999999999877654 3777777665
No 235
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=95.73 E-value=0.0069 Score=49.44 Aligned_cols=100 Identities=20% Similarity=0.153 Sum_probs=72.0
Q ss_pred Cccccc--CchhHHHH-HHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965 1 PFADKF--GRKPVILA-FCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM 75 (257)
Q Consensus 1 ~l~dr~--Grr~~l~~-~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 75 (257)
|++||+ |||...-+ ++++..++.+..-.++ |+....++-++.|+..-+..-.......|..|++--|.+.++...
T Consensus 310 wlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Gl 389 (448)
T COG2271 310 WLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGL 389 (448)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhh
Confidence 478987 67765444 5555555555555555 458888888889987766666667778999999999999999988
Q ss_pred HHHH-hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 76 FLTL-GVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 76 ~~~~-G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
+..+ |...+...-+. ||...|++..
T Consensus 390 f~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~ 420 (448)
T COG2271 390 FAYLIGAALAGLPLGYIADTWGWDGGFIVLS 420 (448)
T ss_pred HHHHhhHHhcCCcceeeEecCCCcchHHHHH
Confidence 8877 76666554443 8888776655
No 236
>KOG3810|consensus
Probab=95.52 E-value=0.021 Score=45.49 Aligned_cols=87 Identities=15% Similarity=0.271 Sum_probs=66.0
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHH
Q psy7965 3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVL 82 (257)
Q Consensus 3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 82 (257)
.|-.--|++++.-.+-......+..+.++.+.+=+.-++.|...+. ...-++++-+..+++++.++.+...+..-.|..
T Consensus 66 TD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~ 144 (433)
T KOG3810|consen 66 TDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKF 144 (433)
T ss_pred hhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhH
Confidence 4555557777776666666677777888888888888888887665 456678999999999999999987777777766
Q ss_pred HHHHhhhh
Q psy7965 83 YVYCLGLS 90 (257)
Q Consensus 83 ~~~~~~~~ 90 (257)
.+..++-.
T Consensus 145 ~g~vlaQl 152 (433)
T KOG3810|consen 145 VGSVLAQL 152 (433)
T ss_pred HHhHHHHH
Confidence 66666544
No 237
>KOG2816|consensus
Probab=95.00 E-value=0.042 Score=46.27 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=76.3
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHH
Q psy7965 3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVL 82 (257)
Q Consensus 3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 82 (257)
...+|-|+++..++..-.+.....+++++.|+++....+.++. +...+...+.++.+..++++|++.++......+..+
T Consensus 302 ~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~ 380 (463)
T KOG2816|consen 302 SSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGV 380 (463)
T ss_pred HHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhh
Confidence 4567888889999999999999999999999999998888774 556888889999999999999999999999999888
Q ss_pred HHHHhhhh
Q psy7965 83 YVYCLGLS 90 (257)
Q Consensus 83 ~~~~~~~~ 90 (257)
+++.+-..
T Consensus 381 ~~~~~~~~ 388 (463)
T KOG2816|consen 381 VSPALYGN 388 (463)
T ss_pred hhHHHHHH
Confidence 88877654
No 238
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=94.92 E-value=0.13 Score=43.25 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=33.3
Q ss_pred HHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHh
Q psy7965 41 IAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCL 87 (257)
Q Consensus 41 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 87 (257)
+.=+-++.=..+.-.+.-.+..+++++.+.....+|.+.|.+++..+
T Consensus 127 ~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 127 ILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTV 173 (544)
T ss_pred HHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHH
Confidence 33333444444555566667788999999999999999998887555
No 239
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=94.67 E-value=0.079 Score=42.65 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=66.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccch-hhhhhHHHHHHHHhHHH
Q psy7965 5 KFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR-GALGSFFQMFLTLGVLY 83 (257)
Q Consensus 5 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r-~~~~~~~~~~~~~G~~~ 83 (257)
+-.+|+.......++.+|...+.+.+....++. -++.|+|.|..++....++.+.++..++ +.-.+..|....+=..+
T Consensus 270 ~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~ 348 (395)
T COG2807 270 SKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAF 348 (395)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhh
Confidence 447888888888888888888877766544444 4899999999999999999988765443 33444444444443456
Q ss_pred HHHhhhh------hHHHHHhhcC
Q psy7965 84 VYCLGLS------TYTVIAIGCL 100 (257)
Q Consensus 84 ~~~~~~~------~Wr~~~~~~~ 100 (257)
+|.+.+. +|+.......
T Consensus 349 GP~l~G~lhDa~gsw~~~~~~l~ 371 (395)
T COG2807 349 GPWLFGFLHDATGSWSAPLVLLA 371 (395)
T ss_pred hhhhHhHHHHhcCChHHHHHHHH
Confidence 6766665 7887665544
No 240
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=94.63 E-value=0.22 Score=42.08 Aligned_cols=89 Identities=9% Similarity=0.135 Sum_probs=63.8
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh--h-----------------------------hHHHHHHHHHHHhhhccccc
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA--Q-----------------------------NIYMLFVARFIAGVGTGGLC 50 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~-----------------------------~~~~~~~~r~l~G~~~g~~~ 50 (257)
+++|++|++.+-+....+...-.+.++. + +.|...+.-....+-.....
T Consensus 67 l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vv 146 (472)
T TIGR00769 67 LSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVL 146 (472)
T ss_pred HHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 6789999999888776666666665553 1 12222233334444444444
Q ss_pred c-ccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 51 A-IIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 51 ~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
+ .-+.++.|.++.+|-.+..+++..+.++|.++++.+...
T Consensus 147 S~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 147 SLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 668899999999999999999999999999999877544
No 241
>KOG3574|consensus
Probab=94.22 E-value=0.25 Score=40.30 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=58.0
Q ss_pred cccCchhHHHH-HHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhh
Q psy7965 4 DKFGRKPVILA-FCFPYILSWLLILF-----------AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGS 71 (257)
Q Consensus 4 dr~Grr~~l~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~ 71 (257)
+|+||||.-++ +..+.+..+.+.+. .++...+....++.-+.++.-....-.+.-.+..+++-|-+..
T Consensus 93 k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST 172 (510)
T KOG3574|consen 93 KRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYAST 172 (510)
T ss_pred HhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhH
Confidence 39999998665 55555555544443 2334444445556666666666666667777888999999999
Q ss_pred HHHHHHHHhHHHHHHh
Q psy7965 72 FFQMFLTLGVLYVYCL 87 (257)
Q Consensus 72 ~~~~~~~~G~~~~~~~ 87 (257)
...++...|.+++..+
T Consensus 173 ~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 173 CQSVGQTAGYFLGNVV 188 (510)
T ss_pred HHHHHHhhhHHhhcce
Confidence 9999999999888655
No 242
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=94.07 E-value=3 Score=35.09 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=13.2
Q ss_pred cccccCchhHHHHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPY 19 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~ 19 (257)
+.||..|.++...+.+.-
T Consensus 61 ~iD~~~Rl~~~~~~l~~Q 78 (432)
T PF06963_consen 61 WIDRSPRLKVIRTSLVVQ 78 (432)
T ss_pred HHhCCcchhhHHHHHHHH
Confidence 469999999877665444
No 243
>PTZ00207 hypothetical protein; Provisional
Probab=93.98 E-value=0.092 Score=45.66 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=62.8
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHH
Q psy7965 5 KFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYV 84 (257)
Q Consensus 5 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~ 84 (257)
|+-|--.+.+..+ +.++.++..++-....+++.-++.|++.|..++.....++|.|- ++-|+-..+......+|.++-
T Consensus 426 r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~ 503 (591)
T PTZ00207 426 RVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFL 503 (591)
T ss_pred ccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHH
Confidence 3444444555555 77777777776444789999999999999999999999999999 888999999999999988765
No 244
>KOG2615|consensus
Probab=93.92 E-value=0.11 Score=42.28 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=67.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHh
Q psy7965 8 RKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCL 87 (257)
Q Consensus 8 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 87 (257)
-|-.+..++.+..=..++.+.++....+..+-.+..+..+...+....++....|.++||..+|+......++-++||++
T Consensus 328 ~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv 407 (451)
T KOG2615|consen 328 IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLV 407 (451)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhh
Confidence 33444445554444445555667778888888889998888889999999999999999999999999999999999999
Q ss_pred hhh
Q psy7965 88 GLS 90 (257)
Q Consensus 88 ~~~ 90 (257)
++.
T Consensus 408 ~g~ 410 (451)
T KOG2615|consen 408 SGV 410 (451)
T ss_pred hhe
Confidence 855
No 245
>KOG3098|consensus
Probab=93.80 E-value=0.2 Score=42.11 Aligned_cols=85 Identities=20% Similarity=0.385 Sum_probs=67.5
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHh------------------hhHHHHHHHHHHHhhhccccccccceeeeccCCcc
Q psy7965 3 ADKFGRKPVILAFCFPYILSWLLILFA------------------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS 64 (257)
Q Consensus 3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~ 64 (257)
.|++||++.+.++.++..++.++.-.+ +++...++.-++.|++-+......+.++++.. ++
T Consensus 306 ir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~ 384 (461)
T KOG3098|consen 306 IRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PD 384 (461)
T ss_pred hhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cC
Confidence 478999999999999998888887662 13557777889999999999999999999999 67
Q ss_pred chhhhhhHHHHHHHHhHHHHHHhh
Q psy7965 65 IRGALGSFFQMFLTLGVLYVYCLG 88 (257)
Q Consensus 65 ~r~~~~~~~~~~~~~G~~~~~~~~ 88 (257)
+|..+.+++-.-..++..++....
T Consensus 385 ~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 385 DRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhh
Confidence 788888887666666665544443
No 246
>KOG3880|consensus
Probab=93.62 E-value=0.17 Score=39.96 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 17 FPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
.++.+...+..+.++++..++.-+..|+-.|..+...+--+.+-.++++|-.+++....+-++|..++.+++..
T Consensus 327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP 400 (409)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence 34444555566688999999999999999999999888888888999999999999999999999999888755
No 247
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=93.36 E-value=0.23 Score=42.32 Aligned_cols=77 Identities=6% Similarity=0.071 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH-HHHhH
Q psy7965 12 ILAFCFPYILSWLLILFA---------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF-LTLGV 81 (257)
Q Consensus 12 l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~-~~~G~ 81 (257)
+.+++++.+++.++..++ .+.+.++..-++.++|+-...|+..+.+++..|++.||..++.+... ..+|.
T Consensus 348 fa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~ 427 (493)
T PRK15462 348 FALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIAN 427 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 566777777776665441 24567888889999999999999999999999999999999998653 35666
Q ss_pred HHHHHhh
Q psy7965 82 LYVYCLG 88 (257)
Q Consensus 82 ~~~~~~~ 88 (257)
.++..++
T Consensus 428 ~~~g~~~ 434 (493)
T PRK15462 428 YLAGVIA 434 (493)
T ss_pred HHHHHHH
Confidence 6655443
No 248
>KOG4332|consensus
Probab=92.23 E-value=0.67 Score=36.11 Aligned_cols=70 Identities=30% Similarity=0.504 Sum_probs=49.2
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccce-eeeccCCccchhhhhhHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPM-FIGEIAESSIRGALGSFFQ 74 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~-~i~e~~~~~~r~~~~~~~~ 74 (257)
++||-|||+.-+.-.+...++++ +-.+++|-.++++|.+.|++.+..+..--+ +++|+- |+|+.-.-+..
T Consensus 95 LaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls 165 (454)
T KOG4332|consen 95 LADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLS 165 (454)
T ss_pred HHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhh
Confidence 68999999976655555554443 345788999999999999998887776644 466765 45555444433
No 249
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=91.33 E-value=0.049 Score=44.74 Aligned_cols=80 Identities=11% Similarity=-0.020 Sum_probs=57.3
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHH
Q psy7965 3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVL 82 (257)
Q Consensus 3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 82 (257)
.+|..-+.-...+.++..++.++.++++|.+.=+++-.+.+++.|........+. ..+++ ...+.+.+|.+.+.+
T Consensus 83 i~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~----~~l~~wssGTG~aGl 157 (402)
T PF02487_consen 83 IHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGK----SSLSAWSSGTGGAGL 157 (402)
T ss_pred hhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCc----cccccccCCcChhhH
Confidence 3455444445667778888999999999999888999999999988877777754 35543 345666666666666
Q ss_pred HHHHh
Q psy7965 83 YVYCL 87 (257)
Q Consensus 83 ~~~~~ 87 (257)
+|+..
T Consensus 158 ~Ga~~ 162 (402)
T PF02487_consen 158 VGALY 162 (402)
T ss_pred HHHHH
Confidence 66554
No 250
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=91.16 E-value=1.2 Score=37.23 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
++...+++.++.++|.+...+...... ..-....+|++.++.+.....+...++....+
T Consensus 311 ~~~~~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~ 369 (413)
T PRK15403 311 VWLWSVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRW 369 (413)
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456788888898888877776322 12222346888887776666666665555544
No 251
>KOG1237|consensus
Probab=86.54 E-value=1.7 Score=37.90 Aligned_cols=99 Identities=17% Similarity=0.227 Sum_probs=72.5
Q ss_pred ccccc-CchhHHHHHHHHHHHHHHHHHHhhh-------------------------HHHHHHHHHHHhhhccccccccce
Q psy7965 2 FADKF-GRKPVILAFCFPYILSWLLILFAQN-------------------------IYMLFVARFIAGVGTGGLCAIIPM 55 (257)
Q Consensus 2 l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~r~l~G~~~g~~~~~~~~ 55 (257)
++|-| ||-+++.++.++..+|..+..++.. ...+..+..+..+|.|+.-+....
T Consensus 96 laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~ 175 (571)
T KOG1237|consen 96 LADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLA 175 (571)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchh
Confidence 56766 9999999998888888665554221 125666777888899999999999
Q ss_pred eeeccCC---c-cchh--hhhhHHHHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 56 FIGEIAE---S-SIRG--ALGSFFQMFLTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 56 ~i~e~~~---~-~~r~--~~~~~~~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
+-+|-++ + +++. ..+.++....+.|.+++..+-.+ +|.+-|.+..
T Consensus 176 fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~ 231 (571)
T KOG1237|consen 176 FGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPT 231 (571)
T ss_pred hcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHH
Confidence 9999998 3 2223 56777888888888877666544 7877665554
No 252
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=86.42 E-value=2.5 Score=37.07 Aligned_cols=85 Identities=13% Similarity=0.038 Sum_probs=61.5
Q ss_pred ccCchh-HHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 5 KFGRKP-VILAFCFPYILSWLLILF--AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 5 r~Grr~-~l~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+.+|-| .++++.+++.++...++. .+|....+..-++.|++.|...........-..|.+.-+.+.++....-.+|.
T Consensus 375 ~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GG 454 (599)
T PF06609_consen 375 KIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGG 454 (599)
T ss_pred HccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhh
Confidence 344444 445666666655444443 34555556777899999999888888888888999999999999888888888
Q ss_pred HHHHHhhh
Q psy7965 82 LYVYCLGL 89 (257)
Q Consensus 82 ~~~~~~~~ 89 (257)
.++..+..
T Consensus 455 sIg~aIy~ 462 (599)
T PF06609_consen 455 SIGYAIYN 462 (599)
T ss_pred HHHHHHHH
Confidence 77776543
No 253
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=85.96 E-value=6.3 Score=30.55 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=26.4
Q ss_pred cchhhhhhHHHHHHHHhHHHH--HHhhhh--------hHHHHHhhcC
Q psy7965 64 SIRGALGSFFQMFLTLGVLYV--YCLGLS--------TYTVIAIGCL 100 (257)
Q Consensus 64 ~~r~~~~~~~~~~~~~G~~~~--~~~~~~--------~Wr~~~~~~~ 100 (257)
++|+..+.+-..+.++|.++. |.+-.. +|++++.+.+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~ 48 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFI 48 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHH
Confidence 567777788788888888765 333321 8999887776
No 254
>KOG2532|consensus
Probab=83.94 E-value=1.5 Score=37.21 Aligned_cols=89 Identities=13% Similarity=0.061 Sum_probs=55.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhh--H----HHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 7 GRKPVILAFCFPYILSWLLILFAQN--I----YMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 7 Grr~~l~~~~~~~~~~~~~~~~~~~--~----~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
-||..-.++....++..+..++.++ . ..+.+.-.+.|+..++.. .-..|. .+++-+..+++.+....+.
T Consensus 331 ~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~-apq~a~~l~g~~~~~~~~~ 405 (466)
T KOG2532|consen 331 VRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFY----KNHQDI-APQHAGFVMGIINFVGALA 405 (466)
T ss_pred HHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhH----hhhhhc-cchHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666552 1 122222233333333322 222233 4567799999999999999
Q ss_pred HHHHHHhhhh--------hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS--------TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~--------~Wr~~~~~~~ 100 (257)
.+++|.+.+. .||.+|.+.+
T Consensus 406 ~~~~P~~vg~~~~~~t~~eW~~VF~i~a 433 (466)
T KOG2532|consen 406 GFIAPLLVGIIVTDNTREEWRIVFLIAA 433 (466)
T ss_pred HHHHHHheeeEeCCCCHHHHHHHHHHHH
Confidence 9999988766 7999998877
No 255
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=83.43 E-value=15 Score=31.65 Aligned_cols=89 Identities=13% Similarity=0.222 Sum_probs=56.8
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHh--hh-----------------------------HHHHHHHHHHHhhhccccc
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFA--QN-----------------------------IYMLFVARFIAGVGTGGLC 50 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~-----------------------------~~~~~~~r~l~G~~~g~~~ 50 (257)
++|+++|.+++-+....+...-.+.++. |+ .|.+.+.-.+.-+-.....
T Consensus 82 l~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvl 161 (491)
T PF03219_consen 82 LSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVL 161 (491)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999998877666665555555541 11 0111112222222222222
Q ss_pred c-ccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 51 A-IIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 51 ~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
+ .-+.+..|.++.+|-.+..+++..+.++|.+++..+...
T Consensus 162 SlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~ 202 (491)
T PF03219_consen 162 SLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSY 202 (491)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 347789999999999999999999999999887766544
No 256
>KOG2533|consensus
Probab=82.90 E-value=1 Score=38.48 Aligned_cols=96 Identities=15% Similarity=0.025 Sum_probs=55.2
Q ss_pred Ccccc----cCchhHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccch-hhhhhHHH
Q psy7965 1 PFADK----FGRKPVILAFCFPYILSW-LLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR-GALGSFFQ 74 (257)
Q Consensus 1 ~l~dr----~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r-~~~~~~~~ 74 (257)
+++|| ..+|........+..+.. .......+.......-+....+.+...+.......+...++.| -...+...
T Consensus 331 ~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i 410 (495)
T KOG2533|consen 331 YLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAII 410 (495)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhh
Confidence 36899 667777666666655544 4444443344444444455555666667777777777765544 44444555
Q ss_pred HHHHHhHHHHHHhhhh------hHHHHH
Q psy7965 75 MFLTLGVLYVYCLGLS------TYTVIA 96 (257)
Q Consensus 75 ~~~~~G~~~~~~~~~~------~Wr~~~ 96 (257)
.+.+.+.++++.+-.. .|...|
T Consensus 411 ~~~~s~~~~~~~~~~~~~ap~y~~~~~f 438 (495)
T KOG2533|consen 411 DGTGSAGAISGQLFRSLDAPRYGWGAVF 438 (495)
T ss_pred cchhHHHHhhhhhcccccCcchhhhhHH
Confidence 5555555555544322 566665
No 257
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=79.23 E-value=2.6 Score=35.53 Aligned_cols=60 Identities=15% Similarity=0.245 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhh
Q psy7965 30 QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGL 89 (257)
Q Consensus 30 ~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 89 (257)
++-+..++..++.|+..|-..+....+..+..++++|..+..+...+..+|..+|..++.
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777999999999999999999999999999999999999999999988887753
No 258
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=77.03 E-value=11 Score=26.65 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHH
Q psy7965 30 QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYV 84 (257)
Q Consensus 30 ~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~ 84 (257)
+++..++..-.+.|+|.-+ +.+.+++--..+++.|...|+-..-.+++-+.-
T Consensus 95 P~~~~~~~S~~~Fg~gllG---isYGilSaSWD~~r~GSllG~~e~~~N~~r~~~ 146 (153)
T PF11947_consen 95 PPWAVLLVSLVFFGLGLLG---ISYGILSASWDPEREGSLLGWEEFKRNWGRMWE 146 (153)
T ss_pred CchHHHHHHHHHHHHHHHh---hhhhhcccccCCCCCCCcccHHHHHHhHHHHHH
Confidence 4556666666655554433 344455666677888999999888877776543
No 259
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=75.12 E-value=3.2 Score=34.29 Aligned_cols=85 Identities=12% Similarity=0.073 Sum_probs=61.9
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHH
Q psy7965 3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVL 82 (257)
Q Consensus 3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 82 (257)
..|+-..|.+.+..++..+.++..+++++...+ .+-++.|+..+..+|...+.-.+..| ++-....++. +...+|..
T Consensus 296 m~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l-~maivGGA 372 (422)
T COG0738 296 MSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLL-VMAIVGGA 372 (422)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceee-eeheecch
Confidence 457778889999988888888888888885544 34567888899999999999999998 4434444443 34455666
Q ss_pred HHHHhhhh
Q psy7965 83 YVYCLGLS 90 (257)
Q Consensus 83 ~~~~~~~~ 90 (257)
+.|.+-++
T Consensus 373 iiP~l~G~ 380 (422)
T COG0738 373 IIPPLQGV 380 (422)
T ss_pred HHHHHHHH
Confidence 66655554
No 260
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=74.04 E-value=32 Score=29.13 Aligned_cols=52 Identities=13% Similarity=-0.019 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHh
Q psy7965 31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCL 87 (257)
Q Consensus 31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 87 (257)
.++..++.-++.|++.+........+.+ .+|++ .+..+..|.+++++++.++
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence 4666777778889998888888877666 55543 3444455555555544443
No 261
>KOG1479|consensus
Probab=73.96 E-value=10 Score=31.45 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhh
Q psy7965 30 QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLG 88 (257)
Q Consensus 30 ~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 88 (257)
.+-+.+++...+.|+..|-.......+..+-.|++++-.+..+.......|...|..++
T Consensus 341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34567788889999999999999999999999999999999998888888888887776
No 262
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=73.62 E-value=6.5 Score=33.48 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 12 ILAFCFPYILSWLLILFA----------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 12 l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
+-+++.+.+.+-++.... .+.+.++..-+++++|+=...|+..+.++...|+.-.+.+++.+......|.
T Consensus 364 FalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~ 443 (498)
T COG3104 364 FALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQ 443 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 445666666665555443 2467888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q psy7965 82 LYVYCLGL 89 (257)
Q Consensus 82 ~~~~~~~~ 89 (257)
.++..++.
T Consensus 444 ~l~g~va~ 451 (498)
T COG3104 444 TLGGQVAG 451 (498)
T ss_pred Hhhceecc
Confidence 88877766
No 263
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=73.50 E-value=12 Score=31.57 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=60.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHH------hh----hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILF------AQ----NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGS 71 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~----~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~ 71 (257)
+.+|+|..+.-.++...-.+.-.++.. ++ +...++.+-.+.=+|.=+..-...-++.|..|+++||...+
T Consensus 316 l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~g 395 (432)
T PF06963_consen 316 LMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSG 395 (432)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHH
Confidence 457888888877765544333322221 22 34455555556556666677788889999999999999999
Q ss_pred HHHHHHHHhHHHHHHhhhh
Q psy7965 72 FFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 72 ~~~~~~~~G~~~~~~~~~~ 90 (257)
.-.+..++--++...+...
T Consensus 396 vq~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 396 VQNSLQSLFELLSFVLTII 414 (432)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9888888877776665533
No 264
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=71.22 E-value=1.1 Score=35.75 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=3.8
Q ss_pred hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhh
Q psy7965 30 QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLG 88 (257)
Q Consensus 30 ~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 88 (257)
+|-+.+++..++.|+..|-..+....+..+..++++|..+..+.......|..+|..++
T Consensus 246 ~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 246 NSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp ---------------------HHHH----------------------------------
T ss_pred cchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778889999999999999999999999999999999998888888888887765
No 265
>KOG3097|consensus
Probab=65.98 E-value=12 Score=30.25 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=46.3
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCc
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES 63 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~ 63 (257)
+.+++|-|.++.+++......-... +-+.+..+.-.-.+.|++.+..+.....|++++-..
T Consensus 81 ~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ 141 (390)
T KOG3097|consen 81 LIRFLGTKWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQN 141 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccccCcceecHHHHH
Confidence 3567888988888776665432222 235688888899999999999999999999888643
No 266
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=57.54 E-value=16 Score=22.89 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=25.8
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy7965 3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYML 35 (257)
Q Consensus 3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 35 (257)
.++..+++.+..+.+...+..+.+++.++.+..
T Consensus 51 ~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 51 PRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 355566788888999999999999988776543
No 267
>COG1288 Predicted membrane protein [Function unknown]
Probab=51.66 E-value=26 Score=29.44 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=13.7
Q ss_pred CchhHHH-HHHHHHHHHHHHHHHhh
Q psy7965 7 GRKPVIL-AFCFPYILSWLLILFAQ 30 (257)
Q Consensus 7 Grr~~l~-~~~~~~~~~~~~~~~~~ 30 (257)
||..+++ +..++++++...++...
T Consensus 132 G~e~llI~~l~ilFslgGt~~Gm~E 156 (481)
T COG1288 132 GKEFLLIPVLFILFSLGGTVFGMGE 156 (481)
T ss_pred CCeEEEeeHHHHHHHhccccccchH
Confidence 5555443 35556667766666654
No 268
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=44.26 E-value=73 Score=19.43 Aligned_cols=36 Identities=3% Similarity=-0.154 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHhhhccccccccceeeeccCCcc
Q psy7965 29 AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS 64 (257)
Q Consensus 29 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~ 64 (257)
......+.++-.+.-+-....+|.-..--.+|.|++
T Consensus 35 ~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~~~~ 70 (76)
T PF06645_consen 35 SYTFYIYGAGVVLTLLVVVPPWPFYNRHPLKWLPPK 70 (76)
T ss_pred HHHHHHHHHHHHHHHhheeCCcHhhcCCcccCCCCC
Confidence 333444444444544444444444444444444443
No 269
>KOG1237|consensus
Probab=41.51 E-value=32 Score=30.34 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 32 IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 32 ~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
..+++---++.|+++........-+--+-+|++.|+.+.+++.....+|..+...+...
T Consensus 458 i~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~ 516 (571)
T KOG1237|consen 458 ILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSL 516 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667899999999999988888999999999999999999999999998887644
No 270
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=38.62 E-value=3.2e+02 Score=25.14 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=31.7
Q ss_pred ccc-CchhHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhhhcccc
Q psy7965 4 DKF-GRKPVILAFCFPYILSWLLILFAQN-IYMLFVARFIAGVGTGGL 49 (257)
Q Consensus 4 dr~-Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g~~ 49 (257)
|++ ||.+-++++.++++++++...+... -+.+..+-.+.+++.+..
T Consensus 51 ~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~ml 98 (704)
T TIGR01666 51 DRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFIML 98 (704)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 444 7888888999999999888877544 445555555666655543
No 271
>KOG0637|consensus
Probab=38.48 E-value=10 Score=32.02 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=37.2
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcccccccc
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAII 53 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 53 (257)
+.||+|-|+.+..+...+.++..+.+..++......-|-..|+-.+....+.
T Consensus 355 l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p 406 (498)
T KOG0637|consen 355 LSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVP 406 (498)
T ss_pred HHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhccc
Confidence 5688887777777777778888888888887777777777775444444433
No 272
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=34.77 E-value=1.4e+02 Score=24.02 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=20.6
Q ss_pred hhhhhHHHHHHHHhHHHHHHhhhh------h--HHHHHhhcC
Q psy7965 67 GALGSFFQMFLTLGVLYVYCLGLS------T--YTVIAIGCL 100 (257)
Q Consensus 67 ~~~~~~~~~~~~~G~~~~~~~~~~------~--Wr~~~~~~~ 100 (257)
|+.+-+.....+++.++|..+++. + ||..-.+.+
T Consensus 86 g~rll~ifli~sv~~vlGfIl~yp~~ksf~gd~Wka~gmi~g 127 (384)
T COG5505 86 GRRLLFIFLISSVGTVLGFILAYPLLKSFIGDLWKAGGMISG 127 (384)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhcchHHhhhhheee
Confidence 333444445556677777777666 4 887765555
No 273
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=34.24 E-value=11 Score=31.82 Aligned_cols=51 Identities=14% Similarity=0.084 Sum_probs=39.8
Q ss_pred HHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 40 FIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 40 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
++..+..+..+-....+++|..|+...|...++.....++|..++..++..
T Consensus 326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~ 376 (433)
T PF03092_consen 326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAF 376 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555666789999999999999999999999998888777765
No 274
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=30.34 E-value=1.4e+02 Score=25.82 Aligned_cols=37 Identities=14% Similarity=0.018 Sum_probs=31.6
Q ss_pred ceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 54 PMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 54 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
.....|.+..+|-.+..++++.+.+++.+++..+..+
T Consensus 170 w~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~ 206 (509)
T COG3202 170 WQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSW 206 (509)
T ss_pred HHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999888777666
No 275
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=29.33 E-value=62 Score=22.42 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=25.2
Q ss_pred eeccCCccchhhhhhHHHHHHHHhHHHHHHhhhhhH
Q psy7965 57 IGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLSTY 92 (257)
Q Consensus 57 i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~W 92 (257)
+.|++|+..|....+.+........-.....+..-|
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~~k~~~~~~g~a~W 95 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSAVKSLFSFSGKALW 95 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 579999999999998877666555544444444445
No 276
>PRK03612 spermidine synthase; Provisional
Probab=29.25 E-value=1.5e+02 Score=25.97 Aligned_cols=54 Identities=15% Similarity=0.003 Sum_probs=33.0
Q ss_pred HHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 36 FVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 36 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
...-++.++..|...|....+..+... ++-+...+-......+|.++|.++..+
T Consensus 114 ~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~ 167 (521)
T PRK03612 114 YVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPF 167 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHH
Confidence 334456778888888876665544322 223455666666677777777666555
No 277
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=29.00 E-value=48 Score=25.24 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=37.7
Q ss_pred HHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhh
Q psy7965 36 FVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGL 89 (257)
Q Consensus 36 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 89 (257)
...-+-.|+|.|...+....-+.+.+| +......++....+.+....|..+..
T Consensus 175 ~ALAMasGvGSgSMMaAa~~aL~~~~P-~~a~~i~A~AaaSNllt~~~G~Y~~i 227 (241)
T PF11299_consen 175 YALAMASGVGSGSMMAAASGALAAAYP-EMADQILAFAAASNLLTSVTGLYMSI 227 (241)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHCc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566899999999998888889996 55666777766666666665554443
No 278
>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins.
Probab=27.54 E-value=1.2e+02 Score=19.62 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhhhcc
Q psy7965 32 IYMLFVARFIAGVGTG 47 (257)
Q Consensus 32 ~~~~~~~r~l~G~~~g 47 (257)
.+..+++-+..|++.|
T Consensus 71 ~w~~i~~t~~vgvs~g 86 (97)
T PF11196_consen 71 WWLYIVLTFFVGVSFG 86 (97)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 279
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=27.47 E-value=2.6e+02 Score=25.68 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=31.5
Q ss_pred ccc-CchhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHhhhcccc
Q psy7965 4 DKF-GRKPVILAFCFPYILSWLLILFAQNI-YMLFVARFIAGVGTGGL 49 (257)
Q Consensus 4 dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~r~l~G~~~g~~ 49 (257)
|++ ||.+-++++.++++++++...+...+ +.+..+-.+.+++.+..
T Consensus 51 ~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~ml 98 (701)
T TIGR01667 51 DRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFILL 98 (701)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 444 78888999999999999888876544 44545555555555443
No 280
>KOG3626|consensus
Probab=26.99 E-value=1.1e+02 Score=28.02 Aligned_cols=59 Identities=8% Similarity=-0.071 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH-HHhHHHHHHhhhh
Q psy7965 32 IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL-TLGVLYVYCLGLS 90 (257)
Q Consensus 32 ~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~-~~G~~~~~~~~~~ 90 (257)
+..+++..++.-+..+...+....++-...|+|+|..++|+..+.. .+|.+-+|++-++
T Consensus 586 ~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~ 645 (735)
T KOG3626|consen 586 FLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGA 645 (735)
T ss_pred hHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhh
Confidence 4445555555555555556777788889999999999999965544 4577777777554
No 281
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.44 E-value=93 Score=20.52 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccccccc
Q psy7965 19 YILSWLLILFAQNIYMLFVARFIAGVGTGGLCAI 52 (257)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 52 (257)
..+|.++=-++.+-++.++...+.|++.|.....
T Consensus 60 a~iG~llD~~agTsPwglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 60 AGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3444455445666677788888899988865443
No 282
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=24.85 E-value=24 Score=17.69 Aligned_cols=10 Identities=40% Similarity=0.777 Sum_probs=0.0
Q ss_pred ccccCchhHH
Q psy7965 3 ADKFGRKPVI 12 (257)
Q Consensus 3 ~dr~Grr~~l 12 (257)
+|||||-...
T Consensus 3 sd~FGRd~~~ 12 (36)
T PF08080_consen 3 SDRFGRDLSY 12 (36)
T ss_dssp ----------
T ss_pred cchhcchhhH
Confidence 5777775443
No 283
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.25 E-value=1.2e+02 Score=19.14 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhccccccccceeeeccCCccc
Q psy7965 32 IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI 65 (257)
Q Consensus 32 ~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~ 65 (257)
.+=++++|.+.|-+.+...........|.-|..-
T Consensus 31 t~RL~iGR~ilGs~~S~~Aga~Li~~Pdl~plAv 64 (89)
T PF04550_consen 31 TLRLFIGRVILGSAVSVVAGAALIQFPDLPPLAV 64 (89)
T ss_pred chhHHhHHHHHhhHHHHHHHHHHhcCCCCCHHHH
Confidence 5668999999998888877777777777776544
No 284
>PRK10692 hypothetical protein; Provisional
Probab=22.92 E-value=2.1e+02 Score=18.04 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q psy7965 8 RKPVILAFCFPYILSWLLILF 28 (257)
Q Consensus 8 rr~~l~~~~~~~~~~~~~~~~ 28 (257)
||...+++-+++++|.+.+..
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~ 23 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVVMVV 23 (92)
T ss_pred chhhHHHhhHHHHHHHHHHHH
Confidence 677777787777777766544
No 285
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=22.44 E-value=1.7e+02 Score=16.75 Aligned_cols=38 Identities=8% Similarity=0.006 Sum_probs=24.0
Q ss_pred ccCCccchhhhhhHHHHHHHHhHHHHHHhhhh-hHHHHH
Q psy7965 59 EIAESSIRGALGSFFQMFLTLGVLYVYCLGLS-TYTVIA 96 (257)
Q Consensus 59 e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-~Wr~~~ 96 (257)
...-+++...+..+..+...-|..-+-.+-+. .||.+.
T Consensus 4 r~~G~k~~~lak~w~ps~~~~G~~~~l~lvy~TDWklIl 42 (56)
T PF08997_consen 4 RLIGPKYIELAKNWIPSAAAWGAAGGLALVYFTDWKLIL 42 (56)
T ss_dssp GG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhhcHHHHHHHHHhchhHHHHhhhhhhheeeecchHhhh
Confidence 34455666677777766666666666555555 898754
No 286
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=21.64 E-value=1.6e+02 Score=21.57 Aligned_cols=22 Identities=14% Similarity=-0.037 Sum_probs=13.9
Q ss_pred cccceeeeccCCccchhhhhhH
Q psy7965 51 AIIPMFIGEIAESSIRGALGSF 72 (257)
Q Consensus 51 ~~~~~~i~e~~~~~~r~~~~~~ 72 (257)
....+.+.+..|+++|.++.-+
T Consensus 15 ~~vi~~~~~~lp~~~r~kal~~ 36 (183)
T PF03741_consen 15 AFVIAMIFRKLPPEQRRKALFW 36 (183)
T ss_pred HHHHHHHHhCCCHHHhhhhHHH
Confidence 3344556666888877776554
No 287
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=21.03 E-value=1e+02 Score=20.28 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=15.4
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHh
Q psy7965 3 ADKFGRKPVILAFCFPYILSWLLILFA 29 (257)
Q Consensus 3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~ 29 (257)
+|.+.|+.-.+...+...++..+.+.+
T Consensus 24 s~gf~~~~~~il~~v~~~~sf~~Ls~a 50 (106)
T COG2076 24 SDGFTRLWPSILTIVGYGLSFYLLSLA 50 (106)
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHH
Confidence 456666666665655555555555543
No 288
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=20.96 E-value=1.3e+02 Score=19.26 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=4.6
Q ss_pred hhHHHHHHHHHH
Q psy7965 9 KPVILAFCFPYI 20 (257)
Q Consensus 9 r~~l~~~~~~~~ 20 (257)
|.++++|+..+.
T Consensus 3 kw~l~Lc~~SF~ 14 (95)
T PF13334_consen 3 KWVLLLCIASFC 14 (95)
T ss_pred hHHHHHHHHHHH
Confidence 333433333333
No 289
>PF12832 MFS_1_like: MFS_1 like family
Probab=20.40 E-value=69 Score=19.47 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=19.3
Q ss_pred ceeehhchHHHHHhcCCCCChhhHHHHHHHhhh
Q psy7965 177 VNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQC 209 (257)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (257)
...+..|.|.++++.| .+......+.++..+
T Consensus 16 ~g~~~Pfl~~~~~~~G--l~~~~iGil~~i~~~ 46 (77)
T PF12832_consen 16 LGCLYPFLPLYLKQLG--LSPSQIGILSAIRPL 46 (77)
T ss_pred HHHHHhhhhHhhhhcC--CCHHHHHHHHHHHHH
Confidence 4557778899998876 445454444444433
Done!