Query psy7965
Match_columns 257
No_of_seqs 231 out of 2162
Neff 11.1
Searched_HMMs 29240
Date Fri Aug 16 23:23:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.5E-28 5.3E-33 205.5 12.3 251 1-257 77-401 (491)
2 3o7q_A L-fucose-proton symport 99.8 7E-20 2.4E-24 150.8 5.5 89 2-90 84-175 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.8 2.7E-20 9.1E-25 153.8 1.3 99 2-100 85-193 (451)
4 2gfp_A EMRD, multidrug resista 99.6 4E-18 1.4E-22 137.7 -3.6 99 2-100 58-161 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.6 4.7E-16 1.6E-20 129.9 8.7 99 2-100 77-183 (491)
6 2xut_A Proton/peptide symporte 99.4 1.7E-13 5.7E-18 115.4 6.7 99 2-100 77-185 (524)
7 2cfq_A Lactose permease; trans 98.8 4.3E-12 1.5E-16 103.8 -11.0 100 1-100 65-174 (417)
8 4gc0_A D-xylose-proton symport 98.7 9.9E-09 3.4E-13 85.5 5.4 87 2-89 335-427 (491)
9 1pw4_A Glycerol-3-phosphate tr 98.6 1.4E-08 4.9E-13 83.4 2.5 99 2-100 311-420 (451)
10 2cfq_A Lactose permease; trans 98.6 6.7E-09 2.3E-13 84.9 0.5 99 2-100 282-386 (417)
11 4aps_A DI-OR tripeptide H+ sym 98.4 5.9E-08 2E-12 80.8 2.5 89 2-90 342-444 (491)
12 3o7q_A L-fucose-proton symport 98.2 5.6E-07 1.9E-11 73.6 3.9 96 2-100 318-419 (438)
13 2xut_A Proton/peptide symporte 97.6 1.8E-05 6.2E-10 66.3 2.4 81 10-90 374-463 (524)
14 2gfp_A EMRD, multidrug resista 97.6 8E-06 2.7E-10 65.4 0.0 68 30-98 289-361 (375)
15 2g9p_A Antimicrobial peptide l 34.5 6.4 0.00022 16.8 -0.3 9 3-11 7-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=1.5e-28 Score=205.51 Aligned_cols=251 Identities=27% Similarity=0.512 Sum_probs=180.9
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHH------------------HhhhHHHHHHHHHHHhhhccccccccceeeeccCC
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLLIL------------------FAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~ 62 (257)
+++||+|||++++++.+++.+++++++ +++|++.++++|+++|++.|...+..+.+++|+.|
T Consensus 77 ~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p 156 (491)
T 4gc0_A 77 YCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP 156 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 368999999999999999999999998 47899999999999999999999999999999999
Q ss_pred ccchhhhhhHHHHHHHHhHHHHHHhhhh-------------hHHHHHhhcC---------------ChHHHHhcCChHHH
Q psy7965 63 SSIRGALGSFFQMFLTLGVLYVYCLGLS-------------TYTVIAIGCL---------------TPIFLMKSGKPEKA 114 (257)
Q Consensus 63 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~-------------~Wr~~~~~~~---------------~~~~l~~~~~~~~~ 114 (257)
+++|++..++.+.+...|.++++.++.. .||+.+.+.. +|+|+..+++.+++
T Consensus 157 ~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a 236 (491)
T 4gc0_A 157 AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQA 236 (491)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHH
T ss_pred HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHH
Confidence 9999999999999999999988887643 5777665544 99999999999999
Q ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHhhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCC
Q psy7965 115 EVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGST 194 (257)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (257)
.+.+++...++...+++.+. ++..++ +++.......++ .++.........++++.+.+.+.+|.+.+.+..+..
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T 4gc0_A 237 EGILRKIMGNTLATQAVQEI-KHSLDH-GRKTGGRLLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS 310 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHTTHHHHSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC
T ss_pred HHhHHHhcCCchhHHHHHHH-HHHHHh-hhhhhhHHHHhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC
Confidence 98887765443222221111 111111 111111222222 234556666667777777888889999888877522
Q ss_pred -CChhhHHHHHHHhhhhhhhcc---------------------------ccCCCccccchHHHHHHHHHHHHHhhccccc
Q psy7965 195 -LDPSISAIIVGVVQCIVTGLS---------------------------NSGSDVSSIAFLPLISVIMFIVMFSLGFGPI 246 (257)
Q Consensus 195 -~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (257)
.+......+.++..+++.+++ .............+..++++..+++.+++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPV 390 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHH
Confidence 223444556666666666655 0011122233344555666777888999999
Q ss_pred cceeeccccCC
Q psy7965 247 PWMMVGELFAA 257 (257)
Q Consensus 247 ~~~~~~e~~P~ 257 (257)
.|++.+|++|+
T Consensus 391 ~~~~~~E~fPt 401 (491)
T 4gc0_A 391 CWVLLSEIFPN 401 (491)
T ss_dssp HHHHHHHSSCT
T ss_pred HHHHHHHhCCH
Confidence 99999999996
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.78 E-value=7e-20 Score=150.79 Aligned_cols=89 Identities=24% Similarity=0.261 Sum_probs=85.5
Q ss_pred cccccCchhHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLI---LFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT 78 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 78 (257)
++||+|||++++++.++.+++.++. .++++++.++++|++.|++.|...+....++.|++|+++|++++++.+.+.+
T Consensus 84 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 163 (438)
T 3o7q_A 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 6899999999999999999999999 8889999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhhh
Q psy7965 79 LGVLYVYCLGLS 90 (257)
Q Consensus 79 ~G~~~~~~~~~~ 90 (257)
+|.++++.++..
T Consensus 164 ~g~~~g~~~~~~ 175 (438)
T 3o7q_A 164 FGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHHHHH
Confidence 999999988766
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.77 E-value=2.7e-20 Score=153.80 Aligned_cols=99 Identities=16% Similarity=0.044 Sum_probs=93.5
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILF----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL 77 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 77 (257)
++||+|||++++++.++.+++.++.++ ++|++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.
T Consensus 85 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 164 (451)
T 1pw4_A 85 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 164 (451)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHH
Confidence 689999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhhh-----h-HHHHHhhcC
Q psy7965 78 TLGVLYVYCLGLS-----T-YTVIAIGCL 100 (257)
Q Consensus 78 ~~G~~~~~~~~~~-----~-Wr~~~~~~~ 100 (257)
.+|.++++.++.. + ||+.|++.+
T Consensus 165 ~~g~~~g~~~~~~l~~~~g~w~~~f~~~~ 193 (451)
T 1pw4_A 165 NVGGGIPPLLFLLGMAWFNDWHAALYMPA 193 (451)
T ss_dssp HHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999888865 6 999888766
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.64 E-value=4e-18 Score=137.67 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=94.3
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||+++..+.++..++.++..+++|++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|.
T Consensus 58 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 137 (375)
T 2gfp_A 58 ISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP 137 (375)
T ss_dssp HHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh-----hHHHHHhhcC
Q psy7965 82 LYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.+++.++.. +||+.+.+.+
T Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 138 LLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhccHHHHHHHHH
Confidence 999999877 8999988766
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.63 E-value=4.7e-16 Score=129.89 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=92.6
Q ss_pred cccc-cCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccc--hhhhhhHHHHHHH
Q psy7965 2 FADK-FGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI--RGALGSFFQMFLT 78 (257)
Q Consensus 2 l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~ 78 (257)
++|| +|||+++..+.++.+++.++.++++|++.++++|++.|++.|...+...+++.|++|+++ |+.+.++++.+.+
T Consensus 77 l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 156 (491)
T 4aps_A 77 VADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGIN 156 (491)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHH
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHH
Confidence 6899 899999999999999999999999999999999999999999999999999999999998 7788888999999
Q ss_pred HhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 79 LGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 79 ~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
+|..++|.++.. +||+.|++.+
T Consensus 157 ~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 157 LGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999988877 8999988875
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.42 E-value=1.7e-13 Score=115.36 Aligned_cols=99 Identities=17% Similarity=0.297 Sum_probs=91.6
Q ss_pred ccccc-CchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH---HHHH
Q psy7965 2 FADKF-GRKPVILAFCFPYILSWLLILFAQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF---FQMF 76 (257)
Q Consensus 2 l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~ 76 (257)
++||+ |||+++.++.++.+++.++..+++ +++.++++|++.|++.+...+...+++.|++|+++|+++.+. .+..
T Consensus 77 l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 156 (524)
T 2xut_A 77 IADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFT 156 (524)
T ss_dssp HHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 68999 999999999999999999999998 999999999999999999999999999999999999877666 8889
Q ss_pred HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 77 LTLGVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
.++|.++++.+++. +||+.|.+.+
T Consensus 157 ~~~g~~~g~~~~~~l~~~~g~~~~f~~~~ 185 (524)
T 2xut_A 157 INFGSFFASLSMPLLLKNFGAAVAFGIPG 185 (524)
T ss_dssp HHHHHHHHHHTSTHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 99999999988776 8999988766
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.84 E-value=4.3e-12 Score=103.85 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=62.7
Q ss_pred CcccccCchhHHHHHHHHHHHHHHH---HHHhhhHH-HHHHHHHHHhhhccccccccceeeeccCCc--cchhhhhhHHH
Q psy7965 1 PFADKFGRKPVILAFCFPYILSWLL---ILFAQNIY-MLFVARFIAGVGTGGLCAIIPMFIGEIAES--SIRGALGSFFQ 74 (257)
Q Consensus 1 ~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~-~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~ 74 (257)
+++||+|||++++++..+.+++... ..+++... .+...+.+.|++.|...+.....+.++.++ ++|+...+..+
T Consensus 65 ~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 144 (417)
T 2cfq_A 65 LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR 144 (417)
T ss_dssp HHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHS
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHH
Confidence 3689999999999988777553221 12222211 234566666666655554444445555443 34566666666
Q ss_pred HHHHHhHHHHHHhhhh----hHHHHHhhcC
Q psy7965 75 MFLTLGVLYVYCLGLS----TYTVIAIGCL 100 (257)
Q Consensus 75 ~~~~~G~~~~~~~~~~----~Wr~~~~~~~ 100 (257)
....+|..++|.++.. +||+.|++.+
T Consensus 145 ~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~ 174 (417)
T 2cfq_A 145 MFGCVGWALGASIVGIMFTINNQFVFWLGS 174 (417)
T ss_dssp SSTTTHHHHHHHHHHHHHHHCSHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 6667777777777665 7999988776
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.73 E-value=9.9e-09 Score=85.45 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=61.5
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHH-HHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQ-----NIYMLFVAR-FIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM 75 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~r-~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 75 (257)
+.||+|||+.++.+.....++.+..+... +...+...- +..+++. +..+..+.+.+|.+|++.|++++++...
T Consensus 335 l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~ 413 (491)
T 4gc0_A 335 TVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVA 413 (491)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHH
T ss_pred HHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence 57999999999999888888777665421 122222222 2223322 3346677899999999999999999988
Q ss_pred HHHHhHHHHHHhhh
Q psy7965 76 FLTLGVLYVYCLGL 89 (257)
Q Consensus 76 ~~~~G~~~~~~~~~ 89 (257)
...+|.++++.+..
T Consensus 414 ~~~~~~~i~~~~~p 427 (491)
T 4gc0_A 414 AQWLANYFVSWTFP 427 (491)
T ss_dssp HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887766543
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.59 E-value=1.4e-08 Score=83.43 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=83.2
Q ss_pred ccccc--CchhHHHHHHHHHH-HHHHHHHHh--hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965 2 FADKF--GRKPVILAFCFPYI-LSWLLILFA--QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF 76 (257)
Q Consensus 2 l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 76 (257)
+.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+..
T Consensus 311 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 390 (451)
T 1pw4_A 311 MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 390 (451)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence 57999 99999988877766 666666555 36778888889999999988888889999999999999999999999
Q ss_pred HHH-hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965 77 LTL-GVLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 77 ~~~-G~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..+ |..+++.+.+. +|+..+++.+
T Consensus 391 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 420 (451)
T 1pw4_A 391 GYLGGSVAASAIVGYTVDFFGWDGGFMVMI 420 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999 99999888766 6777776655
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.59 E-value=6.7e-09 Score=84.88 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=80.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH-HHHHHHHh
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF-FQMFLTLG 80 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G 80 (257)
++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+|++.|+.+.+. ++....+|
T Consensus 282 l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg 361 (417)
T 2cfq_A 282 IINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHH
Confidence 68999999999998888888877777777888888888888887776667778899999999999999888 47777888
Q ss_pred HHHHHHhhhh-----hHHHHHhhcC
Q psy7965 81 VLYVYCLGLS-----TYTVIAIGCL 100 (257)
Q Consensus 81 ~~~~~~~~~~-----~Wr~~~~~~~ 100 (257)
..++|.+.+. +++..|.+.+
T Consensus 362 ~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 362 MIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp HHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 8888887765 5666665544
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.45 E-value=5.9e-08 Score=80.80 Aligned_cols=89 Identities=11% Similarity=0.008 Sum_probs=74.0
Q ss_pred cccccCchhHHH-----HHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHhhhccccccccceeeeccCCccchh
Q psy7965 2 FADKFGRKPVIL-----AFCFPYILSWLLILFAQ---------NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRG 67 (257)
Q Consensus 2 l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~ 67 (257)
+.||+|||+... .+.++.+++.++..... +.+.+.+.-++.|++.+...+....++.|.+|+++|+
T Consensus 342 l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g 421 (491)
T 4aps_A 342 LWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS 421 (491)
T ss_dssp HHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence 579999987655 67777777766666643 6677888889999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhHHHHHHhhhh
Q psy7965 68 ALGSFFQMFLTLGVLYVYCLGLS 90 (257)
Q Consensus 68 ~~~~~~~~~~~~G~~~~~~~~~~ 90 (257)
.+.++.+....+|..+++.+...
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988876
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.25 E-value=5.6e-07 Score=73.64 Aligned_cols=96 Identities=13% Similarity=-0.031 Sum_probs=77.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV 81 (257)
Q Consensus 2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 81 (257)
++||+|||+++..+.++..++.++..+.++...+... ++.|++.+...+....+..|.+|++ |+.+.++.. ...+|.
T Consensus 318 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~ 394 (438)
T 3o7q_A 318 LISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGG 394 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHH
Confidence 6899999999999999999999888888777655444 8889999999999999989999866 888888766 455888
Q ss_pred HHHHHhhhh-----h-HHHHHhhcC
Q psy7965 82 LYVYCLGLS-----T-YTVIAIGCL 100 (257)
Q Consensus 82 ~~~~~~~~~-----~-Wr~~~~~~~ 100 (257)
.++|.+.+. + ++..+.+.+
T Consensus 395 ~~~~~~~g~l~~~~g~~~~~~~~~~ 419 (438)
T 3o7q_A 395 GIVTPVMGFVSDAAGNIPTAELIPA 419 (438)
T ss_dssp HHHHHHHHHHHHHHTSSGGGGHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHH
Confidence 888887766 5 777666544
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.63 E-value=1.8e-05 Score=66.30 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965 10 PVILAFCFPYILSWLLILFA---------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG 80 (257)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 80 (257)
+.+..+.++.+++.++.++. .+.+.+.+..++.|++.+...+....++.|..|+++|++++++.+....+|
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 453 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG 453 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHH
Confidence 46667777777777776653 256777888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q psy7965 81 VLYVYCLGLS 90 (257)
Q Consensus 81 ~~~~~~~~~~ 90 (257)
..+++.+.+.
T Consensus 454 ~~~g~~~~g~ 463 (524)
T 2xut_A 454 NLWVLLANVS 463 (524)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888766
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.62 E-value=8e-06 Score=65.39 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh-----hHHHHHhh
Q psy7965 30 QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS-----TYTVIAIG 98 (257)
Q Consensus 30 ~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~Wr~~~~~ 98 (257)
++.+.+.+..++.|++.+...+....++.|..| ++|+++.++.+....+|..+++.+.+. +|+..+.+
T Consensus 289 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 289 MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 467778888899999999999999999999998 899999999999999999988888766 45555443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=34.49 E-value=6.4 Score=16.80 Aligned_cols=9 Identities=56% Similarity=1.029 Sum_probs=5.6
Q ss_pred ccccCchhH
Q psy7965 3 ADKFGRKPV 11 (257)
Q Consensus 3 ~dr~Grr~~ 11 (257)
..+||||.+
T Consensus 7 ikkfgrkai 15 (26)
T 2g9p_A 7 IKKFGRKAI 15 (26)
T ss_dssp HHHHTSHHH
T ss_pred HHHHhHHHH
Confidence 456777753
Done!