RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7965
(257 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 124 bits (314), Expect = 4e-33
Identities = 92/312 (29%), Positives = 150/312 (48%), Gaps = 59/312 (18%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIG 58
D+FGRK +L +++ LL FA+ + YML V R I G+G GG+ ++PM+I
Sbjct: 68 KLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYIS 127
Query: 59 EIAESSIRGALGSFFQMFLTLGVLYVYCLGLSTYTVIA-------------------IGC 99
EIA +RGALGS +Q+ +T G+L +GL IG
Sbjct: 128 EIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGL 187
Query: 100 L----TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAA-SEKKATFSDLFS 154
L +P +L+ GK E+A L RG DV E+ + ++ + +KA++ +LF
Sbjct: 188 LFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEKASWLELFR 246
Query: 155 SRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGL 214
+ + L++ + L IFQQ +G+N + +YS IF++ G + D + IIVGVV + T +
Sbjct: 247 GKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS-DSLLVTIIVGVVNFVFTFI 305
Query: 215 SNSGSDV-------------------------------SSIAFLPLISVIMFIVMFSLGF 243
+ D + ++ +++FI F+LG+
Sbjct: 306 AIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGW 365
Query: 244 GPIPWMMVGELF 255
GP+PW++V ELF
Sbjct: 366 GPVPWVIVSELF 377
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 109 bits (274), Expect = 2e-27
Identities = 88/321 (27%), Positives = 145/321 (45%), Gaps = 67/321 (20%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLIL---FAQNIYMLFVARFIAGVGTGGLCAIIPMFI 57
+D+FGRK +L +++ +L+ FA ++ ML V R + G+G G A++PM++
Sbjct: 93 WLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYL 152
Query: 58 GEIAESSIRGALGSFFQMFLTLGVLYVYCLGLST------------------YTVIAIGC 99
EIA ++RGAL S +Q+ +T G+L Y G +
Sbjct: 153 SEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLG 212
Query: 100 L-----TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASE-----KKATF 149
L +P +L+ G+ E+A SL RG EL + ID + ++
Sbjct: 213 LFFLPESPRWLVGKGRVEEARKSLARLRG-TSGEDKELLDELELIDIKRSIEKRSVQPSW 271
Query: 150 SDLFSSRANLRG-LIVSLGLMIFQQFSGVNTVIFYSNDIFKSAG-STLDPSISAIIVGVV 207
LFSS +R L + + L FQQF+G+N +++YS IF++AG ST + +IIVG V
Sbjct: 272 GSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAV 331
Query: 208 QCIVT---------------------------------GLSNSGSDVSSIAFLPLISVIM 234
T G S S + ++ +++
Sbjct: 332 NFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILL 391
Query: 235 FIVMFSLGFGPIPWMMVGELF 255
FI F++G+GP+PW++V E+F
Sbjct: 392 FIAFFAMGWGPVPWVIVSEIF 412
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 89.0 bits (221), Expect = 3e-20
Identities = 75/322 (23%), Positives = 133/322 (41%), Gaps = 74/322 (22%)
Query: 2 FADKFGRKPVILAFCFPYILSWL------LILFAQN------IYMLFVARFIAGVGTGGL 49
+++FGR+ + + +S L + + + R I G+G G
Sbjct: 78 CSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLA 137
Query: 50 CAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCL-------GLSTYTV-------I 95
+ PM+I EIA + IRG L SF Q + G L VY + G +++
Sbjct: 138 SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMF 197
Query: 96 AIGCL--------------TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDA 141
A + TP +LM GK E+AE LR G L I+ +
Sbjct: 198 ASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-LATQALQEIK---HS 253
Query: 142 ASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPS-IS 200
+ T L + +++ + L +FQQF G+N V++Y+ +IFK+ G++ D + +
Sbjct: 254 LDHGRKTGGKLLMFGVGV--IVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQ 311
Query: 201 AIIVGVVQCIVTGLSNSGSD---------------------------VSSIAFLPLISVI 233
IIVGV+ T L+ D + + L+S++
Sbjct: 312 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 371
Query: 234 MFIVMFSLGFGPIPWMMVGELF 255
++ F++ +GP+ W+++ E+F
Sbjct: 372 FYVAAFAMSWGPVCWVLLSEIF 393
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 52.7 bits (127), Expect = 6e-08
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 32/192 (16%)
Query: 3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
+D+FGRK V+L +S +L F+ N + V R + G+G GG+ + E
Sbjct: 151 SDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLP 210
Query: 63 SSIRGALGSFFQMFLTLGVLYVYCLGLSTY------------------TVIAIGCL--TP 102
R +G+ Q+F +LG++ L L Y + + +P
Sbjct: 211 KKQRAIVGTLIQVFFSLGLVL---LPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESP 267
Query: 103 IFLMKSGKPEKAEVSLRYYRGAQYD---VATELAAIQKEIDAASEK-KATFSDLFSSRAN 158
+L+ G+ E+A L+ R A+ + + E+ ++ E D +S K + +F DLF + N
Sbjct: 268 RWLISQGRIEEALKILQ--RIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTP-N 324
Query: 159 LRGLIVSLGLMI 170
LR +L LM+
Sbjct: 325 LR--KTTLCLMM 334
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 46.2 bits (110), Expect = 7e-06
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
+D+FGR+ V+L + L LL+ FA ++++L V RF+ G+G G L I E
Sbjct: 56 YLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEW 115
Query: 61 AESSIRGALGSFFQMFLTLGVL 82
RG F LG L
Sbjct: 116 FPPKERGRALGLFSAGFGLGAL 137
Score = 30.4 bits (69), Expect = 0.83
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 1 PFADKFGRKPVILAFCFP-YILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGE 59
+D+ GR+ ++L L LL+ A ++ +L VA + G G G + E
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292
Query: 60 IAESSIRGALGSFFQMFLTLG 80
+A RG F F +LG
Sbjct: 293 LAPPEARGTASGLFNTFGSLG 313
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 44.1 bits (105), Expect = 4e-05
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTG 47
P +D+ GR+PVIL +IL L+ LFA ++ +L A I G+GTG
Sbjct: 65 PLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTG 111
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 43.9 bits (104), Expect = 4e-05
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
P AD+ GR+ V+L + + LL A N+ L + RF+AG+G GGL + + E
Sbjct: 74 PLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEY 133
Query: 61 AESSIRGALGSFFQMFLTLGVL 82
A RG +G
Sbjct: 134 APKRFRGTAVGLMFCGYPIGAA 155
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 42.0 bits (99), Expect = 1e-04
Identities = 24/82 (29%), Positives = 37/82 (45%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
+D+FGR+ V+L + L LL+LFA ++++L V R + G+G G L I +
Sbjct: 54 RLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADW 113
Query: 61 AESSIRGALGSFFQMFLTLGVL 82
RG LG
Sbjct: 114 FPPEERGRALGLLSAGFGLGAA 135
Score = 27.4 bits (61), Expect = 8.7
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 2 FADKFGRKP---VILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIG 58
+D+ GR+ + L L L+ ++ L VA + G G G + + +
Sbjct: 260 LSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVS 319
Query: 59 EIAESSIRGALGSFFQMFLTLG 80
++A RG + +LG
Sbjct: 320 DLAPKEERGTASGLYNTAGSLG 341
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 42.2 bits (100), Expect = 1e-04
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAI 52
P +D+ GR+PV+LA +IL+ L IL AQ+I + RF+ G+ GLC I
Sbjct: 70 PLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGI---GLCFI 118
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 41.2 bits (97), Expect = 3e-04
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVG 45
P +D++GR+PV+L F + LS L + + NI L V RF+ G
Sbjct: 62 PLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFG 106
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 39.6 bits (93), Expect = 3e-04
Identities = 26/82 (31%), Positives = 37/82 (45%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
D+FGRKPV+L F ++LS + + NI +L +ARF+ G G I +I
Sbjct: 20 LLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADI 79
Query: 61 AESSIRGALGSFFQMFLTLGVL 82
RG + LG L
Sbjct: 80 YPPEERGVALGLMSAGIALGPL 101
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 40.3 bits (94), Expect = 7e-04
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGG 48
ADKFGRKP+++ Y + L A + ML ++RFI G+G G
Sbjct: 77 ADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAG 122
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 39.1 bits (92), Expect = 0.001
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVG 45
P +D++GRKPV+LA + L L +L+ ++ L V RF+ VG
Sbjct: 63 PLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVG 107
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 38.0 bits (89), Expect = 0.003
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAII 53
+ R+ ++L +I+S LL A + +L +AR +AG+ G +I
Sbjct: 70 LLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIA 122
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 36.0 bits (84), Expect = 0.013
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFA--QNIYMLFVARFIAGVGTGGLCAIIPMFIG 58
A +FG+K L + +L+ F ++++ V +AG+G G + +
Sbjct: 279 WLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLA 338
Query: 59 EIAE 62
++ +
Sbjct: 339 DVVD 342
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 36.0 bits (83), Expect = 0.014
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIA 61
+ D++GR+ ++ + L FA +F+AR + G+G GG ++ E
Sbjct: 70 WGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESW 129
Query: 62 ESSIRGALGSFFQMFLTLGVLY--------VYCLGLSTYTVIAIGCLTPIFLM 106
+R +G + V G + I L IF +
Sbjct: 130 PKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 36.1 bits (84), Expect = 0.015
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 2 FADKFGRKPV-ILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
AD+ GRK + I++ + S L A + L VAR + GVG GG +P I
Sbjct: 73 LADRIGRKRILIVSVALFGLFS-LATAQAWDFPSLLVARLLTGVGLGG---ALPNLIALT 128
Query: 61 AES 63
+E+
Sbjct: 129 SEA 131
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 34.2 bits (79), Expect = 0.052
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGL 49
AD+ GRKPV + +I++ LL A+ + RF+ G+G G
Sbjct: 62 ADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCC 108
>gnl|CDD|129856 TIGR00774, NhaB, Na+/H+ antiporter NhaB. These proteins are
members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC
2.A.34). The only characterised member of this family is
the Escherichia coli NhaB protein, which has 12 GES
predicted transmembrane regions, and catalyses
sodium/proton exchange. Unlike NhaA this activity is not
pH dependent [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 515
Score = 34.1 bits (78), Expect = 0.063
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 10 PVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGAL 69
P++ P++ WLL+ A+ I+ L +A + GGL AI + IG + + ++ L
Sbjct: 33 PIVFFLISPFVAGWLLV--AEFIFTLAMALKCYPLQPGGLLAIEAIAIGMTSAAHVKHEL 90
Query: 70 GSFFQ-----MFLTLGVLYVYCLGLSTYTVIAIGCLTPIFL 105
+ + +F+ G+ ++ L L +T + +G + L
Sbjct: 91 VANIEVLLLLVFMVAGIYFMKQLLLFIFTKLLLGIRSKTLL 131
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 34.0 bits (78), Expect = 0.068
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAG 43
P +D+ GR+PV++ + L+ LF ++ +ARFI G
Sbjct: 73 PLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQG 115
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 34.2 bits (78), Expect = 0.070
Identities = 36/151 (23%), Positives = 54/151 (35%), Gaps = 33/151 (21%)
Query: 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIA 61
ADK GRK +L F Q R ++G G GG I+ + E
Sbjct: 225 LADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFL 284
Query: 62 ESSIRGALGSFFQMFLTLGVLY----------------------------VYCLGLSTYT 93
RG S+ MF +G +Y V+ + +
Sbjct: 285 AQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPC 344
Query: 94 VIAIGCLT-----PIFLMKSGKPEKAEVSLR 119
V AIG LT P F +++GK ++A + L+
Sbjct: 345 VFAIGALTFMPESPRFFLENGKHDEAWMILK 375
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 33.7 bits (78), Expect = 0.078
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAG 43
P AD FGRKPVIL + L+ + AQ I L RF+ G
Sbjct: 48 PMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHG 90
>gnl|CDD|145103 pfam01770, Folate_carrier, Reduced folate carrier. The reduced
folate carrier (a transmembrane glycoprotein) transports
reduced folate into mammalian cells via the carrier
mediated mechanism (as opposed to the receptor mediated
mechanism) it also transports cytotoxic folate analogues
used in chemotherapy, such as methotrexate (MTX).
Mammalian cells have an absolute requirement for
exogenous folates which are needed for growth, and
biosynthesis of macromolecules.
Length = 410
Score = 33.4 bits (77), Expect = 0.12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 4 DKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGT 46
D KPVI+ I++WLL+LF ++ + V F GV T
Sbjct: 66 DYLRYKPVIILQGLAGIVTWLLLLFTTSVIAMQVMEFFYGVAT 108
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 33.0 bits (76), Expect = 0.13
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 1 PFADKFGRKPVILAFCFPYILSWLLILF--AQNIYMLFVARFIAGVGTGGLCAIIPMFIG 58
KFG+K + L + +LL+ F A ++ ++ VA IAGVGTG + +
Sbjct: 294 RLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVA 353
Query: 59 EIAE 62
+ +
Sbjct: 354 DTVD 357
>gnl|CDD|148201 pfam06450, NhaB, Bacterial Na+/H+ antiporter B (NhaB). This family
consists of several bacterial Na+/H+ antiporter B (NhaB)
proteins. The exact function of this family is unknown.
Length = 515
Score = 32.1 bits (73), Expect = 0.30
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 10 PVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGAL 69
P++ P++ WLL+ A+ I+ L +A + GGL AI + IG + ++ +
Sbjct: 33 PIVFFLISPFVAGWLLV--AEFIFTLAMALKCYPLQPGGLLAIEAVAIGMTSAKHVKHEI 90
Query: 70 GSFFQ-----MFLTLGVLYVYCLGLSTYTVIAIGCLTPIFL 105
+ + +F+ G+ ++ L L +T + + + I L
Sbjct: 91 MANLEVLLLLVFMVAGIYFMKQLLLFIFTKLLLKIRSKILL 131
>gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791). This
family consists of several eukaryotic proteins of
unknown function.
Length = 354
Score = 31.4 bits (71), Expect = 0.43
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
ADK GRK L +C YILS + N +L + RF+ G+ T L + ++ IAE
Sbjct: 93 ADKQGRKRACLTYCILYILSCITKHSP-NYKVLMIGRFLGGIATSLLFSAFESWL--IAE 149
Query: 63 SSIRG 67
+ RG
Sbjct: 150 HNKRG 154
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 30.9 bits (70), Expect = 0.58
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAI 52
F DK+G + V++ L W+L +A ++ L+ A +AG+G G +
Sbjct: 61 FVDKYGPRIVVMFGGIMCGLGWVLNAYADSLPALYAAAVVAGIGAGAVYGT 111
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 29.7 bits (67), Expect = 1.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 4 DKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGG 48
D++GR+ ++ + + L FA + LF+AR + G+G G
Sbjct: 80 DRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAG 124
>gnl|CDD|183181 PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR;
Provisional.
Length = 224
Score = 28.7 bits (64), Expect = 2.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 136 QKEIDAASEKKATFSDLFSSRANLRGLIVSLGL 168
QK AS + D+F +RAN+ ++VSL +
Sbjct: 65 QKGYRVASMSEQELLDIFDARANMEAMLVSLAI 97
>gnl|CDD|225609 COG3067, NhaB, Na+/H+ antiporter [Inorganic ion transport and
metabolism].
Length = 516
Score = 29.3 bits (66), Expect = 2.4
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 10 PVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGAL 69
P+I F P++ WLL+ A+ I+ L +A + GGL AI + IG + ++ +
Sbjct: 33 PLIFFFISPFVAGWLLV--AEFIFTLAMALKCYPLQPGGLLAIEAVAIGMTSPEHVKEEV 90
Query: 70 GSFFQ-----MFLTLGVLYVYCLGLSTYTVIAIGCLTPIFL 105
+ + MF+ G+ ++ L L +T + + + + L
Sbjct: 91 AANLEVLLLLMFMVAGIYFMKQLLLFIFTRLLLSIRSKMLL 131
>gnl|CDD|147008 pfam04639, Baculo_E56, Baculoviral E56 protein, specific to ODV
envelope. This family represents the E56 protein, which
is localises to the occlusion derived virus (ODV)
envelope, but not to the budded virus (BV) envelope.
Length = 308
Score = 28.8 bits (65), Expect = 2.7
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 210 IVTGLSNSGSDVSSIAFLPLISVIMFIV 237
+VT SNS VS + LP+I VI ++
Sbjct: 264 LVTKSSNSSKSVSD-SLLPIILVIGGVL 290
>gnl|CDD|181241 PRK08130, PRK08130, putative aldolase; Validated.
Length = 213
Score = 27.9 bits (63), Expect = 4.0
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 19/58 (32%)
Query: 90 STYTVIAIGCL------------TPIFLMKSGKPEKAEVSL-RYYRGAQYDVATELAA 134
ST+ A+ CL TP ++M+ G V L YYR +A LA
Sbjct: 96 STHLT-ALSCLGGLDPTNVLPPFTPYYVMRVGH-----VPLIPYYRPGDPAIAEALAG 147
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 28.4 bits (64), Expect = 4.1
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 2 FADKFGRKPVILAFCFPYILSWLLILFA-QNIYMLFVARFIAGVGTG 47
KFGRK + +L +L+ FA N+ ++ V +AG G
Sbjct: 280 LVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQN 326
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.4 bits (64), Expect = 4.5
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 18/88 (20%)
Query: 21 LSWLLILFAQNIYMLFVARFIAGVGTGGLC---------AIIPMFIGEIAESSIRGALGS 71
L WLLIL I ++ + F VG G L ++ + +GE + G
Sbjct: 482 LGWLLILLG--ILLIVLGGFGLVVGLGPLGLIGKYLIIGGVVLIILGEGIDGKSLGGALG 539
Query: 72 FFQMFLTLGVL-----Y--VYCLGLSTY 92
++ G L Y + LGL+
Sbjct: 540 GLGLYEITGYLGDVLSYARLMALGLAGA 567
>gnl|CDD|182876 PRK10974, PRK10974, glycerol-3-phosphate transporter periplasmic
binding protein; Provisional.
Length = 438
Score = 27.8 bits (62), Expect = 5.4
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDP 197
G ++ Q F+ V++Y+ D FK AG LDP
Sbjct: 135 GHLLSQPFNSSTPVLYYNKDAFKKAG--LDP 163
>gnl|CDD|132855 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like phospholipase.
Patatin is a storage protein of the potato tuber that
shows Phospholipase A2 activity (PLA2; EC 3.1.1.4).
Patatin catalyzes the nonspecific hydrolysis of
phospholipids, glycolipids, sulfolipids, and mono- and
diacylglycerols, thereby showing lipid acyl hydrolase
activity. The active site includes an oxyanion hole
with a conserved GGxR motif; it is found in almost all
the members of this family. The catalytic dyad is
formed by a serine and an aspartate. Patatin belongs to
the alpha-beta hydrolase family which is identified by
a characteristic nucleophile elbow with a consensus
sequence of Sm-X-Nu-Sm (Sm = small residue, X = any
residue and Nu = nucleophile). Members of this family
have been found also in vertebrates. This family
includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9
(iPLA2-beta) like phospholipases from human as well as
the Pat17 isozyme from Solanum cardiophyllum.
Length = 309
Score = 28.0 bits (63), Expect = 5.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 41 IAGVGTGGLCAI 52
I G TGGL AI
Sbjct: 46 IGGTSTGGLIAI 57
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 28.0 bits (63), Expect = 6.6
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 113 KAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQ 172
+A + LR R E I+KE+ ++ A + +S L +I L I +
Sbjct: 421 EAILDLRLRRLT----GLEEEKIEKELKELEKEIADLEKILASEERLLDIIKKELLEIKK 476
Query: 173 QF 174
+F
Sbjct: 477 KF 478
>gnl|CDD|215078 PLN00150, PLN00150, potassium ion transporter family protein;
Provisional.
Length = 779
Score = 27.9 bits (62), Expect = 6.8
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 189 KSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLISVIMFIVMFSLG 242
K+A S LD ++ II V+ I+ L G+ S F P I FSL
Sbjct: 203 KAASSGLDTNLVTIISCVILVILFSLQRFGTHKVSFLFAP----IFLCWFFSLA 252
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 27.6 bits (62), Expect = 7.1
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 2 FADKFGRKPV----ILAFCFPYILSWLLILFAQ----NIYMLFVARFIAGVGTGGLCAII 53
F D+ GRK +L +L LL +A +L +AR I G GG
Sbjct: 58 FGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGA 117
Query: 54 PMFIGEIAESSIRGALGSFFQMFLTLGVL 82
+++ E A RG GSF Q+ +G+L
Sbjct: 118 ALYLAEYAPPGKRGFYGSFQQVGAPVGLL 146
>gnl|CDD|182022 PRK09664, PRK09664, tryptophan permease TnaB; Provisional.
Length = 415
Score = 27.5 bits (61), Expect = 8.7
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 6 FGR-KPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAII 53
GR K V+L F P +L Y++F FI G+G GLCA I
Sbjct: 321 GGRFKTVLLTFLPPALL-----------YLIFPNGFIYGIGGAGLCATI 358
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.143 0.425
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,291,692
Number of extensions: 1312657
Number of successful extensions: 2808
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2761
Number of HSP's successfully gapped: 216
Length of query: 257
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 162
Effective length of database: 6,723,972
Effective search space: 1089283464
Effective search space used: 1089283464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.1 bits)