RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7965
         (257 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 33.1 bits (74), Expect = 0.026
 Identities = 25/257 (9%), Positives = 64/257 (24%), Gaps = 7/257 (2%)

Query: 1   PFADKFGRKPVILA----FCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMF 56
             +D+   +  + A         +    +     +I ++FV  F+ G   G         
Sbjct: 81  SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 140

Query: 57  IGEIAESSIRGALGSFFQMFLTLGVL---YVYCLGLSTYTVIAIGCLTPIFLMKSGKPEK 113
           +        RG + S +     +G      ++ LG++ +         P F         
Sbjct: 141 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 200

Query: 114 AEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQ 173
             +     +        E      +      ++   +     +  L   ++    +    
Sbjct: 201 FAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF 260

Query: 174 FSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLISVI 233
              +   I   +  +           S+    + +      +     +S   F       
Sbjct: 261 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 320

Query: 234 MFIVMFSLGFGPIPWMM 250
               M  +    I + M
Sbjct: 321 GVFFMTLVTIATIVYWM 337


>g1jmu.1 e.35.1.1 (A:,B:) Membrane penetration protein mu1 {Reovirus
           [TaxId: 10891]}
          Length = 666

 Score = 30.7 bits (69), Expect = 0.17
 Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 13/151 (8%)

Query: 87  LGLSTYTVIAIGCLTPIFLMKSGKPEKAEVSLRYYRGA-QYDVATELA-AIQKEIDAASE 144
            G  T     +  + P  L+ S  PE    SL         D A+++A AI+ + DA  +
Sbjct: 491 AGEVTVKGAVVSEVVPAELIGSYTPESLNASLPNDAARCMIDRASKIAEAIKIDDDAGPD 550

Query: 145 KKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTV------IFYSN--DIFKSAGSTL- 195
           + +  S     +  +  L    G+ IF     ++ +       F  +   I   A   L 
Sbjct: 551 EYSPNSVPIQGQLAISQLETGYGVRIFNPKGILSKIASRAMQAFIGDPSTIITQAAPVLS 610

Query: 196 DPSI-SAIIVGVVQCIVTG-LSNSGSDVSSI 224
           D +   A+  GV   + T  LS       S 
Sbjct: 611 DKNNWIALAQGVKTSLRTKSLSAGVKTAVSK 641


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 27.0 bits (58), Expect = 2.2
 Identities = 23/256 (8%), Positives = 63/256 (24%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
             +DK G +  +L      ++ +          +L     +  +  G             
Sbjct: 65  LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPA 124

Query: 61  AESSIRGALGSFFQMFLTLGVLYVYCLGLSTYTVIAIGCLTPIFLMKSGKPEKAEVSLRY 120
            E+ I          F    +       L    V  +  +   F+   G      +++  
Sbjct: 125 VEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184

Query: 121 YRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTV 180
           +       ++   A     + ++       +LF         +  +G+            
Sbjct: 185 FFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFA 244

Query: 181 IFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLISVIMFIVMFS 240
            F+++        T        +  ++   +   +    +        L++  +  V   
Sbjct: 245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304

Query: 241 LGFGPIPWMMVGELFA 256
                   + V  L  
Sbjct: 305 GSSFATSALEVVILKT 320


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.425 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 907,179
Number of extensions: 38709
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 11
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.1 bits)