BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7966
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FAQ|A Chain A, Raf-1 Cysteine Rich Domain, Nmr, 27 Structures
pdb|1FAR|A Chain A, Raf-1 Cysteine Rich Domain, Nmr, Minimized Average
Structure
Length = 52
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 83 HNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLC 128
HN R+TF +AFCD C K L +G C+TCG+KFH C+ VP +C
Sbjct: 4 HNFARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHCSTKVPTMC 49
>pdb|2L05|A Chain A, Solution Nmr Structure Of The Ras-Binding Domain Of
SerineTHREONINE- Protein Kinase B-Raf From Homo
Sapiens, Northeast Structural Genomics Consortium
Target Hr4694f
Length = 95
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVS--LQWDTDSD 60
++R LPN+QRT V R G T+ ++L KA+ +R L PE C Y G + WDTD
Sbjct: 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDIS 78
Query: 61 HLPTTEIRVEVQERFP 76
L E+ VEV E P
Sbjct: 79 WLTGEELHVEVLENVP 94
>pdb|3NY5|A Chain A, Crystal Structure Of The Rbd Domain Of
SerineTHREONINE-Protein Kinase B-Raf From Homo Sapiens.
Northeast Structural Genomics Consortium Target Hr4694f
pdb|3NY5|B Chain B, Crystal Structure Of The Rbd Domain Of
SerineTHREONINE-Protein Kinase B-Raf From Homo Sapiens.
Northeast Structural Genomics Consortium Target Hr4694f
pdb|3NY5|C Chain C, Crystal Structure Of The Rbd Domain Of
SerineTHREONINE-Protein Kinase B-Raf From Homo Sapiens.
Northeast Structural Genomics Consortium Target Hr4694f
pdb|3NY5|D Chain D, Crystal Structure Of The Rbd Domain Of
SerineTHREONINE-Protein Kinase B-Raf From Homo Sapiens.
Northeast Structural Genomics Consortium Target Hr4694f
Length = 96
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVS--LQWDTDSD 60
++R LPN+QRT V R G T+ ++L KA+ R L PE C Y G + WDTD
Sbjct: 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALXXRGLIPECCAVYRIQDGEKKPIGWDTDIS 74
Query: 61 HLPTTEIRVEVQERFP 76
L E+ VEV E P
Sbjct: 75 WLTGEELHVEVLENVP 90
>pdb|1C1Y|B Chain B, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 77
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 4 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDTD 58
+R LPN+QRT V++R G +L + L KA+K+R L+PE C + L W+TD
Sbjct: 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTD 63
Query: 59 SDHLPTTEIRVE 70
+ L E++V+
Sbjct: 64 AASLIGEELQVD 75
>pdb|1RFA|A Chain A, Nmr Solution Structure Of The Ras-Binding Domain Of
C-Raf-1
Length = 79
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 4 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDTD 58
+R LPN+QRT V++R G +L + L KA+K+R L+PE C + L W+TD
Sbjct: 5 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTD 64
Query: 59 SDHLPTTEIRVE 70
+ L E++V+
Sbjct: 65 AASLIGEELQVD 76
>pdb|1GUA|B Chain B, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
Length = 81
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 4 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDTD 58
+R LPN+QRT V++R G +L + L KA+K+R L+PE C + L W+TD
Sbjct: 8 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTD 67
Query: 59 SDHLPTTEIRVE 70
+ L E++V+
Sbjct: 68 AASLIGEELQVD 79
>pdb|1RRB|A Chain A, The Ras-Binding Domain Of Raf-1 From Rat, Nmr, 1
Structure
Length = 107
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 4 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDTD 58
+R LPN+QRT V++R G +L + L KA+K+R L+PE C + L W+TD
Sbjct: 21 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLQEHKGKKARLDWNTD 80
Query: 59 SDHLPTTEIRVE 70
+ L E++V+
Sbjct: 81 AASLIGEELQVD 92
>pdb|3KUD|B Chain B, Complex Of Ras-Gdp With Rafrbd(A85k)
Length = 81
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 4 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDTD 58
+R LPN+QRT V++R G +L + L K +K+R L+PE C + L W+TD
Sbjct: 8 IRVFLPNKQRTVVNVRNGMSLHDCLMKKLKVRGLQPECCAVFRLLHEHKGKKARLDWNTD 67
Query: 59 SDHLPTTEIRVE 70
+ L E++V+
Sbjct: 68 AASLIGEELQVD 79
>pdb|3KUC|B Chain B, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 81
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 4 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDTD 58
+R LPN+QRT V +R G +L + L K +K+R L+PE C + L W+TD
Sbjct: 8 IRVFLPNKQRTVVRVRNGMSLHDCLMKKLKVRGLQPECCAVFRLLHEHKGKKARLDWNTD 67
Query: 59 SDHLPTTEIRVE 70
+ L E++V+
Sbjct: 68 AASLIGEELQVD 79
>pdb|1WXM|A Chain A, Solution Structure Of The N-Terminal Ras-Binding Domain
(Rbd) In Human A-Raf Kinase
Length = 86
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 4 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG--VSLQWDTDSDH 61
++ LPN+QRT V +R G ++ ++L KA+K+R L + C Y G WDT
Sbjct: 10 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAP 69
Query: 62 LPTTEIRVEV 71
L E+ VEV
Sbjct: 70 LDGEELIVEV 79
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 41.2 bits (95), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 82 EHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLC---QVERIQ 134
+H T+ + FCD C LL+ G C TC H+ C + VP LC ER
Sbjct: 102 KHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRG 161
Query: 135 QTYYQ 139
+ Y Q
Sbjct: 162 RIYIQ 166
>pdb|2ELI|A Chain A, Solution Structure Of The Second Phorbol
EstersDIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN
Kinase C Alpha Type
Length = 85
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 82 EHNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLCQVERIQQ 135
+H T+ + FCD C LL+ G C TC H+ C + VP LC ++ ++
Sbjct: 17 KHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHTEK 74
>pdb|3NW0|A Chain A, Crystal Structure Of Mageg1 And Nse1 Complex
Length = 238
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 77 AAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRAC 120
A + +E I A+ C+ CH LL G C TCG + H C
Sbjct: 164 AILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPC 207
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 83 HNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLCQ--VERIQQT 136
HN TF +C+ C ++ G C CG H+ C+ VP CQ ++RI++
Sbjct: 213 HNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIKKV 272
Query: 137 Y 137
Y
Sbjct: 273 Y 273
>pdb|1TBN|A Chain A, Nmr Structure Of A Protein Kinase C-G Phorbol-Binding
Domain, Minimized Average Structure
pdb|1TBO|A Chain A, Nmr Structure Of A Protein Kinase C-g Phorbol-binding
Domain, 30 Structures
Length = 82
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 82 EHNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLCQVERIQQ 135
+H ++ + FCD C LL+ G C C HR C +VP LC V+ ++
Sbjct: 10 KHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPSLCGVDHTER 67
>pdb|2CT0|A Chain A, Solution Structure Of The Ring Domain Of The Non-Smc
Element 1 Protein
Length = 74
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 87 RRTFF-AIAFCDACHKLLFSGHLCRTCGFKFHRAC 120
R T+ A+ C+ CH LL G C TCG + H C
Sbjct: 8 RETYPDAVKICNICHSLLIQGQSCETCGIRMHLPC 42
>pdb|1PTQ|A Chain A, Protein Kinase C Delta Cys2 Domain
pdb|1PTR|A Chain A, Protein Kinase C Delta Cys2 Domain Complexed With Phorbol-
13-Acetate
Length = 50
Score = 30.8 bits (68), Expect = 0.43, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 83 HNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLC 128
H + + FCD C LL+ G C CG H C V LC
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50
>pdb|3UGD|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGD|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
Length = 65
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 83 HNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLCQ 129
H + + FCD C LL+ G C CG H C V LC+
Sbjct: 10 HRFKVHNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCE 60
>pdb|3UFF|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UFF|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
Length = 65
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 83 HNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLCQ 129
H + + FCD C LL+ G C CG H C V LC+
Sbjct: 10 HRFKVTNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCE 60
>pdb|3UEJ|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UEJ|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UGI|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGI|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGL|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGL|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
Length = 65
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 83 HNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLCQ 129
H + + FCD C LL+ G C CG H C V LC+
Sbjct: 10 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCE 60
>pdb|2ENZ|A Chain A, Solution Structure Of The Second C1 Domain From Human
Protein Kinase C Theta
Length = 65
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 77 AAINIEHNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLCQVE 131
I++ H + + FC+ C LL+ G C CG H C V LC +
Sbjct: 7 GKIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCGIN 65
>pdb|3UEY|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UEY|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
Length = 65
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 83 HNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLCQ 129
H + + FCD C LL+ G C CG H C V LC+
Sbjct: 10 HRFKVFNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCE 60
>pdb|2E73|A Chain A, Solution Structure Of The Phorbol EstersDIACYLGLYCEROL
Binding Domain Of Protein Kinase C Gamma
Length = 77
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 83 HNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLC 128
H T R F FC C ++ G C+ C F HR C+ V + C
Sbjct: 8 HKFTARFFKQPTFCSHCTDFIWGIGKQGLQCQVCSFVVHRRCHEFVTFEC 57
>pdb|2ENN|A Chain A, Solution Structure Of The First C1 Domain From Human
Protein Kinase C Theta
Length = 77
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 83 HNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRAC 120
H T F FC CH+ ++ G+ CR C H+ C
Sbjct: 24 HEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKC 65
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 26.9 bits (58), Expect = 7.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 17 HIRKGQTLLEALSKAMKLRNLK----PEMCTAYDSNTGVSLQWDTDSDHLPT-TEI 67
++ +G+ + + ++LR L P +C + N GV L D D+LP TEI
Sbjct: 240 YLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEI 295
>pdb|4FKD|A Chain A, Identification Of The Activator Binding Residues In The
Second Cysteine-rich Regulatory Domain Of Protein Kinase
C Theta
Length = 65
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 95 FCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLCQ 129
FC+ C LL+ G C CG H C V LC+
Sbjct: 22 FCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCE 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,327,619
Number of Sequences: 62578
Number of extensions: 183255
Number of successful extensions: 496
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 29
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)