Query psy7966
Match_columns 194
No_of_seqs 134 out of 312
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 23:25:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ny5_A Serine/threonine-protei 100.0 3.1E-38 1.1E-42 239.5 7.1 81 2-85 14-96 (96)
2 1wxm_A A-RAF proto-oncogene se 100.0 6.7E-37 2.3E-41 228.3 8.9 77 1-77 7-85 (86)
3 2l05_A Serine/threonine-protei 100.0 8.1E-37 2.8E-41 231.2 6.3 77 1-77 17-95 (95)
4 1rrb_A RAF-1 RBD, RAF proto-on 100.0 4.4E-36 1.5E-40 231.3 6.4 79 1-79 18-101 (107)
5 1c1y_B Proto-onkogene serine/t 100.0 7.1E-36 2.4E-40 218.9 6.6 72 1-72 1-77 (77)
6 1faq_A RAF-1; transferase, ser 99.7 4.4E-18 1.5E-22 113.2 2.4 49 82-130 3-51 (52)
7 1rfh_A RAS association (ralgds 99.7 6E-18 2E-22 116.8 2.5 56 74-129 2-59 (59)
8 1kbe_A Kinase suppressor of RA 99.7 3.5E-17 1.2E-21 110.2 2.9 46 80-126 2-47 (49)
9 2fnf_X Putative RAS effector N 99.6 9.8E-17 3.4E-21 114.9 3.8 51 79-129 20-72 (72)
10 2enz_A NPKC-theta, protein kin 99.6 1.5E-16 5E-21 111.0 3.8 51 80-130 10-64 (65)
11 1y8f_A UNC-13 homolog A, MUNC1 99.6 1.3E-16 4.5E-21 111.7 2.2 52 79-130 10-65 (66)
12 1ptq_A Protein kinase C delta 99.6 1.5E-16 5E-21 104.9 2.2 46 83-128 1-50 (50)
13 2db6_A SH3 and cysteine rich d 99.6 2.7E-16 9.4E-21 112.5 3.4 53 79-131 14-71 (74)
14 2enn_A NPKC-theta, protein kin 99.6 5.3E-16 1.8E-20 111.8 3.0 51 81-131 22-76 (77)
15 2yuu_A NPKC-delta, protein kin 99.6 8.3E-16 2.8E-20 111.9 3.4 53 81-133 16-72 (83)
16 2eli_A Protein kinase C alpha 99.6 1E-15 3.5E-20 112.2 3.6 53 80-132 15-71 (85)
17 3uej_A NPKC-delta, protein kin 99.6 4.8E-16 1.6E-20 108.2 1.7 50 82-131 9-62 (65)
18 4b6d_A RAC GTPase-activating p 99.5 8.3E-15 2.8E-19 102.3 2.7 56 76-131 2-60 (61)
19 2row_A RHO-associated protein 99.5 6.1E-15 2.1E-19 109.2 1.7 51 81-131 23-82 (84)
20 3pfq_A PKC-B, PKC-beta, protei 99.1 4.7E-12 1.6E-16 119.4 0.0 51 82-132 37-91 (674)
21 3cxl_A N-chimerin; SH2, RHO-GA 99.1 2.4E-11 8.3E-16 110.8 2.5 51 81-131 208-262 (463)
22 2vrw_B P95VAV, VAV1, proto-onc 99.0 9.6E-11 3.3E-15 103.8 3.2 50 81-131 345-398 (406)
23 3pfq_A PKC-B, PKC-beta, protei 99.0 8.6E-11 2.9E-15 110.9 3.0 50 81-130 101-154 (674)
24 3ky9_A Proto-oncogene VAV; cal 98.9 2.6E-10 8.9E-15 106.3 3.2 51 80-131 516-570 (587)
25 1r79_A Diacylglycerol kinase, 98.1 1.6E-06 5.3E-11 63.9 2.9 52 81-132 26-82 (84)
26 2al3_A TUG long isoform; TUG U 96.7 0.0017 5.9E-08 48.4 4.7 46 1-46 9-54 (90)
27 2ct0_A Non-SMC element 1 homol 93.6 0.02 6.7E-07 40.7 1.0 33 92-124 14-46 (74)
28 3nw0_A Non-structural maintena 93.1 0.024 8.3E-07 48.0 1.1 33 92-124 179-211 (238)
29 1wfy_A Regulator of G-protein 92.7 0.11 3.9E-06 39.6 4.1 71 3-73 18-89 (104)
30 1v5n_A PDI-like hypothetical p 90.1 0.11 3.8E-06 37.8 1.6 43 83-126 38-81 (89)
31 1xlq_A Putidaredoxin, PDX; [2F 84.3 1.1 3.7E-05 32.3 4.1 46 3-48 2-54 (106)
32 1wgr_A Growth factor receptor- 83.3 1.9 6.6E-05 32.2 5.1 40 2-41 10-49 (100)
33 1wju_A NEDD8 ultimate buster-1 83.0 2.7 9.4E-05 31.2 5.9 45 2-46 16-65 (100)
34 2bt6_A Adrenodoxin 1; rutheniu 82.5 1.6 5.4E-05 31.6 4.3 29 3-31 8-36 (108)
35 3lxf_A Ferredoxin; iron, iron- 81.7 1.6 5.4E-05 31.8 4.1 29 3-31 2-30 (104)
36 1uwm_A Ferredoxin VI, FDVI; el 81.0 1.5 5.1E-05 31.6 3.7 46 3-48 2-54 (106)
37 2kzr_A Ubiquitin thioesterase 80.6 3.7 0.00013 28.5 5.5 53 2-55 1-54 (86)
38 1twf_I B12.6, DNA-directed RNA 79.8 0.83 2.9E-05 34.8 2.1 28 91-118 2-38 (122)
39 3qt1_I DNA-directed RNA polyme 79.8 0.8 2.7E-05 35.8 2.0 27 90-116 21-56 (133)
40 2y5c_A Adrenodoxin-like protei 79.7 2.2 7.7E-05 30.9 4.3 45 3-47 7-57 (109)
41 1b9r_A Protein (terpredoxin); 79.7 1.3 4.6E-05 31.8 3.1 29 3-31 2-30 (105)
42 2wlb_A ETP1-FD, electron trans 79.1 2.5 8.6E-05 30.2 4.4 29 3-31 5-33 (103)
43 3ivf_A Talin-1; FERM domain, c 78.7 3.2 0.00011 36.0 5.7 38 2-39 86-123 (371)
44 3h0g_I DNA-directed RNA polyme 78.3 0.93 3.2E-05 34.1 1.9 25 93-117 4-37 (113)
45 1frr_A Ferredoxin I; electron 75.8 2.5 8.6E-05 29.5 3.5 28 3-31 3-30 (95)
46 1ef1_A Moesin; membrane, FERM 75.1 2.5 8.5E-05 35.2 3.9 37 2-39 2-38 (294)
47 1awd_A Ferredoxin; electron tr 74.2 2.6 8.8E-05 29.7 3.2 28 3-31 2-29 (94)
48 2j0j_A Focal adhesion kinase 1 74.0 4.2 0.00015 37.9 5.5 44 3-46 9-56 (656)
49 2daj_A KIAA0977 protein, COBL- 74.0 4 0.00014 30.3 4.2 66 3-68 12-78 (91)
50 3hui_A Ferredoxin; cytochrome 72.7 3.5 0.00012 31.4 3.9 29 3-31 23-51 (126)
51 1wri_A Ferredoxin II, ferredox 70.6 4.8 0.00016 28.3 3.9 41 3-47 3-50 (93)
52 3qij_A Protein 4.1; cytoskelet 70.5 5.8 0.0002 33.6 5.1 38 2-39 18-55 (296)
53 1a70_A Ferredoxin; iron-sulfur 70.0 4.2 0.00014 28.8 3.5 28 3-31 4-31 (97)
54 2kmm_A Guanosine-3',5'-BIS(dip 69.9 6.2 0.00021 26.0 4.2 27 2-30 1-27 (73)
55 1wff_A Riken cDNA 2810002D23 p 69.7 1.7 5.9E-05 31.9 1.4 36 93-129 25-62 (85)
56 1l5p_A Ferredoxin; [2Fe-2S] cl 69.2 2.1 7.3E-05 30.2 1.8 28 3-31 2-29 (93)
57 1h4r_A Merlin; FERM, neurofibr 68.7 5.6 0.00019 33.5 4.6 37 2-39 23-59 (314)
58 3au4_A Myosin-X; protein-prote 68.6 6.6 0.00022 36.0 5.4 45 2-46 217-263 (555)
59 1rm6_C 4-hydroxybenzoyl-COA re 68.3 2.4 8.2E-05 33.6 2.1 61 4-67 5-73 (161)
60 2al6_A Focal adhesion kinase 1 68.2 4.4 0.00015 35.5 4.0 36 3-38 9-48 (375)
61 1iue_A Ferredoxin; electron tr 65.1 6 0.00021 28.0 3.5 28 3-31 4-31 (98)
62 1zfo_A LAsp-1; LIM domain, zin 62.0 5.3 0.00018 23.3 2.3 28 93-120 3-30 (31)
63 3j20_Y 30S ribosomal protein S 62.0 3 0.0001 27.3 1.3 26 93-118 19-49 (50)
64 1frd_A Heterocyst [2Fe-2S] fer 60.1 11 0.00038 26.4 4.2 29 3-31 4-33 (98)
65 1t3q_A Quinoline 2-oxidoreduct 59.2 12 0.00042 29.5 4.7 63 2-67 10-80 (168)
66 1czp_A Ferredoxin I; [2Fe-2S] 58.6 12 0.00041 26.3 4.2 28 4-31 5-33 (98)
67 1jq4_A Methane monooxygenase c 57.3 13 0.00045 26.1 4.1 28 4-31 7-34 (98)
68 1wil_A KIAA1045 protein; ring 56.9 3.5 0.00012 30.5 1.0 33 93-125 15-48 (89)
69 3n9z_C Adrenodoxin; cytochrome 56.3 2.3 8E-05 32.2 0.0 28 4-31 8-35 (123)
70 1i7h_A Ferredoxin; 2Fe-2S,elec 55.9 9.7 0.00033 27.5 3.3 29 3-31 3-34 (111)
71 2kc2_A Talin-1, F1; FERM, adhe 55.7 22 0.00075 27.5 5.5 38 3-40 13-50 (128)
72 1o51_A Hypothetical protein TM 55.6 36 0.0012 25.4 6.6 64 3-73 15-82 (114)
73 1wfl_A Zinc finger protein 216 55.5 10 0.00034 27.2 3.2 23 93-116 25-48 (74)
74 3pvl_A Myosin VIIA isoform 1; 55.0 15 0.00052 35.0 5.4 38 2-39 264-301 (655)
75 1wf9_A NPL4 family protein; be 53.8 27 0.00091 25.2 5.4 39 2-41 8-47 (107)
76 1ndd_A NEDD8, protein (ubiquit 53.3 29 0.00098 22.2 5.1 43 2-44 1-43 (76)
77 4gmv_A RAS-associated and plec 52.9 25 0.00086 30.3 6.0 44 3-46 33-77 (281)
78 1wfh_A Zinc finger (AN1-like) 52.6 6.8 0.00023 27.3 1.9 23 93-116 15-38 (64)
79 3tca_A Amyloid beta A4 precurs 51.7 26 0.00088 28.4 5.6 39 2-40 35-73 (291)
80 2dcl_A Hypothetical UPF0166 pr 51.6 22 0.00074 27.3 4.8 65 2-73 10-78 (127)
81 2i1j_A Moesin; FERM, coiled-co 48.5 18 0.00061 34.0 4.6 37 2-39 5-41 (575)
82 3ah7_A [2Fe-2S]ferredoxin; [2F 48.2 15 0.00052 26.4 3.3 37 12-48 15-57 (113)
83 3p42_A Predicted protein; beta 47.0 8.5 0.00029 32.2 2.0 29 2-31 4-32 (236)
84 3mtn_B UBA80, ubcep1, ubiquiti 46.0 44 0.0015 21.9 5.2 44 2-45 4-47 (85)
85 1x4v_A Hypothetical protein LO 44.9 8.8 0.0003 26.4 1.5 23 94-116 13-37 (63)
86 2bs2_B Quinol-fumarate reducta 44.8 33 0.0011 27.7 5.2 63 12-76 24-98 (241)
87 2l32_A Small archaeal modifier 44.3 73 0.0025 21.7 7.4 57 4-69 3-59 (74)
88 3a9j_A Ubiquitin; protein comp 44.1 45 0.0015 21.2 4.9 43 2-44 1-43 (76)
89 1f62_A Transcription factor WS 43.8 8.8 0.0003 24.2 1.2 29 94-122 1-31 (51)
90 2dip_A Zinc finger SWIM domain 43.8 17 0.00059 26.7 3.0 29 94-122 32-63 (98)
91 1wev_A Riken cDNA 1110020M19; 43.3 11 0.00038 26.9 1.8 30 93-122 16-49 (88)
92 2dzi_A Ubiquitin-like protein 43.2 66 0.0022 20.8 5.8 44 2-45 8-51 (81)
93 1wfe_A Riken cDNA 2310008M20 p 43.0 9 0.00031 27.8 1.3 37 94-130 26-64 (86)
94 2wdq_B Succinate dehydrogenase 42.9 31 0.0011 27.7 4.8 65 12-77 21-99 (238)
95 3hk0_A Growth factor receptor- 42.8 26 0.00089 29.7 4.4 36 3-38 10-45 (256)
96 3k9o_B Ubiquitin, UBB+1; E2-25 42.7 45 0.0016 22.7 5.0 43 1-43 1-43 (96)
97 2yt5_A Metal-response element- 42.2 12 0.00042 24.7 1.8 29 94-122 7-39 (66)
98 3n3k_B Ubiquitin; hydrolase, p 41.4 37 0.0013 22.4 4.2 44 2-45 4-47 (85)
99 1znf_A 31ST zinc finger from X 41.3 8.8 0.0003 19.0 0.8 12 107-118 2-13 (27)
100 2kvh_A Zinc finger and BTB dom 41.0 8.9 0.0003 19.3 0.8 12 107-118 4-15 (27)
101 1vq8_Z 50S ribosomal protein L 40.8 10 0.00034 27.4 1.3 24 95-118 29-57 (83)
102 2d9h_A Zinc finger protein 692 40.1 11 0.00037 24.2 1.3 29 91-119 5-51 (78)
103 2h88_B Succinate dehydrogenase 40.1 57 0.0019 26.7 6.0 65 12-77 31-107 (252)
104 2faz_A Ubiquitin-like containi 39.0 60 0.002 21.1 5.0 45 1-45 2-48 (78)
105 1x4w_A Hypothetical protein FL 38.9 12 0.0004 26.3 1.3 23 93-116 15-41 (67)
106 3phx_B Ubiquitin-like protein 38.5 67 0.0023 21.0 5.2 42 2-43 5-46 (79)
107 1ard_A Yeast transcription fac 38.5 9.8 0.00033 19.1 0.7 12 107-118 3-14 (29)
108 1n62_A Carbon monoxide dehydro 38.4 23 0.00079 28.2 3.2 63 3-68 5-75 (166)
109 2adr_A ADR1; transcription reg 38.1 16 0.00054 22.0 1.8 12 106-117 30-41 (60)
110 2kvf_A Zinc finger and BTB dom 37.7 11 0.00036 19.0 0.8 12 107-118 4-15 (28)
111 2k4x_A 30S ribosomal protein S 37.6 13 0.00045 24.7 1.4 24 93-116 18-46 (55)
112 2puy_A PHD finger protein 21A; 37.5 18 0.00062 23.6 2.1 28 94-122 6-33 (60)
113 1bbo_A Human enhancer-binding 37.0 17 0.00058 21.6 1.8 11 107-117 30-40 (57)
114 1yx5_B Ubiquitin; proteasome, 36.9 71 0.0024 22.0 5.3 44 2-45 1-44 (98)
115 1vd4_A Transcription initiatio 36.7 15 0.00051 23.1 1.5 31 89-119 10-52 (62)
116 3dbh_I NEDD8; cell cycle, acti 36.5 78 0.0027 20.9 5.3 40 2-41 13-52 (88)
117 2co8_A NEDD9 interacting prote 36.3 23 0.00079 24.0 2.6 40 90-131 12-51 (82)
118 4gzn_C ZFP-57, zinc finger pro 36.0 13 0.00045 24.2 1.2 27 93-119 4-45 (60)
119 1x6e_A Zinc finger protein 24; 35.9 16 0.00056 23.1 1.7 28 91-118 12-54 (72)
120 2m0d_A Zinc finger and BTB dom 35.9 11 0.00039 18.8 0.7 13 107-119 4-16 (30)
121 1klr_A Zinc finger Y-chromosom 35.5 12 0.00043 18.6 0.8 12 107-118 3-14 (30)
122 2ku3_A Bromodomain-containing 35.4 19 0.00064 24.8 2.0 34 89-122 12-49 (71)
123 1rik_A E6APC1 peptide; E6-bind 35.2 14 0.00047 18.5 1.0 12 107-118 3-14 (29)
124 2jg6_A DNA-3-methyladenine gly 35.2 13 0.00043 30.8 1.2 22 17-38 134-155 (186)
125 2m0f_A Zinc finger and BTB dom 35.2 12 0.00042 18.6 0.8 12 107-118 3-14 (29)
126 2a20_A Regulating synaptic mem 35.2 19 0.00065 24.9 1.9 34 93-126 9-45 (62)
127 2yql_A PHD finger protein 21A; 35.0 20 0.00069 23.1 2.0 29 93-122 9-37 (56)
128 2lvu_A Zinc finger and BTB dom 41.0 8.2 0.00028 19.2 0.0 13 107-119 3-15 (26)
129 1paa_A Yeast transcription fac 34.7 13 0.00046 18.7 0.9 12 107-118 3-14 (30)
130 2kvg_A Zinc finger and BTB dom 34.6 11 0.00038 19.1 0.5 12 107-118 4-15 (27)
131 1dl6_A Transcription factor II 34.6 26 0.0009 23.2 2.5 35 89-123 7-47 (58)
132 2m0e_A Zinc finger and BTB dom 34.4 13 0.00045 18.4 0.8 12 107-118 3-14 (29)
133 2elm_A Zinc finger protein 406 34.2 13 0.00043 20.5 0.8 12 107-118 10-21 (37)
134 2ofk_A 3-methyladenine DNA gly 34.0 20 0.0007 29.4 2.3 21 18-38 135-155 (183)
135 2gmg_A Hypothetical protein PF 34.0 15 0.00051 27.8 1.3 19 22-40 10-28 (105)
136 2kwj_A Zinc finger protein DPF 33.3 20 0.00069 26.4 2.0 29 95-123 3-40 (114)
137 1wg2_A Zinc finger (AN1-like) 33.2 21 0.00073 24.7 1.9 23 93-116 15-38 (64)
138 2p6y_A Hypothetical protein VC 32.7 38 0.0013 25.8 3.5 27 14-40 5-31 (142)
139 3cf6_E RAP guanine nucleotide 32.7 1.2E+02 0.0042 28.7 7.7 47 2-48 353-401 (694)
140 2c5l_C Phosphoinositide-specif 32.7 49 0.0017 25.3 4.1 35 4-38 10-46 (117)
141 2elx_A Zinc finger protein 406 32.1 15 0.0005 19.4 0.8 13 107-119 8-20 (35)
142 2io1_B Small ubiquitin-related 32.0 72 0.0025 22.6 4.7 50 2-53 8-57 (94)
143 1sif_A Ubiquitin; hydrophobic 32.0 83 0.0028 21.4 4.9 45 1-45 9-53 (88)
144 2epq_A POZ-, at HOOK-, and zin 31.7 19 0.00063 20.6 1.3 10 93-102 10-19 (45)
145 1zbd_B Rabphilin-3A; G protein 31.6 21 0.00072 27.5 1.9 34 92-125 54-91 (134)
146 1wfp_A Zinc finger (AN1-like) 31.4 24 0.00081 25.2 2.0 23 93-116 25-48 (74)
147 1wyw_B Ubiquitin-like protein 31.4 1.2E+02 0.0042 20.9 5.9 45 2-46 22-66 (97)
148 3uk3_C Zinc finger protein 217 31.3 23 0.00077 21.0 1.7 12 107-118 33-44 (57)
149 1wxa_A Afadin, AF-6 protein; R 31.1 55 0.0019 24.4 4.1 40 1-40 9-52 (116)
150 1p7a_A BF3, BKLF, kruppel-like 31.0 15 0.00051 19.8 0.7 12 107-118 12-23 (37)
151 2lce_A B-cell lymphoma 6 prote 30.9 24 0.00082 22.3 1.8 26 93-118 17-57 (74)
152 1we6_A Splicing factor, putati 30.9 98 0.0034 22.0 5.4 42 2-43 28-73 (111)
153 1xwh_A Autoimmune regulator; P 30.7 24 0.00083 23.5 1.9 29 93-122 8-36 (66)
154 4dwf_A HLA-B-associated transc 30.6 1E+02 0.0035 20.6 5.2 41 2-42 6-46 (90)
155 1srk_A Zinc finger protein ZFP 30.4 16 0.00055 19.4 0.8 13 107-119 8-20 (35)
156 1x5w_A Zinc finger protein 64, 30.0 24 0.00081 22.1 1.7 27 92-118 8-49 (70)
157 1wys_A Riken cDNA 2310008M20 p 29.9 20 0.0007 25.4 1.4 37 94-130 15-53 (75)
158 1mm2_A MI2-beta; PHD, zinc fin 29.8 26 0.00089 23.1 1.9 28 94-122 10-37 (61)
159 2elv_A Zinc finger protein 406 29.8 17 0.00057 19.5 0.8 12 107-118 10-21 (36)
160 3o70_A PHD finger protein 13; 29.8 28 0.00097 23.6 2.1 33 92-125 18-52 (68)
161 2h6l_A Hypothetical protein; N 29.7 38 0.0013 25.8 3.1 27 13-39 11-37 (146)
162 2elp_A Zinc finger protein 406 29.7 19 0.00064 19.4 1.0 12 107-118 10-21 (37)
163 2dj7_A Actin-binding LIM prote 29.7 24 0.00081 24.0 1.7 32 90-121 12-43 (80)
164 1k8r_B Protein kinase BYR2; si 29.5 1.2E+02 0.004 22.9 5.6 47 4-52 3-50 (110)
165 2lvt_A Zinc finger and BTB dom 35.5 11 0.00039 19.0 0.0 12 107-118 3-14 (29)
166 2elq_A Zinc finger protein 406 29.3 18 0.00061 19.4 0.8 12 107-118 10-21 (36)
167 1we9_A PHD finger family prote 29.2 29 0.00098 22.7 2.0 34 92-125 5-41 (64)
168 2lv2_A Insulinoma-associated p 28.8 21 0.00072 24.8 1.3 26 94-119 29-69 (85)
169 1wh3_A 59 kDa 2'-5'-oligoadeny 28.7 1.2E+02 0.0042 19.9 5.3 44 2-45 8-51 (87)
170 2elt_A Zinc finger protein 406 28.5 18 0.00063 19.2 0.8 13 107-119 10-22 (36)
171 2ghf_A ZHX1, zinc fingers and 28.4 22 0.00074 25.5 1.4 37 83-119 8-63 (102)
172 1wgy_A RAP guanine nucleotide 28.3 1.2E+02 0.0042 22.6 5.6 51 2-52 10-61 (104)
173 2hj1_A Hypothetical protein; s 28.3 36 0.0012 24.9 2.6 24 8-31 21-45 (97)
174 3iz5_m 60S ribosomal protein L 28.1 25 0.00085 26.0 1.7 25 93-117 36-65 (92)
175 2eps_A POZ-, at HOOK-, and zin 28.0 27 0.00091 21.0 1.6 11 107-117 42-52 (54)
176 2dt4_A Hypothetical protein PH 28.0 45 0.0015 25.3 3.2 27 13-39 11-37 (143)
177 1krh_A Benzoate 1,2-dioxygenas 27.7 59 0.002 27.1 4.2 46 3-48 5-55 (338)
178 3v6c_B Ubiquitin; structural g 27.6 1.3E+02 0.0043 20.3 5.3 41 2-42 18-58 (91)
179 2uyz_B Small ubiquitin-related 27.6 1.3E+02 0.0044 19.5 5.9 45 2-46 4-48 (79)
180 2elr_A Zinc finger protein 406 27.4 19 0.00064 19.2 0.7 12 107-118 10-21 (36)
181 2l5u_A Chromodomain-helicase-D 27.2 22 0.00074 23.5 1.1 30 93-123 11-40 (61)
182 2l43_A N-teminal domain from h 27.2 20 0.0007 25.5 1.0 31 92-122 24-58 (88)
183 2kfq_A FP1; protein, de novo p 27.0 15 0.00052 19.5 0.2 12 107-118 3-14 (32)
184 2elo_A Zinc finger protein 406 27.0 17 0.00058 19.6 0.4 12 107-118 10-21 (37)
185 2ct1_A Transcriptional repress 26.9 29 0.001 22.0 1.7 30 89-118 11-57 (77)
186 2hx0_A Putative DNA-binding pr 26.5 48 0.0016 25.6 3.2 32 9-40 15-47 (154)
187 2els_A Zinc finger protein 406 26.4 21 0.00071 19.1 0.8 12 107-118 10-21 (36)
188 3vdz_A Ubiquitin-40S ribosomal 26.3 1.3E+02 0.0043 21.5 5.3 40 2-41 36-75 (111)
189 4hcn_B Polyubiquitin, ubiquiti 26.2 1.3E+02 0.0044 20.8 5.2 41 2-42 23-63 (98)
190 2lvr_A Zinc finger and BTB dom 32.0 14 0.00049 18.5 0.0 11 107-117 4-14 (30)
191 1x6h_A Transcriptional repress 25.8 31 0.0011 22.0 1.7 11 107-117 48-58 (86)
192 3jyw_9 60S ribosomal protein L 25.7 28 0.00097 24.6 1.5 25 93-117 26-55 (72)
193 2ojr_A Ubiquitin; lanthide-bin 25.6 1.6E+02 0.0054 20.9 5.7 42 2-43 36-77 (111)
194 1wm3_A Ubiquitin-like protein 25.5 1.5E+02 0.005 19.5 6.1 50 2-53 2-51 (72)
195 2gqj_A Zinc finger protein KIA 25.4 30 0.001 23.4 1.6 32 88-119 19-67 (98)
196 1rim_A E6APC2 peptide; E6-bind 25.1 21 0.00072 19.1 0.6 12 107-118 3-14 (33)
197 2daf_A FLJ35834 protein; hypot 25.0 1.4E+02 0.005 22.7 5.6 45 2-46 16-62 (118)
198 3a4r_A Nfatc2-interacting prot 24.9 1.6E+02 0.0056 19.8 5.5 42 2-43 8-50 (79)
199 1ffv_A CUTS, iron-sulfur prote 24.8 37 0.0013 26.9 2.2 62 4-68 6-75 (163)
200 3j21_i 50S ribosomal protein L 24.7 29 0.001 25.1 1.5 25 93-117 35-64 (83)
201 2cot_A Zinc finger protein 435 24.7 37 0.0013 21.6 1.9 27 92-118 17-58 (77)
202 1wem_A Death associated transc 24.7 25 0.00087 23.9 1.1 31 93-124 16-48 (76)
203 3gku_A Probable RNA-binding pr 24.3 41 0.0014 28.2 2.5 32 20-51 10-41 (225)
204 1v5o_A 1700011N24RIK protein; 24.3 1.7E+02 0.0059 20.3 5.6 42 2-43 8-53 (102)
205 2e5r_A Dystrobrevin alpha; ZZ 24.3 37 0.0013 22.8 1.9 29 93-121 11-42 (63)
206 2k16_A Transcription initiatio 23.9 24 0.00084 23.8 0.9 32 92-123 17-50 (75)
207 1njq_A Superman protein; zinc- 23.9 24 0.00082 19.4 0.7 12 107-118 7-18 (39)
208 2ysm_A Myeloid/lymphoid or mix 23.6 37 0.0013 24.5 1.9 28 95-122 56-85 (111)
209 1doi_A 2Fe-2S ferredoxin; halo 23.5 40 0.0014 25.4 2.1 23 8-31 33-55 (128)
210 3hvz_A Uncharacterized protein 23.5 1E+02 0.0036 21.3 4.2 58 3-68 7-64 (78)
211 3b08_A Polyubiquitin-C, ubiqui 23.5 1.3E+02 0.0043 21.7 4.9 40 2-41 1-40 (152)
212 2cu3_A Unknown function protei 23.2 1.1E+02 0.0039 19.7 4.1 47 16-68 9-56 (64)
213 3hwu_A Putative DNA-binding pr 23.1 94 0.0032 23.7 4.3 30 11-40 12-41 (147)
214 2epv_A Zinc finger protein 268 22.9 27 0.00092 19.8 0.8 12 107-118 13-24 (44)
215 3iuf_A Zinc finger protein UBI 22.9 25 0.00086 20.7 0.7 14 106-119 7-20 (48)
216 2epc_A Zinc finger protein 32; 22.8 27 0.00093 19.3 0.8 12 107-118 12-23 (42)
217 1j2o_A FLIN2, fusion of rhombo 22.8 37 0.0013 24.3 1.8 27 94-120 4-30 (114)
218 3izc_m 60S ribosomal protein R 22.7 35 0.0012 25.2 1.6 25 93-117 36-65 (92)
219 2dhz_A RAP guanine nucleotide 22.6 2.6E+02 0.0087 21.3 6.5 38 2-39 10-47 (120)
220 1ffk_W Ribosomal protein L37AE 22.4 31 0.0011 24.3 1.2 27 92-118 26-57 (73)
221 1pft_A TFIIB, PFTFIIBN; N-term 22.4 38 0.0013 21.2 1.6 27 95-121 7-39 (50)
222 1f0z_A THis protein; ubiquitin 22.2 86 0.0029 20.4 3.4 39 15-57 9-48 (66)
223 4eew_A Large proline-rich prot 22.2 1.8E+02 0.006 19.3 5.1 42 2-43 18-59 (88)
224 3htn_A Putative DNA binding pr 22.1 67 0.0023 24.7 3.2 29 11-39 15-43 (149)
225 3vr8_B Iron-sulfur subunit of 22.1 72 0.0024 27.3 3.7 65 12-77 55-131 (282)
226 2yu5_A Zinc finger protein 473 22.0 31 0.0011 19.3 1.0 13 107-119 13-25 (44)
227 3h0g_L DNA-directed RNA polyme 22.0 35 0.0012 23.4 1.4 23 94-116 22-48 (63)
228 3vqi_A ATG5; autophagy, E3-lik 22.0 33 0.0011 29.5 1.5 32 2-33 200-234 (274)
229 2en3_A ZFP-95, zinc finger pro 22.0 31 0.0011 19.6 1.0 13 107-119 13-25 (46)
230 3b08_A Polyubiquitin-C, ubiqui 21.8 1.5E+02 0.0052 21.3 5.0 44 2-45 77-120 (152)
231 1wz0_A Ubiquitin-like protein 21.7 1.8E+02 0.0062 21.0 5.4 56 2-59 25-81 (104)
232 2en2_A B-cell lymphoma 6 prote 21.5 29 0.00097 19.2 0.7 13 107-119 12-24 (42)
233 1fv5_A First zinc finger of U- 21.5 25 0.00084 20.8 0.4 15 106-120 8-22 (36)
234 2hj8_A Interferon-induced 17 k 21.4 1.9E+02 0.0065 19.4 5.9 44 2-45 5-48 (88)
235 1a7i_A QCRP2 (LIM1); LIM domai 21.4 32 0.0011 22.9 1.1 29 93-121 7-35 (81)
236 2ee8_A Protein ODD-skipped-rel 21.4 46 0.0016 22.2 1.9 10 107-116 74-83 (106)
237 1wo9_A HI-1, trypsin inhibitor 21.3 34 0.0012 20.8 1.1 16 175-190 2-17 (35)
238 2eos_A B-cell lymphoma 6 prote 21.2 30 0.001 19.2 0.8 12 107-118 12-23 (42)
239 2vpb_A Hpygo1, pygopus homolog 21.1 31 0.0011 23.3 1.0 31 94-124 9-43 (65)
240 2dmd_A Zinc finger protein 64, 21.1 46 0.0016 21.7 1.8 11 107-117 65-75 (96)
241 2pjh_A Protein NPL4, nuclear p 21.0 64 0.0022 22.2 2.6 47 2-49 5-51 (80)
242 3m7n_A Putative uncharacterize 20.7 46 0.0016 26.3 2.0 55 63-122 114-172 (179)
243 2l4z_A DNA endonuclease RBBP8, 20.7 34 0.0012 25.3 1.2 37 93-131 61-97 (123)
244 2yte_A Zinc finger protein 473 20.7 30 0.001 19.1 0.7 12 107-118 11-22 (42)
245 2zet_C Melanophilin; complex, 20.5 52 0.0018 25.9 2.3 34 92-125 67-104 (153)
246 2enf_A Zinc finger protein 347 20.4 32 0.0011 19.5 0.8 12 107-118 13-24 (46)
247 3o36_A Transcription intermedi 20.4 42 0.0014 26.2 1.7 27 94-121 5-31 (184)
248 2el5_A Zinc finger protein 268 20.3 32 0.0011 19.0 0.8 12 107-118 11-22 (42)
249 1wwt_A Threonyl-tRNA synthetas 20.3 1.3E+02 0.0044 20.3 4.1 25 3-29 11-36 (88)
250 2bwf_A Ubiquitin-like protein 20.2 1.5E+02 0.0053 18.7 4.3 43 2-45 5-47 (77)
251 3cw1_L U1 small nuclear ribonu 20.1 26 0.0009 25.0 0.4 10 95-104 5-14 (77)
252 2emb_A Zinc finger protein 473 20.0 32 0.0011 19.3 0.8 13 106-118 12-24 (44)
253 2ept_A Zinc finger protein 32; 20.0 33 0.0011 18.9 0.8 12 107-118 11-22 (41)
254 1wew_A DNA-binding family prot 20.0 36 0.0012 23.4 1.1 33 92-125 15-51 (78)
No 1
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=100.00 E-value=3.1e-38 Score=239.48 Aligned_cols=81 Identities=42% Similarity=0.680 Sum_probs=72.4
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCC--CcccCCCCCCCCCCcceeeeeehhcCCCC
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG--VSLQWDTDSDHLPTTEIRVEVQERFPAAI 79 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~--~~i~w~tD~~~L~~eel~V~~~~~~p~~~ 79 (194)
++|||||||||||+|+|||||||||||+||||+|||+||||+||+..++ ..|+||+|+++|+||||+||++|.||+.+
T Consensus 14 ~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~I~WdtDi~~L~geEL~Ve~ld~~pltt 93 (96)
T 3ny5_A 14 PIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLTGEELHVEVLENVPLTT 93 (96)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEECC---CEEECTTBBGGGGTTCEEEEEECCCCCBC-
T ss_pred CEEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEccCCCcCcccccccchhcccceEEehhhhcCCCcc
Confidence 6899999999999999999999999999999999999999999999764 44999999999999999999999999965
Q ss_pred Ccccee
Q psy7966 80 NIEHNI 85 (194)
Q Consensus 80 ~~~H~F 85 (194)
|||
T Consensus 94 ---HnF 96 (96)
T 3ny5_A 94 ---HNF 96 (96)
T ss_dssp ------
T ss_pred ---cCC
Confidence 988
No 2
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=100.00 E-value=6.7e-37 Score=228.25 Aligned_cols=77 Identities=35% Similarity=0.560 Sum_probs=72.7
Q ss_pred CceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCCC--cccCCCCCCCCCCcceeeeeehhcCC
Q psy7966 1 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGV--SLQWDTDSDHLPTTEIRVEVQERFPA 77 (194)
Q Consensus 1 ~~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~~--~i~w~tD~~~L~~eel~V~~~~~~p~ 77 (194)
+.+|||||||||||+|+|||||||||||+||||+|||+|+||+||+..++. .|+||+|+++|+|+||+||++|+||.
T Consensus 7 ~~~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~L~~eEL~Ve~ld~~~~ 85 (86)
T 1wxm_A 7 GGTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAPLDGEELIVEVLSGPSS 85 (86)
T ss_dssp SSEEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEEECSSSBSTTCSSCEEEEEECCSCSC
T ss_pred cceEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEcCCCCccccchhHhhhhccCcEEEEEEcccCCC
Confidence 468999999999999999999999999999999999999999999998774 49999999999999999999998764
No 3
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=8.1e-37 Score=231.24 Aligned_cols=77 Identities=42% Similarity=0.664 Sum_probs=72.9
Q ss_pred CceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCC--CcccCCCCCCCCCCcceeeeeehhcCC
Q psy7966 1 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG--VSLQWDTDSDHLPTTEIRVEVQERFPA 77 (194)
Q Consensus 1 ~~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~--~~i~w~tD~~~L~~eel~V~~~~~~p~ 77 (194)
+++|||||||||||+|+|||||||||||+||||+|||+||||+||+..++ ..||||+|+++|+|+||+||++|.||+
T Consensus 17 ~~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~L~~eEL~Ve~ld~~P~ 95 (95)
T 2l05_A 17 KPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLTGEELHVEVLENVPL 95 (95)
T ss_dssp SCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEEEETTEEEEECTTSBGGGGTTCEEEEEESCCSCC
T ss_pred ccEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEEcCCCCccccchhHhhhhccCcEEEEEEecCCCC
Confidence 36899999999999999999999999999999999999999999999877 449999999999999999999999885
No 4
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=100.00 E-value=4.4e-36 Score=231.27 Aligned_cols=79 Identities=37% Similarity=0.614 Sum_probs=67.3
Q ss_pred CceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecC---CC--CcccCCCCCCCCCCcceeeeeehhc
Q psy7966 1 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSN---TG--VSLQWDTDSDHLPTTEIRVEVQERF 75 (194)
Q Consensus 1 ~~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~---~~--~~i~w~tD~~~L~~eel~V~~~~~~ 75 (194)
+++|||||||||||+|+|||||||||||+||||+|||+||||+||+.. ++ ..|+||+|+++|+|+||+||++|+|
T Consensus 18 ~~~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~~~~i~WdtDi~~L~geEL~Ve~ld~~ 97 (107)
T 1rrb_A 18 SNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLQEHKGKKARLDWNTDAASLIGEELQVDFLKLA 97 (107)
T ss_dssp -CEEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEEECCCSCSSSCEECCTTCBHHHHTTSEEEEEEC---
T ss_pred cceEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeEEccccCCCcccccchhhhhhhccCcEEEEEEcccC
Confidence 468999999999999999999999999999999999999999999986 34 3499999999999999999999999
Q ss_pred CCCC
Q psy7966 76 PAAI 79 (194)
Q Consensus 76 p~~~ 79 (194)
|+-.
T Consensus 98 p~~~ 101 (107)
T 1rrb_A 98 AALE 101 (107)
T ss_dssp ----
T ss_pred cchh
Confidence 9954
No 5
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=100.00 E-value=7.1e-36 Score=218.90 Aligned_cols=72 Identities=39% Similarity=0.694 Sum_probs=67.2
Q ss_pred CceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecC---CC--CcccCCCCCCCCCCcceeeeee
Q psy7966 1 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSN---TG--VSLQWDTDSDHLPTTEIRVEVQ 72 (194)
Q Consensus 1 ~~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~---~~--~~i~w~tD~~~L~~eel~V~~~ 72 (194)
|++|||||||||||+|+|||||||||||+||||+|||+||||+||+.. ++ ..|+||+|+++|+|+||+||++
T Consensus 1 ~~~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~~~~~~~~~~~~~i~WdtD~~~L~~eEl~Ve~l 77 (77)
T 1c1y_B 1 SNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDFL 77 (77)
T ss_dssp CCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEEEGGGSSEEEEECTTSBGGGGTTCEEEEEEC
T ss_pred CceEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEeccCCCCCccccchhHhhhhccCceEEEEeC
Confidence 689999999999999999999999999999999999999999999985 34 3499999999999999999973
No 6
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=99.69 E-value=4.4e-18 Score=113.23 Aligned_cols=49 Identities=49% Similarity=1.160 Sum_probs=47.4
Q ss_pred cceeeccccCCccCCccccccccccccccccCceecccccccccccccc
Q psy7966 82 EHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLCQV 130 (194)
Q Consensus 82 ~H~F~~~Tf~~ptfCd~C~klL~QG~kCk~Cg~~~HkrC~~~Vp~~C~~ 130 (194)
.|+|..++|.+|||||+|+++||||++|++|++++|++|..+||..|.+
T Consensus 3 ~H~F~~~~~~~pt~C~~C~~~l~qG~~C~~C~~~~H~~C~~~v~~~C~~ 51 (52)
T 1faq_A 3 THNFARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHCSTKVPTMCVD 51 (52)
T ss_dssp CCCCEEECCSSCEECTTSSSEECSEEECTTTTCCBCSTTSSSSSSCCCC
T ss_pred CceeEeEeCCCCcCCCCcccccccCCEeCCCCCeEChhHHhhCcCcCCC
Confidence 5999999999999999999999999999999999999999999999975
No 7
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=99.69 E-value=6e-18 Score=116.75 Aligned_cols=56 Identities=21% Similarity=0.468 Sum_probs=52.3
Q ss_pred hcCCCCCccceeec-cccCCccCCcccccccc-ccccccccCceeccccccccccccc
Q psy7966 74 RFPAAINIEHNITR-RTFFAIAFCDACHKLLF-SGHLCRTCGFKFHRACNLAVPYLCQ 129 (194)
Q Consensus 74 ~~p~~~~~~H~F~~-~Tf~~ptfCd~C~klL~-QG~kCk~Cg~~~HkrC~~~Vp~~C~ 129 (194)
++|+....+|+|.. ++|.+|||||+|+++|| ||++|++|++++|++|.+.||..|.
T Consensus 2 ~~~~~~~~~H~F~~~~~~~~pt~C~~C~~~i~kqg~kC~~C~~~cH~kC~~~v~~~C~ 59 (59)
T 1rfh_A 2 RVLAERGEGHRFVELALRGGPGWCDLCGREVLRQALRCANCKFTCHSECRSLIQLDCR 59 (59)
T ss_dssp CCCCCCCSSCCCEECCCSSCCEECTTTCSEECSCCEECTTTSCEECHHHHTTCCCCCC
T ss_pred CcCCcCCCCCcCeeeeccCCCeEchhcchhhhhCccEeCCCCCeEehhhhhhCcCCCC
Confidence 36777778899999 99999999999999999 9999999999999999999999884
No 8
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=99.65 E-value=3.5e-17 Score=110.25 Aligned_cols=46 Identities=24% Similarity=0.757 Sum_probs=42.9
Q ss_pred CccceeeccccCCccCCccccccccccccccccCceecccccccccc
Q psy7966 80 NIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPY 126 (194)
Q Consensus 80 ~~~H~F~~~Tf~~ptfCd~C~klL~QG~kCk~Cg~~~HkrC~~~Vp~ 126 (194)
+++|+|..+||+. |+||+|+++||||++|++|++++|++|...||+
T Consensus 2 ~i~HrF~~~t~~~-t~C~~C~k~i~~G~kC~~Ck~~cH~kC~~~vp~ 47 (49)
T 1kbe_A 2 SVTHRFSTKSWLS-QVCNVCQKSMIFGVKCKHCRLKCHNKCTKEAPA 47 (49)
T ss_dssp CCCCCEEEECCSS-CCCSSSCCSSCCEEEETTTTEEESSSCTTTSCC
T ss_pred CCCcccCccCCCC-cCccccCceeECcCCCCCCCCccchhhcCcCCC
Confidence 3679999999995 999999999999999999999999999998874
No 9
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=99.63 E-value=9.8e-17 Score=114.94 Aligned_cols=51 Identities=20% Similarity=0.482 Sum_probs=48.0
Q ss_pred CCccceeec-cccCCccCCcccccccc-ccccccccCceeccccccccccccc
Q psy7966 79 INIEHNITR-RTFFAIAFCDACHKLLF-SGHLCRTCGFKFHRACNLAVPYLCQ 129 (194)
Q Consensus 79 ~~~~H~F~~-~Tf~~ptfCd~C~klL~-QG~kCk~Cg~~~HkrC~~~Vp~~C~ 129 (194)
...+|+|.. ++|.+|||||+|+++|+ |||+|++|++++|++|..+|+..|.
T Consensus 20 ~~~~H~F~~~~~~~~pt~C~~C~~~l~~qG~kC~~C~~~cHkkC~~~V~~~C~ 72 (72)
T 2fnf_X 20 RGEGHRFVELALRGGPGWCDLCGREVLRQALRCANCKFTCHSECRSLIQLDCR 72 (72)
T ss_dssp GCSSCCCEECCCCSSCCBCTTTSSBCSSCCEECTTSSCEECTGGGGGCCSCCC
T ss_pred cCCCCccceeecCCCCcchhhhhHHHHhCcCccCCCCCeechhhhccCcCCCC
Confidence 346799999 99999999999999999 9999999999999999999999984
No 10
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-16 Score=111.00 Aligned_cols=51 Identities=29% Similarity=0.804 Sum_probs=48.4
Q ss_pred CccceeeccccCCccCCcccccccc----ccccccccCceecccccccccccccc
Q psy7966 80 NIEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQV 130 (194)
Q Consensus 80 ~~~H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~~C~~ 130 (194)
.+.|+|..++|.+|||||+|+++|| |||+|++|++++|++|..+||..|+.
T Consensus 10 ~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~ 64 (65)
T 2enz_A 10 DMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCGI 64 (65)
T ss_dssp CCCCCEEECCCCSCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTTSCSCTTT
T ss_pred CCCCccEeEcCCCCcCchhcChhheecCCcccccCCCCCccCHhHHhhCcCcCCC
Confidence 3579999999999999999999999 99999999999999999999999973
No 11
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=99.61 E-value=1.3e-16 Score=111.67 Aligned_cols=52 Identities=31% Similarity=0.636 Sum_probs=46.3
Q ss_pred CCccceeeccccCCccCCcccccccc----ccccccccCceecccccccccccccc
Q psy7966 79 INIEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQV 130 (194)
Q Consensus 79 ~~~~H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~~C~~ 130 (194)
....|+|..++|..|||||+|+++|| |||+|++|++++|++|...|+..|..
T Consensus 10 ~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~ 65 (66)
T 1y8f_A 10 GGIQHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADCKL 65 (66)
T ss_dssp ---CCCEEEEECSSCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHHSCCCC--
T ss_pred CCCCcccEeeeCCCCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhhCcCcCCC
Confidence 34579999999999999999999999 99999999999999999999999975
No 12
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=99.61 E-value=1.5e-16 Score=104.87 Aligned_cols=46 Identities=35% Similarity=0.884 Sum_probs=44.7
Q ss_pred ceeeccccCCccCCcccccccc----ccccccccCceecccccccccccc
Q psy7966 83 HNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLC 128 (194)
Q Consensus 83 H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~~C 128 (194)
|+|..++|.+||+||+|+++|| ||++|++|++++|++|..+||..|
T Consensus 1 H~F~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~~~C 50 (50)
T 1ptq_A 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50 (50)
T ss_dssp CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCSCC
T ss_pred CCCEeecCCCCCCcCCCCceeeccCCccCEeCCCCCeECHHHhhhcCCCC
Confidence 8999999999999999999999 999999999999999999999887
No 13
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-16 Score=112.54 Aligned_cols=53 Identities=25% Similarity=0.578 Sum_probs=48.8
Q ss_pred CCccceeeccccCCccCCcccccccc----ccccccccCceecccccccccc-ccccc
Q psy7966 79 INIEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPY-LCQVE 131 (194)
Q Consensus 79 ~~~~H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~-~C~~~ 131 (194)
....|+|..++|.+|||||+|+++|| |||+|++|++++|++|..+|+. .|.+.
T Consensus 14 ~~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~~~C~~~ 71 (74)
T 2db6_A 14 NDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQRCSGP 71 (74)
T ss_dssp CSSBCCEEEEECSSCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGGGSSSBCCCC
T ss_pred cCCCCceEEeeCCCCcCchhcChhhccccCCccccCCCCCccChhHHhhCCCCcCCCC
Confidence 34579999999999999999999999 9999999999999999999996 58764
No 14
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.58 E-value=5.3e-16 Score=111.81 Aligned_cols=51 Identities=29% Similarity=0.624 Sum_probs=48.5
Q ss_pred ccceeeccccCCccCCcccccccc----ccccccccCceeccccccccccccccc
Q psy7966 81 IEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQVE 131 (194)
Q Consensus 81 ~~H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~~C~~~ 131 (194)
..|+|..++|..|||||+|+++|| |||+|++|++++|++|..+|+..|...
T Consensus 22 ~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~ 76 (77)
T 2enn_A 22 KCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKCTGS 76 (77)
T ss_dssp SSCEEEEECCSSCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSSCCSCCCCC
T ss_pred CCCccEEEcCCCCcCccccChhhccccccccCcCCCCCcCCHhHHhhCcCCCCCC
Confidence 459999999999999999999999 999999999999999999999999864
No 15
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.3e-16 Score=111.92 Aligned_cols=53 Identities=23% Similarity=0.531 Sum_probs=49.8
Q ss_pred ccceeeccccCCccCCcccccccc----ccccccccCceeccccccccccccccccc
Q psy7966 81 IEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQVERI 133 (194)
Q Consensus 81 ~~H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~~C~~~~~ 133 (194)
..|+|..++|..||||++|+++|| |||+|++|++++|++|...|+..|.....
T Consensus 16 ~~H~F~~~~~~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~v~~~C~~~~~ 72 (83)
T 2yuu_A 16 KNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRCTGTAA 72 (83)
T ss_dssp GGCCEEEECCSSCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGTCCSCCSSCCC
T ss_pred CCCceEeEeCCCCcChhhcChhhccccccccccCCcCCeeChhhhhhCCCcCCCccc
Confidence 359999999999999999999999 99999999999999999999999987653
No 16
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1e-15 Score=112.19 Aligned_cols=53 Identities=34% Similarity=0.836 Sum_probs=49.6
Q ss_pred CccceeeccccCCccCCcccccccc----ccccccccCceecccccccccccccccc
Q psy7966 80 NIEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQVER 132 (194)
Q Consensus 80 ~~~H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~~C~~~~ 132 (194)
...|+|..++|.+||||++|+++|| |||+|++|++++|++|...||..|....
T Consensus 15 ~~~H~F~~~~~~~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~~ 71 (85)
T 2eli_A 15 RSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDH 71 (85)
T ss_dssp TTSCCCEEECCSSCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTSCSCCCCCC
T ss_pred CCCcccEeeeCCCCcCCcccCccccccccCCCcCCCcCCccCHhHHhhcCCcCCcch
Confidence 3569999999999999999999999 9999999999999999999999998643
No 17
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=99.56 E-value=4.8e-16 Score=108.22 Aligned_cols=50 Identities=32% Similarity=0.808 Sum_probs=48.0
Q ss_pred cceeeccccCCccCCcccccccc----ccccccccCceeccccccccccccccc
Q psy7966 82 EHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQVE 131 (194)
Q Consensus 82 ~H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~~C~~~ 131 (194)
.|+|..++|..||||++|+++|| |||+|++|++++|++|..+||..|+..
T Consensus 9 ~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~~ 62 (65)
T 3uej_A 9 SHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCEFI 62 (65)
T ss_dssp ECCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSCSEEEEE
T ss_pred CceEEeEeCCCCCcccccChhhhccCceeeECCCCCCeEchhHhhhCCCcCCCc
Confidence 59999999999999999999999 999999999999999999999999864
No 18
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=99.49 E-value=8.3e-15 Score=102.26 Aligned_cols=56 Identities=23% Similarity=0.409 Sum_probs=50.6
Q ss_pred CCCCCccceeeccccCCccCCcccccccc---ccccccccCceeccccccccccccccc
Q psy7966 76 PAAINIEHNITRRTFFAIAFCDACHKLLF---SGHLCRTCGFKFHRACNLAVPYLCQVE 131 (194)
Q Consensus 76 p~~~~~~H~F~~~Tf~~ptfCd~C~klL~---QG~kCk~Cg~~~HkrC~~~Vp~~C~~~ 131 (194)
|+.....|+|..+||.+|++|++|++.|+ |||||++|++.+|++|.+.+|..|...
T Consensus 2 ~~~~~~~H~F~~kt~~~~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~~~~~C~p~ 60 (61)
T 4b6d_A 2 PLGSMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 60 (61)
T ss_dssp CEECBCCCCEEEEECCSCEECTTTCCEECTTCEEEEESSSSCEECGGGGGGSCSSCCCC
T ss_pred CCCcccceeEEeeeccCCcccccccCEEEEeeEeeECCCCCCeEchhHhhcCCCCCCCC
Confidence 34455789999999999999999999985 999999999999999999999999753
No 19
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.48 E-value=6.1e-15 Score=109.22 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=47.7
Q ss_pred ccceeeccccCCccCCcccccccc----c--cccccccCceecccccc---ccccccccc
Q psy7966 81 IEHNITRRTFFAIAFCDACHKLLF----S--GHLCRTCGFKFHRACNL---AVPYLCQVE 131 (194)
Q Consensus 81 ~~H~F~~~Tf~~ptfCd~C~klL~----Q--G~kCk~Cg~~~HkrC~~---~Vp~~C~~~ 131 (194)
..|.|..++|..|||||+|+++|| | ||+|+.|++++|++|.. .|++.|+..
T Consensus 23 ~~H~F~~~~~~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C~~~ 82 (84)
T 2row_A 23 KGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKVY 82 (84)
T ss_dssp TTEEEEEECCSSCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHHHTCTTCCCCSTT
T ss_pred CCcceEeEcCCCCcchhhcCHhhhccccCCCCCEecCCCCccchhHhCCccccccccCcC
Confidence 469999999999999999999999 6 99999999999999999 799999853
No 20
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.13 E-value=4.7e-12 Score=119.44 Aligned_cols=51 Identities=29% Similarity=0.772 Sum_probs=0.0
Q ss_pred cceeeccccCCccCCcccccccc----ccccccccCceecccccccccccccccc
Q psy7966 82 EHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQVER 132 (194)
Q Consensus 82 ~H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~~C~~~~ 132 (194)
.|.|..++|.+||||++|+++|| |||+|+.|++++|++|..+|+..|.+..
T Consensus 37 ~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~ 91 (674)
T 3pfq_A 37 NHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGAD 91 (674)
T ss_dssp -------------------------------------------------------
T ss_pred CceEEeeeCCCCCccccccccccccCCceeECCCCCCCcChhhcCcCcccCCCcc
Confidence 59999999999999999999999 9999999999999999999999997653
No 21
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=99.09 E-value=2.4e-11 Score=110.84 Aligned_cols=51 Identities=29% Similarity=0.757 Sum_probs=48.1
Q ss_pred ccceeeccccCCccCCcccccccc----ccccccccCceeccccccccccccccc
Q psy7966 81 IEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQVE 131 (194)
Q Consensus 81 ~~H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~~C~~~ 131 (194)
..|+|..+||..||+|++|+++|| ||++|++|++++|++|...+|..|...
T Consensus 208 ~~h~f~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~~vp~~C~~~ 262 (463)
T 3cxl_A 208 KIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPD 262 (463)
T ss_dssp BCCCEEEECCSSCCBCTTTCCBCCSSSCCEEEETTTCCEECHHHHTTSCSBCCGG
T ss_pred CCcceEEeecCCCCcchhhhhhhhhHHhcCeeccccCcccccccccccccccccc
Confidence 359999999999999999999998 999999999999999999999999763
No 22
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=99.01 E-value=9.6e-11 Score=103.76 Aligned_cols=50 Identities=30% Similarity=0.529 Sum_probs=45.2
Q ss_pred ccceeeccccCCccCCcccccccc----ccccccccCceeccccccccccccccc
Q psy7966 81 IEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQVE 131 (194)
Q Consensus 81 ~~H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~~C~~~ 131 (194)
..|+|..++|..||+|++|++++| ||++|+.||+++|++|..+||. |++.
T Consensus 345 ~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~~-C~~~ 398 (406)
T 2vrw_B 345 NGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPP-CGRH 398 (406)
T ss_dssp GGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSCC-C---
T ss_pred CCCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCCC-CCCC
Confidence 569999999999999999999998 9999999999999999999996 9765
No 23
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.01 E-value=8.6e-11 Score=110.85 Aligned_cols=50 Identities=36% Similarity=0.841 Sum_probs=47.4
Q ss_pred ccceeeccccCCccCCcccccccc----ccccccccCceecccccccccccccc
Q psy7966 81 IEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQV 130 (194)
Q Consensus 81 ~~H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~~C~~ 130 (194)
..|+|+.++|..|+|||+|+++|| |||+|..|++++|++|...||..|+.
T Consensus 101 ~~h~~~~~~~~~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~ 154 (674)
T 3pfq_A 101 SKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGT 154 (674)
T ss_dssp -CCCCCEECCSSCCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSSSCCCSSS
T ss_pred CCcceeecCCCCCCCCCccccccchhhcCccccccCCcchhhhhhhccCccccc
Confidence 469999999999999999999998 99999999999999999999999975
No 24
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=98.94 E-value=2.6e-10 Score=106.27 Aligned_cols=51 Identities=29% Similarity=0.542 Sum_probs=45.4
Q ss_pred CccceeeccccCCccCCcccccccc----ccccccccCceeccccccccccccccc
Q psy7966 80 NIEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQVE 131 (194)
Q Consensus 80 ~~~H~F~~~Tf~~ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~~Vp~~C~~~ 131 (194)
...|+|..++|.+||+|++|+++|| ||++|+.||+++|++|...|+ .|+..
T Consensus 516 ~~~H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v~-~C~~~ 570 (587)
T 3ky9_A 516 ANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVP-PCGRH 570 (587)
T ss_dssp GGGCCEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGSC-CC---
T ss_pred ccCCceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhcCC-CCCCC
Confidence 3579999999999999999999998 999999999999999999995 89765
No 25
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=98.08 E-value=1.6e-06 Score=63.94 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=47.6
Q ss_pred ccceeeccccCCccCCcccccccc-----ccccccccCceecccccccccccccccc
Q psy7966 81 IEHNITRRTFFAIAFCDACHKLLF-----SGHLCRTCGFKFHRACNLAVPYLCQVER 132 (194)
Q Consensus 81 ~~H~F~~~Tf~~ptfCd~C~klL~-----QG~kCk~Cg~~~HkrC~~~Vp~~C~~~~ 132 (194)
..|.|++-++...++|+.|++.++ +|++|.-|++.+|.+|.++++..|....
T Consensus 26 ~~H~WveGNl~~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~~~eC~lG~ 82 (84)
T 1r79_A 26 MPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCSGPS 82 (84)
T ss_dssp BCCCEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHCCSCBCCSC
T ss_pred ceeeEEccCCCCCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhccCcCCCCC
Confidence 469999999998999999999875 8999999999999999999999997653
No 26
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.72 E-value=0.0017 Score=48.44 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=41.0
Q ss_pred CceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEe
Q psy7966 1 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 46 (194)
Q Consensus 1 ~~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~ 46 (194)
|+.+-|..||.+|.+|.|-||++|.|.|.+|+++-||.++......
T Consensus 9 ~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh 54 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF 54 (90)
T ss_dssp -CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE
T ss_pred ccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEe
Confidence 4678899999999999999999999999999999999988766554
No 27
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.60 E-value=0.02 Score=40.75 Aligned_cols=33 Identities=39% Similarity=1.009 Sum_probs=29.6
Q ss_pred CccCCccccccccccccccccCceecccccccc
Q psy7966 92 AIAFCDACHKLLFSGHLCRTCGFKFHRACNLAV 124 (194)
Q Consensus 92 ~ptfCd~C~klL~QG~kCk~Cg~~~HkrC~~~V 124 (194)
....|..|.+.+.+|.+|..|+-.||..|..+.
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kW 46 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKY 46 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHH
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHH
Confidence 357899999999999999999999999998754
No 28
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.14 E-value=0.024 Score=47.96 Aligned_cols=33 Identities=39% Similarity=1.009 Sum_probs=30.0
Q ss_pred CccCCccccccccccccccccCceecccccccc
Q psy7966 92 AIAFCDACHKLLFSGHLCRTCGFKFHRACNLAV 124 (194)
Q Consensus 92 ~ptfCd~C~klL~QG~kCk~Cg~~~HkrC~~~V 124 (194)
....|..|.+.+.+|.+|..|+..+|..|..+.
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKY 211 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHH
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHH
Confidence 478899999999999999999999999998653
No 29
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=92.68 E-value=0.11 Score=39.61 Aligned_cols=71 Identities=8% Similarity=0.149 Sum_probs=62.5
Q ss_pred eEEEEc-CCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCCCcccCCCCCCCCCCcceeeeeeh
Q psy7966 3 LLRAQL-PNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVQE 73 (194)
Q Consensus 3 ~irv~L-Pn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~~~i~w~tD~~~L~~eel~V~~~~ 73 (194)
+.++-| |+.---.|-.+|+.+|.|||.=.|.+-||..+.-.|...+....+|..+.++.+.|.-|.++...
T Consensus 18 ~F~L~l~p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~ldgqrl~Le~~~ 89 (104)
T 1wfy_A 18 TFQLELVGLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSSVASQTLVLDTPP 89 (104)
T ss_dssp EEEEEESSSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGGSSSSCEEECCCS
T ss_pred EEEEeccCCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhhhcCcEEEEeeCC
Confidence 456667 88855568889999999999999999999999988888888888999999999999999998654
No 30
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=90.15 E-value=0.11 Score=37.80 Aligned_cols=43 Identities=23% Similarity=0.487 Sum_probs=31.6
Q ss_pred ceeeccccCCccCCcccccccc-ccccccccCceecccccccccc
Q psy7966 83 HNITRRTFFAIAFCDACHKLLF-SGHLCRTCGFKFHRACNLAVPY 126 (194)
Q Consensus 83 H~F~~~Tf~~ptfCd~C~klL~-QG~kCk~Cg~~~HkrC~~~Vp~ 126 (194)
|.+... +..+-.||.|++... --|+|..|+|..|.+|+..-+.
T Consensus 38 H~L~L~-~~~~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~~ 81 (89)
T 1v5n_A 38 HELELT-RVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDT 81 (89)
T ss_dssp SCEEEE-CCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSSC
T ss_pred CccEEe-eCCCeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCCc
Confidence 555543 233567999999754 4589999999999999865443
No 31
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=84.29 E-value=1.1 Score=32.31 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=32.4
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHh-------cCCCCCccEEEecC
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKL-------RNLKPEMCTAYDSN 48 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~-------R~L~~~~C~Vy~~~ 48 (194)
.|.+..|++++.+|+|.+|.||.||+.++=-. ..-..-.|.|+...
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~ 54 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNE 54 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECC
Confidence 46666799999999999999999988654211 11233467887764
No 32
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=83.29 E-value=1.9 Score=32.24 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCc
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM 41 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~ 41 (194)
..|++|..++--.+|.|-++||.+|++.....+.++..+.
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~ 49 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDE 49 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCC
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCC
Confidence 3689999999999999999999999999998888876554
No 33
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.04 E-value=2.7 Score=31.17 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=37.8
Q ss_pred ceEEEEcCC----CCeeeEEeecCCcHHHHHHHHHHhcCCCCCc-cEEEe
Q psy7966 2 ILLRAQLPN----QQRTSVHIRKGQTLLEALSKAMKLRNLKPEM-CTAYD 46 (194)
Q Consensus 2 ~~irv~LPn----~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~-C~Vy~ 46 (194)
.+|.|++|| ++.-.|+|.|..|+.+.=.|.-.+-|+.++. .-+|.
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 369999999 7788999999999999888888999998766 44454
No 34
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=82.46 E-value=1.6 Score=31.60 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=23.5
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
.|.+..|+++..+|++.+|.||.+|+..+
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa~~~ 36 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVVVQN 36 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHT
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHc
Confidence 35555599988899999999999988653
No 35
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=81.73 E-value=1.6 Score=31.81 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=25.5
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
.|.+.-|++++.+|++.+|.||.+|+..+
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~ 30 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRDA 30 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHHT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHc
Confidence 47788899999999999999999988764
No 36
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=80.95 E-value=1.5 Score=31.56 Aligned_cols=46 Identities=22% Similarity=0.172 Sum_probs=31.4
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHh-------cCCCCCccEEEecC
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKL-------RNLKPEMCTAYDSN 48 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~-------R~L~~~~C~Vy~~~ 48 (194)
.|.+..|++++.+|+|.+|.||-||+.++=-. +.-..-.|.|+...
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~ 54 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDP 54 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECC
Confidence 46666799999999999999999987654111 11233357777653
No 37
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=80.55 E-value=3.7 Score=28.45 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=38.3
Q ss_pred ceEEEEcCCCCeeeEE-eecCCcHHHHHHHHHHhcCCCCCccEEEecCCCCcccC
Q psy7966 2 ILLRAQLPNQQRTSVH-IRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQW 55 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~-v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~~~i~w 55 (194)
|.|||-.++++++ |+ +-+..|+.|-..+.-++.|+.++.=......++..++.
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l 54 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDL 54 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCccccc
Confidence 5799999999765 77 99999999988888888898765433332333444443
No 38
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=79.85 E-value=0.83 Score=34.80 Aligned_cols=28 Identities=29% Similarity=0.772 Sum_probs=22.8
Q ss_pred CCccCCcccccccc--c-------cccccccCceecc
Q psy7966 91 FAIAFCDACHKLLF--S-------GHLCRTCGFKFHR 118 (194)
Q Consensus 91 ~~ptfCd~C~klL~--Q-------G~kCk~Cg~~~Hk 118 (194)
..+.||..|+.+|. . -|.|+.|+|....
T Consensus 2 ~~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~ 38 (122)
T 1twf_I 2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEA 38 (122)
T ss_dssp CCCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEEC
T ss_pred CCCCcccccCccCcccccCcCCCCEEECCcCCCeeec
Confidence 45789999999998 2 2899999997753
No 39
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=79.84 E-value=0.8 Score=35.78 Aligned_cols=27 Identities=30% Similarity=0.878 Sum_probs=21.8
Q ss_pred cCCccCCcccccccc--cc-------ccccccCcee
Q psy7966 90 FFAIAFCDACHKLLF--SG-------HLCRTCGFKF 116 (194)
Q Consensus 90 f~~ptfCd~C~klL~--QG-------~kCk~Cg~~~ 116 (194)
.....||..|+.+|+ .+ |.|+.|+|..
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 345789999999998 22 9999999965
No 40
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=79.72 E-value=2.2 Score=30.90 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=30.2
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHh-----cC-CCCCccEEEec
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKL-----RN-LKPEMCTAYDS 47 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~-----R~-L~~~~C~Vy~~ 47 (194)
.|.+..|+++..+|++.+|.||.+|+..+=-. ++ -..-.|.|+..
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~ 57 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVS 57 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEEC
Confidence 35555699988899999999999987643100 12 23445777764
No 41
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=79.67 E-value=1.3 Score=31.78 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=24.2
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
.|++..|++++.+|++.+|.||.+|+.++
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~~~ 30 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEVATQN 30 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHc
Confidence 45665799999999999999999988754
No 42
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=79.13 E-value=2.5 Score=30.18 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=23.6
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
.|++.-||++..+|++.+|.||-||+..+
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~~~ 33 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAHAN 33 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHHHT
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHc
Confidence 34554489998999999999999998764
No 43
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=78.71 E-value=3.2 Score=36.01 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=35.1
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCC
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP 39 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~ 39 (194)
..++|+|||++.-.|+|.+..|.+|.+.+..++-||.-
T Consensus 86 ~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e 123 (371)
T 3ivf_A 86 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN 123 (371)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSC
T ss_pred eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 46899999999999999999999999999999999853
No 44
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=78.34 E-value=0.93 Score=34.09 Aligned_cols=25 Identities=24% Similarity=0.833 Sum_probs=21.0
Q ss_pred ccCCcccccccc--c-------cccccccCceec
Q psy7966 93 IAFCDACHKLLF--S-------GHLCRTCGFKFH 117 (194)
Q Consensus 93 ptfCd~C~klL~--Q-------G~kCk~Cg~~~H 117 (194)
..||..|+.+|. . -|.|+.|+|...
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 579999999997 2 299999999764
No 45
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=75.78 E-value=2.5 Score=29.53 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=22.9
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
.|.+..||+ ..+|+|.+|.||-||+.++
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~~ 30 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAAEEA 30 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHHHHT
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHHHHc
Confidence 456666888 6789999999999998765
No 46
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=75.13 E-value=2.5 Score=35.19 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=33.3
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCC
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP 39 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~ 39 (194)
+.++|||||++.+ |+|.+-.|.+|.+.+.+++-||.-
T Consensus 2 i~~~V~l~d~~~~-~~v~~~tt~~el~~~v~~~l~L~e 38 (294)
T 1ef1_A 2 ISVRVTTMDAELE-FAIQPNTTGKQLFDQVVKTIGLRE 38 (294)
T ss_dssp EEEEEEETTEEEE-EEECTTCBHHHHHHHHHHHHTCCC
T ss_pred EEEEEEECCceEE-EEECCCCcHHHHHHHHHHHcCCCC
Confidence 5799999999765 999999999999999999999864
No 47
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=74.23 E-value=2.6 Score=29.70 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=23.0
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
.|.+..|++ ..+|+|.+|.||-||+.++
T Consensus 2 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~~ 29 (94)
T 1awd_A 2 KVTLKTPSG-EETIECPEDTYILDAAEEA 29 (94)
T ss_dssp EEEEEETTE-EEEEECCTTSCHHHHHHHT
T ss_pred EEEEEeCCC-cEEEEECCCCcHHHHHHHc
Confidence 466777888 6779999999999998765
No 48
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=73.99 E-value=4.2 Score=37.91 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=37.4
Q ss_pred eEEEEcCCCC----eeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEe
Q psy7966 3 LLRAQLPNQQ----RTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 46 (194)
Q Consensus 3 ~irv~LPn~Q----rT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~ 46 (194)
+++|||||.| .-.|.+-++.|++|.+.+.+++-+|.-..+---+
T Consensus 9 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~ 56 (656)
T 2j0j_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLR 56 (656)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEE
T ss_pred heEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEE
Confidence 5789999999 9999999999999999999999888554454444
No 49
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.96 E-value=4 Score=30.33 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=47.9
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecC-CCCcccCCCCCCCCCCccee
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSN-TGVSLQWDTDSDHLPTTEIR 68 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~-~~~~i~w~tD~~~L~~eel~ 68 (194)
.+-|++|-.|.|+|-|-|-++|.+-|--.+.+-++.|+-=+.-+.. ++..+|.+.-+..|.=.||.
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirELy 78 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRELY 78 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSEEE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhhhh
Confidence 4678999999999999999999999999999999999976555543 22324433333333334443
No 50
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=72.74 E-value=3.5 Score=31.37 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=23.6
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
.|.+.-|++++.+|++.+|.||.||+..+
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~ 51 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAAIRN 51 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHc
Confidence 35555599999999999999999988654
No 51
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=70.59 E-value=4.8 Score=28.28 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=29.7
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCC-------CCCccEEEec
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL-------KPEMCTAYDS 47 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L-------~~~~C~Vy~~ 47 (194)
.|.+..|++ ..+|+|.+|.||-||+..+= .+ ....|.|...
T Consensus 3 ~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g---~i~~~C~~G~Cg~C~v~v~ 50 (93)
T 1wri_A 3 KVTLKTPDG-DITFDVEPGERLIDIGSEKA---DLPLSCQAGACSTCLGKIV 50 (93)
T ss_dssp EEEEEETTE-EEEEEECTTSCHHHHHHHHS---CCCCSSSSSSSSTTEEEEE
T ss_pred EEEEEECCC-eEEEEECCCCcHHHHHHHCc---CCCCCCCCCCCCCCEEEEe
Confidence 466667877 67899999999999998772 33 2335777753
No 52
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=70.55 E-value=5.8 Score=33.58 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=35.2
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCC
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP 39 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~ 39 (194)
+.++|+|||++.-.++|.+-.|.+|.+....++-||.-
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e 55 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE 55 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSS
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 57899999999999999999999999999999999863
No 53
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=70.04 E-value=4.2 Score=28.81 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=22.4
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
.|.+..|++ ..+|+|.+|.||-||+..+
T Consensus 4 ~v~~~~~~~-~~~~~~~~g~tlL~a~~~~ 31 (97)
T 1a70_A 4 KVTLVTPTG-NVEFQCPDDVYILDAAEEE 31 (97)
T ss_dssp EEEEEETTE-EEEEEEETTSCHHHHHHHT
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHc
Confidence 455666777 6789999999999998764
No 54
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=69.90 E-value=6.2 Score=26.00 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHH
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSK 30 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~K 30 (194)
|.|.+.|||++ ..++..|.|+.|.+..
T Consensus 1 m~i~i~~p~g~--~~~~~~g~T~~dla~~ 27 (73)
T 2kmm_A 1 MEVMVFTPKGE--IKRLPQGATALDFAYS 27 (73)
T ss_dssp CCEEEECTTCC--EEEECTTCBHHHHHHH
T ss_pred CeEEEEcCCCC--EEEcCCCCcHHHHHHH
Confidence 46889999985 4788899999996654
No 55
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=69.72 E-value=1.7 Score=31.91 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=23.9
Q ss_pred ccCCcccccccc--ccccccccCceeccccccccccccc
Q psy7966 93 IAFCDACHKLLF--SGHLCRTCGFKFHRACNLAVPYLCQ 129 (194)
Q Consensus 93 ptfCd~C~klL~--QG~kCk~Cg~~~HkrC~~~Vp~~C~ 129 (194)
+.-|..|++-+. +||+|+ ||..|=-+-.-.-.-.|.
T Consensus 25 ~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~ 62 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHGCN 62 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCC
T ss_pred CccchhhCCeecccCCeEcC-CCCEecccCCCccCCCCc
Confidence 467999998653 699998 998884333333334454
No 56
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=69.24 E-value=2.1 Score=30.21 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=22.8
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
.|. +.+|++..+|++.+|.||.||+.++
T Consensus 2 ~v~-i~~~g~~~~~~~~~g~tll~a~~~~ 29 (93)
T 1l5p_A 2 TIT-AVKGGVKKQLKFEDDQTLFTVLTEA 29 (93)
T ss_dssp EEE-EEETTEEEEEECCTTEEHHHHHHTT
T ss_pred eEE-EEeCCcEEEEEECCCChHHHHHHHc
Confidence 455 4678888899999999999987754
No 57
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=68.67 E-value=5.6 Score=33.47 Aligned_cols=37 Identities=5% Similarity=-0.015 Sum_probs=32.6
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCC
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP 39 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~ 39 (194)
+.++|||||++.+ |+|.+..|.+|.+.+.+++=||.-
T Consensus 23 ~~~~V~lldg~~~-~~v~~~t~~~el~~~v~~~l~L~e 59 (314)
T 1h4r_A 23 FTVRIVTMDAEME-FNCEMKWKGKDLFDLVCRTLGLRE 59 (314)
T ss_dssp EEEEEECSSCEEE-EEEETTCBHHHHHHHHHHHHTCCC
T ss_pred eEEEEEeCCceEE-EEeCCCCcHHHHHHHHHHHhCCCC
Confidence 4689999999655 999999999999999999988863
No 58
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=68.62 E-value=6.6 Score=35.98 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=38.9
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCC--CccEEEe
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP--EMCTAYD 46 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~--~~C~Vy~ 46 (194)
+.++|||||++.-+|+|.+..|.+|.+....++-||.. +.-+.|.
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 46899999999999999999999999999999999974 4445554
No 59
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=68.34 E-value=2.4 Score=33.61 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=39.9
Q ss_pred EEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCC-------CCCccEEEecCCCCc-ccCCCCCCCCCCcce
Q psy7966 4 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL-------KPEMCTAYDSNTGVS-LQWDTDSDHLPTTEI 67 (194)
Q Consensus 4 irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L-------~~~~C~Vy~~~~~~~-i~w~tD~~~L~~eel 67 (194)
|++.+ |++.-.|+|.||+||-|+|...+...+. ..-.|+|...+ .. .+.-+.+..+.|.++
T Consensus 5 i~~~v-NG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~vdG--~~v~sC~~~~~~~~G~~v 73 (161)
T 1rm6_C 5 LRLTL-NGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDD--RPRLACSTLAHQVAGKKV 73 (161)
T ss_dssp EEEEE-TTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEETT--EEEEGGGSBGGGGTTSEE
T ss_pred EEEEE-CCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEECC--cEEechHHHHHHhCCceE
Confidence 44444 7878888999999999999877533332 23347888743 33 356666666666554
No 60
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=68.18 E-value=4.4 Score=35.49 Aligned_cols=36 Identities=6% Similarity=0.092 Sum_probs=33.3
Q ss_pred eEEEEcCCCC----eeeEEeecCCcHHHHHHHHHHhcCCC
Q psy7966 3 LLRAQLPNQQ----RTSVHIRKGQTLLEALSKAMKLRNLK 38 (194)
Q Consensus 3 ~irv~LPn~Q----rT~V~v~~G~tl~~aL~Kalk~R~L~ 38 (194)
+++|||||+| .-.|.+-+..|.+|.+..++++=||.
T Consensus 9 ~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~ 48 (375)
T 2al6_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVK 48 (375)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCS
T ss_pred eEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 5789999999 88999999999999999999999983
No 61
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=65.13 E-value=6 Score=28.01 Aligned_cols=28 Identities=7% Similarity=0.190 Sum_probs=22.1
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
.|.+..|++ ..+|+|.+|.||-||+.++
T Consensus 4 ~v~~~~~~~-~~~~~~~~g~tlL~a~~~~ 31 (98)
T 1iue_A 4 NITLRTNDG-EKKIECNEDEYILDASERQ 31 (98)
T ss_dssp EEEEEETTE-EEEEEEETTSCHHHHHHHT
T ss_pred EEEEEeCCC-eEEEEeCCCCcHHHHHHHc
Confidence 456666766 6679999999999998765
No 62
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=62.02 E-value=5.3 Score=23.28 Aligned_cols=28 Identities=21% Similarity=0.520 Sum_probs=22.7
Q ss_pred ccCCccccccccccccccccCceecccc
Q psy7966 93 IAFCDACHKLLFSGHLCRTCGFKFHRAC 120 (194)
Q Consensus 93 ptfCd~C~klL~QG~kCk~Cg~~~HkrC 120 (194)
..-|..|++.++..-+-..=|..+|+.|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred CCcCCccCCEEecceeEEECCeEecccC
Confidence 3569999999987766667788999988
No 63
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.00 E-value=3 Score=27.32 Aligned_cols=26 Identities=23% Similarity=0.710 Sum_probs=19.9
Q ss_pred ccCCccccc--ccc---ccccccccCceecc
Q psy7966 93 IAFCDACHK--LLF---SGHLCRTCGFKFHR 118 (194)
Q Consensus 93 ptfCd~C~k--lL~---QG~kCk~Cg~~~Hk 118 (194)
-.||..|+. ++. ..+.|..||+...+
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTEWK 49 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEEEC
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEEEC
Confidence 467999998 443 56899999998754
No 64
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=60.05 E-value=11 Score=26.39 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=20.9
Q ss_pred eEEEEcCCCC-eeeEEeecCCcHHHHHHHH
Q psy7966 3 LLRAQLPNQQ-RTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 3 ~irv~LPn~Q-rT~V~v~~G~tl~~aL~Ka 31 (194)
.|++..|++. -.+|+|.+|.||-||+.++
T Consensus 4 ~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~ 33 (98)
T 1frd_A 4 QVRLINKKQDIDTTIEIDEETTILDGAEEN 33 (98)
T ss_dssp EEEEEETTTTEEEEEEEETTSCHHHHHHHT
T ss_pred EEEEEeCCCCCCEEEEeCCCCcHHHHHHHc
Confidence 3455556642 5679999999999988764
No 65
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=59.18 E-value=12 Score=29.47 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=39.3
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCC-------CCCccEEEecCCCCc-ccCCCCCCCCCCcce
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL-------KPEMCTAYDSNTGVS-LQWDTDSDHLPTTEI 67 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L-------~~~~C~Vy~~~~~~~-i~w~tD~~~L~~eel 67 (194)
+.|++.| |++...|+|.||+||-|||...+...+. ..-.|.|-.. |.. .+.-+.+..+.|.++
T Consensus 10 m~i~~~i-ng~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~vd--G~~v~sC~~~~~~~~G~~v 80 (168)
T 1t3q_A 10 MRISATI-NGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILID--GAPMRSCLTLAVQAEGCSI 80 (168)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEET--TEEEEGGGSBGGGGTTCEE
T ss_pred ceEEEEE-CCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEEC--CCEeechhhHHHHhCCCeE
Confidence 3456666 6666778999999999999875422221 1234777773 444 355566655555544
No 66
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=58.61 E-value=12 Score=26.32 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=20.4
Q ss_pred EEEEcCCCC-eeeEEeecCCcHHHHHHHH
Q psy7966 4 LRAQLPNQQ-RTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 4 irv~LPn~Q-rT~V~v~~G~tl~~aL~Ka 31 (194)
|++..|++. ..+|++.+|.||-||+.++
T Consensus 5 V~~~~~~~~~~~~~~~~~g~tlL~a~~~~ 33 (98)
T 1czp_A 5 VTLINEAEGTKHEIEVPDDEYILDAAEEQ 33 (98)
T ss_dssp EEEEETTTTEEEEEEEETTSCHHHHHHHT
T ss_pred EEEEeCCCCCcEEEEeCCCCCHHHHHHHc
Confidence 444445553 5679999999999998764
No 67
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=57.31 E-value=13 Score=26.07 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=21.2
Q ss_pred EEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 4 LRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 4 irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
|.+..++..-.+|+|.+|.||-||+.++
T Consensus 7 v~~~~~~~~~~~~~~~~g~tlL~a~~~~ 34 (98)
T 1jq4_A 7 ITAVTEDGESLRFECRSDEDVITAALRQ 34 (98)
T ss_dssp EEEEETTTEEEEEEEESCCTHHHHHHHH
T ss_pred EEEEecCCCcEEEEeCCCChHHHHHHHc
Confidence 4444445556789999999999998765
No 68
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=56.91 E-value=3.5 Score=30.53 Aligned_cols=33 Identities=30% Similarity=0.566 Sum_probs=24.9
Q ss_pred ccCCcccccccc-ccccccccCceeccccccccc
Q psy7966 93 IAFCDACHKLLF-SGHLCRTCGFKFHRACNLAVP 125 (194)
Q Consensus 93 ptfCd~C~klL~-QG~kCk~Cg~~~HkrC~~~Vp 125 (194)
--+|+.|..+-- -=|.|+.|+..||..|..+.-
T Consensus 15 D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~g 48 (89)
T 1wil_A 15 DEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMG 48 (89)
T ss_dssp SCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHT
T ss_pred CcccCccccccccceeccccccccccHhhccccc
Confidence 356999975433 337999999999999986643
No 69
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=56.30 E-value=2.3 Score=32.19 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=0.0
Q ss_pred EEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 4 LRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 4 irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
|.+.-|++++.+|++.+|.||.+|+..+
T Consensus 8 Vtf~~~~G~~~~v~~~~G~tLl~aa~~~ 35 (123)
T 3n9z_C 8 VHFINRDGETLTTKGKVGDSLLDVVVEN 35 (123)
T ss_dssp ----------------------------
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHc
Confidence 3444589988999999999999988764
No 70
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=55.94 E-value=9.7 Score=27.50 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=21.4
Q ss_pred eEEEEcCCC---CeeeEEeecCCcHHHHHHHH
Q psy7966 3 LLRAQLPNQ---QRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 3 ~irv~LPn~---QrT~V~v~~G~tl~~aL~Ka 31 (194)
.|.+..+|. .-.+|++.+|.||-||+..+
T Consensus 3 ~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~ 34 (111)
T 1i7h_A 3 KIVILPHQDLCPDGAVLEANSGETILDAALRN 34 (111)
T ss_dssp EEEECCBTTTBTTCEEEECCTTCBHHHHHHHT
T ss_pred EEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHc
Confidence 355555553 45689999999999998764
No 71
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=55.65 E-value=22 Score=27.50 Aligned_cols=38 Identities=8% Similarity=0.153 Sum_probs=35.7
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCC
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE 40 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~ 40 (194)
.|+|-|||.+.=+|.|-..+++-++..-.+++=||...
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 58999999999999999999999999999999999754
No 72
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=55.61 E-value=36 Score=25.44 Aligned_cols=64 Identities=25% Similarity=0.301 Sum_probs=40.3
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCCC--c-ccCCCCCCCCC-Ccceeeeeeh
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGV--S-LQWDTDSDHLP-TTEIRVEVQE 73 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~~--~-i~w~tD~~~L~-~eel~V~~~~ 73 (194)
.||+|+-.+.+. .|..|+++|...++..|+.- ..|++...|. + .-+..++..|. .-++.|++.+
T Consensus 15 ~Lriy~~E~~~~-----~g~pL~~~Iv~~~~~~GiaG--aTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd 82 (114)
T 1o51_A 15 LLKIYLGEKDKH-----SGKPLFEYLVKRAYELGMKG--VTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVD 82 (114)
T ss_dssp EEEEEEETTCEE-----TTEEHHHHHHHHHHHTTCSC--CEEEECSCCCCC-------------CCCEEEEEEEE
T ss_pred EEEEEECCcccc-----CCeEHHHHHHHHHHHCCCCe--EEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEc
Confidence 588888877664 69999999999999999886 7888875433 2 23455555554 4567777653
No 73
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=55.52 E-value=10 Score=27.17 Aligned_cols=23 Identities=39% Similarity=0.837 Sum_probs=18.4
Q ss_pred ccCCccccccc-cccccccccCcee
Q psy7966 93 IAFCDACHKLL-FSGHLCRTCGFKF 116 (194)
Q Consensus 93 ptfCd~C~klL-~QG~kCk~Cg~~~ 116 (194)
..-|..|++-+ +.||+|+ ||..|
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~F 48 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLF 48 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEE
T ss_pred CCcChhhCCcccccCeecC-CCCEe
Confidence 45699999964 4799999 99766
No 74
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=55.02 E-value=15 Score=34.98 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=35.4
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCC
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP 39 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~ 39 (194)
+.++|+|||++.-+|+|.+-.|..|.+....++-||.-
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e 301 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD 301 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc
Confidence 56899999999999999999999999999999999854
No 75
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=53.76 E-value=27 Score=25.16 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=34.2
Q ss_pred ceEEEEcCCCCeeeEEee-cCCcHHHHHHHHHHhcCCCCCc
Q psy7966 2 ILLRAQLPNQQRTSVHIR-KGQTLLEALSKAMKLRNLKPEM 41 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~-~G~tl~~aL~Kalk~R~L~~~~ 41 (194)
|.|||-=++++. .|+|. |..|+.+-..|...+-++.++.
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~ 47 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHN 47 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCccc
Confidence 679999999976 79999 9999999999988888987765
No 76
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=53.35 E-value=29 Score=22.19 Aligned_cols=43 Identities=7% Similarity=0.175 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTA 44 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~V 44 (194)
|.|.|-.++++.-.++|.+..|+.+--.+.-+.-++.++.-..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L 43 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRL 43 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEE
Confidence 4678888999888999999999998888888888888775433
No 77
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=52.90 E-value=25 Score=30.28 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=33.8
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCC-CCccEEEe
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLK-PEMCTAYD 46 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~-~~~C~Vy~ 46 (194)
+|+||+.++=-.+|.|-|+||.+|++.....+-++. ++.-+++-
T Consensus 33 ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E 77 (281)
T 4gmv_A 33 VIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVE 77 (281)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEE
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEE
Confidence 689999999888999999999999998765555554 33344443
No 78
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=52.56 E-value=6.8 Score=27.29 Aligned_cols=23 Identities=39% Similarity=1.048 Sum_probs=18.3
Q ss_pred ccCCccccccc-cccccccccCcee
Q psy7966 93 IAFCDACHKLL-FSGHLCRTCGFKF 116 (194)
Q Consensus 93 ptfCd~C~klL-~QG~kCk~Cg~~~ 116 (194)
+.-|+.|++-+ +-||+|+ ||..|
T Consensus 15 ~~rC~~C~kkvgl~~f~Cr-Cg~~F 38 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCR-CGTTF 38 (64)
T ss_dssp CCCCTTTCCCCCTTCEECS-SSCEE
T ss_pred CCcChhhCCccCccCEEee-cCCEe
Confidence 46799999854 4699995 99887
No 79
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=51.72 E-value=26 Score=28.38 Aligned_cols=39 Identities=8% Similarity=0.208 Sum_probs=33.8
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCC
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE 40 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~ 40 (194)
..|+||.++++.-+|.|-+.+|..|.+...+++.++..+
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~ 73 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCN 73 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCC
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCC
Confidence 468999999999999999999999999888888776443
No 80
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=51.64 E-value=22 Score=27.27 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=40.6
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCC--Cc-ccCCCCCCCCC-Ccceeeeeeh
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG--VS-LQWDTDSDHLP-TTEIRVEVQE 73 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~--~~-i~w~tD~~~L~-~eel~V~~~~ 73 (194)
..||+|+-.+.|- .|..|+++|...++..|+.- ..|++...| .+ .-+..++..|. .-++.|++.+
T Consensus 10 ~~LrIy~~E~d~~-----~g~pL~~~Iv~~a~~~GiaG--aTV~rgi~GfG~~g~ih~~~~l~ls~dlPVvIe~Vd 78 (127)
T 2dcl_A 10 LRLRIYIGENDKW-----EGRPLYKVIVEKLREMGIAG--ATVYRGIYGFGKKSRVHSSDVIRLSTDLPIIVEVVD 78 (127)
T ss_dssp EEEEEEEETTCEE-----TTEEHHHHHHHHHHHTTCSC--EEEEECSEEEC--------------CCCEEEEEEEE
T ss_pred EEEEEEEcccccc-----CCcCHHHHHHHHHHHCCCCe--EEEEcCcEEECCCCCEecceeeecCCCCCEEEEEEc
Confidence 3689999888765 79999999999999999954 889997532 22 23455555554 4566666553
No 81
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=48.54 E-value=18 Score=33.95 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=32.7
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCC
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP 39 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~ 39 (194)
+.++|||||+..+ |.|.+..|.+|.+.+.+++=||.-
T Consensus 5 i~v~V~llDgt~e-~~vd~~tt~~ell~~V~~~LgL~e 41 (575)
T 2i1j_A 5 MNVRVTTMDAELE-FAIQQTTTGKQLFDQVVKTIGLRE 41 (575)
T ss_dssp EEEEEECSSCEEE-EEEETTCBHHHHHHHHHHHHTCCC
T ss_pred EEEEEEeCCCeEE-EEECCCCCHHHHHHHHHHHcCCCC
Confidence 5799999999654 999999999999999999999853
No 82
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=48.18 E-value=15 Score=26.44 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=23.1
Q ss_pred CeeeEEeecCCcHHHHHHHHHHh-----cC-CCCCccEEEecC
Q psy7966 12 QRTSVHIRKGQTLLEALSKAMKL-----RN-LKPEMCTAYDSN 48 (194)
Q Consensus 12 QrT~V~v~~G~tl~~aL~Kalk~-----R~-L~~~~C~Vy~~~ 48 (194)
...+|+|.+|.||-||+..+=-. +| =..-.|.|....
T Consensus 15 ~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~ 57 (113)
T 3ah7_A 15 EGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRK 57 (113)
T ss_dssp TCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEE
T ss_pred CCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcC
Confidence 34689999999999987653110 11 233457777653
No 83
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=47.01 E-value=8.5 Score=32.23 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
++|.|++|+++.+ +.+..|.+|.|.|..|
T Consensus 4 ~~v~v~~~g~~~~-~~i~~~eRLsdll~ra 32 (236)
T 3p42_A 4 GMVTIYLPGEQQT-LSVGPVENVAQLVTQP 32 (236)
T ss_dssp EEEEEECTTSSCE-EEEEEESBHHHHHTCT
T ss_pred eeEEEEECCCcee-EeeCCCCcHHHHHhhc
Confidence 6899999999866 8999999999998765
No 84
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=45.96 E-value=44 Score=21.91 Aligned_cols=44 Identities=7% Similarity=0.129 Sum_probs=36.1
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY 45 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy 45 (194)
+.|.|-.++++...|+|.+..|+.+--.+.-++-++.++.=..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~ 47 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 47 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE
Confidence 56778888988889999999999998888888888887754433
No 85
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.85 E-value=8.8 Score=26.41 Aligned_cols=23 Identities=22% Similarity=0.619 Sum_probs=19.2
Q ss_pred cCCcc--ccccccccccccccCcee
Q psy7966 94 AFCDA--CHKLLFSGHLCRTCGFKF 116 (194)
Q Consensus 94 tfCd~--C~klL~QG~kCk~Cg~~~ 116 (194)
.-|.+ |++..+-+|+|+.|+..|
T Consensus 13 ~~Cs~~~Ck~~~ll~f~C~~C~~~F 37 (63)
T 1x4v_A 13 NKCERAGCRQREMMKLTCERCSRNF 37 (63)
T ss_dssp CCCCSTTCCCCCSSCCBCSSSCCBC
T ss_pred CCCCccCCCCCCccceECCCCCccc
Confidence 45877 998777899999999877
No 86
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=44.78 E-value=33 Score=27.70 Aligned_cols=63 Identities=14% Similarity=0.054 Sum_probs=39.5
Q ss_pred CeeeEEeecCCcHHHHHHHHHHh--------cCC---CCCccEEEecCCCCc-ccCCCCCCCCCCcceeeeeehhcC
Q psy7966 12 QRTSVHIRKGQTLLEALSKAMKL--------RNL---KPEMCTAYDSNTGVS-LQWDTDSDHLPTTEIRVEVQERFP 76 (194)
Q Consensus 12 QrT~V~v~~G~tl~~aL~Kalk~--------R~L---~~~~C~Vy~~~~~~~-i~w~tD~~~L~~eel~V~~~~~~p 76 (194)
|.-.|++.+|+||-|||.++=.. .+. ..-.|+|... |.. ....+.+..+.|+.+.++-+..+|
T Consensus 24 ~~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i~--G~~~~aC~~~~~~~~g~~~~ie~l~~~p 98 (241)
T 2bs2_B 24 QEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMIN--GRPSLACRTLTKDFEDGVITLLPLPAFK 98 (241)
T ss_dssp EEEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEET--TEEEEGGGCBGGGCTTSEEEEECCTTSE
T ss_pred EEEEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEEC--CCeecchhCcHhHcCCCeEEEecCCCCC
Confidence 56778999999999999875211 121 1235888773 333 455555555555667777655555
No 87
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=44.33 E-value=73 Score=21.74 Aligned_cols=57 Identities=12% Similarity=0.250 Sum_probs=37.9
Q ss_pred EEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCCCcccCCCCCCCCCCcceee
Q psy7966 4 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRV 69 (194)
Q Consensus 4 irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~~~i~w~tD~~~L~~eel~V 69 (194)
|.|.|=....-.+++.+|.|+.|-| +.-+|.++..+|-+.+ ..++.|+- +.|+.+.+
T Consensus 3 v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG--~~v~~d~~---l~GD~VeI 59 (74)
T 2l32_A 3 VTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDG--RPVPEDQS---VEVDRVKV 59 (74)
T ss_dssp EEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCC--CCCCTTSS---SCCCCEEE
T ss_pred EEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECC--EECCHHHC---CCCCEEEE
Confidence 3444433334458999999998865 5779999998777644 45566662 35666654
No 88
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=44.14 E-value=45 Score=21.21 Aligned_cols=43 Identities=7% Similarity=0.137 Sum_probs=34.7
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTA 44 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~V 44 (194)
|.|.|-.++++.-.++|.+-.|+.+--.+.-+.-++.++.-..
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L 43 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 43 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEE
Confidence 4678888898888899999999988888877888887765433
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.82 E-value=8.8 Score=24.21 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=21.6
Q ss_pred cCCcccccccc--ccccccccCceecccccc
Q psy7966 94 AFCDACHKLLF--SGHLCRTCGFKFHRACNL 122 (194)
Q Consensus 94 tfCd~C~klL~--QG~kCk~Cg~~~HkrC~~ 122 (194)
++|..|++.=- .=+.|+.|...||..|..
T Consensus 1 a~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~ 31 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLILCDECNKAFHLFCLR 31 (51)
T ss_dssp CCCTTTCCSSCCSCCEECTTTCCEECHHHHC
T ss_pred CCCCCCCCCCCCCCEEECCCCChhhCcccCC
Confidence 46888875421 236899999999999974
No 90
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=43.81 E-value=17 Score=26.72 Aligned_cols=29 Identities=17% Similarity=0.590 Sum_probs=20.4
Q ss_pred cCCcccccc-cc-cccccccc-Cceecccccc
Q psy7966 94 AFCDACHKL-LF-SGHLCRTC-GFKFHRACNL 122 (194)
Q Consensus 94 tfCd~C~kl-L~-QG~kCk~C-g~~~HkrC~~ 122 (194)
..||.|+.. |. .-|+|..| +|..=..|..
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~ 63 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFD 63 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHH
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHc
Confidence 789999974 43 44899999 5555555643
No 91
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.32 E-value=11 Score=26.87 Aligned_cols=30 Identities=20% Similarity=0.530 Sum_probs=23.5
Q ss_pred ccCCcccccccc----ccccccccCceecccccc
Q psy7966 93 IAFCDACHKLLF----SGHLCRTCGFKFHRACNL 122 (194)
Q Consensus 93 ptfCd~C~klL~----QG~kCk~Cg~~~HkrC~~ 122 (194)
-.+|..|++.-. +=+.|+.|...||..|..
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~ 49 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHK 49 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCC
Confidence 367999987532 336899999999999964
No 92
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.18 E-value=66 Score=20.85 Aligned_cols=44 Identities=7% Similarity=0.016 Sum_probs=34.4
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY 45 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy 45 (194)
+.|+|-.++++.-.|+|.+..|+.+--.+.-+.-|+.++.-..+
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~ 51 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL 51 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE
Confidence 45677778888788999999999888877777888877654443
No 93
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=43.01 E-value=9 Score=27.77 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=25.5
Q ss_pred cCCcc--ccccccccccccccCceecccccccccccccc
Q psy7966 94 AFCDA--CHKLLFSGHLCRTCGFKFHRACNLAVPYLCQV 130 (194)
Q Consensus 94 tfCd~--C~klL~QG~kCk~Cg~~~HkrC~~~Vp~~C~~ 130 (194)
.-|.+ |++..+-+|.|+.|+..|=-+=...-.-.|..
T Consensus 26 ~~C~~~~Ck~~~~l~f~C~~C~~~FC~~HR~~e~H~C~~ 64 (86)
T 1wfe_A 26 YSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEK 64 (86)
T ss_dssp EECCSTTCCCEESSCEECTTTCCEECGGGCSTGGGTCSS
T ss_pred CCCCCcCCCCCCccceECCCCCcccccccCCccCCCCCC
Confidence 34888 99988889999999988733333333345654
No 94
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=42.88 E-value=31 Score=27.73 Aligned_cols=65 Identities=17% Similarity=0.117 Sum_probs=40.3
Q ss_pred CeeeEEeec--CCcHHHHHHHHHHhcC-C----CCC-----ccEEEecCCCCcccCCCCCCC--CCCcceeeeeehhcCC
Q psy7966 12 QRTSVHIRK--GQTLLEALSKAMKLRN-L----KPE-----MCTAYDSNTGVSLQWDTDSDH--LPTTEIRVEVQERFPA 77 (194)
Q Consensus 12 QrT~V~v~~--G~tl~~aL~Kalk~R~-L----~~~-----~C~Vy~~~~~~~i~w~tD~~~--L~~eel~V~~~~~~p~ 77 (194)
|.-.|++.+ |+||-|||.++...-. | ... .|+|-..+.. .++..+.+.. ..+.++.++-+..+|+
T Consensus 21 ~~~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~-~laC~~~~~~~g~~~~~~~ie~l~~~pv 99 (238)
T 2wdq_B 21 QDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKN-GLACITPISALNQPGKKIVIRPLPGLPV 99 (238)
T ss_dssp EEEEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEETTEE-EEGGGCBGGGTCCTTSCEEEECCTTSBE
T ss_pred EEEEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEECCEE-EcccccchhhhccCCCCEEEeeCCCCcc
Confidence 556788999 9999999999874411 1 112 6888874422 1455665555 4344577775544444
No 95
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=42.79 E-value=26 Score=29.70 Aligned_cols=36 Identities=8% Similarity=-0.086 Sum_probs=30.0
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCC
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLK 38 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~ 38 (194)
+|+||+.++=-.+|.|-++||++|.+...+.+++..
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~ 45 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSV 45 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC---
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCC
Confidence 689999999888999999999999998877776654
No 96
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=42.75 E-value=45 Score=22.69 Aligned_cols=43 Identities=9% Similarity=0.197 Sum_probs=35.8
Q ss_pred CceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccE
Q psy7966 1 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCT 43 (194)
Q Consensus 1 ~~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~ 43 (194)
||.|.|-..+++...|+|.+-.|+.+--.+.-+.-++.++.--
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qr 43 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 43 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEE
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEE
Confidence 6788999899988899999999999888888788888877643
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=42.17 E-value=12 Score=24.66 Aligned_cols=29 Identities=24% Similarity=0.754 Sum_probs=22.5
Q ss_pred cCCcccccccc----ccccccccCceecccccc
Q psy7966 94 AFCDACHKLLF----SGHLCRTCGFKFHRACNL 122 (194)
Q Consensus 94 tfCd~C~klL~----QG~kCk~Cg~~~HkrC~~ 122 (194)
.+|..|++.-. +=+.|+.|...||..|..
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~ 39 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQLCHT 39 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCCEEETTTSS
T ss_pred CCCCCCCCCCCCCCCCEEECCCCChHHHhhhCC
Confidence 57888976421 336899999999999965
No 98
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=41.43 E-value=37 Score=22.36 Aligned_cols=44 Identities=7% Similarity=0.088 Sum_probs=36.3
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY 45 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy 45 (194)
+.|.|-.++++...|+|.+-.|+.+--.+..++-++.++.-..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~ 47 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLI 47 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE
Confidence 56777778888889999999999998888888889988764433
No 99
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=41.26 E-value=8.8 Score=19.05 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=8.8
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 678888877654
No 100
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=40.98 E-value=8.9 Score=19.27 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=8.8
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..||..|-.
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 678888877754
No 101
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=40.79 E-value=10 Score=27.37 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=18.3
Q ss_pred CCccccccc-c----ccccccccCceecc
Q psy7966 95 FCDACHKLL-F----SGHLCRTCGFKFHR 118 (194)
Q Consensus 95 fCd~C~klL-~----QG~kCk~Cg~~~Hk 118 (194)
.|..|++.+ + +-++|+.|+..|-.
T Consensus 29 ~Cp~CG~~~v~r~atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 29 ACPNCGEDRVDRQGTGIWQCSYCDYKFTG 57 (83)
T ss_dssp ECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred cCCCCCCcceeccCCCeEECCCCCCEecC
Confidence 699999844 4 44799999987653
No 102
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.10 E-value=11 Score=24.21 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=18.7
Q ss_pred CCccCCcccccccc------------cc------ccccccCceeccc
Q psy7966 91 FAIAFCDACHKLLF------------SG------HLCRTCGFKFHRA 119 (194)
Q Consensus 91 ~~ptfCd~C~klL~------------QG------~kCk~Cg~~~Hkr 119 (194)
.+|--|+.|++... .| |+|..|+..|-.+
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~ 51 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKP 51 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSH
T ss_pred CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCH
Confidence 34556888877431 32 7888888877543
No 103
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=40.06 E-value=57 Score=26.70 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=43.5
Q ss_pred CeeeEEeec-CCcHHHHHHHHHHhcC--C---------CCCccEEEecCCCCcccCCCCCCCCCCcceeeeeehhcCC
Q psy7966 12 QRTSVHIRK-GQTLLEALSKAMKLRN--L---------KPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVQERFPA 77 (194)
Q Consensus 12 QrT~V~v~~-G~tl~~aL~Kalk~R~--L---------~~~~C~Vy~~~~~~~i~w~tD~~~L~~eel~V~~~~~~p~ 77 (194)
|.-.|++.+ |+||-|||.++..... | ..-.|+|-..+. ......+.+..+.|+.+.++-+..||+
T Consensus 31 ~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i~G~-~~~aC~~~~~~~~g~~~~iepl~~~pv 107 (252)
T 2h88_B 31 QTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGG-NTLACTKKIDPDLSKTTKIYPLPHMYV 107 (252)
T ss_dssp EEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETTE-EEEGGGSBCCCCTTSCEEEECSTTCBE
T ss_pred EEEEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEECCc-EEccccCCHhHcCCCceEEecccCCCc
Confidence 456788888 9999999999764211 1 123478876442 125777777777777788886655664
No 104
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=38.99 E-value=60 Score=21.10 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=35.1
Q ss_pred CceEEEEcCCCCee-eEE-eecCCcHHHHHHHHHHhcCCCCCccEEE
Q psy7966 1 GILLRAQLPNQQRT-SVH-IRKGQTLLEALSKAMKLRNLKPEMCTAY 45 (194)
Q Consensus 1 ~~~irv~LPn~QrT-~V~-v~~G~tl~~aL~Kalk~R~L~~~~C~Vy 45 (194)
++.|.|-.++++.+ +++ |.+-.|+.+--.+.-+.-|+.++.=...
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~ 48 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLF 48 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEE
Confidence 36678888888775 899 9999999888887778888887764433
No 105
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.88 E-value=12 Score=26.28 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=18.3
Q ss_pred ccCCcccccccc-c---cccccccCcee
Q psy7966 93 IAFCDACHKLLF-S---GHLCRTCGFKF 116 (194)
Q Consensus 93 ptfCd~C~klL~-Q---G~kCk~Cg~~~ 116 (194)
+.-|..|++.+. . ||+| -||..|
T Consensus 15 ~~rC~~C~kk~gL~~~egf~C-rCg~~F 41 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSC-RCGYVF 41 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCC-SSSCCC
T ss_pred CCcchhhCCeecccccCceEe-cCCCEe
Confidence 467999999765 3 7999 799877
No 106
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=38.50 E-value=67 Score=20.96 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=35.2
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCT 43 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~ 43 (194)
+.|.|-.++++...|+|.+..|+.+-=.+.-++-|+.++.=.
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qr 46 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFW 46 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEE
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEE
Confidence 567888899988889999999999888888888898877643
No 107
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=38.48 E-value=9.8 Score=19.07 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=8.7
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 678888877654
No 108
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=38.42 E-value=23 Score=28.20 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=41.4
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCC-------CCCccEEEecCCCCc-ccCCCCCCCCCCccee
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL-------KPEMCTAYDSNTGVS-LQWDTDSDHLPTTEIR 68 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L-------~~~~C~Vy~~~~~~~-i~w~tD~~~L~~eel~ 68 (194)
.|++.+ |++.-.|+|.||+||-|+|...+..-+. ..-.|.|...+ .. .+.-+.+..+.|.++.
T Consensus 5 ~i~~~v-NG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~vdG--~~v~SC~~~~~~~~G~~V~ 75 (166)
T 1n62_A 5 HIELTI-NGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDG--MSVKSCTMFAVQANGASIT 75 (166)
T ss_dssp EEEEEE-TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETT--EEEEGGGSBGGGGTTCEEE
T ss_pred eEEEEE-CCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEECC--cEEechhhhHHHhCCceEE
Confidence 344444 7878889999999999999876533221 23347888744 44 3566666666666554
No 109
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=38.13 E-value=16 Score=22.02 Aligned_cols=12 Identities=25% Similarity=0.503 Sum_probs=8.5
Q ss_pred cccccccCceec
Q psy7966 106 GHLCRTCGFKFH 117 (194)
Q Consensus 106 G~kCk~Cg~~~H 117 (194)
-|+|..|+..|-
T Consensus 30 ~~~C~~C~~~f~ 41 (60)
T 2adr_A 30 PYPCGLCNRAFT 41 (60)
T ss_dssp SEECTTTCCEES
T ss_pred CccCCCCCCccC
Confidence 377888887664
No 110
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=37.65 E-value=11 Score=18.97 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=8.9
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 678888877754
No 111
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=37.63 E-value=13 Score=24.67 Aligned_cols=24 Identities=29% Similarity=0.739 Sum_probs=19.1
Q ss_pred ccCCcccccccc-----ccccccccCcee
Q psy7966 93 IAFCDACHKLLF-----SGHLCRTCGFKF 116 (194)
Q Consensus 93 ptfCd~C~klL~-----QG~kCk~Cg~~~ 116 (194)
-.||.-|+..++ -.+.|..|++..
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 478999998665 457999999875
No 112
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=37.46 E-value=18 Score=23.61 Aligned_cols=28 Identities=32% Similarity=0.692 Sum_probs=21.9
Q ss_pred cCCccccccccccccccccCceecccccc
Q psy7966 94 AFCDACHKLLFSGHLCRTCGFKFHRACNL 122 (194)
Q Consensus 94 tfCd~C~klL~QG~kCk~Cg~~~HkrC~~ 122 (194)
.+|..|++.= .=+.|+.|...||..|..
T Consensus 6 ~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ 33 (60)
T 2puy_A 6 DFCSVCRKSG-QLLMCDTCSRVYHLDCLD 33 (60)
T ss_dssp SSCTTTCCCS-SCEECSSSSCEECGGGSS
T ss_pred CCCcCCCCCC-cEEEcCCCCcCEECCcCC
Confidence 5788887631 225899999999999976
No 113
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=36.99 E-value=17 Score=21.55 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=8.4
Q ss_pred ccccccCceec
Q psy7966 107 HLCRTCGFKFH 117 (194)
Q Consensus 107 ~kCk~Cg~~~H 117 (194)
|+|..|+..|-
T Consensus 30 ~~C~~C~~~f~ 40 (57)
T 1bbo_A 30 YHCTYCNFSFK 40 (57)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhc
Confidence 78888887764
No 114
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=36.86 E-value=71 Score=21.98 Aligned_cols=44 Identities=7% Similarity=0.129 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY 45 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy 45 (194)
|.|.|-.++++.-.|+|.+-.|+.+--.+.-+.-|+.++.-..+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~ 44 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE
Confidence 56788889998888999999999988888778888877654433
No 115
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=36.67 E-value=15 Score=23.07 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=20.3
Q ss_pred ccCCccCCcccccccc------------ccccccccCceeccc
Q psy7966 89 TFFAIAFCDACHKLLF------------SGHLCRTCGFKFHRA 119 (194)
Q Consensus 89 Tf~~ptfCd~C~klL~------------QG~kCk~Cg~~~Hkr 119 (194)
+-..|--|+.|++... .-|+|..||..|-..
T Consensus 10 ~~~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 10 TNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp CSSSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEEC
T ss_pred CCCCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccC
Confidence 3345566899987321 348899998877644
No 116
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=36.54 E-value=78 Score=20.87 Aligned_cols=40 Identities=8% Similarity=0.219 Sum_probs=33.9
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCc
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM 41 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~ 41 (194)
+.|.|-.++++...|+|.+-.|+.+--.+.-++-++.++.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~ 52 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ 52 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHH
Confidence 5677777888888999999999999888888888887765
No 117
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.30 E-value=23 Score=24.03 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=27.3
Q ss_pred cCCccCCccccccccccccccccCceeccccccccccccccc
Q psy7966 90 FFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLCQVE 131 (194)
Q Consensus 90 f~~ptfCd~C~klL~QG~kCk~Cg~~~HkrC~~~Vp~~C~~~ 131 (194)
+-....|..|++.|+.+..-..-+..+|..|-. -..|...
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~--C~~C~~~ 51 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFR--CHTCEAT 51 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCB--CSSSCCB
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCE--EcCCCCC
Confidence 445677999999997665555667788887742 2346544
No 118
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=35.98 E-value=13 Score=24.17 Aligned_cols=27 Identities=30% Similarity=0.584 Sum_probs=18.9
Q ss_pred ccCCccccccc-c--------------ccccccccCceeccc
Q psy7966 93 IAFCDACHKLL-F--------------SGHLCRTCGFKFHRA 119 (194)
Q Consensus 93 ptfCd~C~klL-~--------------QG~kCk~Cg~~~Hkr 119 (194)
|=-|+.|++.. . .-|+|..||..|-.+
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSH
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCH
Confidence 44588898743 1 238999999888654
No 119
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.90 E-value=16 Score=23.06 Aligned_cols=28 Identities=25% Similarity=0.378 Sum_probs=18.8
Q ss_pred CCccCCcccccccc---------------ccccccccCceecc
Q psy7966 91 FAIAFCDACHKLLF---------------SGHLCRTCGFKFHR 118 (194)
Q Consensus 91 ~~ptfCd~C~klL~---------------QG~kCk~Cg~~~Hk 118 (194)
..|-.|+.|++..- .-|+|..|+..|-.
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 44566888877421 33889999887754
No 120
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.87 E-value=11 Score=18.78 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.4
Q ss_pred ccccccCceeccc
Q psy7966 107 HLCRTCGFKFHRA 119 (194)
Q Consensus 107 ~kCk~Cg~~~Hkr 119 (194)
|+|..|+..|...
T Consensus 4 ~~C~~C~~~f~~~ 16 (30)
T 2m0d_A 4 YQCDYCGRSFSDP 16 (30)
T ss_dssp EECTTTCCEESCH
T ss_pred ccCCCCCcccCCH
Confidence 6788888777543
No 121
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=35.49 E-value=12 Score=18.63 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=8.4
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 578888776654
No 122
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=35.42 E-value=19 Score=24.84 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=25.8
Q ss_pred ccCCccCCccccccc-c---ccccccccCceecccccc
Q psy7966 89 TFFAIAFCDACHKLL-F---SGHLCRTCGFKFHRACNL 122 (194)
Q Consensus 89 Tf~~ptfCd~C~klL-~---QG~kCk~Cg~~~HkrC~~ 122 (194)
....-.+|..|++.= . +=+.|+.|...||..|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~ 49 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 49 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCC
Confidence 344568899998653 1 336899999999999964
No 123
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=35.24 E-value=14 Score=18.51 Aligned_cols=12 Identities=33% Similarity=0.802 Sum_probs=8.6
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 578888877654
No 124
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=35.23 E-value=13 Score=30.75 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=17.1
Q ss_pred EeecCCcHHHHHHHHHHhcCCC
Q psy7966 17 HIRKGQTLLEALSKAMKLRNLK 38 (194)
Q Consensus 17 ~v~~G~tl~~aL~Kalk~R~L~ 38 (194)
+|-.-..+.++|+|+||+||..
T Consensus 134 ~vp~~t~~S~~lsKdLKkrGFk 155 (186)
T 2jg6_A 134 DRITVDDTATQLSKDLKQYGFK 155 (186)
T ss_dssp GCCSCCHHHHHHHHHHHTTTCC
T ss_pred hcCCCCHHHHHHHHHHHHCCCe
Confidence 3334456899999999999975
No 125
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.20 E-value=12 Score=18.55 Aligned_cols=12 Identities=42% Similarity=0.969 Sum_probs=9.0
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 678888877754
No 126
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=35.16 E-value=19 Score=24.93 Aligned_cols=34 Identities=38% Similarity=0.766 Sum_probs=29.8
Q ss_pred ccCCcccccccc---ccccccccCceecccccccccc
Q psy7966 93 IAFCDACHKLLF---SGHLCRTCGFKFHRACNLAVPY 126 (194)
Q Consensus 93 ptfCd~C~klL~---QG~kCk~Cg~~~HkrC~~~Vp~ 126 (194)
...|..|.+.=| -|-.|..|...|=.||-.+|+.
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~l 45 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSL 45 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEES
T ss_pred cchhhhhccceeccCCCccccccCCeeecccCCEeee
Confidence 467999998877 8899999999999999988874
No 127
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.97 E-value=20 Score=23.10 Aligned_cols=29 Identities=31% Similarity=0.637 Sum_probs=22.5
Q ss_pred ccCCccccccccccccccccCceecccccc
Q psy7966 93 IAFCDACHKLLFSGHLCRTCGFKFHRACNL 122 (194)
Q Consensus 93 ptfCd~C~klL~QG~kCk~Cg~~~HkrC~~ 122 (194)
-.+|..|++.- .=+.|+.|...||..|..
T Consensus 9 ~~~C~vC~~~g-~ll~Cd~C~~~~H~~Cl~ 37 (56)
T 2yql_A 9 EDFCSVCRKSG-QLLMCDTCSRVYHLDCLD 37 (56)
T ss_dssp CCSCSSSCCSS-CCEECSSSSCEECSSSSS
T ss_pred CCCCccCCCCC-eEEEcCCCCcceECccCC
Confidence 46788887641 235899999999999976
No 128
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=40.98 E-value=8.2 Score=19.22 Aligned_cols=13 Identities=31% Similarity=0.932 Sum_probs=8.7
Q ss_pred ccccccCceeccc
Q psy7966 107 HLCRTCGFKFHRA 119 (194)
Q Consensus 107 ~kCk~Cg~~~Hkr 119 (194)
|+|..||..|-.+
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5777887766543
No 129
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=34.67 E-value=13 Score=18.73 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=8.3
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 678888776643
No 130
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=34.64 E-value=11 Score=19.11 Aligned_cols=12 Identities=17% Similarity=0.276 Sum_probs=8.6
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..||..|-.
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 678888877654
No 131
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=34.56 E-value=26 Score=23.18 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=24.8
Q ss_pred ccCCccCCccccc--ccc----ccccccccCceeccccccc
Q psy7966 89 TFFAIAFCDACHK--LLF----SGHLCRTCGFKFHRACNLA 123 (194)
Q Consensus 89 Tf~~ptfCd~C~k--lL~----QG~kCk~Cg~~~HkrC~~~ 123 (194)
.|.....|-.|++ +++ .-+.|..||+..-.+=.+.
T Consensus 7 ~ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~ 47 (58)
T 1dl6_A 7 DALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDV 47 (58)
T ss_dssp CCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCC
T ss_pred hccccccCcCCCCCceeEeCCCCeEEeCCCCCEEecccccc
Confidence 4556667999976 555 3479999999887654443
No 132
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.36 E-value=13 Score=18.37 Aligned_cols=12 Identities=42% Similarity=0.982 Sum_probs=8.2
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 567778776653
No 133
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.21 E-value=13 Score=20.52 Aligned_cols=12 Identities=17% Similarity=0.534 Sum_probs=8.8
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elm_A 10 YYCSQCHYSSIT 21 (37)
T ss_dssp EECSSSSCEEEC
T ss_pred eECCCCCcccCC
Confidence 678888877754
No 134
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=33.98 E-value=20 Score=29.36 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=16.6
Q ss_pred eecCCcHHHHHHHHHHhcCCC
Q psy7966 18 IRKGQTLLEALSKAMKLRNLK 38 (194)
Q Consensus 18 v~~G~tl~~aL~Kalk~R~L~ 38 (194)
|-.-..+.++|+|+||+||..
T Consensus 135 vp~~t~~S~~lsk~LKkrGfk 155 (183)
T 2ofk_A 135 IPTSTPASDALAKALKKRGFK 155 (183)
T ss_dssp SCSCCHHHHHHHHHHHHTTCC
T ss_pred ccCCCHHHHHHHHHHHhCCCe
Confidence 333456889999999999975
No 135
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=33.98 E-value=15 Score=27.82 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=15.0
Q ss_pred CcHHHHHHHHHHhcCCCCC
Q psy7966 22 QTLLEALSKAMKLRNLKPE 40 (194)
Q Consensus 22 ~tl~~aL~Kalk~R~L~~~ 40 (194)
-|+|+.|+++|+...|+..
T Consensus 10 ~T~Re~Ii~lL~~~plta~ 28 (105)
T 2gmg_A 10 ATRREKIIELLLEGDYSPS 28 (105)
T ss_dssp HHHHHHHHHHTTTSCBCTT
T ss_pred ccHHHHHHHHHHcCCCCHH
Confidence 4889999999986666654
No 136
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=33.31 E-value=20 Score=26.39 Aligned_cols=29 Identities=34% Similarity=0.616 Sum_probs=21.7
Q ss_pred CCcccccccc----cc-----ccccccCceeccccccc
Q psy7966 95 FCDACHKLLF----SG-----HLCRTCGFKFHRACNLA 123 (194)
Q Consensus 95 fCd~C~klL~----QG-----~kCk~Cg~~~HkrC~~~ 123 (194)
+|+.|.+--. .| +.|+.|+..+|..|...
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 6888855432 12 78999999999999764
No 137
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.16 E-value=21 Score=24.73 Aligned_cols=23 Identities=35% Similarity=0.790 Sum_probs=18.4
Q ss_pred ccCCccccccc-cccccccccCcee
Q psy7966 93 IAFCDACHKLL-FSGHLCRTCGFKF 116 (194)
Q Consensus 93 ptfCd~C~klL-~QG~kCk~Cg~~~ 116 (194)
+.-|..|++-+ +-||+| -||..|
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~F 38 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGSTF 38 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSCEE
T ss_pred CCcChhhCCcccccCeEe-ecCCEe
Confidence 46799999864 369999 599887
No 138
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=32.73 E-value=38 Score=25.83 Aligned_cols=27 Identities=7% Similarity=0.305 Sum_probs=23.8
Q ss_pred eeEEeecCCcHHHHHHHHHHhcCCCCC
Q psy7966 14 TSVHIRKGQTLLEALSKAMKLRNLKPE 40 (194)
Q Consensus 14 T~V~v~~G~tl~~aL~Kalk~R~L~~~ 40 (194)
-++.+.||..|.++|.+.++.+|+.--
T Consensus 5 ~~lrL~~Gedl~~~i~~~~~~~~i~~a 31 (142)
T 2p6y_A 5 IALRLTRGMDLKQQIVQLVQQHRIHAG 31 (142)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCSSE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCEE
Confidence 367899999999999999999998643
No 139
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=32.70 E-value=1.2e+02 Score=28.71 Aligned_cols=47 Identities=9% Similarity=0.139 Sum_probs=39.1
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCc--cEEEecC
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM--CTAYDSN 48 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~--C~Vy~~~ 48 (194)
..+|||.|++..++|-++...|+++.++-|.++=|+.-+. |+|...+
T Consensus 353 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~ 401 (694)
T 3cf6_E 353 VLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGG 401 (694)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHTCCSCEEEEEECTTS
T ss_pred eeEEEEccCCceeEEEeeccccHHHHHHHHHHHhCCcccceEEEEeecC
Confidence 3689999999999999999999999999999998886554 5544433
No 140
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=32.66 E-value=49 Score=25.31 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=30.9
Q ss_pred EEEE--cCCCCeeeEEeecCCcHHHHHHHHHHhcCCC
Q psy7966 4 LRAQ--LPNQQRTSVHIRKGQTLLEALSKAMKLRNLK 38 (194)
Q Consensus 4 irv~--LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~ 38 (194)
+.|| .|++=+|+|.|-.+-|.+|.|..||.+-|+.
T Consensus 10 v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~ 46 (117)
T 2c5l_C 10 VQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYS 46 (117)
T ss_dssp EEEESCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTS
T ss_pred EEEecCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCc
Confidence 4444 6999999999999999999999999997765
No 141
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.15 E-value=15 Score=19.43 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=9.1
Q ss_pred ccccccCceeccc
Q psy7966 107 HLCRTCGFKFHRA 119 (194)
Q Consensus 107 ~kCk~Cg~~~Hkr 119 (194)
|+|..|+..|-.+
T Consensus 8 ~~C~~C~k~f~~~ 20 (35)
T 2elx_A 8 YVCALCLKKFVSS 20 (35)
T ss_dssp EECSSSCCEESSH
T ss_pred eECCCCcchhCCH
Confidence 6788888776543
No 142
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=31.99 E-value=72 Score=22.59 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=39.3
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCCCcc
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSL 53 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~~~i 53 (194)
+.|+|--.++..-.+.|++..++.....+-.+++|+.++.....- +|..|
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F--dG~~l 57 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF--DGQPI 57 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE--TTEEC
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE--CCEEc
Confidence 568888888888889999999999999999999999887543332 34554
No 143
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=31.98 E-value=83 Score=21.36 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=36.1
Q ss_pred CceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEE
Q psy7966 1 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY 45 (194)
Q Consensus 1 ~~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy 45 (194)
|+.|.|-..+++.-.|+|.+-.|+.+--.+.-+.-++.++.--.+
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 53 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI 53 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEE
Confidence 577888889999999999999999888777777788877654433
No 144
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=31.73 E-value=19 Score=20.55 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=5.4
Q ss_pred ccCCcccccc
Q psy7966 93 IAFCDACHKL 102 (194)
Q Consensus 93 ptfCd~C~kl 102 (194)
|--|+.|++.
T Consensus 10 ~~~C~~C~k~ 19 (45)
T 2epq_A 10 PYSCPVCGLR 19 (45)
T ss_dssp SSEETTTTEE
T ss_pred CCcCCCCCcc
Confidence 4446666553
No 145
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=31.64 E-value=21 Score=27.54 Aligned_cols=34 Identities=18% Similarity=0.543 Sum_probs=28.5
Q ss_pred CccCCccccccc-c---ccccccccCceeccccccccc
Q psy7966 92 AIAFCDACHKLL-F---SGHLCRTCGFKFHRACNLAVP 125 (194)
Q Consensus 92 ~ptfCd~C~klL-~---QG~kCk~Cg~~~HkrC~~~Vp 125 (194)
.-..|..|.+.+ | .|-.|.+|+..+=++|...++
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~ 91 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS 91 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccC
Confidence 457899998865 4 789999999999999988774
No 146
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.40 E-value=24 Score=25.20 Aligned_cols=23 Identities=35% Similarity=0.876 Sum_probs=18.1
Q ss_pred ccCCccccccc-cccccccccCcee
Q psy7966 93 IAFCDACHKLL-FSGHLCRTCGFKF 116 (194)
Q Consensus 93 ptfCd~C~klL-~QG~kCk~Cg~~~ 116 (194)
+.-|..|++-+ +-||+| -||..|
T Consensus 25 ~~RC~~C~kkvgL~~f~C-rCg~~F 48 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKC-RCGSTF 48 (74)
T ss_dssp CCBCSSSCCBCTTTCEEC-TTSCEE
T ss_pred CccchhhcCcccccceEe-ccCCEe
Confidence 46699999765 369999 599887
No 147
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=31.38 E-value=1.2e+02 Score=20.94 Aligned_cols=45 Identities=7% Similarity=-0.026 Sum_probs=36.2
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEe
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 46 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~ 46 (194)
+.|.|-.++++.-+++|.+..|+.+.-.+.-.+.|+.++.-..+.
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 456677778888889999999999988888888999888654443
No 148
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=31.34 E-value=23 Score=20.98 Aligned_cols=12 Identities=17% Similarity=0.534 Sum_probs=9.2
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 33 ~~C~~C~~~f~~ 44 (57)
T 3uk3_C 33 YKCEFCEYAAAQ 44 (57)
T ss_dssp EECSSSSCEESS
T ss_pred cCCCCCcchhCC
Confidence 788888877754
No 149
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=31.09 E-value=55 Score=24.40 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=34.1
Q ss_pred CceEEEEc----CCCCeeeEEeecCCcHHHHHHHHHHhcCCCCC
Q psy7966 1 GILLRAQL----PNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE 40 (194)
Q Consensus 1 ~~~irv~L----Pn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~ 40 (194)
+++|+||= |.--..+|-|-..-|..+.+..||++-||..+
T Consensus 9 ~g~lkIYg~~L~~~~~Yksvlvt~~tta~~vV~eaLekygL~~~ 52 (116)
T 1wxa_A 9 GGTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKE 52 (116)
T ss_dssp CCEEEECCTTTCSSSCCEEEECCSSCCHHHHHHHHHHHHTCSSS
T ss_pred CeEEEEeCCcccCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCC
Confidence 45677773 67778899999999999999999999999764
No 150
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=31.03 E-value=15 Score=19.80 Aligned_cols=12 Identities=33% Similarity=0.802 Sum_probs=7.7
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 12 ~~C~~C~k~f~~ 23 (37)
T 1p7a_A 12 FQCPDCDRSFSR 23 (37)
T ss_dssp BCCTTTCCCBSS
T ss_pred ccCCCCCcccCc
Confidence 567777766643
No 151
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.92 E-value=24 Score=22.31 Aligned_cols=26 Identities=31% Similarity=0.667 Sum_probs=17.5
Q ss_pred ccCCcccccccc---------------ccccccccCceecc
Q psy7966 93 IAFCDACHKLLF---------------SGHLCRTCGFKFHR 118 (194)
Q Consensus 93 ptfCd~C~klL~---------------QG~kCk~Cg~~~Hk 118 (194)
+--|+.|++... .-|+|..|+..|-.
T Consensus 17 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp SBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 445888877431 23889999887754
No 152
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=30.86 E-value=98 Score=21.97 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=34.2
Q ss_pred ceEEEEcC---CCCeeeEEeec-CCcHHHHHHHHHHhcCCCCCccE
Q psy7966 2 ILLRAQLP---NQQRTSVHIRK-GQTLLEALSKAMKLRNLKPEMCT 43 (194)
Q Consensus 2 ~~irv~LP---n~QrT~V~v~~-G~tl~~aL~Kalk~R~L~~~~C~ 43 (194)
+.|.|-.| +++.-.++|.| -.|+.+--.+.-..-|+.++.=-
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Qr 73 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQK 73 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSE
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeE
Confidence 56788888 77788899998 99999888888888888776533
No 153
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=30.69 E-value=24 Score=23.53 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=22.1
Q ss_pred ccCCccccccccccccccccCceecccccc
Q psy7966 93 IAFCDACHKLLFSGHLCRTCGFKFHRACNL 122 (194)
Q Consensus 93 ptfCd~C~klL~QG~kCk~Cg~~~HkrC~~ 122 (194)
-.+|..|+..- .=+.|+.|...||..|..
T Consensus 8 ~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~ 36 (66)
T 1xwh_A 8 EDECAVCRDGG-ELICCDGCPRAFHLACLS 36 (66)
T ss_dssp CCSBSSSSCCS-SCEECSSCCCEECTTTSS
T ss_pred CCCCccCCCCC-CEEEcCCCChhhcccccC
Confidence 36788887531 225899999999999976
No 154
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=30.63 E-value=1e+02 Score=20.63 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=33.9
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCcc
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMC 42 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C 42 (194)
+.|.|-..+++.-.|+|.+-.|+.+--.+.-++-++.++.-
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q 46 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ 46 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 45777778888889999999999998887777888877653
No 155
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=30.41 E-value=16 Score=19.38 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=8.9
Q ss_pred ccccccCceeccc
Q psy7966 107 HLCRTCGFKFHRA 119 (194)
Q Consensus 107 ~kCk~Cg~~~Hkr 119 (194)
|+|..|+..|-.+
T Consensus 8 ~~C~~C~k~f~~~ 20 (35)
T 1srk_A 8 FVCRICLSAFTTK 20 (35)
T ss_dssp EECSSSCCEESSH
T ss_pred eeCCCCCcccCCH
Confidence 6777787776543
No 156
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.00 E-value=24 Score=22.06 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=17.4
Q ss_pred CccCCcccccccc---------------ccccccccCceecc
Q psy7966 92 AIAFCDACHKLLF---------------SGHLCRTCGFKFHR 118 (194)
Q Consensus 92 ~ptfCd~C~klL~---------------QG~kCk~Cg~~~Hk 118 (194)
.|-.|+.|++... .-|+|..|+..|-.
T Consensus 8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCC
Confidence 3456888876421 23788888887754
No 157
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=29.92 E-value=20 Score=25.35 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=25.1
Q ss_pred cCCcc--ccccccccccccccCceecccccccccccccc
Q psy7966 94 AFCDA--CHKLLFSGHLCRTCGFKFHRACNLAVPYLCQV 130 (194)
Q Consensus 94 tfCd~--C~klL~QG~kCk~Cg~~~HkrC~~~Vp~~C~~ 130 (194)
.-|.. |++.-|-+|+|+.|+.+|=..=...-.-.|..
T Consensus 15 ~~Cs~~~C~~~dflpf~C~~C~~~FC~~HR~~e~H~C~~ 53 (75)
T 1wys_A 15 QHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSE 53 (75)
T ss_dssp CCCSCTTTCCCSCCCEECTTTCCEECSTTCSSGGGTCCC
T ss_pred CCcCcccCCCccceeeECcccCcCcCcccCCccccCCCC
Confidence 34766 98887779999999988843333344445543
No 158
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=29.83 E-value=26 Score=23.11 Aligned_cols=28 Identities=29% Similarity=0.581 Sum_probs=21.2
Q ss_pred cCCccccccccccccccccCceecccccc
Q psy7966 94 AFCDACHKLLFSGHLCRTCGFKFHRACNL 122 (194)
Q Consensus 94 tfCd~C~klL~QG~kCk~Cg~~~HkrC~~ 122 (194)
.+|..|++.- .=+.|+.|...||..|..
T Consensus 10 ~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ 37 (61)
T 1mm2_A 10 EFCRVCKDGG-ELLCCDTCPSSYHIHCLN 37 (61)
T ss_dssp SSCTTTCCCS-SCBCCSSSCCCBCSSSSS
T ss_pred CcCCCCCCCC-CEEEcCCCCHHHcccccC
Confidence 5688887521 226899999999999975
No 159
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.80 E-value=17 Score=19.53 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=8.2
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elv_A 10 YDCHICERKFKN 21 (36)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCccCC
Confidence 677777776654
No 160
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=29.75 E-value=28 Score=23.62 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=25.1
Q ss_pred CccCCcccccccccc--ccccccCceeccccccccc
Q psy7966 92 AIAFCDACHKLLFSG--HLCRTCGFKFHRACNLAVP 125 (194)
Q Consensus 92 ~ptfCd~C~klL~QG--~kCk~Cg~~~HkrC~~~Vp 125 (194)
...+| .|++.-..+ +.|+.|..=||-.|.....
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~ 52 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRK 52 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCc
Confidence 46889 888754433 5899999999999986544
No 161
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=29.74 E-value=38 Score=25.81 Aligned_cols=27 Identities=7% Similarity=0.267 Sum_probs=23.9
Q ss_pred eeeEEeecCCcHHHHHHHHHHhcCCCC
Q psy7966 13 RTSVHIRKGQTLLEALSKAMKLRNLKP 39 (194)
Q Consensus 13 rT~V~v~~G~tl~~aL~Kalk~R~L~~ 39 (194)
.-++.+.||..|.++|.+.++.+++.-
T Consensus 11 ~~~lrl~~Gedl~~~i~~~~~~~~i~~ 37 (146)
T 2h6l_A 11 GFLLRLDYGKDLVRQIEEFLEEKGIHA 37 (146)
T ss_dssp EEEEECCTTSBHHHHHHHHHHHHTCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCE
Confidence 446799999999999999999999863
No 162
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.72 E-value=19 Score=19.44 Aligned_cols=12 Identities=33% Similarity=0.838 Sum_probs=8.1
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elp_A 10 MKCPYCDFYFMK 21 (37)
T ss_dssp EECSSSSCEECS
T ss_pred eECCCCChhhcc
Confidence 677777776654
No 163
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.67 E-value=24 Score=23.99 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=20.4
Q ss_pred cCCccCCccccccccccccccccCceeccccc
Q psy7966 90 FFAIAFCDACHKLLFSGHLCRTCGFKFHRACN 121 (194)
Q Consensus 90 f~~ptfCd~C~klL~QG~kCk~Cg~~~HkrC~ 121 (194)
+.....|..|++.|..|..-..-+..+|..|-
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF 43 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCF 43 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTC
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccC
Confidence 44567799999988755444445556666553
No 164
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=29.49 E-value=1.2e+02 Score=22.92 Aligned_cols=47 Identities=23% Similarity=0.144 Sum_probs=35.9
Q ss_pred EEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCC-CCCccEEEecCCCCc
Q psy7966 4 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL-KPEMCTAYDSNTGVS 52 (194)
Q Consensus 4 irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L-~~~~C~Vy~~~~~~~ 52 (194)
||..-=|+|--.|+.+-- +..+|.||||+-+| .|+-=.|+...++.-
T Consensus 3 LrFIacnGQTRaVq~~~~--y~~~L~~ALkKF~ledpskw~Vcvtqssr~ 50 (110)
T 1k8r_B 3 LRFIACNGQTRAVQSRGD--YQKTLAIALKKFSLEDASKFIVCVSQSSRI 50 (110)
T ss_dssp EEEECSTTCEEEEECCSC--HHHHHHHHHHHHTCCCTTSEEEEEECSSSE
T ss_pred eEEeecCCceEEeeehhh--HHHHHHHHHHHcCCCChhHeEEEEecCceE
Confidence 566667888888887755 45999999999999 566677887776443
No 165
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.54 E-value=11 Score=19.03 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=8.2
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 678888766643
No 166
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.28 E-value=18 Score=19.40 Aligned_cols=12 Identities=17% Similarity=0.595 Sum_probs=9.1
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elq_A 10 FKCSLCEYATRS 21 (36)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 688888877754
No 167
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=29.24 E-value=29 Score=22.69 Aligned_cols=34 Identities=26% Similarity=0.573 Sum_probs=25.2
Q ss_pred CccCCcccccccc-cc--ccccccCceeccccccccc
Q psy7966 92 AIAFCDACHKLLF-SG--HLCRTCGFKFHRACNLAVP 125 (194)
Q Consensus 92 ~ptfCd~C~klL~-QG--~kCk~Cg~~~HkrC~~~Vp 125 (194)
..++|..|++.-- .+ +.|+.|..=||-+|.....
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~ 41 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITP 41 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcCh
Confidence 4578888877542 23 4899999999999986543
No 168
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.79 E-value=21 Score=24.77 Aligned_cols=26 Identities=19% Similarity=0.522 Sum_probs=18.9
Q ss_pred cCCccccccc-c--------------ccccccccCceeccc
Q psy7966 94 AFCDACHKLL-F--------------SGHLCRTCGFKFHRA 119 (194)
Q Consensus 94 tfCd~C~klL-~--------------QG~kCk~Cg~~~Hkr 119 (194)
-.|+.|++.. . .-|+|..|+..|-.+
T Consensus 29 h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp EECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSH
T ss_pred EECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCH
Confidence 4599998843 2 238999999888643
No 169
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=28.71 E-value=1.2e+02 Score=19.92 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=34.5
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY 45 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy 45 (194)
+.|.|-.++++.-.++|.+-.|+.+--.+.-+.-++.++.-..+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~ 51 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE 51 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE
Confidence 45677777887778999999999988888888888887764433
No 170
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.48 E-value=18 Score=19.19 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=8.8
Q ss_pred ccccccCceeccc
Q psy7966 107 HLCRTCGFKFHRA 119 (194)
Q Consensus 107 ~kCk~Cg~~~Hkr 119 (194)
|+|..|+..|-.+
T Consensus 10 ~~C~~C~k~f~~~ 22 (36)
T 2elt_A 10 YKCPQCSYASAIK 22 (36)
T ss_dssp EECSSSSCEESSH
T ss_pred CCCCCCCcccCCH
Confidence 6777787776543
No 171
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.43 E-value=22 Score=25.54 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=25.4
Q ss_pred ceeeccccCCccCCcccccccc------------c-------cccccccCceeccc
Q psy7966 83 HNITRRTFFAIAFCDACHKLLF------------S-------GHLCRTCGFKFHRA 119 (194)
Q Consensus 83 H~F~~~Tf~~ptfCd~C~klL~------------Q-------G~kCk~Cg~~~Hkr 119 (194)
|+-..++--.|-.|+.|++..- . -|+|..||..|-.+
T Consensus 8 ~~~~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~ 63 (102)
T 2ghf_A 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63 (102)
T ss_dssp TTTTCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESST
T ss_pred cccccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCH
Confidence 5566667777778999977421 1 27899998877543
No 172
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=28.30 E-value=1.2e+02 Score=22.58 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=38.9
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCC-CccEEEecCCCCc
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP-EMCTAYDSNTGVS 52 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~-~~C~Vy~~~~~~~ 52 (194)
++.|||.|+.-.++|.++...|.++-|.-+-.+=++.. ++.-|-....|.+
T Consensus 10 i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk 61 (104)
T 1wgy_A 10 IFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEK 61 (104)
T ss_dssp CCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCC
T ss_pred eEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcE
Confidence 56899999998889999999999888777766666654 5555555556665
No 173
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=28.29 E-value=36 Score=24.86 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=18.5
Q ss_pred cCCCCee-eEEeecCCcHHHHHHHH
Q psy7966 8 LPNQQRT-SVHIRKGQTLLEALSKA 31 (194)
Q Consensus 8 LPn~QrT-~V~v~~G~tl~~aL~Ka 31 (194)
+|++|+. .+++.+|.|+.|||...
T Consensus 21 ~p~rq~~~~~~v~~g~TV~daI~~~ 45 (97)
T 2hj1_A 21 FPERYYLKSFQVDEGITVQTAITQS 45 (97)
T ss_dssp ETTEEEEEEEEEETTCBHHHHHHHH
T ss_pred CCCCCEEEEEEcCCCCcHHHHHHHc
Confidence 6776654 46788999999999864
No 174
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=28.13 E-value=25 Score=26.00 Aligned_cols=25 Identities=32% Similarity=0.699 Sum_probs=18.4
Q ss_pred ccCCcccccccc----cc-ccccccCceec
Q psy7966 93 IAFCDACHKLLF----SG-HLCRTCGFKFH 117 (194)
Q Consensus 93 ptfCd~C~klL~----QG-~kCk~Cg~~~H 117 (194)
.-.|.+|++.=. -| .+|+.|++.|=
T Consensus 36 ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 36 KYFCEFCGKFAVKRKAVGIWGCKDCGKVKA 65 (92)
T ss_dssp CBCCTTTCSSCBEEEETTEEECSSSCCEEE
T ss_pred cccCcccCCCeeEecCcceEEcCCCCCEEe
Confidence 346999988644 44 49999998774
No 175
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.98 E-value=27 Score=20.98 Aligned_cols=11 Identities=18% Similarity=0.144 Sum_probs=8.0
Q ss_pred ccccccCceec
Q psy7966 107 HLCRTCGFKFH 117 (194)
Q Consensus 107 ~kCk~Cg~~~H 117 (194)
|+|..|+..|-
T Consensus 42 ~~C~~C~k~F~ 52 (54)
T 2eps_A 42 HKCQVWVSGPS 52 (54)
T ss_dssp CCSSSSCCSSC
T ss_pred ccCCCCCCCCC
Confidence 67888877664
No 176
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=27.96 E-value=45 Score=25.26 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=23.9
Q ss_pred eeeEEeecCCcHHHHHHHHHHhcCCCC
Q psy7966 13 RTSVHIRKGQTLLEALSKAMKLRNLKP 39 (194)
Q Consensus 13 rT~V~v~~G~tl~~aL~Kalk~R~L~~ 39 (194)
.-++.+.||..|.++|.+.++.+++.-
T Consensus 11 ~~~lrl~~Gedl~~~i~~~~~~~~i~~ 37 (143)
T 2dt4_A 11 TYLFRVPEGEELLTYIKNFCKKEGIET 37 (143)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHTCCS
T ss_pred EEEEEECCCCcHHHHHHHHHHHcCCCE
Confidence 346799999999999999999999864
No 177
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=27.69 E-value=59 Score=27.07 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=31.0
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHh-----cCCCCCccEEEecC
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKL-----RNLKPEMCTAYDSN 48 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~-----R~L~~~~C~Vy~~~ 48 (194)
.|.+..++.+-.+|++.+|.||-||+.++=-. |+=.+-.|.|....
T Consensus 5 ~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v~~ 55 (338)
T 1krh_A 5 QVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCES 55 (338)
T ss_dssp EEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEE
T ss_pred EEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEEec
Confidence 45566666777899999999999998754100 12245568887743
No 178
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=27.63 E-value=1.3e+02 Score=20.34 Aligned_cols=41 Identities=7% Similarity=0.143 Sum_probs=34.4
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCcc
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMC 42 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C 42 (194)
+.|.|-..+++.-.|+|.+..|+.+--.+.-++-|+.++.-
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q 58 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQ 58 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhE
Confidence 56777778888889999999999998888888889887753
No 179
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=27.62 E-value=1.3e+02 Score=19.51 Aligned_cols=45 Identities=7% Similarity=-0.026 Sum_probs=35.8
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEe
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 46 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~ 46 (194)
+.|.|--.+++.-.++|.+-.|+.+.-.+.-++.|+.++.-..+-
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 456677788888889999999999988888888999887654433
No 180
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.45 E-value=19 Score=19.15 Aligned_cols=12 Identities=58% Similarity=1.276 Sum_probs=7.3
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elr_A 10 HLCDMCGKKFKS 21 (36)
T ss_dssp CBCTTTCCBCSS
T ss_pred eecCcCCCCcCc
Confidence 566667665543
No 181
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=27.24 E-value=22 Score=23.52 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=22.7
Q ss_pred ccCCccccccccccccccccCceeccccccc
Q psy7966 93 IAFCDACHKLLFSGHLCRTCGFKFHRACNLA 123 (194)
Q Consensus 93 ptfCd~C~klL~QG~kCk~Cg~~~HkrC~~~ 123 (194)
..+|..|++. -.=+.|+.|...||..|..-
T Consensus 11 ~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 11 QDYCEVCQQG-GEIILCDTCPRAYHMVCLDP 40 (61)
T ss_dssp CSSCTTTSCC-SSEEECSSSSCEEEHHHHCT
T ss_pred CCCCccCCCC-CcEEECCCCChhhhhhccCC
Confidence 4678888763 12357999999999999753
No 182
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=27.18 E-value=20 Score=25.52 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=24.0
Q ss_pred CccCCccccccc-c---ccccccccCceecccccc
Q psy7966 92 AIAFCDACHKLL-F---SGHLCRTCGFKFHRACNL 122 (194)
Q Consensus 92 ~ptfCd~C~klL-~---QG~kCk~Cg~~~HkrC~~ 122 (194)
.-.+|..|++.- . +=+.|+.|...||..|..
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~ 58 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 58 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCC
Confidence 347899998653 1 336899999999999964
No 183
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=26.98 E-value=15 Score=19.52 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=7.8
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..||..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (32)
T 2kfq_A 3 FACPACPKRFMR 14 (32)
T ss_dssp SSSSSSCTTHHH
T ss_pred CCCCCCCcccCC
Confidence 577777765543
No 184
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.98 E-value=17 Score=19.57 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=8.1
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elo_A 10 YSCPVCEKSFSE 21 (37)
T ss_dssp CEETTTTEECSS
T ss_pred cCCCCCCCccCC
Confidence 677777766654
No 185
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.93 E-value=29 Score=22.05 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=18.9
Q ss_pred ccCCccCCcccccccc-------------c----cccccccCceecc
Q psy7966 89 TFFAIAFCDACHKLLF-------------S----GHLCRTCGFKFHR 118 (194)
Q Consensus 89 Tf~~ptfCd~C~klL~-------------Q----G~kCk~Cg~~~Hk 118 (194)
+-..|--|+.|++... . -|+|..|+..|-.
T Consensus 11 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~ 57 (77)
T 2ct1_A 11 SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIAR 57 (77)
T ss_dssp SCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESS
T ss_pred CCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCC
Confidence 3345566888876421 1 2788888877654
No 186
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=26.51 E-value=48 Score=25.64 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=25.9
Q ss_pred CCCCee-eEEeecCCcHHHHHHHHHHhcCCCCC
Q psy7966 9 PNQQRT-SVHIRKGQTLLEALSKAMKLRNLKPE 40 (194)
Q Consensus 9 Pn~QrT-~V~v~~G~tl~~aL~Kalk~R~L~~~ 40 (194)
|+.-|+ ++.+.||..|.++|.+.++.+++.--
T Consensus 15 ~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a 47 (154)
T 2hx0_A 15 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAA 47 (154)
T ss_dssp CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSE
T ss_pred CCCccEEEEEECCCCcHHHHHHHHHHHhCCCEE
Confidence 444443 56899999999999999999998643
No 187
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.35 E-value=21 Score=19.11 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=8.8
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2els_A 10 FTCEYCNKVFKF 21 (36)
T ss_dssp EECTTTCCEESS
T ss_pred EECCCCCceeCC
Confidence 678888877754
No 188
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=26.25 E-value=1.3e+02 Score=21.53 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=33.6
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCc
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM 41 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~ 41 (194)
+.|.|-.++++...|+|.+-.|+.+--.+.-++-++.++.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 75 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 75 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHH
Confidence 5677888898888999999999999777777778887765
No 189
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=26.22 E-value=1.3e+02 Score=20.80 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=34.5
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCcc
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMC 42 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C 42 (194)
+.|.|-.++++.-.|+|.+-.|+.+--.+.-++-++.++.-
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q 63 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ 63 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHE
Confidence 56788878998889999999999998888888888877653
No 190
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=31.97 E-value=14 Score=18.55 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=7.0
Q ss_pred ccccccCceec
Q psy7966 107 HLCRTCGFKFH 117 (194)
Q Consensus 107 ~kCk~Cg~~~H 117 (194)
|+|..|+..|-
T Consensus 4 ~~C~~C~k~f~ 14 (30)
T 2lvr_A 4 YVCIHCQRQFA 14 (30)
Confidence 56777776554
No 191
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.83 E-value=31 Score=21.98 Aligned_cols=11 Identities=36% Similarity=1.050 Sum_probs=8.6
Q ss_pred ccccccCceec
Q psy7966 107 HLCRTCGFKFH 117 (194)
Q Consensus 107 ~kCk~Cg~~~H 117 (194)
|+|..|+..|-
T Consensus 48 ~~C~~C~~~f~ 58 (86)
T 1x6h_A 48 FVCSKCGKTFT 58 (86)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCChhC
Confidence 78888887764
No 192
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=25.65 E-value=28 Score=24.58 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=17.6
Q ss_pred ccCCcccccccc----cc-ccccccCceec
Q psy7966 93 IAFCDACHKLLF----SG-HLCRTCGFKFH 117 (194)
Q Consensus 93 ptfCd~C~klL~----QG-~kCk~Cg~~~H 117 (194)
.-.|.+|++.-. -| .+|+.|++.+=
T Consensus 26 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp CBCCSSCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred CccCCCCCCceeEecCCCeEECCCCCCEEe
Confidence 356889987643 44 49999997763
No 193
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=25.58 E-value=1.6e+02 Score=20.90 Aligned_cols=42 Identities=7% Similarity=0.150 Sum_probs=33.8
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCT 43 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~ 43 (194)
+.|.|-.++++.-.|+|.+-.|+.+--.+.-+.-++.++.-.
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qr 77 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 77 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEE
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEE
Confidence 567777788888899999999998887777777888776533
No 194
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=25.48 E-value=1.5e+02 Score=19.51 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=39.5
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCCCcc
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSL 53 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~~~i 53 (194)
+.|+|--.++..-.+.|++..++..-..+-.+++|+.++.....- +|..|
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f--dG~~l 51 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF--DGQPI 51 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE--TTEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE--CCEEc
Confidence 578888888888899999999999988888999999887644333 34444
No 195
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.40 E-value=30 Score=23.44 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=21.5
Q ss_pred cccCCccCCccccc-cc-c-----------cc----ccccccCceeccc
Q psy7966 88 RTFFAIAFCDACHK-LL-F-----------SG----HLCRTCGFKFHRA 119 (194)
Q Consensus 88 ~Tf~~ptfCd~C~k-lL-~-----------QG----~kCk~Cg~~~Hkr 119 (194)
++-..+-.|+.|++ |. . .| |+|..|+..|-.+
T Consensus 19 h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~ 67 (98)
T 2gqj_A 19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSK 67 (98)
T ss_dssp TTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCH
T ss_pred hccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCH
Confidence 34455667999977 33 2 33 8999999887654
No 196
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=25.06 E-value=21 Score=19.12 Aligned_cols=12 Identities=33% Similarity=0.802 Sum_probs=8.3
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..||..|-.
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 577888776653
No 197
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.02 E-value=1.4e+02 Score=22.66 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=33.9
Q ss_pred ceEEEE-cCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCc-cEEEe
Q psy7966 2 ILLRAQ-LPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM-CTAYD 46 (194)
Q Consensus 2 ~~irv~-LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~-C~Vy~ 46 (194)
+++.|. .|.+|.-+|++.+..|+.|-=++.-+.-++.++. +-.|.
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC
Confidence 467776 8999999999999999766544444445787776 77776
No 198
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=24.88 E-value=1.6e+02 Score=19.80 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=35.1
Q ss_pred ceEEEEcCCC-CeeeEEeecCCcHHHHHHHHHHhcCCCCCccE
Q psy7966 2 ILLRAQLPNQ-QRTSVHIRKGQTLLEALSKAMKLRNLKPEMCT 43 (194)
Q Consensus 2 ~~irv~LPn~-QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~ 43 (194)
+.|+|--.++ +.-.+.|++-.++..-..+-.+++|+.++.-.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~r 50 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLS 50 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEE
Confidence 5678887888 47789999999999999998999999887533
No 199
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=24.79 E-value=37 Score=26.93 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=40.6
Q ss_pred EEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCC-------CCCccEEEecCCCCc-ccCCCCCCCCCCccee
Q psy7966 4 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL-------KPEMCTAYDSNTGVS-LQWDTDSDHLPTTEIR 68 (194)
Q Consensus 4 irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L-------~~~~C~Vy~~~~~~~-i~w~tD~~~L~~eel~ 68 (194)
|++.+ |++.-.|+|.||+||-|+|...+...+. ..-.|.|...+ .. .+.-+.+..+.|.++.
T Consensus 6 i~~~v-NG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~vdG--~~v~sC~~~~~~~~G~~I~ 75 (163)
T 1ffv_A 6 ITVNV-NGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDG--RSVKSCTHLAVQCDGSEVL 75 (163)
T ss_dssp EEEEE-TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETT--EEEEGGGSBGGGGTTCEEE
T ss_pred EEEEE-CCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEECC--cEecchHhhHHHhCCceEE
Confidence 44444 7778889999999999999876533222 22347888744 44 3566666666666554
No 200
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.73 E-value=29 Score=25.13 Aligned_cols=25 Identities=28% Similarity=0.751 Sum_probs=18.1
Q ss_pred ccCCcccccccc----cc-ccccccCceec
Q psy7966 93 IAFCDACHKLLF----SG-HLCRTCGFKFH 117 (194)
Q Consensus 93 ptfCd~C~klL~----QG-~kCk~Cg~~~H 117 (194)
.-.|.+|++.-. -| .+|+.|++.|=
T Consensus 35 ky~CpfCGk~~vkR~a~GIW~C~kCg~~~A 64 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTGIWQCQKCGATFA 64 (83)
T ss_dssp CBCCSSSCSSCEEEEETTEEEETTTCCEEE
T ss_pred ccCCCCCCCceeEecCcCeEEcCCCCCEEe
Confidence 456999988643 44 49999998764
No 201
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.66 E-value=37 Score=21.56 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=17.6
Q ss_pred CccCCcccccccc---------------ccccccccCceecc
Q psy7966 92 AIAFCDACHKLLF---------------SGHLCRTCGFKFHR 118 (194)
Q Consensus 92 ~ptfCd~C~klL~---------------QG~kCk~Cg~~~Hk 118 (194)
.+-.|+.|++... .-|+|..|+..|-.
T Consensus 17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 3456888876431 23788888877754
No 202
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.65 E-value=25 Score=23.87 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=23.2
Q ss_pred ccCCcccccccccc--ccccccCceecccccccc
Q psy7966 93 IAFCDACHKLLFSG--HLCRTCGFKFHRACNLAV 124 (194)
Q Consensus 93 ptfCd~C~klL~QG--~kCk~Cg~~~HkrC~~~V 124 (194)
..+| .|++.-..+ +.|+.|..=||-.|....
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~ 48 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGIS 48 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCC
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccc
Confidence 4778 787754422 589999999999998643
No 203
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=24.35 E-value=41 Score=28.21 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=28.0
Q ss_pred cCCcHHHHHHHHHHhcCCCCCccEEEecCCCC
Q psy7966 20 KGQTLLEALSKAMKLRNLKPEMCTAYDSNTGV 51 (194)
Q Consensus 20 ~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~~ 51 (194)
.|.|+.||+.+||+.-|++.+.-.+-.+..|.
T Consensus 10 ~gkTveeAi~~Al~~L~v~~d~l~~eVleeg~ 41 (225)
T 3gku_A 10 TAKTVEEAVTKALIELQTTSDKLTYEIVEKGS 41 (225)
T ss_dssp EESSHHHHHHHHHHHHTCCGGGEEEEEEECCB
T ss_pred EECCHHHHHHHHHHHhCCCHHHEEEEEEecCC
Confidence 59999999999999999999988887776554
No 204
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.30 E-value=1.7e+02 Score=20.34 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=32.4
Q ss_pred ceEEEEcCCC----CeeeEEeecCCcHHHHHHHHHHhcCCCCCccE
Q psy7966 2 ILLRAQLPNQ----QRTSVHIRKGQTLLEALSKAMKLRNLKPEMCT 43 (194)
Q Consensus 2 ~~irv~LPn~----QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~ 43 (194)
|.|.|..++. +.-+|+|.+..|+.+--.+.-++-|+.++.=.
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qr 53 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQ 53 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeE
Confidence 5677877765 46679999999999888877778888776533
No 205
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.28 E-value=37 Score=22.79 Aligned_cols=29 Identities=21% Similarity=0.646 Sum_probs=20.0
Q ss_pred ccCCcccccc-cc-cccccccc-Cceeccccc
Q psy7966 93 IAFCDACHKL-LF-SGHLCRTC-GFKFHRACN 121 (194)
Q Consensus 93 ptfCd~C~kl-L~-QG~kCk~C-g~~~HkrC~ 121 (194)
+..||.|+.. |. ..|+|..| +|..=..|.
T Consensus 11 ~~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~ 42 (63)
T 2e5r_A 11 PVECSYCHSESMMGFRYRCQQCHNYQLCQDCF 42 (63)
T ss_dssp CSCCSSSCCCSSCSCEEEESSCSSCEECHHHH
T ss_pred CCCCcCCCCcceecceEEecCCCCchhHHHHH
Confidence 4779999976 44 45899988 455444553
No 206
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=23.92 E-value=24 Score=23.77 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=23.7
Q ss_pred CccCCccccccccc--cccccccCceeccccccc
Q psy7966 92 AIAFCDACHKLLFS--GHLCRTCGFKFHRACNLA 123 (194)
Q Consensus 92 ~ptfCd~C~klL~Q--G~kCk~Cg~~~HkrC~~~ 123 (194)
...+|..|++.-.. =+.|+.|..-||-.|...
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCC
Confidence 34679889775331 258999999999999753
No 207
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=23.87 E-value=24 Score=19.37 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=8.8
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..||..|-.
T Consensus 7 ~~C~~C~k~f~~ 18 (39)
T 1njq_A 7 YTCSFCKREFRS 18 (39)
T ss_dssp EECTTTCCEESS
T ss_pred eECCCCCcccCC
Confidence 678888877754
No 208
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=23.58 E-value=37 Score=24.47 Aligned_cols=28 Identities=25% Similarity=0.575 Sum_probs=21.4
Q ss_pred CCcccccccc--ccccccccCceecccccc
Q psy7966 95 FCDACHKLLF--SGHLCRTCGFKFHRACNL 122 (194)
Q Consensus 95 fCd~C~klL~--QG~kCk~Cg~~~HkrC~~ 122 (194)
+|..|++.-- +=+.|+.|...||..|..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ 85 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQ 85 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcC
Confidence 5777766432 347999999999999975
No 209
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=23.51 E-value=40 Score=25.36 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=18.4
Q ss_pred cCCCCeeeEEeecCCcHHHHHHHH
Q psy7966 8 LPNQQRTSVHIRKGQTLLEALSKA 31 (194)
Q Consensus 8 LPn~QrT~V~v~~G~tl~~aL~Ka 31 (194)
.+|+ +.+|+|.+|.||-+|+.++
T Consensus 33 ~~~g-~~~v~v~~g~tlL~aa~~~ 55 (128)
T 1doi_A 33 DDED-YGSLEVNEGEYILEAAEAQ 55 (128)
T ss_dssp CTTT-EEEEECCTTSCHHHHHHHT
T ss_pred EeCC-cEEEEECCCCcHHHHHHHc
Confidence 5666 4489999999999998754
No 210
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=23.48 E-value=1e+02 Score=21.33 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=35.8
Q ss_pred eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCCCcccCCCCCCCCCCccee
Q psy7966 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIR 68 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~~~i~w~tD~~~L~~eel~ 68 (194)
.|.|++|++ .++++..|.|+.|... ++ ..+|--.+.+ ..-.|..+++++.+.. |..+.
T Consensus 7 ~i~v~tP~G--~~~~lp~GaT~~D~A~-~I-h~~lg~~~v~--AkVNG~~v~L~~~L~~--gd~Ve 64 (78)
T 3hvz_A 7 EVFVFTPKG--DVISLPIGSTVIDFAY-AI-HSAVGNRMIG--AKVDGRIVPIDYKVKT--GEIID 64 (78)
T ss_dssp EEEEECTTS--CEEEEETTCBHHHHHH-HH-CHHHHHTEEE--EEETTEEECTTCBCCT--TCBEE
T ss_pred eEEEECCCC--CEEEecCCCCHHHHHH-Hh-hhhhhcceEE--EEECCEEcCCCcccCC--CCEEE
Confidence 588999998 6789999999999543 32 2222222222 2235666777765533 44444
No 211
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.47 E-value=1.3e+02 Score=21.71 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=34.2
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCc
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM 41 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~ 41 (194)
|.|.|-.++++.-.|+|.+..|+.+.-.+.-++-|+.++.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~ 40 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHH
Confidence 4678888888888899999999999888888888987765
No 212
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=23.18 E-value=1.1e+02 Score=19.67 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=28.2
Q ss_pred EEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCCCc-ccCCCCCCCCCCccee
Q psy7966 16 VHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVS-LQWDTDSDHLPTTEIR 68 (194)
Q Consensus 16 V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~~~-i~w~tD~~~L~~eel~ 68 (194)
+++ +|.|+.+.|... ++.++..+|...+.--+ -+|++..-. .|+++.
T Consensus 9 ~~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~-dgD~v~ 56 (64)
T 2cu3_A 9 RPL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLEVPDRPLR-DGDVVE 56 (64)
T ss_dssp ECC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGGCCCCCCC-TTCEEE
T ss_pred EEc-CCCcHHHHHHHc----CCCCCcEEEEECCEECCccccCCcCCC-CCCEEE
Confidence 466 899999887643 67788888877552221 235544322 455544
No 213
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=23.09 E-value=94 Score=23.68 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=26.0
Q ss_pred CCeeeEEeecCCcHHHHHHHHHHhcCCCCC
Q psy7966 11 QQRTSVHIRKGQTLLEALSKAMKLRNLKPE 40 (194)
Q Consensus 11 ~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~ 40 (194)
.+.-.+.++||..|.++|.+.++..++.--
T Consensus 12 g~~~~~rL~~Gedl~~~l~~~~~~~~i~~a 41 (147)
T 3hwu_A 12 PTGYLMVLRHGDNVLQNLEQLARDEHIPSA 41 (147)
T ss_dssp TTEEEEEEETTCBHHHHHHHHHHHTTCSEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHcCCCEE
Confidence 445678899999999999999999999743
No 214
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.93 E-value=27 Score=19.79 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=8.9
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 13 ~~C~~C~k~F~~ 24 (44)
T 2epv_A 13 YECNECGKAFIW 24 (44)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCc
Confidence 678888877754
No 215
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=22.91 E-value=25 Score=20.74 Aligned_cols=14 Identities=21% Similarity=0.679 Sum_probs=9.8
Q ss_pred cccccccCceeccc
Q psy7966 106 GHLCRTCGFKFHRA 119 (194)
Q Consensus 106 G~kCk~Cg~~~Hkr 119 (194)
-|+|..|+..|-.+
T Consensus 7 p~~C~~C~k~F~~~ 20 (48)
T 3iuf_A 7 PYACDICGKRYKNR 20 (48)
T ss_dssp CEECTTTCCEESSH
T ss_pred CEECCCcCcccCCH
Confidence 36788888777543
No 216
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=22.83 E-value=27 Score=19.25 Aligned_cols=12 Identities=42% Similarity=0.982 Sum_probs=9.1
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2epc_A 12 YLCGQCGKSFTQ 23 (42)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCC
Confidence 788888877754
No 217
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.80 E-value=37 Score=24.35 Aligned_cols=27 Identities=15% Similarity=0.422 Sum_probs=14.3
Q ss_pred cCCccccccccccccccccCceecccc
Q psy7966 94 AFCDACHKLLFSGHLCRTCGFKFHRAC 120 (194)
Q Consensus 94 tfCd~C~klL~QG~kCk~Cg~~~HkrC 120 (194)
..|..|++.|..++.-..-+..+|..|
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~wH~~C 30 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLKAIDQYWHEDC 30 (114)
T ss_dssp BCBSSSCSCBCSSEEEECSSSEECTTT
T ss_pred CCCcCCCCeeCCcEEEEECchhHHHhc
Confidence 457777777663333334444444433
No 218
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=22.70 E-value=35 Score=25.24 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=18.0
Q ss_pred ccCCcccccccc----cc-ccccccCceec
Q psy7966 93 IAFCDACHKLLF----SG-HLCRTCGFKFH 117 (194)
Q Consensus 93 ptfCd~C~klL~----QG-~kCk~Cg~~~H 117 (194)
.-.|.+|++.=. -| .+|+.|++.|=
T Consensus 36 ky~CpfCgk~~vkR~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 36 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 65 (92)
T ss_dssp CCCCSSSCSSCCEEEETTEEECTTTCCEEE
T ss_pred CCcCCCCCCceeeecccceEEcCCCCCEEe
Confidence 456899987643 44 49999998764
No 219
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=22.60 E-value=2.6e+02 Score=21.35 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=32.3
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCC
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP 39 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~ 39 (194)
++.|||.|+.-.++|.++...|+++-|.-+-.+-++.-
T Consensus 10 i~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e 47 (120)
T 2dhz_A 10 IFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSE 47 (120)
T ss_dssp EEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCS
T ss_pred EEEEEEeccCceEEEEEeccccHHHHHHHHHHHhcccc
Confidence 57899999999999999999999998887777766644
No 220
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.39 E-value=31 Score=24.33 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=18.6
Q ss_pred CccCCcccccc-cc---cc-ccccccCceecc
Q psy7966 92 AIAFCDACHKL-LF---SG-HLCRTCGFKFHR 118 (194)
Q Consensus 92 ~ptfCd~C~kl-L~---QG-~kCk~Cg~~~Hk 118 (194)
..-.|.+|++. +. -| .+|+.|++.|--
T Consensus 26 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 26 KKYKCPVCGFPKLKRASTSIWVCGHCGYKIAG 57 (73)
T ss_pred cCccCCCCCCceeEEEEeEEEECCCCCcEEEC
Confidence 34569999884 32 34 499999988753
No 221
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.38 E-value=38 Score=21.16 Aligned_cols=27 Identities=26% Similarity=0.821 Sum_probs=19.6
Q ss_pred CCccccc--ccc----ccccccccCceeccccc
Q psy7966 95 FCDACHK--LLF----SGHLCRTCGFKFHRACN 121 (194)
Q Consensus 95 fCd~C~k--lL~----QG~kCk~Cg~~~HkrC~ 121 (194)
.|-.|+. +.+ +-+.|..||+.+-.+=.
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~i 39 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVIEENII 39 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBCCCCCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCccccccc
Confidence 5999976 445 55899999987765443
No 222
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=22.23 E-value=86 Score=20.36 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=26.3
Q ss_pred eEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCCCc-ccCCC
Q psy7966 15 SVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVS-LQWDT 57 (194)
Q Consensus 15 ~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~~~-i~w~t 57 (194)
.+++..|.|+.+.|... ++.++..+|...+.--+ -+|++
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~ 48 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQWAQ 48 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHHHTT
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchhcCC
Confidence 45678899999988753 67788888887653222 34643
No 223
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=22.20 E-value=1.8e+02 Score=19.27 Aligned_cols=42 Identities=7% Similarity=-0.008 Sum_probs=33.3
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCT 43 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~ 43 (194)
+.|.|-.++++...++|.+..|+.+-=.+.-++-|+.++.--
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qr 59 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQR 59 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEE
Confidence 346666678888899999999999888887777888777533
No 224
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=22.13 E-value=67 Score=24.65 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=25.4
Q ss_pred CCeeeEEeecCCcHHHHHHHHHHhcCCCC
Q psy7966 11 QQRTSVHIRKGQTLLEALSKAMKLRNLKP 39 (194)
Q Consensus 11 ~QrT~V~v~~G~tl~~aL~Kalk~R~L~~ 39 (194)
...-++.+.||..|.++|.+.++.+++.-
T Consensus 15 gr~~~lrl~~Gedl~~~l~~~~~~~~i~~ 43 (149)
T 3htn_A 15 GNKYIVSINNHTEIVKALNAFCKEKGILS 43 (149)
T ss_dssp TTEEEEEECTTCBHHHHHHHHHHHHTCCS
T ss_pred CCEEEEEECCCChHHHHHHHHHHHcCCcE
Confidence 34567899999999999999999999874
No 225
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=22.05 E-value=72 Score=27.33 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=38.4
Q ss_pred CeeeEEeec-CCcHHHHHHHHHHhcCC-----------CCCccEEEecCCCCcccCCCCCCCCCCcceeeeeehhcCC
Q psy7966 12 QRTSVHIRK-GQTLLEALSKAMKLRNL-----------KPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVQERFPA 77 (194)
Q Consensus 12 QrT~V~v~~-G~tl~~aL~Kalk~R~L-----------~~~~C~Vy~~~~~~~i~w~tD~~~L~~eel~V~~~~~~p~ 77 (194)
|--.|+|.+ |+||-|||.++-...+. ..-.|+|-..+... .+..+.+....++.+.+|=+..||+
T Consensus 55 ~~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~InG~~~-laC~t~v~~~~~~~~tIepL~~~pV 131 (282)
T 3vr8_B 55 QKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENT-LACICNIDQNTSKTTKIYPLPHMFV 131 (282)
T ss_pred EEEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEECCEEe-cchhhhHhHhcCCcEEeccCCCCce
Confidence 567788998 99999999874332121 13457887754321 2444444433356666665545555
No 226
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.05 E-value=31 Score=19.34 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=9.0
Q ss_pred ccccccCceeccc
Q psy7966 107 HLCRTCGFKFHRA 119 (194)
Q Consensus 107 ~kCk~Cg~~~Hkr 119 (194)
|+|..|+..|-.+
T Consensus 13 ~~C~~C~k~f~~~ 25 (44)
T 2yu5_A 13 FKCSKCDRVFTQR 25 (44)
T ss_dssp EECSSSSCEESSS
T ss_pred eECCCCCchhCCH
Confidence 6778887776543
No 227
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.04 E-value=35 Score=23.44 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=16.0
Q ss_pred cCCcccccccc----ccccccccCcee
Q psy7966 94 AFCDACHKLLF----SGHLCRTCGFKF 116 (194)
Q Consensus 94 tfCd~C~klL~----QG~kCk~Cg~~~ 116 (194)
-.|..|+...- .+++|..||+..
T Consensus 22 Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred EECCCCCCeeecCCCCceECCCCCcEE
Confidence 34778876542 668999998653
No 228
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=22.02 E-value=33 Score=29.52 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCeeeEEeec---CCcHHHHHHHHHH
Q psy7966 2 ILLRAQLPNQQRTSVHIRK---GQTLLEALSKAMK 33 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~---G~tl~~aL~Kalk 33 (194)
+=||+|+|+...---.|.| -+||.|||...|-
T Consensus 200 IPiRIy~~~~~~iQ~~i~~~~~~~TLg~~L~~~lp 234 (274)
T 3vqi_A 200 LPVRVWTSNYAVLQPTVPVTDKELSVAELLDSIKL 234 (274)
T ss_dssp CCEEEECTTSCEECCCCBCC---CBHHHHHHTTTC
T ss_pred eeEEEEcCCCCeEecccCCCCccccHHHHHHHhcc
Confidence 3489999997222222345 7899999997654
No 229
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.96 E-value=31 Score=19.56 Aligned_cols=13 Identities=31% Similarity=1.004 Sum_probs=9.0
Q ss_pred ccccccCceeccc
Q psy7966 107 HLCRTCGFKFHRA 119 (194)
Q Consensus 107 ~kCk~Cg~~~Hkr 119 (194)
|+|..|+..|-.+
T Consensus 13 ~~C~~C~k~F~~~ 25 (46)
T 2en3_A 13 FQCKECGMNFSWS 25 (46)
T ss_dssp EECSSSCCEESSS
T ss_pred eeCcccChhhCCH
Confidence 6778887777543
No 230
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=21.77 E-value=1.5e+02 Score=21.27 Aligned_cols=44 Identities=7% Similarity=0.129 Sum_probs=34.3
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY 45 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy 45 (194)
+.|.|-.++++...++|.+..|+.+--.+.-++-|+.++.-...
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~ 120 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE
Confidence 45667777888889999999999987777777778877764433
No 231
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.67 E-value=1.8e+02 Score=20.98 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=41.6
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCCCcc-cCCCCC
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSL-QWDTDS 59 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~~~i-~w~tD~ 59 (194)
+.|+|.-.++..-.+.|++-.+|..-..+-.+++|+.++.....- +|..| +++|..
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F--dG~~l~~~~Tp~ 81 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF--DGQPINETDTPA 81 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES--SSSBCCTTSCTT
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE--CCEEcCCCCCHH
Confidence 567888788888889999999999999999999999887543332 34554 344443
No 232
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.47 E-value=29 Score=19.23 Aligned_cols=13 Identities=38% Similarity=0.902 Sum_probs=8.9
Q ss_pred ccccccCceeccc
Q psy7966 107 HLCRTCGFKFHRA 119 (194)
Q Consensus 107 ~kCk~Cg~~~Hkr 119 (194)
|+|..|+..|-.+
T Consensus 12 ~~C~~C~k~f~~~ 24 (42)
T 2en2_A 12 YKCETCGARFVQV 24 (42)
T ss_dssp EECTTTCCEESSH
T ss_pred EeCCCcChhhCCH
Confidence 6777787776543
No 233
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=21.46 E-value=25 Score=20.76 Aligned_cols=15 Identities=27% Similarity=0.817 Sum_probs=11.9
Q ss_pred cccccccCceecccc
Q psy7966 106 GHLCRTCGFKFHRAC 120 (194)
Q Consensus 106 G~kCk~Cg~~~HkrC 120 (194)
-|+|..||..|-.+.
T Consensus 8 p~~C~~CgK~F~~~s 22 (36)
T 1fv5_A 8 RFMCLPCGIAFSSPS 22 (36)
T ss_dssp CCEETTTTEECSCHH
T ss_pred CeECCCCCCccCCHh
Confidence 478999998887655
No 234
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=21.44 E-value=1.9e+02 Score=19.37 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=35.1
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY 45 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy 45 (194)
+.|.|-.++++...++|.+-.|+.+--.+.-+.-|+.++.--.+
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 48 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT 48 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE
Confidence 45677777888888999999999988888888888887764443
No 235
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.38 E-value=32 Score=22.94 Aligned_cols=29 Identities=28% Similarity=0.576 Sum_probs=19.4
Q ss_pred ccCCccccccccccccccccCceeccccc
Q psy7966 93 IAFCDACHKLLFSGHLCRTCGFKFHRACN 121 (194)
Q Consensus 93 ptfCd~C~klL~QG~kCk~Cg~~~HkrC~ 121 (194)
...|..|++.|..+..-..-+..+|..|-
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF 35 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCF 35 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSE
T ss_pred CCcCcCcCccccCceeEEeCCcccccccC
Confidence 45699999988755444556667776663
No 236
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=21.35 E-value=46 Score=22.20 Aligned_cols=10 Identities=40% Similarity=1.045 Sum_probs=5.2
Q ss_pred ccccccCcee
Q psy7966 107 HLCRTCGFKF 116 (194)
Q Consensus 107 ~kCk~Cg~~~ 116 (194)
|+|..|+..|
T Consensus 74 ~~C~~C~~~f 83 (106)
T 2ee8_A 74 FKCQECGKGF 83 (106)
T ss_dssp TSCSSSCCCC
T ss_pred eECCCcCCcc
Confidence 4555555444
No 237
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1
Probab=21.31 E-value=34 Score=20.78 Aligned_cols=16 Identities=38% Similarity=0.839 Sum_probs=13.9
Q ss_pred cccccceeeeccCccc
Q psy7966 175 LVCYPGIVQRRDCNNL 190 (194)
Q Consensus 175 ~~~~~~~~~~~~~~~~ 190 (194)
+.|-||-+-+.|||.-
T Consensus 2 ~~c~pG~ti~~dCNtC 17 (35)
T 1wo9_A 2 GECTPGQTKKQDCNTC 17 (35)
T ss_dssp CSCCTTCEEEETTEEE
T ss_pred CcCCCCCEEECCCCce
Confidence 5799999999999964
No 238
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.21 E-value=30 Score=19.22 Aligned_cols=12 Identities=33% Similarity=0.932 Sum_probs=8.0
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2eos_A 12 YPCEICGTRFRH 23 (42)
T ss_dssp BCCSSSCCCBSS
T ss_pred EECCCCCCccCC
Confidence 677777766654
No 239
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=21.14 E-value=31 Score=23.28 Aligned_cols=31 Identities=29% Similarity=0.607 Sum_probs=23.9
Q ss_pred cCCcccccccc---cccccc-ccCceecccccccc
Q psy7966 94 AFCDACHKLLF---SGHLCR-TCGFKFHRACNLAV 124 (194)
Q Consensus 94 tfCd~C~klL~---QG~kCk-~Cg~~~HkrC~~~V 124 (194)
..|-.|++..- .-..|+ .|..=||..|+..-
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt 43 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICTGMT 43 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCC
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhccCCC
Confidence 45888888764 345899 99999999997543
No 240
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.10 E-value=46 Score=21.69 Aligned_cols=11 Identities=18% Similarity=0.685 Sum_probs=6.9
Q ss_pred ccccccCceec
Q psy7966 107 HLCRTCGFKFH 117 (194)
Q Consensus 107 ~kCk~Cg~~~H 117 (194)
|+|..|+..|-
T Consensus 65 ~~C~~C~~~f~ 75 (96)
T 2dmd_A 65 FKCQICPYASR 75 (96)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCCccC
Confidence 66776666554
No 241
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=20.98 E-value=64 Score=22.17 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=37.6
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCC
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNT 49 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~ 49 (194)
+.||+-=|++|+. |+|-+.-|+.|-+.|..+.-++..+-=.+|....
T Consensus 5 m~lRvrs~~G~~R-i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~ 51 (80)
T 2pjh_A 5 IIIRVQSPDGVKR-ITATKRETAATFLKKVAKEFGFQNNGFSVYINRN 51 (80)
T ss_dssp CCCEEECSSEEEE-CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCC
T ss_pred EEEEEECCCCCEE-EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCC
Confidence 6799999999776 7899999999999999999888765444554443
No 242
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=20.74 E-value=46 Score=26.30 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=38.3
Q ss_pred CCcceeeeeehhcCCCCCccceeecccc-CCccCCcccccccc---ccccccccCceecccccc
Q psy7966 63 PTTEIRVEVQERFPAAINIEHNITRRTF-FAIAFCDACHKLLF---SGHLCRTCGFKFHRACNL 122 (194)
Q Consensus 63 ~~eel~V~~~~~~p~~~~~~H~F~~~Tf-~~ptfCd~C~klL~---QG~kCk~Cg~~~HkrC~~ 122 (194)
.|+.+.+++.. ..+.-+-....| .-.+.|.-|+..|. +-++|..||..--+|++.
T Consensus 114 ~GD~V~akVi~-----~~i~LS~k~~~lGvv~a~~~~~g~~m~~~~~~~~cp~~g~~e~RKva~ 172 (179)
T 3m7n_A 114 YLDILKARVIG-----DNLRLSTKEEEMGVLRALCSNCKTEMVREGDILKCPECGRVEKRKIST 172 (179)
T ss_dssp TTCEEEEEEEE-----TTTEEECCSTTCEEEECBCTTTCCBCEECSSSEECSSSCCEECCCBCT
T ss_pred CCCEEEEEEEC-----CeEEEEEecCCCCEEEecccccCCceEECCCEEECCCCCCEEEEeccc
Confidence 68888888874 111112222223 23788999999887 779999999999998864
No 243
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.72 E-value=34 Score=25.33 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=26.1
Q ss_pred ccCCccccccccccccccccCceeccccccccccccccc
Q psy7966 93 IAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLCQVE 131 (194)
Q Consensus 93 ptfCd~C~klL~QG~kCk~Cg~~~HkrC~~~Vp~~C~~~ 131 (194)
...|..|++.|..++.-..-+..+|..|-. -..|...
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~--C~~C~~~ 97 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLK--CSSCQAQ 97 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSB--CTTTCCB
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccC--cCcCCCc
Confidence 467999999998666666778888887742 2345543
No 244
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.70 E-value=30 Score=19.05 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=7.9
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 11 ~~C~~C~k~f~~ 22 (42)
T 2yte_A 11 YSCAECKETFSD 22 (42)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCCccCC
Confidence 677777766643
No 245
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.51 E-value=52 Score=25.90 Aligned_cols=34 Identities=24% Similarity=0.589 Sum_probs=27.7
Q ss_pred CccCCccccccc---c-ccccccccCceeccccccccc
Q psy7966 92 AIAFCDACHKLL---F-SGHLCRTCGFKFHRACNLAVP 125 (194)
Q Consensus 92 ~ptfCd~C~klL---~-QG~kCk~Cg~~~HkrC~~~Vp 125 (194)
....|..|.+.+ + .|-.|.+|+..+=++|....+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~ 104 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP 104 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccC
Confidence 468899998853 3 899999999999999985544
No 246
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.44 E-value=32 Score=19.49 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=8.7
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2enf_A 13 YKCNECGKVFTQ 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred eECCCCCcccCC
Confidence 678888877654
No 247
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=20.36 E-value=42 Score=26.24 Aligned_cols=27 Identities=26% Similarity=0.647 Sum_probs=20.3
Q ss_pred cCCccccccccccccccccCceeccccc
Q psy7966 94 AFCDACHKLLFSGHLCRTCGFKFHRACN 121 (194)
Q Consensus 94 tfCd~C~klL~QG~kCk~Cg~~~HkrC~ 121 (194)
.+|..|++- -.=+-|+.|...||..|.
T Consensus 5 ~~C~~C~~~-g~ll~Cd~C~~~~H~~C~ 31 (184)
T 3o36_A 5 DWCAVCQNG-GELLCCEKCPKVFHLSCH 31 (184)
T ss_dssp SSCTTTCCC-SSCEECSSSSCEECTTTS
T ss_pred CccccCCCC-CeeeecCCCCcccCcccc
Confidence 468888642 012689999999999995
No 248
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=20.33 E-value=32 Score=19.00 Aligned_cols=12 Identities=42% Similarity=0.930 Sum_probs=8.6
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 11 ~~C~~C~k~f~~ 22 (42)
T 2el5_A 11 YECSECGKAFNR 22 (42)
T ss_dssp EECSSSCCEESS
T ss_pred ccCCCcChhhCC
Confidence 678888777654
No 249
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=20.26 E-value=1.3e+02 Score=20.32 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=19.4
Q ss_pred eEEEEcCCCCeeeEEeec-CCcHHHHHH
Q psy7966 3 LLRAQLPNQQRTSVHIRK-GQTLLEALS 29 (194)
Q Consensus 3 ~irv~LPn~QrT~V~v~~-G~tl~~aL~ 29 (194)
.+.|.|||++ +.++.. |.|+.|.+.
T Consensus 11 ~i~I~lpdG~--~~~~~~~~~T~~dia~ 36 (88)
T 1wwt_A 11 PIKVTLPDGK--QVDAESWKTTPYQIAC 36 (88)
T ss_dssp EEEEECTTSC--EEEEETTTCCHHHHHH
T ss_pred CEEEEECCCC--EEEcccCCCCHHHHHH
Confidence 4789999975 577787 999998543
No 250
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=20.23 E-value=1.5e+02 Score=18.73 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=32.0
Q ss_pred ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEE
Q psy7966 2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY 45 (194)
Q Consensus 2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy 45 (194)
+.|+|-. +++...++|.+..|+.+--.+.-+.-|+.++.-...
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~ 47 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI 47 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE
Confidence 3455555 777778999999999888777777788877764443
No 251
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=20.09 E-value=26 Score=24.99 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=8.5
Q ss_pred CCcccccccc
Q psy7966 95 FCDACHKLLF 104 (194)
Q Consensus 95 fCd~C~klL~ 104 (194)
|||+|..+|.
T Consensus 5 yCdYCd~~lt 14 (77)
T 3cw1_L 5 YCDYCDTYLT 14 (77)
T ss_pred ccccCCceec
Confidence 6999999884
No 252
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.04 E-value=32 Score=19.26 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=9.4
Q ss_pred cccccccCceecc
Q psy7966 106 GHLCRTCGFKFHR 118 (194)
Q Consensus 106 G~kCk~Cg~~~Hk 118 (194)
-|+|..|+..|-.
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2emb_A 12 RYECSKCQATFNL 24 (44)
T ss_dssp SEECTTTCCEESC
T ss_pred CeECCCCCCccCC
Confidence 3788888877754
No 253
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.03 E-value=33 Score=18.92 Aligned_cols=12 Identities=33% Similarity=0.886 Sum_probs=8.4
Q ss_pred ccccccCceecc
Q psy7966 107 HLCRTCGFKFHR 118 (194)
Q Consensus 107 ~kCk~Cg~~~Hk 118 (194)
|+|..|+..|-.
T Consensus 11 ~~C~~C~k~f~~ 22 (41)
T 2ept_A 11 YECQECGKSFRQ 22 (41)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCCcCC
Confidence 677888777654
No 254
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.00 E-value=36 Score=23.37 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=24.9
Q ss_pred CccCCcccccccccc--cccc--ccCceeccccccccc
Q psy7966 92 AIAFCDACHKLLFSG--HLCR--TCGFKFHRACNLAVP 125 (194)
Q Consensus 92 ~ptfCd~C~klL~QG--~kCk--~Cg~~~HkrC~~~Vp 125 (194)
..++| .|+..--.| ..|+ .|..=||-.|+....
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~ 51 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPD 51 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEcccc
Confidence 46788 788874345 4899 999999999986443
Done!