RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7966
(194 letters)
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase;
RAS-binding domain, transferase, riken structural
genomics/proteomics initiative; NMR {Rattus norvegicus}
SCOP: d.15.1.5
Length = 107
Score = 94.4 bits (234), Expect = 1e-25
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDT 57
+R LPN+QRT V++R G +L + L KA+K+R L+PE C + L W+T
Sbjct: 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLQEHKGKKARLDWNT 79
Query: 58 DSDHLPTTEIRVEVQERFPAAINIEHN 84
D+ L E++V+ + A + H+
Sbjct: 80 DAASLIGEELQVDFLKLAAALEHHHHH 106
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 95
Score = 92.8 bits (230), Expect = 4e-25
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQ--WDTDSD 60
++R LPN+QRT V R G T+ ++L KA+ +R L PE C Y G WDTD
Sbjct: 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDIS 78
Query: 61 HLPTTEIRVEVQERFP 76
L E+ VEV E P
Sbjct: 79 WLTGEELHVEVLENVP 94
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics consortium; HET: MSE; 1.99A {Homo sapiens}
Length = 96
Score = 92.0 bits (228), Expect = 9e-25
Identities = 34/84 (40%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQ--WDTDSD 60
++R LPN+QRT V R G T+ ++L KA+ +R L PE C Y G WDTD
Sbjct: 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDIS 74
Query: 61 HLPTTEIRVEVQERFPAAINIEHN 84
L E+ VEV E P HN
Sbjct: 75 WLTGEELHVEVLENVPL---TTHN 95
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding
proteins, protein-protein complex, effectors, signaling
protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5
PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Length = 77
Score = 86.6 bits (214), Expect = 5e-23
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDT 57
+R LPN+QRT V++R G +L + L KA+K+R L+PE C + L W+T
Sbjct: 3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNT 62
Query: 58 DSDHLPTTEIRVEV 71
D+ L E++V+
Sbjct: 63 DAASLIGEELQVDF 76
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding
domain (RBD), ubiquitin-like fold, A-RAF kinase,
structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Length = 86
Score = 87.0 bits (215), Expect = 5e-23
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY--DSNTGVSLQWDTD 58
G ++ LPN+QRT V +R G ++ ++L KA+K+R L + C Y WDT
Sbjct: 7 GGTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTA 66
Query: 59 SDHLPTTEIRVEV 71
L E+ VEV
Sbjct: 67 IAPLDGEELIVEV 79
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto-
oncogene, zinc, ATP-binding, phorbol-ester binding; NMR
{Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Length = 52
Score = 57.0 bits (138), Expect = 6e-12
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 81 IEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLC 128
HN R+TF +AFCD C K L +G C+TCG+KFH C+ VP +C
Sbjct: 2 TTHNFARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHCSTKVPTMC 49
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding
protein, signaling protein; NMR {Mus musculus} SCOP:
g.49.1.1 PDB: 1kbf_A
Length = 49
Score = 47.6 bits (113), Expect = 2e-08
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 81 IEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVP 125
+ H + + C+ C K + G C+ C K H C P
Sbjct: 3 VTHRFST-KSWLSQVCNVCQKSMIFGVKCKHCRLKCHNKCTKEAP 46
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain,
zinc-binding domain, endocytosis/exocytosis,signaling
protein complex; NMR {Rattus norvegicus}
Length = 66
Score = 47.9 bits (114), Expect = 3e-08
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 78 AINIEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQV 130
I+HN T +C C LL+ G C CG K H C + C++
Sbjct: 9 GGGIQHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADCKL 65
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 85
Score = 48.3 bits (115), Expect = 3e-08
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 80 NIEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQVERIQ 134
+H T+ + FCD C LL+ G C TC H+ C + VP LC ++ +
Sbjct: 15 RSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHTE 73
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 65
Score = 45.2 bits (107), Expect = 3e-07
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 79 INIEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQV 130
I++ H + + FC+ C LL+ G C CG H C V LC +
Sbjct: 9 IDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCGI 64
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus
musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Length = 50
Score = 44.0 bits (104), Expect = 5e-07
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 83 HNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLC 128
H + + FCD C LL+ G C CG H C V LC
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich
domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 42.6 bits (100), Expect = 3e-06
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 76 PAAINIEHNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVP 125
+ H F FCD C +++ G C+ C H C V
Sbjct: 11 KLVNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVE 64
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 84
Score = 42.4 bits (99), Expect = 4e-06
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 6/73 (8%)
Query: 63 PTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLF------SGHLCRTCGFKF 116
V E+ + H + C+AC K L+ CR C K
Sbjct: 5 EPEFPVEPVGEKSNYICHKGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKC 64
Query: 117 HRACNLAVPYLCQ 129
H+ +
Sbjct: 65 HKDHMDKKEEIIA 77
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis,
cysteine rich domain; NMR {Mus musculus}
Length = 72
Score = 41.8 bits (98), Expect = 5e-06
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 74 RFPAAINIEHNITRRTFFAI-AFCDACHKLLF-SGHLCRTCGFKFHRACNLAVPYLCQ 129
R A H +CD C + + C C F H C + C+
Sbjct: 15 RVLAERGEGHRFVELALRGGPGWCDLCGREVLRQALRCANCKFTCHSECRSLIQLDCR 72
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal
transduction, apoptosis, cysteine rich domain, metal
binding protein; NMR {Mus musculus}
Length = 59
Score = 41.4 bits (97), Expect = 6e-06
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 74 RFPAAINIEHNITRRTFFAI-AFCDACHKLLF-SGHLCRTCGFKFHRACNLAVPYLCQ 129
R A H +CD C + + C C F H C + C+
Sbjct: 2 RVLAERGEGHRFVELALRGGPGWCDLCGREVLRQALRCANCKFTCHSECRSLIQLDCR 59
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 42.7 bits (100), Expect = 3e-05
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 4/105 (3%)
Query: 79 INIEHNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLCQVERIQ 134
+H T+ + FCD C LL+ G C TC H+ C + VP LC + +
Sbjct: 99 PRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTE 158
Query: 135 QTYYQMLLASNAETSAGILQMPSDYRPGSNTRKHPKTLANLVCYP 179
+ + A ++ + + L P
Sbjct: 159 RRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIP 203
Score = 37.3 bits (86), Expect = 0.002
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 83 HNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLC 128
H T R F FC C ++ G C+ C F H+ C+ V + C
Sbjct: 38 HKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSC 87
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 39.5 bits (92), Expect = 4e-05
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 87 RRTFF-AIAFCDACHKLLFSGHLCRTCGFKFHRAC 120
R T+ A+ C+ CH LL G C TCG + H C
Sbjct: 8 RETYPDAVKICNICHSLLIQGQSCETCGIRMHLPC 42
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 77
Score = 39.0 bits (91), Expect = 7e-05
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 83 HNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLC 128
H T F FC CH+ ++ G+ CR C H+ C V C
Sbjct: 24 HEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKC 73
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 39.0 bits (91), Expect = 8e-05
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 83 HNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLC 128
H F FC C ++ G+ CR C H+ C + C
Sbjct: 18 HEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRC 67
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 40.5 bits (94), Expect = 1e-04
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 77 AAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRAC 120
A + +E I A+ C+ CH LL G C TCG + H C
Sbjct: 164 AILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPC 207
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 38.7 bits (90), Expect = 7e-04
Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 5/102 (4%)
Query: 33 KLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVQERFPAA-INIEHNITRRTFF 91
+ + Q L + R ++E HN TF
Sbjct: 159 PAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFR 218
Query: 92 AIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQ 129
+C+ C ++ G C CG H+ C+ VP C+
Sbjct: 219 GPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCK 260
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 38.3 bits (89), Expect = 8e-04
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 82 EHNITRRTFFAIAFCDACHKLL----FSGHLCRTCGFKFHRAC 120
H+ +F C AC LL + G+ C C H+ C
Sbjct: 346 GHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKEC 388
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.008
Identities = 32/207 (15%), Positives = 59/207 (28%), Gaps = 78/207 (37%)
Query: 1 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDT--- 57
I L ++ + ++H +++++ + +DS+ + D
Sbjct: 430 SIYLELKVKLENEYALH----RSIVDHYNIPKT-----------FDSDDLIPPYLDQYFY 474
Query: 58 --DSDHLPTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCG-- 113
HL E E F R F F + K+ G
Sbjct: 475 SHIGHHLKNIE-HPERMTLF-----------RMVFLDFRFLEQ--KIRHDSTAWNASGSI 520
Query: 114 ------FKFHRACNLAVPYLCQVERIQQTYYQMLLASNAETSAGILQMPSDYRPGSNTRK 167
KF++ PY+C Y+ L+ + IL D+ P
Sbjct: 521 LNTLQQLKFYK------PYICD----NDPKYERLVNA-------IL----DFLPKIEE-- 557
Query: 168 HPKTLANLVCYPGIVQRRDCNNLVKIG 194
NL+C +L++I
Sbjct: 558 ------NLICSK-------YTDLLRIA 571
Score = 31.7 bits (71), Expect = 0.17
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 16/98 (16%)
Query: 11 QQRTSVHIRKGQT---LLEALSKA--MKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTT 65
+ H T + L K + ++L E+ T + +S+ ++ D L T
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--NPRRLSIIAESIRDGLATW 344
Query: 66 E-IRVEVQERFPAAI-----NIEHNITRRTF--FAIAF 95
+ + ++ I +E R+ F ++ F
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-F 381
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 31.9 bits (72), Expect = 0.12
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 64 TTEIRVEVQERFPAAINI-EHNITRRTFFAIAFCDACHKLL----FSGHLCRTCGFKFHR 118
+ + + +P H+ +F C AC LL + G+ C C H+
Sbjct: 499 MEQFEMAISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHK 558
Query: 119 ACNLAVP 125
C VP
Sbjct: 559 ECLGRVP 565
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding
domain, PDI-like protein, structural genomics; NMR
{Arabidopsis thaliana} SCOP: g.49.1.3
Length = 89
Score = 29.1 bits (65), Expect = 0.29
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 96 CDACHKLLFS-GHLCRTCGFKFHRACNLAVP 125
CD C + + C C F H C L
Sbjct: 50 CDKCEEEGTIWSYHCDECDFDLHAKCALNED 80
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding
domain, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
g.49.1.1
Length = 84
Score = 28.8 bits (64), Expect = 0.33
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 5/40 (12%)
Query: 94 AFCDACHKLLFSGHL-----CRTCGFKFHRACNLAVPYLC 128
A C C K S C C H +C ++ C
Sbjct: 39 AKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKC 78
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 30.0 bits (67), Expect = 0.50
Identities = 9/28 (32%), Positives = 9/28 (32%), Gaps = 3/28 (10%)
Query: 96 CDACHK---LLFSGHLCRTCGFKFHRAC 120
C C L H C CG R C
Sbjct: 378 CMNCGCDFSLTLRRHHCHACGKIVCRNC 405
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 28.4 bits (62), Expect = 0.93
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 4/35 (11%)
Query: 96 CDACHKLLF----SGHLCRTCGFKFHRACNLAVPY 126
C C + L + +C C C +
Sbjct: 58 CILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN 92
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis
multifunctional enzyme, cell WALL, peptidoglycan, gamma
lactam antibiotics; HET: PL7; 2.4A {Streptococcus
pneumoniae} PDB: 2jci_A* 2je5_A*
Length = 720
Score = 27.8 bits (62), Expect = 2.4
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 150 AGILQMPSDYRPGSNTRKHPKTLANLVCYPGIVQRRD 186
AG+ Q P Y P ++ L + ++R
Sbjct: 193 AGLPQSPITYSP----YENTGELKSDEDLEIGLRRAK 225
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger
domain, metal binding protein; NMR {Rattus norvegicus}
PDB: 2cjs_C
Length = 62
Score = 25.1 bits (54), Expect = 5.1
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 94 AFCDACHKLLF---SGHLCRTCGFKFHRACNLAVP-------YLCQVERIQQ 135
C CHK F GH C C KF C V ++C + R QQ
Sbjct: 10 PTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQQ 61
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative
splicing, cell membrane, coiled coil, cytoplasm,
cytoskeleton, endocytosis; NMR {Homo sapiens}
Length = 98
Score = 25.7 bits (56), Expect = 5.5
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 8 LPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSN 48
LP +Q+ ++ + L K + R +M Y+
Sbjct: 11 LPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKT 51
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 25.7 bits (55), Expect = 8.2
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 64 TTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHK----LLFSGHLCRTCGFKFHRA 119
E ++ + + ++ C C + LL S C C ++
Sbjct: 39 EEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLFVCKS 98
Query: 120 CNLAVP----YLCQV 130
C+ A P +LC
Sbjct: 99 CSHAHPEEQGWLCDP 113
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural
genomics, PSI-2, protein structure initiative; NMR
{Salmonella typhimurium LT2}
Length = 81
Score = 24.9 bits (54), Expect = 8.4
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 94 AFCDACHKLLFSGHLCRTCGFKFH--RACNLAVPYLCQ 129
A C+ C K LC C +AC AV Y CQ
Sbjct: 19 AHCETCAKDFSLQALCPDCRQPLQVLKACG-AVDYFCQ 55
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 25.6 bits (55), Expect = 9.1
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 7/29 (24%)
Query: 95 FCDACHK---LLFSGHLCRTCGFKFHRAC 120
C C K L+ +C C F FH C
Sbjct: 4 ICRVCQKPGDLV----MCNQCEFCFHLDC 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.135 0.418
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,842,407
Number of extensions: 152900
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 533
Number of HSP's successfully gapped: 60
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)