RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7966
(194 letters)
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene
serine/threonine-protein kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 73
Score = 72.0 bits (177), Expect = 7e-18
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY--DSNTGVSLQWDTDSD 60
++ LPN+QRT V +R G ++ ++L KA+K+R L + C Y WDT
Sbjct: 2 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIA 61
Query: 61 HLPTTEIRVEV 71
L E+ VEV
Sbjct: 62 PLDGEELIVEV 72
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId:
9606]}
Length = 77
Score = 72.1 bits (177), Expect = 9e-18
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDT 57
+R LPN+QRT V++R G +L + L KA+K+R L+PE C + L W+T
Sbjct: 3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNT 62
Query: 58 DSDHLPTTEIRVEV 71
D+ L E++V+
Sbjct: 63 DAASLIGEELQVDF 76
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 47.3 bits (112), Expect = 1e-08
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 83 HNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLC 128
HN R+TF +AFCD C K L +G C+TCG+KFH C+ VP +C
Sbjct: 4 HNFARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHCSTKVPTMC 49
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 45.1 bits (106), Expect = 1e-07
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 79 INIEHNITRRTFFAIAFCDACHKLLFS-----GHLCRTCGFKFHRACNLAVPYLC 128
I + H A C C K S C C H +C ++ C
Sbjct: 24 IAMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKC 78
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 49
Score = 42.9 bits (101), Expect = 5e-07
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 81 IEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVP 125
+ H + +++ C+ C K + G C+ C K H C P
Sbjct: 3 VTHRFSTKSWL-SQVCNVCQKSMIFGVKCKHCRLKCHNKCTKEAP 46
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 42.0 bits (98), Expect = 1e-06
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 83 HNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLC 128
H + + FCD C LL+ G C CG H C V LC
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 41.9 bits (98), Expect = 2e-06
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 83 HNITRRTFFAIAFCDACHKLLFS----GHLCRTCGFKFHRACNLAVPYLCQVE 131
HN TF +C+ C ++ G C CG H+ C+ VP CQ +
Sbjct: 5 HNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPD 57
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus)
[TaxId: 10117]}
Length = 66
Score = 41.2 bits (96), Expect = 3e-06
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 81 IEHNITRRTFFAIAFCDACHKLLF----SGHLCRTCGFKFHRACNLAVPYLCQVERIQQ 135
+H ++ + FCD C LL+ G C C HR C +VP LC V+ ++
Sbjct: 7 NKHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPSLCGVDHTER 65
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 28.7 bits (64), Expect = 0.14
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 96 CDACHKLLFS-GHLCRTCGFKFHRAC 120
CD C + + C C F H C
Sbjct: 50 CDKCEEEGTIWSYHCDECDFDLHAKC 75
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 27.4 bits (60), Expect = 0.60
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 4/29 (13%)
Query: 96 CDACHK----LLFSGHLCRTCGFKFHRAC 120
C C + L + +C C C
Sbjct: 51 CILCGEQLGMLGSASVVCEDCKKNVCTKC 79
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 23.8 bits (52), Expect = 2.6
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 10/34 (29%)
Query: 107 HLCRTCGFKFHRACNLAV----------PYLCQV 130
++C++CG F R +L P+ CQV
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 128
Score = 25.6 bits (56), Expect = 2.6
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 6 AQLPNQQRTSVHIRKGQTLLEALSKA 31
L ++ S+ + +G+ +LEA
Sbjct: 30 MDLDDEDYGSLEVNEGEYILEAAEAQ 55
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional
dehydrogenase/ferrochelatase Met8p, dimerisation and
C-terminal domains {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 123
Score = 25.6 bits (56), Expect = 2.9
Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 17 HIRKGQTLLEALS---KAMKL-RNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVQ 72
++ G L +S + + ++ E+ + ++L+ E+R ++
Sbjct: 3 NLEIGDRLQILISTNGLSPRFGALVRDEIRNLFTQMGDLALEDAVVKLG----ELRRGIR 58
Query: 73 ERFPAAINIEHNITRRTFFAIAFCDA 98
P + ++ R +A D
Sbjct: 59 LLAPD----DKDVKYRMDWARRCTDL 80
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 58
Score = 23.8 bits (52), Expect = 4.8
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 92 AIAFCDACHKLLFSGHLCRTCGF 114
+ C CH S H+C CG+
Sbjct: 28 NLTECPQCHGKKLSHHICPNCGY 50
>d1c8ua1 d.38.1.3 (A:2-115) Thioesterase II (TesB) {Escherichia coli
[TaxId: 562]}
Length = 114
Score = 24.0 bits (52), Expect = 8.3
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 86 TRRTF----FAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLCQVERIQQTY 137
R+ F A A + + + F R + P + VE ++
Sbjct: 30 LRQVFGGQVVGQALYAAKETVPEERLVHSFHSY-FLRPGDSKKPIIYDVETLRDGN 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.135 0.418
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 696,241
Number of extensions: 30008
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 34
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.1 bits)