BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7967
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 108/146 (73%), Gaps = 11/146 (7%)
Query: 58 GAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVTE 117
G+MA+L+KDA++PNL+QTLE TP +H GPFANIAHGC+S++A ALKL YVVTE
Sbjct: 245 GSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLA---DYVVTE 301
Query: 118 AGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENL 177
AGFG+D+G EKF+++KCR +G PDA V+V TVRALKMHGG P K + ENL
Sbjct: 302 AGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP--------KSDLATENL 353
Query: 178 DLVQKGCVNLEKHVSNGLKFGVPVVV 203
+ +++G NLEKH+ N KFGVP VV
Sbjct: 354 EALREGFANLEKHIENIGKFGVPAVV 379
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 50/88 (56%), Gaps = 13/88 (14%)
Query: 241 LNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALALSKNLE 287
LNI+P TI+WRRV G + R TGFDISVASEVMA L L+ +L
Sbjct: 157 LNIDPRTITWRRVIDLNERALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLM 216
Query: 288 DLYNRLSRMMVAEDKEGRPVTLDDLAAK 315
DL R SR +V +G+PVT DL A+
Sbjct: 217 DLKERFSRKVVGYTYDGKPVTAGDLEAQ 244
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIK 45
ITPTP GEGK+TT++GL AL A K C+R+PS GP+FGIK
Sbjct: 65 ITPTPAGEGKTTTSVGLTDAL-ARLGKRVMVCLREPSLGPSFGIK 108
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 108/146 (73%), Gaps = 11/146 (7%)
Query: 58 GAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVTE 117
G+MA+L+KDA++PNL+QTLE TP +H GPFANIAHGC+S++A ALKL YVVTE
Sbjct: 245 GSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLA---DYVVTE 301
Query: 118 AGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENL 177
AGFG+D+G EKF+++KCR +G PDA V+V TVRALKMHGG P K + ENL
Sbjct: 302 AGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP--------KSDLATENL 353
Query: 178 DLVQKGCVNLEKHVSNGLKFGVPVVV 203
+ +++G NLEKH+ N KFGVP VV
Sbjct: 354 EALREGFANLEKHIENIGKFGVPAVV 379
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 13/88 (14%)
Query: 241 LNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALALSKNLE 287
LNI+P TI+WRRV G + R TGFDISVASEVMA L L+ +L
Sbjct: 157 LNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLM 216
Query: 288 DLYNRLSRMMVAEDKEGRPVTLDDLAAK 315
DL R SR++V +G+PVT DL A+
Sbjct: 217 DLKERFSRIVVGYTYDGKPVTAGDLEAQ 244
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIK 45
ITPTP GEGK+TT++GL AL A K C+R+PS GP+FGIK
Sbjct: 65 ITPTPAGEGKTTTSVGLTDAL-ARLGKRVMVCLREPSLGPSFGIK 108
>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
pdb|3DO6|B Chain B, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
Length = 543
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 99/153 (64%), Gaps = 11/153 (7%)
Query: 55 GLTGAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYV 114
G+ GA AVLLKDA+ PNL+QT EGTP ++H GPFANIAHG +S++A A KL Y
Sbjct: 228 GIQGAXAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGTNSIIATKXAXKL---SEYT 284
Query: 115 VTEAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTE 174
VTEAGFG+D+G EKF + R G P+A VLV TVRALK HGG LK E
Sbjct: 285 VTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGA-------NLK-NIHE 336
Query: 175 ENLDLVQKGCVNLEKHVSNGLKFGVPVVVKGKR 207
ENL+ +++G NL HV N KF +PVVV R
Sbjct: 337 ENLEALKEGFKNLRVHVENLRKFNLPVVVALNR 369
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 241 LNINPDTISWRR-------------VGQSPTEKNMERSTGFDISVASEVMAALALSKNLE 287
L I+ + W+R +G + R F I+ ASEV A LALS+N +
Sbjct: 143 LKIDITRVFWKRTXDXNDRALRSIVIGLGGSANGFPREDSFIITAASEVXAILALSENXK 202
Query: 288 DLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGA 319
DL RL +++VA D + + V + DL + A A
Sbjct: 203 DLKERLGKIIVALDADRKIVRISDLGIQGAXA 234
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTF 42
+TPTP GEGK+TT+IGL+ +L K + +R+PS GPT
Sbjct: 51 VTPTPAGEGKTTTSIGLSXSL-NRIGKKSIVTLREPSLGPTL 91
>pdb|2EO2|A Chain A, Solution Structure Of The Insertion Region (510-573) Of
Fthfs Domain From Mouse Methylenetetrahydrofolate
Dehydrogenase (Nadp+ Dependent) 1-Like Protein
Length = 71
Score = 58.5 bits (140), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 202 VVKGKREFSIIQXXXXXXXDINRTDPNTLTPEEITKFVRLNINPDTISWR 251
+V G REFS IQ I++TDP+TLT EE+ KF RLNI+P TI+W+
Sbjct: 22 LVNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQ 71
>pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|B Chain B, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|C Chain C, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
Length = 481
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 135 RTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSN- 193
R G PD + + R + + GGP +V + P E++ GC+ E +N
Sbjct: 103 RGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESI-----GCILREAQKNNE 157
Query: 194 GLKFGV 199
LKF V
Sbjct: 158 NLKFQV 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,595,047
Number of Sequences: 62578
Number of extensions: 371117
Number of successful extensions: 916
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 17
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)