Query psy7967
Match_columns 353
No_of_seqs 307 out of 1615
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 23:26:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02759 Formate--tetrahydrofo 100.0 7E-102 1E-106 789.3 20.5 262 1-353 77-514 (637)
2 PRK13507 formate--tetrahydrofo 100.0 3E-101 7E-106 780.0 20.8 253 1-349 71-460 (587)
3 PF01268 FTHFS: Formate--tetra 100.0 2E-101 3E-106 781.7 12.0 249 1-353 62-435 (557)
4 PTZ00386 formyl tetrahydrofola 100.0 1E-99 2E-104 772.1 20.3 254 1-353 76-502 (625)
5 COG2759 MIS1 Formyltetrahydrof 100.0 1.1E-98 2E-103 748.2 17.3 249 1-353 60-432 (554)
6 PRK13506 formate--tetrahydrofo 100.0 4.5E-95 1E-99 735.4 19.4 257 1-353 62-456 (578)
7 cd00477 FTHFS Formyltetrahydro 100.0 8.7E-94 1.9E-98 720.5 20.2 245 1-349 46-415 (524)
8 KOG4230|consensus 100.0 5.5E-94 1.2E-98 730.0 18.0 258 1-350 373-811 (935)
9 PRK13505 formate--tetrahydrofo 100.0 6.4E-91 1.4E-95 704.7 20.0 249 1-353 63-435 (557)
10 PLN02759 Formate--tetrahydrofo 100.0 2E-53 4.4E-58 434.4 6.0 182 55-327 124-319 (637)
11 PTZ00386 formyl tetrahydrofola 100.0 1.4E-52 3.1E-57 427.6 5.6 178 55-327 123-314 (625)
12 KOG4230|consensus 100.0 9.1E-49 2E-53 399.9 6.7 178 56-325 420-611 (935)
13 PRK13507 formate--tetrahydrofo 100.0 1.6E-39 3.6E-44 330.7 2.6 88 238-327 173-273 (587)
14 cd00477 FTHFS Formyltetrahydro 100.0 4.2E-39 9.2E-44 325.2 2.6 94 232-327 129-235 (524)
15 PRK13506 formate--tetrahydrofo 100.0 1.7E-38 3.7E-43 323.3 5.0 92 234-327 161-265 (578)
16 PRK13505 formate--tetrahydrofo 100.0 1.6E-38 3.4E-43 323.3 1.9 94 232-327 146-252 (557)
17 COG2759 MIS1 Formyltetrahydrof 100.0 4.6E-38 9.9E-43 314.7 2.2 93 232-326 143-248 (554)
18 PF01268 FTHFS: Formate--tetra 100.0 1.5E-38 3.2E-43 323.4 -2.4 94 232-327 145-251 (557)
19 COG0489 Mrp ATPases involved i 95.6 0.024 5.2E-07 53.8 5.7 130 2-151 63-200 (265)
20 TIGR00347 bioD dethiobiotin sy 95.5 0.0098 2.1E-07 50.6 2.6 35 1-38 2-36 (166)
21 TIGR01969 minD_arch cell divis 95.2 0.096 2.1E-06 46.6 8.1 42 5-47 9-53 (251)
22 TIGR03029 EpsG chain length de 95.2 0.011 2.4E-07 54.5 2.2 44 3-47 110-156 (274)
23 TIGR03018 pepcterm_TyrKin exop 94.9 0.017 3.7E-07 51.6 2.4 43 4-46 43-88 (207)
24 cd02037 MRP-like MRP (Multiple 94.0 0.063 1.4E-06 46.0 3.9 36 4-41 7-42 (169)
25 PRK11519 tyrosine kinase; Prov 93.6 0.19 4.2E-06 53.7 7.3 45 2-47 532-579 (719)
26 cd02036 MinD Bacterial cell di 93.6 0.069 1.5E-06 44.9 3.2 40 4-44 7-49 (179)
27 CHL00175 minD septum-site dete 93.2 0.078 1.7E-06 49.1 3.2 42 5-47 24-68 (281)
28 TIGR01007 eps_fam capsular exo 92.8 0.057 1.2E-06 47.6 1.7 42 4-46 25-69 (204)
29 PF01656 CbiA: CobQ/CobB/MinD/ 92.8 0.087 1.9E-06 44.7 2.7 32 4-36 6-37 (195)
30 cd02033 BchX Chlorophyllide re 92.8 0.1 2.2E-06 51.5 3.6 42 5-47 39-83 (329)
31 PF02367 UPF0079: Uncharacteri 92.7 0.064 1.4E-06 46.4 1.8 30 5-44 23-52 (123)
32 PRK10037 cell division protein 92.6 0.083 1.8E-06 48.4 2.5 42 5-47 10-53 (250)
33 cd02040 NifH NifH gene encodes 92.3 0.11 2.3E-06 47.2 2.7 27 5-32 9-35 (270)
34 PRK13185 chlL protochlorophyll 92.2 0.1 2.2E-06 47.9 2.6 32 5-37 10-41 (270)
35 PRK13230 nitrogenase reductase 92.1 0.11 2.4E-06 48.2 2.7 30 6-36 10-39 (279)
36 TIGR01968 minD_bact septum sit 92.0 0.14 3E-06 45.7 3.2 42 4-46 9-53 (261)
37 TIGR01281 DPOR_bchL light-inde 92.0 0.11 2.4E-06 47.6 2.5 38 6-44 9-46 (268)
38 PRK13235 nifH nitrogenase redu 91.8 0.12 2.5E-06 48.0 2.5 39 5-44 9-47 (274)
39 TIGR03371 cellulose_yhjQ cellu 91.1 0.16 3.4E-06 45.4 2.5 26 5-31 10-35 (246)
40 TIGR01287 nifH nitrogenase iro 91.0 0.16 3.5E-06 46.9 2.6 25 6-31 9-33 (275)
41 cd02117 NifH_like This family 91.0 0.28 6E-06 43.8 3.9 37 5-42 8-44 (212)
42 PRK13233 nifH nitrogenase redu 90.7 0.19 4E-06 46.4 2.7 27 5-31 10-36 (275)
43 cd02032 Bchl_like This family 90.7 0.29 6.3E-06 45.0 3.9 38 6-44 9-46 (267)
44 cd00550 ArsA_ATPase Oxyanion-t 90.6 0.14 3E-06 47.8 1.7 41 5-46 8-50 (254)
45 TIGR02016 BchX chlorophyllide 90.5 0.2 4.4E-06 48.0 2.8 34 5-39 8-41 (296)
46 PRK11670 antiporter inner memb 90.5 0.25 5.4E-06 49.1 3.5 40 5-45 116-158 (369)
47 PF09140 MipZ: ATPase MipZ; I 90.4 0.12 2.5E-06 50.5 1.1 39 6-45 10-51 (261)
48 cd01983 Fer4_NifH The Fer4_Nif 90.4 0.28 6.1E-06 36.1 2.9 26 7-34 9-34 (99)
49 PHA02518 ParA-like protein; Pr 90.2 0.23 4.9E-06 43.1 2.6 25 6-31 10-34 (211)
50 cd03110 Fer4_NifH_child This p 90.2 0.21 4.6E-06 42.9 2.4 38 4-46 7-47 (179)
51 PRK00090 bioD dithiobiotin syn 90.2 0.21 4.5E-06 44.6 2.4 29 1-30 4-32 (222)
52 PRK13232 nifH nitrogenase redu 90.0 0.22 4.8E-06 46.1 2.5 27 5-32 9-35 (273)
53 PRK10646 ADP-binding protein; 89.9 0.18 3.9E-06 45.2 1.8 18 5-22 36-53 (153)
54 cd01672 TMPK Thymidine monopho 89.4 0.47 1E-05 40.2 3.9 34 5-40 8-41 (200)
55 TIGR01005 eps_transp_fam exopo 89.1 0.24 5.2E-06 52.6 2.3 42 4-46 554-598 (754)
56 PF02223 Thymidylate_kin: Thym 89.1 0.3 6.4E-06 42.3 2.5 34 6-41 5-38 (186)
57 PRK13234 nifH nitrogenase redu 89.0 0.39 8.5E-06 45.7 3.5 39 5-44 12-53 (295)
58 COG0802 Predicted ATPase or ki 88.8 0.24 5.2E-06 44.6 1.8 18 5-22 33-50 (149)
59 PF13500 AAA_26: AAA domain; P 88.7 0.24 5.3E-06 43.6 1.7 32 1-34 5-36 (199)
60 PRK13976 thymidylate kinase; P 88.6 0.39 8.5E-06 44.1 3.0 33 5-37 8-40 (209)
61 PHA02519 plasmid partition pro 88.4 0.44 9.6E-06 47.7 3.5 40 5-45 115-157 (387)
62 PRK13231 nitrogenase reductase 88.2 0.21 4.5E-06 45.9 1.0 26 5-33 10-35 (264)
63 PRK13869 plasmid-partitioning 88.1 0.36 7.8E-06 48.5 2.7 39 5-44 130-170 (405)
64 PRK13705 plasmid-partitioning 88.1 0.4 8.8E-06 47.9 3.0 40 5-45 115-157 (388)
65 CHL00072 chlL photochlorophyll 88.0 0.38 8.2E-06 46.0 2.7 30 6-36 9-38 (290)
66 PF02374 ArsA_ATPase: Anion-tr 87.7 0.22 4.8E-06 48.2 0.9 41 6-47 10-52 (305)
67 TIGR03453 partition_RepA plasm 87.5 0.41 8.9E-06 47.1 2.6 41 5-46 113-155 (387)
68 PRK09841 cryptic autophosphory 87.5 0.31 6.8E-06 52.2 1.9 42 4-46 539-583 (726)
69 COG1192 Soj ATPases involved i 87.4 0.44 9.4E-06 43.4 2.6 42 6-47 12-55 (259)
70 PRK10818 cell division inhibit 87.4 0.44 9.5E-06 43.7 2.6 42 5-47 11-55 (270)
71 TIGR00150 HI0065_YjeE ATPase, 86.5 0.39 8.4E-06 42.0 1.7 18 5-22 30-47 (133)
72 PRK00698 tmk thymidylate kinas 86.4 0.7 1.5E-05 40.0 3.2 35 5-42 11-45 (205)
73 PF06564 YhjQ: YhjQ protein; 85.8 0.6 1.3E-05 44.7 2.7 40 5-45 10-51 (243)
74 PRK13849 putative crown gall t 85.7 0.63 1.4E-05 43.3 2.7 34 5-40 10-43 (231)
75 cd02042 ParA ParA and ParB of 85.5 0.74 1.6E-05 36.1 2.6 26 6-32 9-34 (104)
76 PTZ00301 uridine kinase; Provi 85.3 0.86 1.9E-05 42.1 3.4 25 5-29 11-35 (210)
77 PRK13236 nitrogenase reductase 85.3 0.66 1.4E-05 44.3 2.7 31 6-37 15-45 (296)
78 PRK13768 GTPase; Provisional 84.7 1 2.3E-05 42.1 3.7 34 5-39 10-43 (253)
79 PRK13973 thymidylate kinase; P 84.2 1.1 2.4E-05 40.5 3.5 34 5-40 11-44 (213)
80 PRK12374 putative dithiobiotin 83.8 0.66 1.4E-05 42.5 1.9 37 1-39 7-43 (231)
81 cd03111 CpaE_like This protein 83.8 0.95 2.1E-05 36.8 2.6 29 4-32 7-35 (106)
82 PLN02924 thymidylate kinase 83.7 0.94 2E-05 42.0 2.9 36 5-42 24-59 (220)
83 TIGR03815 CpaE_hom_Actino heli 83.6 1.1 2.3E-05 42.8 3.3 41 5-46 102-145 (322)
84 PRK13896 cobyrinic acid a,c-di 83.5 0.88 1.9E-05 46.8 2.8 37 1-42 6-42 (433)
85 PF03029 ATP_bind_1: Conserved 83.3 0.9 1.9E-05 42.6 2.6 25 5-30 4-28 (238)
86 cd03115 SRP The signal recogni 83.0 1.2 2.7E-05 38.1 3.2 28 5-33 8-35 (173)
87 cd02035 ArsA ArsA ATPase funct 82.4 1.1 2.3E-05 40.6 2.7 31 4-35 6-39 (217)
88 COG1703 ArgK Putative periplas 82.2 5.7 0.00012 40.1 7.8 33 6-39 60-92 (323)
89 COG1797 CobB Cobyrinic acid a, 82.2 0.91 2E-05 47.4 2.4 25 3-28 7-31 (451)
90 COG0125 Tmk Thymidylate kinase 82.2 1.3 2.9E-05 41.2 3.3 35 5-41 11-45 (208)
91 cd00046 DEXDc DEAD-like helica 81.1 2 4.4E-05 32.7 3.4 19 5-23 8-26 (144)
92 cd02038 FleN-like FleN is a me 80.9 2 4.3E-05 36.3 3.6 31 5-36 8-38 (139)
93 COG2894 MinD Septum formation 80.8 1.2 2.6E-05 43.6 2.6 26 5-31 11-36 (272)
94 PRK07933 thymidylate kinase; V 79.7 2.3 5E-05 38.9 3.9 33 5-39 8-40 (213)
95 TIGR00041 DTMP_kinase thymidyl 79.1 2.5 5.5E-05 36.6 3.8 33 5-39 11-43 (195)
96 TIGR00379 cobB cobyrinic acid 78.4 1.3 2.9E-05 45.0 2.1 31 1-32 4-34 (449)
97 TIGR00064 ftsY signal recognit 78.1 1.9 4.1E-05 41.2 3.0 25 5-30 80-104 (272)
98 smart00382 AAA ATPases associa 77.8 1.1 2.3E-05 34.1 0.9 19 5-23 10-28 (148)
99 PRK00300 gmk guanylate kinase; 77.4 1.6 3.4E-05 38.2 2.0 38 5-43 13-50 (205)
100 PF07015 VirC1: VirC1 protein; 75.9 2.1 4.6E-05 41.1 2.6 27 4-31 9-35 (231)
101 COG0003 ArsA Predicted ATPase 75.4 2.4 5.2E-05 42.1 2.9 42 6-48 11-54 (322)
102 PF13207 AAA_17: AAA domain; P 75.2 1.9 4E-05 34.3 1.7 17 5-21 7-23 (121)
103 TIGR03499 FlhF flagellar biosy 75.1 3 6.5E-05 39.8 3.4 29 5-33 202-230 (282)
104 TIGR00959 ffh signal recogniti 74.8 2.6 5.7E-05 43.3 3.1 26 5-30 107-132 (428)
105 cd03109 DTBS Dethiobiotin synt 74.7 2.4 5.3E-05 35.9 2.4 30 3-34 5-34 (134)
106 COG0283 Cmk Cytidylate kinase 74.1 1.7 3.7E-05 41.7 1.5 19 5-23 12-30 (222)
107 cd01131 PilT Pilus retraction 73.8 3.4 7.3E-05 37.1 3.2 32 5-37 9-40 (198)
108 PF13086 AAA_11: AAA domain; P 73.6 3.1 6.7E-05 35.6 2.8 17 5-21 25-41 (236)
109 PRK04296 thymidine kinase; Pro 73.1 3.9 8.5E-05 36.5 3.5 36 5-43 10-45 (190)
110 PRK00131 aroK shikimate kinase 72.4 2.2 4.7E-05 35.6 1.5 18 5-22 12-29 (175)
111 PRK06278 cobyrinic acid a,c-di 72.1 2.8 6.2E-05 43.7 2.6 23 1-23 243-265 (476)
112 PF00485 PRK: Phosphoribulokin 71.8 2.4 5.1E-05 37.5 1.7 23 5-28 7-29 (194)
113 TIGR00750 lao LAO/AO transport 71.6 15 0.00032 35.2 7.2 97 5-122 42-139 (300)
114 PRK00784 cobyric acid synthase 71.5 2.5 5.4E-05 43.4 2.0 29 1-30 7-35 (488)
115 PRK01077 cobyrinic acid a,c-di 71.4 2.3 5E-05 43.2 1.8 28 2-30 9-36 (451)
116 PF13604 AAA_30: AAA domain; P 71.1 4 8.6E-05 36.7 3.0 27 5-32 26-52 (196)
117 PRK10867 signal recognition pa 70.8 3.9 8.3E-05 42.2 3.2 27 5-31 108-134 (433)
118 COG2805 PilT Tfp pilus assembl 70.4 3.9 8.5E-05 41.6 3.1 31 5-36 133-163 (353)
119 PRK05632 phosphate acetyltrans 69.5 2.8 6E-05 45.0 2.0 32 1-34 7-38 (684)
120 PF13245 AAA_19: Part of AAA d 68.9 6.2 0.00014 31.0 3.3 19 4-22 17-35 (76)
121 PF00448 SRP54: SRP54-type pro 68.6 4.5 9.7E-05 36.9 2.8 24 5-29 9-32 (196)
122 PRK06696 uridine kinase; Valid 68.5 4.6 0.0001 36.6 2.9 24 5-29 30-53 (223)
123 PRK08233 hypothetical protein; 68.3 2.6 5.7E-05 35.7 1.2 17 6-22 12-28 (182)
124 cd00071 GMPK Guanosine monopho 67.5 2.8 6E-05 35.7 1.2 36 5-40 7-42 (137)
125 PRK13886 conjugal transfer pro 67.1 5 0.00011 38.5 3.0 40 4-45 10-50 (241)
126 cd02034 CooC The accessory pro 66.3 5.4 0.00012 33.5 2.7 40 5-45 7-47 (116)
127 PRK10416 signal recognition pa 65.7 5.5 0.00012 39.1 3.0 25 5-30 122-146 (318)
128 PF00004 AAA: ATPase family as 65.3 3 6.4E-05 32.9 0.9 18 5-22 6-23 (132)
129 PF00910 RNA_helicase: RNA hel 65.2 7.9 0.00017 31.4 3.4 22 5-26 6-27 (107)
130 PRK07667 uridine kinase; Provi 64.7 6.1 0.00013 35.2 2.9 31 5-37 25-55 (193)
131 cd02020 CMPK Cytidine monophos 64.3 4.1 8.8E-05 33.1 1.5 18 5-22 7-24 (147)
132 KOG1144|consensus 63.2 6.2 0.00014 44.4 3.1 60 287-348 629-688 (1064)
133 TIGR01420 pilT_fam pilus retra 62.4 6.5 0.00014 38.5 2.8 32 5-37 130-161 (343)
134 PF13238 AAA_18: AAA domain; P 61.8 5.7 0.00012 31.2 1.9 17 5-21 6-22 (129)
135 PF01202 SKI: Shikimate kinase 61.7 4.6 9.9E-05 34.7 1.5 16 7-22 2-17 (158)
136 TIGR01313 therm_gnt_kin carboh 61.2 4.2 9E-05 34.4 1.1 17 5-21 6-22 (163)
137 cd02025 PanK Pantothenate kina 61.1 8.6 0.00019 35.4 3.2 18 5-22 7-24 (220)
138 PF13614 AAA_31: AAA domain; P 61.0 7.8 0.00017 32.1 2.7 25 4-29 8-32 (157)
139 TIGR03263 guanyl_kin guanylate 60.8 4.6 9.9E-05 34.5 1.3 35 5-40 9-43 (180)
140 PF00142 Fer4_NifH: 4Fe-4S iro 58.8 6.9 0.00015 38.6 2.3 40 7-47 10-49 (273)
141 TIGR02524 dot_icm_DotB Dot/Icm 58.8 9.4 0.0002 38.2 3.3 36 5-40 142-178 (358)
142 TIGR02525 plasmid_TraJ plasmid 58.7 10 0.00022 38.4 3.5 34 5-38 157-190 (372)
143 PF05729 NACHT: NACHT domain 58.5 7.2 0.00016 31.8 2.0 19 5-23 8-26 (166)
144 TIGR00708 cobA cob(I)alamin ad 57.6 11 0.00024 34.6 3.3 26 4-30 12-37 (173)
145 cd02019 NK Nucleoside/nucleoti 57.4 11 0.00024 28.4 2.8 17 5-21 7-23 (69)
146 PRK05703 flhF flagellar biosyn 57.3 8.9 0.00019 39.2 2.9 18 5-22 229-246 (424)
147 COG4240 Predicted kinase [Gene 57.2 10 0.00022 37.7 3.1 29 4-33 57-85 (300)
148 PF02562 PhoH: PhoH-like prote 57.1 14 0.0003 34.7 3.8 40 5-45 27-68 (205)
149 PRK00771 signal recognition pa 57.1 9.7 0.00021 39.3 3.1 26 5-31 103-128 (437)
150 cd02021 GntK Gluconate kinase 56.9 5.5 0.00012 33.1 1.1 18 5-22 7-24 (150)
151 PRK06547 hypothetical protein; 56.8 6 0.00013 35.3 1.4 17 5-21 23-39 (172)
152 cd00561 CobA_CobO_BtuR ATP:cor 56.6 11 0.00023 34.0 3.0 26 4-30 9-34 (159)
153 PRK13947 shikimate kinase; Pro 56.3 6.6 0.00014 33.3 1.5 18 5-22 9-26 (171)
154 COG0857 Pta BioD-like N-termin 55.8 9.1 0.0002 38.7 2.7 27 1-28 7-33 (354)
155 TIGR01425 SRP54_euk signal rec 55.7 10 0.00022 39.3 3.1 25 5-30 108-132 (429)
156 PRK05480 uridine/cytidine kina 55.6 7.2 0.00016 34.6 1.7 17 5-21 14-30 (209)
157 PRK09270 nucleoside triphospha 55.4 11 0.00023 34.4 2.8 26 5-30 41-66 (229)
158 TIGR00176 mobB molybdopterin-g 55.3 11 0.00024 33.0 2.8 29 5-35 7-35 (155)
159 PRK14722 flhF flagellar biosyn 55.0 12 0.00027 38.0 3.5 29 5-33 145-173 (374)
160 PRK03839 putative kinase; Prov 55.0 7 0.00015 33.8 1.5 18 5-22 8-25 (180)
161 PHA00729 NTP-binding motif con 55.0 7 0.00015 37.3 1.6 18 4-22 25-42 (226)
162 PF13671 AAA_33: AAA domain; P 54.9 6 0.00013 32.1 1.0 17 5-21 7-23 (143)
163 COG0132 BioD Dethiobiotin synt 54.7 9.6 0.00021 36.3 2.5 102 1-122 7-118 (223)
164 TIGR02173 cyt_kin_arch cytidyl 54.5 6.5 0.00014 32.9 1.2 18 5-22 8-25 (171)
165 COG1348 NifH Nitrogenase subun 53.7 11 0.00024 37.4 2.7 42 6-48 10-51 (278)
166 PRK08118 topology modulation p 53.3 7.8 0.00017 34.1 1.5 18 5-22 9-26 (167)
167 TIGR02322 phosphon_PhnN phosph 52.8 8 0.00017 33.2 1.5 18 5-22 9-26 (179)
168 cd02023 UMPK Uridine monophosp 51.8 9.2 0.0002 33.6 1.7 17 5-21 7-23 (198)
169 COG0455 flhG Antiactivator of 51.3 12 0.00026 36.0 2.6 42 6-47 12-56 (262)
170 PF12774 AAA_6: Hydrolytic ATP 51.0 5.9 0.00013 37.3 0.4 19 4-22 39-57 (231)
171 cd02028 UMPK_like Uridine mono 50.9 14 0.00031 32.8 2.8 23 5-28 7-29 (179)
172 PRK13975 thymidylate kinase; P 50.9 9.2 0.0002 33.1 1.6 18 5-22 10-27 (196)
173 PRK13974 thymidylate kinase; P 50.7 19 0.0004 32.6 3.6 35 5-40 11-49 (212)
174 COG0703 AroK Shikimate kinase 49.9 9 0.00019 35.3 1.4 19 5-23 10-28 (172)
175 PRK11545 gntK gluconate kinase 49.8 9.2 0.0002 33.4 1.4 18 5-22 3-20 (163)
176 COG0532 InfB Translation initi 49.7 26 0.00057 37.4 4.9 80 125-253 64-144 (509)
177 cd03114 ArgK-like The function 49.4 22 0.00048 30.8 3.7 32 5-37 7-38 (148)
178 PRK06762 hypothetical protein; 49.3 11 0.00024 32.0 1.8 17 5-21 10-26 (166)
179 PRK04182 cytidylate kinase; Pr 49.2 8.8 0.00019 32.3 1.2 18 5-22 8-25 (180)
180 TIGR01360 aden_kin_iso1 adenyl 49.1 10 0.00022 32.2 1.6 18 5-22 11-28 (188)
181 PF03205 MobB: Molybdopterin g 49.0 31 0.00068 29.8 4.5 42 5-47 8-49 (140)
182 COG0529 CysC Adenylylsulfate k 49.0 16 0.00034 34.8 2.8 26 5-31 31-56 (197)
183 KOG1533|consensus 49.0 17 0.00037 36.2 3.2 27 4-31 9-35 (290)
184 TIGR01359 UMP_CMP_kin_fam UMP- 48.3 10 0.00022 32.5 1.4 18 5-22 7-24 (183)
185 PF01583 APS_kinase: Adenylyls 48.2 16 0.00035 32.9 2.7 25 6-31 11-35 (156)
186 PRK14719 bifunctional RNAse/5- 47.3 19 0.00042 36.3 3.4 33 186-223 9-44 (360)
187 KOG0635|consensus 47.1 17 0.00037 34.3 2.8 24 6-30 40-63 (207)
188 PRK06526 transposase; Provisio 47.1 14 0.00031 35.1 2.3 24 5-29 106-129 (254)
189 PF00580 UvrD-helicase: UvrD/R 46.8 18 0.0004 32.7 2.9 29 5-33 21-51 (315)
190 PRK06995 flhF flagellar biosyn 46.6 19 0.00042 37.9 3.4 29 5-33 264-292 (484)
191 cd01673 dNK Deoxyribonucleosid 46.6 12 0.00025 32.6 1.5 26 5-37 7-32 (193)
192 COG1428 Deoxynucleoside kinase 46.3 13 0.00029 35.6 2.0 25 5-33 12-36 (216)
193 PF00625 Guanylate_kin: Guanyl 45.9 9.9 0.00021 33.2 1.0 36 4-39 9-44 (183)
194 PRK05541 adenylylsulfate kinas 45.7 22 0.00047 30.6 3.1 24 5-29 15-38 (176)
195 COG3265 GntK Gluconate kinase 45.5 11 0.00023 35.0 1.2 19 5-23 3-21 (161)
196 PRK14974 cell division protein 45.5 20 0.00042 35.9 3.1 25 5-30 148-172 (336)
197 TIGR02881 spore_V_K stage V sp 45.0 14 0.0003 34.3 1.9 18 5-22 50-67 (261)
198 PRK00889 adenylylsulfate kinas 44.9 21 0.00046 30.7 2.9 23 5-28 12-34 (175)
199 PRK05986 cob(I)alamin adenolsy 44.7 21 0.00046 33.3 3.0 26 4-30 29-54 (191)
200 PRK15453 phosphoribulokinase; 44.6 18 0.0004 35.9 2.7 22 5-27 13-34 (290)
201 PRK06217 hypothetical protein; 44.5 11 0.00025 32.9 1.2 36 5-45 9-47 (183)
202 COG0572 Udk Uridine kinase [Nu 44.3 16 0.00034 35.0 2.2 18 5-22 16-33 (218)
203 TIGR00313 cobQ cobyric acid sy 44.2 15 0.00033 37.9 2.2 114 1-119 3-131 (475)
204 PRK02261 methylaspartate mutas 44.1 33 0.00072 29.9 4.0 92 112-236 31-127 (137)
205 COG2804 PulE Type II secretory 44.0 20 0.00043 38.2 3.0 31 5-37 266-296 (500)
206 TIGR00235 udk uridine kinase. 43.7 15 0.00032 32.9 1.8 18 5-22 14-31 (207)
207 cd00464 SK Shikimate kinase (S 43.7 14 0.00031 30.3 1.6 18 5-22 7-24 (154)
208 PF08303 tRNA_lig_kinase: tRNA 43.6 12 0.00026 34.7 1.2 18 5-22 7-24 (168)
209 PF01695 IstB_IS21: IstB-like 43.1 21 0.00045 32.0 2.6 24 5-29 55-78 (178)
210 PF00437 T2SE: Type II/IV secr 43.0 22 0.00047 32.9 2.8 30 5-36 135-164 (270)
211 cd01120 RecA-like_NTPases RecA 42.1 25 0.00053 28.2 2.7 19 5-23 7-25 (165)
212 PRK09435 membrane ATPase/prote 42.1 28 0.00062 34.8 3.6 32 5-37 64-95 (332)
213 TIGR00376 DNA helicase, putati 41.9 23 0.00049 38.1 3.1 27 5-32 181-207 (637)
214 PRK07952 DNA replication prote 41.3 25 0.00055 33.4 3.0 24 5-29 107-130 (244)
215 PLN02348 phosphoribulokinase 41.2 22 0.00048 36.7 2.8 19 5-23 57-75 (395)
216 PRK12402 replication factor C 40.9 21 0.00046 33.3 2.4 19 5-23 44-62 (337)
217 COG4195 Phage-related replicat 40.9 24 0.00052 33.8 2.7 39 94-145 120-158 (208)
218 PRK12724 flagellar biosynthesi 40.8 25 0.00055 36.7 3.2 26 5-30 231-256 (432)
219 COG1484 DnaC DNA replication p 40.6 23 0.00049 33.7 2.6 28 5-34 113-140 (254)
220 TIGR02538 type_IV_pilB type IV 40.5 23 0.00049 37.4 2.8 31 5-37 324-354 (564)
221 PRK10751 molybdopterin-guanine 40.4 37 0.00079 31.0 3.8 40 5-46 14-53 (173)
222 PF07517 SecA_DEAD: SecA DEAD- 40.2 20 0.00044 34.8 2.2 25 6-31 99-123 (266)
223 KOG2878|consensus 39.9 23 0.00051 34.8 2.6 29 4-32 38-67 (282)
224 cd01129 PulE-GspE PulE/GspE Th 39.9 25 0.00055 33.4 2.8 31 5-37 88-118 (264)
225 PF01935 DUF87: Domain of unkn 39.5 26 0.00057 31.3 2.7 17 6-22 32-48 (229)
226 PRK08084 DNA replication initi 39.5 25 0.00054 32.5 2.6 24 5-29 53-76 (235)
227 PRK13946 shikimate kinase; Pro 39.4 16 0.00034 32.2 1.3 18 5-22 18-35 (184)
228 PF02492 cobW: CobW/HypB/UreG, 39.3 33 0.00071 30.1 3.3 28 5-34 8-35 (178)
229 cd00227 CPT Chloramphenicol (C 39.3 19 0.00041 31.2 1.7 18 5-22 10-27 (175)
230 cd02029 PRK_like Phosphoribulo 39.2 26 0.00057 34.7 2.9 23 5-28 7-29 (277)
231 PRK01184 hypothetical protein; 39.2 15 0.00033 31.8 1.1 22 5-31 9-30 (184)
232 PRK07261 topology modulation p 38.9 17 0.00038 31.9 1.5 17 5-21 8-24 (171)
233 COG0645 Predicted kinase [Gene 38.7 13 0.00029 34.4 0.8 18 6-23 10-27 (170)
234 PRK06893 DNA replication initi 38.3 27 0.00059 32.0 2.7 24 5-29 47-70 (229)
235 PRK13948 shikimate kinase; Pro 38.3 16 0.00036 33.0 1.2 18 5-22 18-35 (182)
236 PRK08727 hypothetical protein; 38.2 27 0.00058 32.2 2.7 24 5-29 49-72 (233)
237 TIGR00017 cmk cytidylate kinas 38.1 18 0.00039 33.5 1.5 18 5-22 10-27 (217)
238 PRK00652 lpxK tetraacyldisacch 37.8 29 0.00064 34.5 3.0 31 3-34 57-87 (325)
239 PRK05439 pantothenate kinase; 37.8 32 0.00069 34.2 3.2 19 5-23 94-112 (311)
240 PRK03731 aroL shikimate kinase 37.8 20 0.00043 30.6 1.6 18 5-22 10-27 (171)
241 cd01918 HprK_C HprK/P, the bif 37.7 19 0.00041 32.3 1.5 16 5-20 22-37 (149)
242 PRK10436 hypothetical protein; 37.6 28 0.0006 36.3 2.9 33 5-39 226-258 (462)
243 KOG3347|consensus 37.5 19 0.00041 33.7 1.5 21 1-22 12-32 (176)
244 TIGR03574 selen_PSTK L-seryl-t 37.5 31 0.00067 31.7 2.9 24 5-29 7-30 (249)
245 cd02071 MM_CoA_mut_B12_BD meth 37.4 60 0.0013 27.1 4.4 84 112-229 27-111 (122)
246 PRK03846 adenylylsulfate kinas 37.4 31 0.00068 30.6 2.8 23 5-28 32-54 (198)
247 cd00009 AAA The AAA+ (ATPases 37.3 24 0.00051 27.2 1.8 18 5-22 27-44 (151)
248 TIGR02880 cbbX_cfxQ probable R 37.2 26 0.00057 33.5 2.5 22 5-27 66-87 (284)
249 cd01428 ADK Adenylate kinase ( 37.0 19 0.00041 30.9 1.4 18 5-22 7-24 (194)
250 PF07728 AAA_5: AAA domain (dy 36.9 24 0.00052 29.0 1.9 17 5-21 7-23 (139)
251 PRK09183 transposase/IS protei 36.9 30 0.00064 32.8 2.7 24 5-29 110-133 (259)
252 PRK12377 putative replication 36.8 31 0.00068 32.9 2.9 24 5-29 109-132 (248)
253 cd01125 repA Hexameric Replica 36.2 27 0.00058 31.9 2.3 21 5-27 9-29 (239)
254 cd01124 KaiC KaiC is a circadi 36.2 40 0.00086 28.6 3.2 30 5-35 7-37 (187)
255 PRK13949 shikimate kinase; Pro 35.8 20 0.00043 31.6 1.3 18 5-22 9-26 (169)
256 cd02024 NRK1 Nicotinamide ribo 35.7 20 0.00044 32.8 1.4 17 5-21 7-23 (187)
257 PRK12726 flagellar biosynthesi 35.7 33 0.00073 35.7 3.1 24 5-29 214-237 (407)
258 PRK09518 bifunctional cytidyla 35.5 20 0.00043 38.7 1.5 18 5-22 9-26 (712)
259 cd01394 radB RadB. The archaea 34.8 35 0.00075 30.3 2.7 25 5-30 27-51 (218)
260 PRK11860 bifunctional 3-phosph 34.7 21 0.00046 38.2 1.5 18 5-22 450-467 (661)
261 PRK14527 adenylate kinase; Pro 34.7 22 0.00049 31.2 1.5 18 5-22 14-31 (191)
262 PLN03025 replication factor C 34.7 25 0.00054 33.7 1.9 18 5-22 42-59 (319)
263 TIGR03015 pepcterm_ATPase puta 34.5 21 0.00046 32.3 1.4 18 5-22 51-68 (269)
264 PRK14532 adenylate kinase; Pro 34.3 21 0.00046 30.9 1.3 18 5-22 8-25 (188)
265 cd00404 Aconitase_swivel Aconi 34.0 23 0.0005 29.5 1.3 50 194-245 38-88 (88)
266 PRK14493 putative bifunctional 34.0 37 0.0008 32.9 2.9 29 5-36 9-37 (274)
267 PRK05057 aroK shikimate kinase 33.9 22 0.00047 31.3 1.3 18 5-22 12-29 (172)
268 TIGR02768 TraA_Ti Ti-type conj 33.8 35 0.00077 37.4 3.1 27 5-32 376-402 (744)
269 cd02027 APSK Adenosine 5'-phos 33.7 28 0.0006 29.9 1.9 23 5-28 7-29 (149)
270 PRK12737 gatY tagatose-bisphos 33.6 34 0.00073 33.6 2.6 33 198-230 202-234 (284)
271 KOG3022|consensus 33.6 38 0.00083 34.1 3.0 42 6-48 57-101 (300)
272 PF01113 DapB_N: Dihydrodipico 33.4 31 0.00068 28.9 2.1 31 189-220 82-112 (124)
273 TIGR03575 selen_PSTK_euk L-ser 33.3 36 0.00078 34.3 2.8 25 5-29 7-31 (340)
274 PRK13764 ATPase; Provisional 33.1 41 0.00088 36.5 3.3 19 5-23 265-283 (602)
275 PRK13833 conjugal transfer pro 33.1 43 0.00092 33.4 3.3 33 5-37 152-184 (323)
276 PRK02496 adk adenylate kinase; 33.1 26 0.00056 30.4 1.6 18 5-22 9-26 (184)
277 PHA02530 pseT polynucleotide k 32.8 23 0.00049 33.0 1.3 17 5-21 10-26 (300)
278 PRK06921 hypothetical protein; 32.8 34 0.00074 32.6 2.5 24 5-28 125-148 (266)
279 TIGR02640 gas_vesic_GvpN gas v 32.4 25 0.00055 33.0 1.5 18 5-22 29-46 (262)
280 PRK10536 hypothetical protein; 32.2 43 0.00092 32.9 3.1 32 5-38 82-114 (262)
281 PRK12723 flagellar biosynthesi 32.1 39 0.00084 34.5 2.9 18 5-22 182-199 (388)
282 PRK04040 adenylate kinase; Pro 32.1 29 0.00064 31.3 1.8 18 5-22 10-27 (188)
283 smart00487 DEXDc DEAD-like hel 31.9 44 0.00096 27.1 2.7 18 4-21 31-48 (201)
284 PRK12269 bifunctional cytidyla 31.9 25 0.00053 39.6 1.6 18 5-22 42-59 (863)
285 cd02030 NDUO42 NADH:Ubiquinone 31.8 27 0.00059 31.7 1.6 17 6-22 8-24 (219)
286 PRK14530 adenylate kinase; Pro 31.6 27 0.00059 31.4 1.5 18 5-22 11-28 (215)
287 PRK13477 bifunctional pantoate 31.6 24 0.00052 37.4 1.3 17 5-21 292-308 (512)
288 TIGR02533 type_II_gspE general 31.5 31 0.00066 36.0 2.1 30 5-36 250-279 (486)
289 PF06068 TIP49: TIP49 C-termin 31.2 21 0.00046 37.1 0.8 18 5-22 58-75 (398)
290 cd03116 MobB Molybdenum is an 30.9 46 0.00099 29.6 2.8 33 5-39 9-41 (159)
291 PF04851 ResIII: Type III rest 30.9 26 0.00057 28.9 1.2 25 5-33 33-57 (184)
292 COG0194 Gmk Guanylate kinase [ 30.8 38 0.00083 32.0 2.4 39 4-44 11-49 (191)
293 COG1936 Predicted nucleotide k 30.6 25 0.00055 33.0 1.2 24 1-30 5-28 (180)
294 PRK06761 hypothetical protein; 30.5 41 0.00089 33.0 2.7 32 5-38 11-42 (282)
295 PF13191 AAA_16: AAA ATPase do 30.4 38 0.00082 28.4 2.1 20 5-24 32-51 (185)
296 TIGR02237 recomb_radB DNA repa 30.4 46 0.00099 29.3 2.7 24 5-29 20-43 (209)
297 TIGR02782 TrbB_P P-type conjug 30.2 50 0.0011 32.1 3.2 32 5-36 140-171 (299)
298 PRK11889 flhF flagellar biosyn 30.0 46 0.00099 35.1 3.0 25 5-30 249-273 (436)
299 PRK08181 transposase; Validate 30.0 43 0.00094 32.3 2.7 24 5-29 114-137 (269)
300 cd01122 GP4d_helicase GP4d_hel 29.9 43 0.00092 30.7 2.5 25 5-29 38-62 (271)
301 PRK07429 phosphoribulokinase; 29.9 28 0.00061 34.5 1.4 18 5-22 16-33 (327)
302 TIGR03420 DnaA_homol_Hda DnaA 29.9 35 0.00076 30.1 1.9 18 5-22 46-63 (226)
303 TIGR00554 panK_bact pantothena 29.9 48 0.001 32.5 3.0 18 5-22 70-87 (290)
304 TIGR00635 ruvB Holliday juncti 29.7 30 0.00064 32.3 1.5 18 5-22 38-55 (305)
305 cd02072 Glm_B12_BD B12 binding 29.7 74 0.0016 28.0 3.8 37 198-235 81-122 (128)
306 COG1102 Cmk Cytidylate kinase 29.7 33 0.00071 32.3 1.7 22 5-30 8-29 (179)
307 PF12846 AAA_10: AAA-like doma 29.5 49 0.0011 29.6 2.8 25 5-30 9-33 (304)
308 cd02026 PRK Phosphoribulokinas 29.4 32 0.00069 33.0 1.7 18 5-22 7-24 (273)
309 TIGR00455 apsK adenylylsulfate 29.4 36 0.00078 29.6 1.9 18 5-22 26-43 (184)
310 PRK08116 hypothetical protein; 29.2 48 0.001 31.6 2.8 23 5-28 122-144 (268)
311 PRK08903 DnaA regulatory inact 29.2 41 0.00089 30.2 2.2 18 5-22 50-67 (227)
312 PF03215 Rad17: Rad17 cell cyc 29.1 29 0.00063 36.7 1.5 18 5-22 53-70 (519)
313 PRK12727 flagellar biosynthesi 29.1 51 0.0011 35.7 3.2 30 5-34 358-387 (559)
314 PF13401 AAA_22: AAA domain; P 29.0 43 0.00092 26.7 2.1 19 5-23 12-30 (131)
315 TIGR00677 fadh2_euk methylenet 28.9 53 0.0011 31.8 3.1 92 101-200 152-255 (281)
316 PRK00023 cmk cytidylate kinase 28.8 32 0.0007 31.8 1.6 18 5-22 12-29 (225)
317 PRK15455 PrkA family serine pr 28.5 41 0.0009 37.0 2.5 28 5-47 111-138 (644)
318 PRK14723 flhF flagellar biosyn 28.5 52 0.0011 36.8 3.3 26 5-30 193-218 (767)
319 cd00820 PEPCK_HprK Phosphoenol 28.5 26 0.00055 29.9 0.8 13 5-17 23-35 (107)
320 PRK13695 putative NTPase; Prov 28.3 67 0.0015 27.7 3.3 24 5-29 8-31 (174)
321 PF12086 DUF3563: Protein of u 28.0 48 0.001 26.2 2.1 29 268-296 15-43 (59)
322 cd00880 Era_like Era (E. coli 27.9 30 0.00065 26.8 1.0 14 5-18 4-17 (163)
323 PRK08939 primosomal protein Dn 27.7 57 0.0012 31.9 3.1 24 5-29 164-187 (306)
324 PRK14494 putative molybdopteri 27.7 51 0.0011 31.4 2.7 28 6-35 10-37 (229)
325 PRK00091 miaA tRNA delta(2)-is 27.3 30 0.00064 34.1 1.1 18 5-22 12-29 (307)
326 PLN02840 tRNA dimethylallyltra 27.2 28 0.0006 36.2 0.9 18 5-22 29-46 (421)
327 PRK09825 idnK D-gluconate kina 27.2 37 0.0008 30.2 1.6 17 5-21 11-27 (176)
328 CHL00181 cbbX CbbX; Provisiona 27.0 40 0.00086 32.6 1.8 18 5-22 67-84 (287)
329 PF03308 ArgK: ArgK protein; 26.9 56 0.0012 32.3 2.9 39 5-48 37-75 (266)
330 PRK14490 putative bifunctional 26.6 81 0.0017 31.3 3.9 32 5-39 13-44 (369)
331 KOG3354|consensus 26.5 39 0.00085 32.0 1.6 18 5-22 20-37 (191)
332 PRK12338 hypothetical protein; 26.5 32 0.00069 34.5 1.1 18 5-22 12-29 (319)
333 PF13481 AAA_25: AAA domain; P 26.3 45 0.00097 28.7 1.9 18 5-22 40-57 (193)
334 cd01130 VirB11-like_ATPase Typ 26.3 34 0.00074 30.2 1.2 17 5-21 33-49 (186)
335 PLN02200 adenylate kinase fami 26.2 38 0.00081 31.7 1.5 18 5-22 51-68 (234)
336 PF09156 Anthrax-tox_M: Anthra 26.2 93 0.002 30.1 4.1 58 170-247 46-103 (287)
337 PRK14528 adenylate kinase; Pro 26.2 39 0.00085 30.0 1.6 23 174-196 136-158 (186)
338 COG0541 Ffh Signal recognition 26.2 58 0.0013 34.5 3.0 25 6-31 109-133 (451)
339 PRK13894 conjugal transfer ATP 26.2 68 0.0015 31.7 3.3 32 5-36 156-187 (319)
340 PRK09361 radB DNA repair and r 25.9 61 0.0013 29.0 2.7 25 5-30 31-55 (225)
341 PRK06067 flagellar accessory p 25.8 68 0.0015 29.1 3.0 31 5-36 33-64 (234)
342 PRK00625 shikimate kinase; Pro 25.6 40 0.00086 30.2 1.5 18 5-22 8-25 (173)
343 TIGR01448 recD_rel helicase, p 25.6 60 0.0013 35.5 3.1 21 5-26 346-366 (720)
344 TIGR01351 adk adenylate kinase 25.4 38 0.00082 30.3 1.3 17 5-21 7-23 (210)
345 TIGR00682 lpxK tetraacyldisacc 25.2 69 0.0015 31.7 3.2 32 2-34 35-66 (311)
346 PRK10078 ribose 1,5-bisphospho 25.1 37 0.00081 29.8 1.2 16 5-20 10-25 (186)
347 PLN02165 adenylate isopentenyl 25.0 34 0.00075 34.5 1.1 18 5-22 51-68 (334)
348 COG0563 Adk Adenylate kinase a 25.0 43 0.00092 30.3 1.6 17 5-21 8-24 (178)
349 cd03278 ABC_SMC_barmotin Barmo 24.8 35 0.00076 30.7 1.0 16 5-20 30-45 (197)
350 cd02022 DPCK Dephospho-coenzym 24.7 57 0.0012 28.6 2.3 15 5-19 7-21 (179)
351 PF00406 ADK: Adenylate kinase 24.7 48 0.001 27.9 1.7 18 5-22 4-21 (151)
352 PRK14531 adenylate kinase; Pro 24.6 44 0.00096 29.3 1.6 18 5-22 10-27 (183)
353 PRK00080 ruvB Holliday junctio 24.2 42 0.00091 32.3 1.4 18 5-22 59-76 (328)
354 TIGR00101 ureG urease accessor 24.0 47 0.001 30.2 1.7 18 5-22 9-26 (199)
355 KOG1534|consensus 24.0 71 0.0015 31.7 2.9 25 4-29 10-34 (273)
356 cd04165 GTPBP1_like GTPBP1-lik 23.9 52 0.0011 30.4 1.9 17 188-204 128-144 (224)
357 KOG1145|consensus 23.8 3.3E+02 0.0071 30.4 8.0 13 192-204 247-259 (683)
358 PRK01368 murD UDP-N-acetylmura 23.8 60 0.0013 33.2 2.6 23 8-31 113-135 (454)
359 PRK04220 2-phosphoglycerate ki 23.8 44 0.00095 33.3 1.5 18 5-22 100-117 (301)
360 PRK01906 tetraacyldisaccharide 23.5 88 0.0019 31.4 3.6 32 2-34 63-94 (338)
361 COG2403 Predicted GTPase [Gene 23.4 63 0.0014 34.1 2.6 34 2-37 132-165 (449)
362 PRK14961 DNA polymerase III su 23.4 49 0.0011 32.6 1.8 18 5-22 46-63 (363)
363 TIGR01087 murD UDP-N-acetylmur 23.3 65 0.0014 31.9 2.6 22 8-30 111-132 (433)
364 cd03271 ABC_UvrA_II The excisi 23.2 99 0.0021 29.7 3.7 23 5-27 29-52 (261)
365 PF08245 Mur_ligase_M: Mur lig 23.2 64 0.0014 27.8 2.3 21 8-29 5-25 (188)
366 TIGR00073 hypB hydrogenase acc 23.1 95 0.0021 27.8 3.4 18 5-22 30-47 (207)
367 COG0635 HemN Coproporphyrinoge 23.1 65 0.0014 33.0 2.6 66 170-241 99-169 (416)
368 smart00763 AAA_PrkA PrkA AAA d 23.1 54 0.0012 33.6 2.0 34 5-47 86-119 (361)
369 PRK00279 adk adenylate kinase; 23.1 48 0.001 29.8 1.5 18 5-22 8-25 (215)
370 PRK06835 DNA replication prote 23.1 67 0.0014 31.9 2.6 28 5-34 191-218 (329)
371 PLN02540 methylenetetrahydrofo 22.9 1.1E+02 0.0025 33.0 4.5 140 101-252 160-317 (565)
372 PRK06645 DNA polymerase III su 22.3 50 0.0011 34.9 1.7 19 5-23 51-69 (507)
373 PRK13851 type IV secretion sys 22.3 51 0.0011 33.0 1.7 29 5-36 170-198 (344)
374 cd03238 ABC_UvrA The excision 22.3 36 0.00078 30.6 0.6 13 5-17 29-41 (176)
375 COG0523 Putative GTPases (G3E 22.1 60 0.0013 32.4 2.1 27 6-35 10-36 (323)
376 PF02606 LpxK: Tetraacyldisacc 22.1 90 0.002 31.0 3.3 32 2-34 42-73 (326)
377 TIGR02087 LEUD_arch 3-isopropy 22.1 56 0.0012 29.6 1.7 53 194-251 70-122 (154)
378 PF07724 AAA_2: AAA domain (Cd 22.1 59 0.0013 29.0 1.9 18 5-22 11-28 (171)
379 KOG0744|consensus 22.1 54 0.0012 34.2 1.8 18 5-22 185-202 (423)
380 COG1136 SalX ABC-type antimicr 21.9 36 0.00079 32.6 0.6 30 268-303 173-202 (226)
381 PLN02796 D-glycerate 3-kinase 21.7 63 0.0014 32.9 2.2 18 5-22 108-125 (347)
382 PRK13396 3-deoxy-7-phosphohept 21.7 5.1E+02 0.011 26.6 8.5 27 197-223 270-301 (352)
383 COG1224 TIP49 DNA helicase TIP 21.6 52 0.0011 34.7 1.6 18 5-22 73-90 (450)
384 PRK13889 conjugal transfer rel 21.5 75 0.0016 36.5 2.9 27 5-32 370-396 (988)
385 PHA02085 hypothetical protein 21.4 32 0.00069 28.9 0.0 24 83-107 9-32 (87)
386 PRK00081 coaE dephospho-CoA ki 21.2 45 0.00098 29.8 1.0 15 5-19 10-24 (194)
387 PRK14956 DNA polymerase III su 21.0 48 0.001 35.1 1.3 19 5-23 48-66 (484)
388 PRK05537 bifunctional sulfate 21.0 68 0.0015 34.2 2.4 19 5-23 400-418 (568)
389 KOG1805|consensus 20.9 82 0.0018 36.6 3.0 25 7-32 695-719 (1100)
390 PRK04663 murD UDP-N-acetylmura 20.9 79 0.0017 31.7 2.7 22 8-30 117-138 (438)
391 cd03274 ABC_SMC4_euk Eukaryoti 20.9 41 0.00089 30.7 0.7 14 5-18 33-46 (212)
392 PF08666 SAF: SAF domain; Int 20.8 82 0.0018 22.7 2.1 48 243-313 16-63 (63)
393 cd03270 ABC_UvrA_I The excisio 20.7 53 0.0012 30.0 1.3 15 5-19 29-43 (226)
394 PRK13900 type IV secretion sys 20.6 74 0.0016 31.6 2.4 28 5-35 168-195 (332)
395 COG3842 PotA ABC-type spermidi 20.5 52 0.0011 33.5 1.3 23 4-39 38-60 (352)
396 COG1341 Predicted GTPase or GT 20.5 82 0.0018 32.9 2.7 36 5-41 81-119 (398)
397 cd03273 ABC_SMC2_euk Eukaryoti 20.4 61 0.0013 29.8 1.7 17 5-21 33-49 (251)
398 COG1149 MinD superfamily P-loo 20.3 57 0.0012 32.7 1.5 40 6-47 11-53 (284)
399 PRK02797 4-alpha-L-fucosyltran 20.3 1.1E+02 0.0024 31.2 3.5 56 191-250 243-301 (322)
400 PHA03133 thymidine kinase; Pro 20.2 80 0.0017 32.7 2.6 29 5-36 48-76 (368)
401 PF07475 Hpr_kinase_C: HPr Ser 20.2 60 0.0013 30.1 1.6 16 5-20 26-41 (171)
402 KOG3062|consensus 20.1 1E+02 0.0022 30.8 3.2 35 8-46 12-46 (281)
No 1
>PLN02759 Formate--tetrahydrofolate ligase
Probab=100.00 E-value=6.6e-102 Score=789.27 Aligned_cols=262 Identities=64% Similarity=1.002 Sum_probs=242.7
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch--------------------------------
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH-------------------------------- 48 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa-------------------------------- 48 (353)
|||||+|||||||||||+|||++|+||++++|||||||||||||||||
T Consensus 77 itPTP~GEGKTTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLl 156 (637)
T PLN02759 77 ITPTPLGEGKSTTTIGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLL 156 (637)
T ss_pred cCCCCCCCCchhHHHHHHHHHHHHhCCeeEEEeecCCcCCcCCcccccCCCcccccccHhhhcccccchHHHHHHHHHHH
Confidence 899999999999999999999988999999999999999999999994
Q ss_pred --------------------------------------------------------------------------------
Q psy7967 49 -------------------------------------------------------------------------------- 48 (353)
Q Consensus 49 -------------------------------------------------------------------------------- 48 (353)
T Consensus 157 aA~idn~i~~~n~~~~~~l~~~l~p~~~~~~r~~~~~~~~rl~~l~i~~~~p~~lt~~e~~~~~~L~IDp~~I~w~RvlD 236 (637)
T PLN02759 157 AAAIDTRVFHEATQSDKALFNRLCPANKEGKRSFAAVMFRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWRRVMD 236 (637)
T ss_pred HHHHHHHHhhccccchhhhhhccccccccccccccHHHHHHHHhhccCcCCccccCHHHhhhhhccCcCcceeEEEeecc
Confidence
Q ss_pred ----------------------------------hhhh-h-----------------------------hhccchhhhhh
Q psy7967 49 ----------------------------------MALL-L-----------------------------SGLTGAMAVLL 64 (353)
Q Consensus 49 ----------------------------------ma~l-l-----------------------------~~~~Ga~~vll 64 (353)
|||| | |++.|+|++||
T Consensus 237 ~NDR~LR~I~vGlgg~~~G~~Re~gFdITvASEiMAILcLa~dl~Dlk~Rlg~ivvg~~~~g~pVta~DL~~~GAmt~LL 316 (637)
T PLN02759 237 VNDRFLRKITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPVTADDLGVGGALTVLM 316 (637)
T ss_pred ccchhhhceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHhHHHHH
Confidence 6666 4 99999999999
Q ss_pred hhccCCceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCCeEEeecccccccccccccccccccCCCCCCeE
Q psy7967 65 KDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVTEAGFGSDIGMEKFFNIKCRTSGKIPDAV 144 (353)
Q Consensus 65 ~da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~~vvTeAGfg~dlg~EkF~nik~r~~g~~p~a~ 144 (353)
+||++|||||||||||+|||||||||||||||||+||++||+|+|..||||||||||+|||+|||+|||||.+|+.|||+
T Consensus 317 kDAikPNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~~gl~P~a~ 396 (637)
T PLN02759 317 KDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCA 396 (637)
T ss_pred HhhhCccceeecCCCceEEecCCcccccccchHHHHHHHHHhhcCCCCeEEEecccCCCCchhheecccccccCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHHHhhhhcCCCceecCcceecHHHHHhhhhcCCCc
Q psy7967 145 VLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSNGLKFGVPVVVKGKREFSIIQRRRLLRLDINR 224 (353)
Q Consensus 145 vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~~gvP~vv~g~R~fs~~~~rrl~klgInk 224 (353)
|||||+||||||||++.+.+|+|+++++.+||+++|++||+||.+||+|+++||+|+||+ ||+
T Consensus 397 VlVaTvRALK~hGG~~~~~pg~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVa-----------------iN~ 459 (637)
T PLN02759 397 VIVATVRALKMHGGGPAVVAGKPLDHAYTTENVELVEAGCVNLARHIENTKSYGVNVVVA-----------------INM 459 (637)
T ss_pred EEEeehHHHHhcCCCCcccCCccchhhhcccCHHHHHhhhhhHHHHHHHHHHcCCCeEEE-----------------ecC
Confidence 999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCCCCHHHHhhhhcCCCCCCceeeeeeecCCCCCCccccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEEeecCCC
Q psy7967 225 TDPNTLTPEEITKFVRLNINPDTISWRRVGQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMVAEDKEG 304 (353)
Q Consensus 225 ~~p~~lt~e~i~~~n~L~IDp~~I~WkRvglg~~~~G~~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvVg~t~dg 304 (353)
|+ .|++..+ ++-+
T Consensus 460 F~-----------------------------~Dt~~Ei-------------------------~~v~------------- 472 (637)
T PLN02759 460 FA-----------------------------TDTEAEL-------------------------EAVR------------- 472 (637)
T ss_pred CC-----------------------------CCCHHHH-------------------------HHHH-------------
Confidence 99 5554333 2221
Q ss_pred CceeeccccccccCcceEEeecccccCcccHHHHHHHHHHHhhcccCCC
Q psy7967 305 RPVTLDDLAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQF 353 (353)
Q Consensus 305 ~PVta~DL~a~~~GAm~a~~~~~w~~Gg~ga~~la~~v~~~~e~~~~~~ 353 (353)
+. |.+.|+.++++|+||++||+|+.|||++|++++|+++++|
T Consensus 473 ------~~-~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e~~~s~f 514 (637)
T PLN02759 473 ------QA-ALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACEGNSQPF 514 (637)
T ss_pred ------HH-HHHcCCCcEEEechhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 11 2345767899999999999999999999999999644444
No 2
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=3e-101 Score=780.00 Aligned_cols=253 Identities=57% Similarity=0.903 Sum_probs=235.8
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch--------------------------------
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH-------------------------------- 48 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa-------------------------------- 48 (353)
|||||+|||||||||||+|||+ ++||++++|||||||||||||||||
T Consensus 71 itPTP~GEGKtTttIGL~~aL~-~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAitaA~NLl 149 (587)
T PRK13507 71 ITPTPLGEGKSTTTMGLVQGLG-KRGKKVSGAIRQPSGGPTMNIKGSAAGGGLSQCIPLTPFSLGLTGDINAIMNAHNLA 149 (587)
T ss_pred cCCCCCCCCccchhhhHHHHHH-hhcCceEEEEecCCcCCcCCcccccCCCccccccchhhccccccChHHHHHHHHHHH
Confidence 7999999999999999999998 5999999999999999999999994
Q ss_pred ---------------------------------------------------------------------------hhhh-
Q psy7967 49 ---------------------------------------------------------------------------MALL- 52 (353)
Q Consensus 49 ---------------------------------------------------------------------------ma~l- 52 (353)
||||
T Consensus 150 aA~idn~i~~~n~~~~~~l~~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~vGlG~~~~G~~Re~gFdITvASEiMAIlc 229 (587)
T PRK13507 150 MVALTARMQHERNYTDEQLARRGLKRLDIDPTRVEMGWIIDFCAQALRNIIIGIGGKTDGYMMQSGFGIAVSSEVMAILS 229 (587)
T ss_pred HHHHHHHHhccCccccchhhcccccccCCCcceeeEeecccccchhhhceeeCcCCCCCCccccCCceeeHHHHHHHHHH
Confidence 8888
Q ss_pred h-----------------------------hhccchhhhhhhhccCCceeeeecCcceeeecccchhhhhcchhHHHHHH
Q psy7967 53 L-----------------------------SGLTGAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLI 103 (353)
Q Consensus 53 l-----------------------------~~~~Ga~~vll~da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~ 103 (353)
| |++.|+|++||+||++|||||||||||+||||||||||||||||||||++
T Consensus 230 La~~l~Dlk~Rlg~ivva~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~vHgGPFANIAHG~nSviAt~~ 309 (587)
T PRK13507 230 VATDLKDLRERIGKIVVAYDKNGKPVTTADLEVDGAMTAWMVRAINPNLLQTIEGQPVFVHAGPFANIAIGQSSIIADRV 309 (587)
T ss_pred HcCCHHHHHHHHhcEEEEEcCCCCeeeHHhccchHhHHHHHHhhcCcceeeecCCCceEEecCCcchhhcccHHHHHHHH
Confidence 5 99999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCeEEeecccccccccccccccccccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhh
Q psy7967 104 ALKLVGAEGYVVTEAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKG 183 (353)
Q Consensus 104 al~l~g~~~~vvTeAGfg~dlg~EkF~nik~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g 183 (353)
||+|+ ||||||||||+|||+|||+|||||.+|++|||+|||||+||||||||++...+|+|+++++.+||+++|++|
T Consensus 310 ALkla---dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hgG~~~~~~g~~l~~~l~~enl~al~~G 386 (587)
T PRK13507 310 GLKLA---DYHVTESGFGADIGFEKFWNLKCRLSGLKPDCAVIVATIRALKMHGGGPKVVPGKPLPEEYTKENVGLVEKG 386 (587)
T ss_pred HHhcC---CeEEeccccCCCCChhheeeeeccccCCCCCEEEEEeEhHHHHHcCCCCccccCCccchhccccCHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhcCCCceecCcceecHHHHHhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCceeeeeeecCCCCCCcc
Q psy7967 184 CVNLEKHVSNGLKFGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWRRVGQSPTEKNME 263 (353)
Q Consensus 184 ~~nl~~hi~n~~~~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~I~WkRvglg~~~~G~~ 263 (353)
|+||.+||+|+++||+|+||+ ||+|+ .|++..+
T Consensus 387 ~~NL~~Hi~n~~~fg~pvVVa-----------------iN~F~-----------------------------~Dt~~Ei- 419 (587)
T PRK13507 387 CANLLHHIGTVKKSGINPVVC-----------------INAFY-----------------------------TDTHAEI- 419 (587)
T ss_pred HHHHHHHHHHHHHcCCCeEEE-----------------eCCCC-----------------------------CCCHHHH-
Confidence 999999999999999999999 99999 5544333
Q ss_pred ccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEEeecCCCCceeeccccccccCcceEEeecccccCcccHHHHHHHHH
Q psy7967 264 RSTGFDISVASEVMAALALSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVCENWAKGGAGAADLADAVI 343 (353)
Q Consensus 264 RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvVg~t~dg~PVta~DL~a~~~GAm~a~~~~~w~~Gg~ga~~la~~v~ 343 (353)
++-++ + |.+.|+ .+++|+||++||+||+|||++|+
T Consensus 420 ------------------------~~l~~-------------------~-~~~~g~-~~~v~~~wa~GGeGa~eLA~~Vv 454 (587)
T PRK13507 420 ------------------------AIVRR-------------------L-AEQAGA-RVAVSRHWEKGGEGALELADAVI 454 (587)
T ss_pred ------------------------HHHHH-------------------H-HHHcCC-CEEEechhhccchhHHHHHHHHH
Confidence 22211 1 233566 68899999999999999999999
Q ss_pred HHhhcc
Q psy7967 344 KATELK 349 (353)
Q Consensus 344 ~~~e~~ 349 (353)
+++|++
T Consensus 455 ~a~e~~ 460 (587)
T PRK13507 455 DACNEP 460 (587)
T ss_pred HHhhCc
Confidence 999953
No 3
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=100.00 E-value=1.5e-101 Score=781.68 Aligned_cols=249 Identities=62% Similarity=0.982 Sum_probs=192.2
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch--------------------------------
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH-------------------------------- 48 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa-------------------------------- 48 (353)
|||||+|||||||||||+|||+ |+||++++|||||||||||||||||
T Consensus 62 itPTp~GEGKtTttiGL~~al~-~lg~~~~~~lRePSlGP~fG~KGGAaGGG~sqv~Pme~iNLhfTGD~hAIt~A~NLl 140 (557)
T PF01268_consen 62 ITPTPAGEGKTTTTIGLAQALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDFHAITAANNLL 140 (557)
T ss_dssp SS--TTS-SHHHHHHHHHHHHH-HTT--EEEEE----CHHHHCST-STTCETTEEEESHHHHHTTTTSHHHHHHHHHHHH
T ss_pred cCCCCCCCCceeHHHHHHHHHH-hcCCceEEEEecCCCCCccCccccccCCceeEEechHHeeccccCcHHHHHHHHHHH
Confidence 7999999999999999999995 8999999999999999999999994
Q ss_pred --------------------------------------------------------------hhhh-h------------
Q psy7967 49 --------------------------------------------------------------MALL-L------------ 53 (353)
Q Consensus 49 --------------------------------------------------------------ma~l-l------------ 53 (353)
|||| |
T Consensus 141 aA~idn~i~~gn~l~iDp~~I~w~Rv~D~NDR~LR~i~iglg~~~~G~~r~~~FdIT~ASEiMAilcLa~~l~Dlk~Rl~ 220 (557)
T PF01268_consen 141 AAMIDNHIYHGNELNIDPRRITWKRVLDMNDRALRNIVIGLGGKANGVPREDGFDITVASEIMAILCLATDLEDLKERLG 220 (557)
T ss_dssp HHHHHHHHHTTSTT-EECCCE---EEESS--GGGSSEEESTSSCCC---EEE-EEEGGGSHHHHHHHC-SSHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCcceeeeeeeccccchhhhheeeCCCCCCCCCcccCceeeEechhhheehhhhcCHHHHHHHHh
Confidence 8998 5
Q ss_pred -----------------hhccchhhhhhhhccCCceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCCeEEe
Q psy7967 54 -----------------SGLTGAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVT 116 (353)
Q Consensus 54 -----------------~~~~Ga~~vll~da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~~vvT 116 (353)
|++.|+|++|||||++|||||||||||+|||||||||||||||||+||++||+|+ |||||
T Consensus 221 ~ivv~~~~~~~pvta~dl~~~Gam~~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhG~nSviAt~~al~l~---dyvvT 297 (557)
T PF01268_consen 221 RIVVAYTKDGKPVTAEDLGAAGAMTALLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKMALKLA---DYVVT 297 (557)
T ss_dssp C-EEEEETTS-EEECHHHT-HHHHHHHTTTTTS-EEEEETTS-EEEE-----SSSS--B--HHHHHHHHHHS---SEEEE
T ss_pred CEEEEEcCCCCeEEHHHcCCcHhHHHHHHhhcCchhhhhcccCceEEeccccccccccCchHHHHHHHHhhc---ceeec
Confidence 9999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ecccccccccccccccccccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHHHhhhh
Q psy7967 117 EAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSNGLK 196 (353)
Q Consensus 117 eAGfg~dlg~EkF~nik~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~ 196 (353)
|||||+|||+|||+|||||.+|+.|||+|||||+||||||||++. .++.+||+++|++||+||++||+|+++
T Consensus 298 EAGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~~--------~~l~~eNl~al~~G~~NL~rHIeNik~ 369 (557)
T PF01268_consen 298 EAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHGGVAK--------DDLNEENLEALEKGFANLERHIENIKK 369 (557)
T ss_dssp EBSSSTTTHHHHHHHTHHHHHT---SEEEEEEEHHHHHHHTT--G--------GGTTS--HHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccChhhhcCccchhcccCcceEEEeeechHHHhhcCCCc--------cccCccCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999964 679999999999999999999999999
Q ss_pred cCCCceecCcceecHHHHHhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCceeeeeeecCCCCCCccccccccchhhhhH
Q psy7967 197 FGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWRRVGQSPTEKNMERSTGFDISVASEV 276 (353)
Q Consensus 197 ~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~I~WkRvglg~~~~G~~RetgFdITvASEI 276 (353)
||+|+||+ ||+|+ .|++.++
T Consensus 370 fGvpvVVA-----------------IN~F~-----------------------------tDT~aEi-------------- 389 (557)
T PF01268_consen 370 FGVPVVVA-----------------INRFP-----------------------------TDTDAEI-------------- 389 (557)
T ss_dssp TT--EEEE-----------------EE--T-----------------------------TS-HHHH--------------
T ss_pred cCCCeEEE-----------------ecCCC-----------------------------CCCHHHH--------------
Confidence 99999999 99998 5554333
Q ss_pred HHHHHhcCCHHHHHHHhcCeEEeecCCCCceeeccccccccCcceEEeecccccCcccHHHHHHHHHHHh-hcccCCC
Q psy7967 277 MAALALSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVCENWAKGGAGAADLADAVIKAT-ELKDKQF 353 (353)
Q Consensus 277 MAILcLA~dl~DLk~RLgrIvVg~t~dg~PVta~DL~a~~~GAm~a~~~~~w~~Gg~ga~~la~~v~~~~-e~~~~~~ 353 (353)
++-++. |++.|+ .+++|+||++||+|++|||++|++++ |.++++|
T Consensus 390 -----------~~I~~~--------------------~~~~Gv-~~avs~~wa~GGeGa~eLA~~Vv~a~ee~~~~~f 435 (557)
T PF01268_consen 390 -----------ELIREL--------------------CEELGV-RAAVSEHWAKGGEGAVELAEAVVEACEEEEPSNF 435 (557)
T ss_dssp -----------HHHHHH--------------------CCCCCE-EEEEC-HHHHGGGGCHHHHHHHHHH-HHHS----
T ss_pred -----------HHHHHH--------------------HHhCCC-CEEEechhhcccccHHHHHHHHHHHhhccCCCCc
Confidence 332221 344676 49999999999999999999999999 4444444
No 4
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=100.00 E-value=1e-99 Score=772.11 Aligned_cols=254 Identities=65% Similarity=1.021 Sum_probs=232.8
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch--------------------------------
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH-------------------------------- 48 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa-------------------------------- 48 (353)
|||||+|||||||||||+|||++++||++++|||||||||||||||||
T Consensus 76 itPTP~GEGKtTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~HAItaA~NLl 155 (625)
T PTZ00386 76 MNPTPLGEGKSTTTIGLAQSLGAHLHRKTFACIRQPSQGPTFGIKGGAAGGGYSQVIPMEDFNLHGTGDIHAITAANNLL 155 (625)
T ss_pred cCCCCCCCCccchhhhhHHHHHHHhCcceEEEEecCCcCCcCCcccccCCCccccccchhhccccccchHHHHHHHHHHH
Confidence 899999999999999999999978999999999999999999999994
Q ss_pred --------------------------------------------------------------------------------
Q psy7967 49 -------------------------------------------------------------------------------- 48 (353)
Q Consensus 49 -------------------------------------------------------------------------------- 48 (353)
T Consensus 156 aA~iDn~i~~~n~~~d~~l~~~l~~~~r~~~~~~~~rl~~lgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR 235 (625)
T PTZ00386 156 AAALDTRIFHERTQSDAALYRRLTDELKKFTPIMLKRLEKLGISKTDPKQLTEEERVRFARLDIDPDTISWRRVTDVNDR 235 (625)
T ss_pred HHHHHHHHhhccccchhHHHhhhccccccccHHHHHHHHhhccCcCCccccCHHHhhhhhhcCcCcceeEEEeeccccch
Confidence
Q ss_pred ------------------------------hhhh-h-----------------------------hhccchhhhhhhhcc
Q psy7967 49 ------------------------------MALL-L-----------------------------SGLTGAMAVLLKDAV 68 (353)
Q Consensus 49 ------------------------------ma~l-l-----------------------------~~~~Ga~~vll~da~ 68 (353)
|||| | |++.|+|++||+||+
T Consensus 236 ~LR~I~vGlG~~~~G~~Re~gFdITvASEiMAIl~La~dl~Dlr~Rlg~ivva~~~~g~pVta~DL~~~GAmt~LLkDAi 315 (625)
T PTZ00386 236 MLREITIGQGKEEKGITRKTGFDISVASEVMAILALATDLADMRQRLGAIVVAKSKSGEPVTAEDLGCAGAMTVLMKDTI 315 (625)
T ss_pred hhhceeeCcCCCCCCCcccCCceeEHHHHHHHHHHHhCCHHHHHHHHhceeeeecCCCCceeHHHcCchHHHHHHHHhhc
Confidence 6666 4 999999999999999
Q ss_pred CCceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCCeEEeecccccccccccccccccccCCCCCCeEEEEe
Q psy7967 69 QPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVTEAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVT 148 (353)
Q Consensus 69 ~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~~vvTeAGfg~dlg~EkF~nik~r~~g~~p~a~vlvA 148 (353)
+|||||||||||+|||||||||||||||||+||++||+|+|.+||||||||||+|||+|||+|||||.+|++|||+||||
T Consensus 316 kPNLvQTlEgtPa~VHgGPFANIAhG~nSviAt~~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~sgl~P~a~VlVa 395 (625)
T PTZ00386 316 EPTLMQTLEGTPVLVHAGPFGNIAHGNSSIVADQIALKLAGQDGFVLTEAGFGADIGCEKFFNIKCRTSGLKPDAAVLVA 395 (625)
T ss_pred ccceeeecCCCceEEecCCcchhhcccHHHHHHHHHHHhCCCCCeEEEeccccCCCCchhhccccccccCCCcCEEEEEe
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHHHhhhhcCCCceecCcceecHHHHHhhhhcCCCcCCCC
Q psy7967 149 TVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSNGLKFGVPVVVKGKREFSIIQRRRLLRLDINRTDPN 228 (353)
Q Consensus 149 tiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~ 228 (353)
|+||||||||++. .++.+||+++|++||+||.+||+|+++||+|+||+ ||+|+
T Consensus 396 TvRALK~hGG~~~--------~~l~~enl~al~~G~~NL~~Hien~~~fgvpvVVA-----------------IN~F~-- 448 (625)
T PTZ00386 396 TVRALKFHGGVEP--------VVAGKENLEAVRKGLSNLQRHIQNIRKFGVPVVVA-----------------LNKFS-- 448 (625)
T ss_pred ehHHHHHhCCCCc--------cccCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEE-----------------ecCCC--
Confidence 9999999999986 56678999999999999999999999999999999 99999
Q ss_pred CCCHHHHhhhhcCCCCCCceeeeeeecCCCCCCccccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEEeecCCCCcee
Q psy7967 229 TLTPEEITKFVRLNINPDTISWRRVGQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMVAEDKEGRPVT 308 (353)
Q Consensus 229 ~lt~e~i~~~n~L~IDp~~I~WkRvglg~~~~G~~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvVg~t~dg~PVt 308 (353)
.|+...+ |+-++
T Consensus 449 ---------------------------tDT~~Ei-------------------------~~i~~---------------- 460 (625)
T PTZ00386 449 ---------------------------TDTDAEL-------------------------ELVKE---------------- 460 (625)
T ss_pred ---------------------------CCCHHHH-------------------------HHHHH----------------
Confidence 5554433 22211
Q ss_pred ecccccc-ccCcceEEeecccccCcccHHHHHHHHHHHhhcccCCC
Q psy7967 309 LDDLAAK-QAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQF 353 (353)
Q Consensus 309 a~DL~a~-~~GAm~a~~~~~w~~Gg~ga~~la~~v~~~~e~~~~~~ 353 (353)
. |. +.||.++++|+||++||+||+|||++|++++++++++|
T Consensus 461 ---~-~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~~~~s~f 502 (625)
T PTZ00386 461 ---L-ALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTENVPSNF 502 (625)
T ss_pred ---H-HHHhcCCccEEEechhhccchhHHHHHHHHHHHHhcCCCCC
Confidence 1 23 46877899999999999999999999999998644444
No 5
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-98 Score=748.19 Aligned_cols=249 Identities=61% Similarity=0.955 Sum_probs=230.8
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch--------------------------------
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH-------------------------------- 48 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa-------------------------------- 48 (353)
|||||+|||||||||||+|||+ ++||++++|||||||||||||||||
T Consensus 60 itPTPaGEGKsTttiGL~~al~-~lgK~~i~alRePSlGP~fGiKGGAaGGGyaqv~PmediNLHfTGD~HAItaAnNll 138 (554)
T COG2759 60 ITPTPAGEGKTTTTIGLVDALN-KLGKKAIIALREPSLGPVFGIKGGAAGGGYAQVLPMEDINLHFTGDFHAITAANNLL 138 (554)
T ss_pred cCCCCCCCCcceeeehHHHHHH-hcCchheEEeccCCcCCccccccccCCCceeeeeehhhccccccCchhHHHHHHHHH
Confidence 7999999999999999999997 7999999999999999999999994
Q ss_pred --------------------------------------------------------------hhhh-h------------
Q psy7967 49 --------------------------------------------------------------MALL-L------------ 53 (353)
Q Consensus 49 --------------------------------------------------------------ma~l-l------------ 53 (353)
|||| |
T Consensus 139 sA~Idnhi~~gn~l~ID~~rI~wkRv~DmNDRaLR~I~vglg~~~~G~~RedgFdITvASEiMAIlcLa~dlkDlk~Rl~ 218 (554)
T COG2759 139 SAAIDNHIYHGNELGIDPRRITWKRVVDMNDRALRSIVVGLGGPENGVPREDGFDITVASEIMAILCLATDLKDLKERLG 218 (554)
T ss_pred HHHHHhhhhcCcccCcCcceEEEEeeeccchhhhhheeeccCCccCCcccCCCceeehHHHHHHHHHHhhhHHHHHHHHh
Confidence 8998 5
Q ss_pred -----------------hhccchhhhhhhhccCCceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCCeEEe
Q psy7967 54 -----------------SGLTGAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVT 116 (353)
Q Consensus 54 -----------------~~~~Ga~~vll~da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~~vvT 116 (353)
|++.|+|++|||||++|||||||||||+|||||||||||||||||+||++||+|+ |||||
T Consensus 219 ~iviay~~~~~PV~~~Dl~~~GAma~lLkDAikPNLvQTlEgtPa~VHgGPFANIAhGcnSiiAt~~AlkL~---dy~VT 295 (554)
T COG2759 219 RIVIAYDYDGKPVTAGDLKVEGAMAALLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSIIATKTALKLA---DYVVT 295 (554)
T ss_pred heEEEEecCCCceeeeccccchHHHHHHHhhccccceeecCCCceeEecCccchhhccchhHHHHHHHHhhc---CeEEE
Confidence 9999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ecccccccccccccccccccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHHHhhhh
Q psy7967 117 EAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSNGLK 196 (353)
Q Consensus 117 eAGfg~dlg~EkF~nik~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~ 196 (353)
|||||+|||+|||||||||.+|+.|||+|||||+||||||||++. +++++||++++++||+||.+||+|+++
T Consensus 296 EAGFgaDlGaEKF~dIK~r~~gl~PdavVlVATvRALK~hGG~~~--------~~l~~Env~avk~G~aNL~~Hi~Nikk 367 (554)
T COG2759 296 EAGFGADLGAEKFFDIKCRSSGLKPDAVVLVATVRALKMHGGVPK--------EDLTEENVDAVKKGFANLLKHIENIKK 367 (554)
T ss_pred ecccccccchhhhcceeccccCCCCCeEEEeeehHHHHHcCCCCh--------HHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999994 899999999999999999999999999
Q ss_pred cCCCceecCcceecHHHHHhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCceeeeeeecCCCCCCccccccccchhhhhH
Q psy7967 197 FGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWRRVGQSPTEKNMERSTGFDISVASEV 276 (353)
Q Consensus 197 ~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~I~WkRvglg~~~~G~~RetgFdITvASEI 276 (353)
||||+||+ ||+|. .|++. ||
T Consensus 368 fgvp~VVA-----------------IN~F~-----------------------------tDt~~--------------Ei 387 (554)
T COG2759 368 FGVPVVVA-----------------INKFP-----------------------------TDTEA--------------EI 387 (554)
T ss_pred cCCCeEEE-----------------eccCC-----------------------------CCCHH--------------HH
Confidence 99999999 99998 44432 33
Q ss_pred HHHHHhcCCHHHHHHHhcCeEEeecCCCCceeeccccccccCcceEEeecccccCcccHHHHHHHHHHHhhcccCCC
Q psy7967 277 MAALALSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQF 353 (353)
Q Consensus 277 MAILcLA~dl~DLk~RLgrIvVg~t~dg~PVta~DL~a~~~GAm~a~~~~~w~~Gg~ga~~la~~v~~~~e~~~~~~ 353 (353)
.+| + ++ |.+.| .++++|++|++||+|++|||++|++++++.+++|
T Consensus 388 ~~i----------~--------------------~~-~~~~g-v~~~ls~vwakGg~Gg~eLA~kVv~~~~~~~~~f 432 (554)
T COG2759 388 AAI----------E--------------------KL-CEEHG-VEVALSEVWAKGGEGGIELAKKVVEAIEQNDSEF 432 (554)
T ss_pred HHH----------H--------------------HH-HHHcC-CceeehhhhhccCccHHHHHHHHHHHHhCCcccc
Confidence 332 2 11 23456 4899999999999999999999999999877765
No 6
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=4.5e-95 Score=735.41 Aligned_cols=257 Identities=53% Similarity=0.846 Sum_probs=236.6
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch--------------------------------
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH-------------------------------- 48 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa-------------------------------- 48 (353)
|+|||+||||||||+||+|+|+ ++||+++.|||||||||+||+|||+
T Consensus 62 ~~PTp~GEGKTT~si~La~~la-~~Gk~~i~~LR~Pslg~~fg~kgga~GGGlsqvlpme~iNLHfTGD~hAItaA~NLl 140 (578)
T PRK13506 62 ITPTPLGEGKTVTTIGLTQGLN-ALGQKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMEELNLHLTGDIHAVSAAHNLA 140 (578)
T ss_pred cCCCCCCCCHHHHHHHHHHHHH-HhCCceEEEeccCCcCCccCCCCCCCCCCeeeeeeHhhccccccChHHHHHHHHHHH
Confidence 6899999999999999999997 6899999999999999999999993
Q ss_pred ----------------------------------------------------------------------------hhhh
Q psy7967 49 ----------------------------------------------------------------------------MALL 52 (353)
Q Consensus 49 ----------------------------------------------------------------------------ma~l 52 (353)
||||
T Consensus 141 aA~iDn~i~~gn~~~~~~~~~~~~~~~l~IDp~~I~w~Rv~DmNDR~LR~I~vglg~~~~G~~Re~gFdITvASEiMAIl 220 (578)
T PRK13506 141 AAAIDARLFHEQRLGYDAFEAQSGLPALDIDPEQILWKRVVDHNDRALRMITVGLGENGNGPEREDGFDITAASELMAIL 220 (578)
T ss_pred HHHHHHHHhccCccCccchhhhccccccCcCcCeeEEeecccccchhhhceeeCcCCCCCCCcccCCceeeHHHHHHHHH
Confidence 8888
Q ss_pred -h-----------------------------hhccchhhhhhhhccCCceeeeecCcceeeecccchhhhhcchhHHHHH
Q psy7967 53 -L-----------------------------SGLTGAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADL 102 (353)
Q Consensus 53 -l-----------------------------~~~~Ga~~vll~da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~ 102 (353)
| |++.|+|++|||||++|||||||||||+||||||||||||||||||||+
T Consensus 221 cLa~dl~Dlk~Rl~~ivv~~~~~g~pVta~DL~~~GAm~~LLkDAikPNLvQTlEgtPa~vHgGPFANIAhG~nSviAt~ 300 (578)
T PRK13506 221 ALSRDLKDMRQRIGRLVLAYNLQGQPITAEDLGVAGAMTVIMKDAIEPTLMQTLEGVPCLIHAGPFANIAHGNSSIIADR 300 (578)
T ss_pred HHcCCHHHHHHHhhcEEEEEcCCCCceeHHHccchHhHHHHHHHhccchhheecCCCeeEEecCCcccccccchHHHHHH
Confidence 5 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCeEEeecccccccccccccccccccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHh
Q psy7967 103 IALKLVGAEGYVVTEAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQK 182 (353)
Q Consensus 103 ~al~l~g~~~~vvTeAGfg~dlg~EkF~nik~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~ 182 (353)
+||+|+ ||||||||||+|||+|||+|||||.+|++|||+|||||+||||||||++...+|+|+++++.+||+++|++
T Consensus 301 ~aLkla---DyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~~~g~pl~~~l~~en~~al~~ 377 (578)
T PRK13506 301 IALKLA---DYVVTEGGFGSDMGFEKFCNIKARQSGKAPDCAVLVATLRALKANSGLYDLRPGQALPDSINAPDQARLEA 377 (578)
T ss_pred HHHhhc---CeEEeeccccCCCCCceeeeeeeccCCCCCceEEEEEEeehHHhcCCCCCcccCcccchhccccCHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhhhcCCCceecCcceecHHHHHhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCceeeeeeecCCCCCCc
Q psy7967 183 GCVNLEKHVSNGLKFGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWRRVGQSPTEKNM 262 (353)
Q Consensus 183 g~~nl~~hi~n~~~~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~I~WkRvglg~~~~G~ 262 (353)
||+||.+||+|+++||+|+||+ ||+|+ .|++..+
T Consensus 378 G~~NL~~Hi~n~~~fg~pvVVa-----------------iN~F~-----------------------------~Dt~~Ei 411 (578)
T PRK13506 378 GFANLKWHINNVAQYGLPVVVA-----------------INRFP-----------------------------TDTDEEL 411 (578)
T ss_pred HHHHHHHHHHHHHHcCCCeEEE-----------------ecCCC-----------------------------CCCHHHH
Confidence 9999999999999999999999 99999 5554333
Q ss_pred cccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEEeecCCCCceeeccccccccCcceEEeecccccCcccHHHHHHHH
Q psy7967 263 ERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVCENWAKGGAGAADLADAV 342 (353)
Q Consensus 263 ~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvVg~t~dg~PVta~DL~a~~~GAm~a~~~~~w~~Gg~ga~~la~~v 342 (353)
++-+ ++ |.+.++.++++|+||++||+|++|||++|
T Consensus 412 -------------------------~~~~-------------------~~-~~~~~~~~~~~~~~wa~GGeGa~eLA~~V 446 (578)
T PRK13506 412 -------------------------EWLK-------------------EA-VLLTGAFGCEISEAFAQGGEGATALAQAV 446 (578)
T ss_pred -------------------------HHHH-------------------HH-HHHcCCCcEEEechhhccchhHHHHHHHH
Confidence 2211 11 22335568999999999999999999999
Q ss_pred HHHhhcccCCC
Q psy7967 343 IKATELKDKQF 353 (353)
Q Consensus 343 ~~~~e~~~~~~ 353 (353)
++++|++ ++|
T Consensus 447 v~a~e~~-s~f 456 (578)
T PRK13506 447 VRACEQP-SQF 456 (578)
T ss_pred HHHhhCc-CCC
Confidence 9999853 444
No 7
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=100.00 E-value=8.7e-94 Score=720.48 Aligned_cols=245 Identities=66% Similarity=1.022 Sum_probs=225.3
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch--------------------------------
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH-------------------------------- 48 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa-------------------------------- 48 (353)
++|||+||||||||+||+|+|+ ++||++++|||||||||+||+|||+
T Consensus 46 ~~PTp~GEGKTT~si~La~~la-~~Gkk~l~~LR~PSlg~~fg~kggaaGGG~sqvlpme~iNLhfTGD~hAItaA~NLl 124 (524)
T cd00477 46 ITPTPAGEGKTTTTIGLAQALN-AHGKKAIACLREPSLGPTFGIKGGAAGGGYSQVIPMEEINLHFTGDIHAITAANNLL 124 (524)
T ss_pred CCCCCCCCCHHHHHHHHHHHHH-HhCCcEEEEEecCCcCcccCCCCCCCCCChhhcccHhhhcccccchHHHHHHHHHHH
Confidence 6899999999999999999997 5799999999999999999999993
Q ss_pred --------------------------------------------------------------hhhh-h------------
Q psy7967 49 --------------------------------------------------------------MALL-L------------ 53 (353)
Q Consensus 49 --------------------------------------------------------------ma~l-l------------ 53 (353)
|||| |
T Consensus 125 aA~iDn~i~~gn~l~iDp~~I~w~Rv~D~NDR~LR~iviglGg~~~G~~re~gFdITvASEiMAIlcLa~~l~DLk~Rl~ 204 (524)
T cd00477 125 AAAIDNHIHHGNRLDIDPRRITWKRVLDVNDRALRKIVIGLGGKENGVPRETGFDITVASEIMAILCLATDLEDLKERLG 204 (524)
T ss_pred HHHHHHHHhcccccCCCcceeEEEecccccchhhhceEeccCCCCCCccccCCceeeHHHHHHHHHHHcCCHHHHHHHHh
Confidence 8998 5
Q ss_pred -----------------hhccchhhhhhhhccCCceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCCeEEe
Q psy7967 54 -----------------SGLTGAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVT 116 (353)
Q Consensus 54 -----------------~~~~Ga~~vll~da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~~vvT 116 (353)
|++.|+|++|||||++|||||||||||+|||||||||||||||||+||++||+|+ |||||
T Consensus 205 ~ivv~~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhGcnSviAtk~al~la---DyvVT 281 (524)
T cd00477 205 RIVVAYSKDGEPVTAEDLGVAGAMAVLLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSIIADKIALKLA---DYVVT 281 (524)
T ss_pred CEEEEEcCCCCcEeHHHcCchHhHHHHHHhhhCccceeecCCCceEEecCCcccccccchHHHHHHHHHhhc---CeEEe
Confidence 9999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ecccccccccccccccccccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCc-cccHHHHHhhhhhHHHHHHhhh
Q psy7967 117 EAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT-EENLDLVQKGCVNLEKHVSNGL 195 (353)
Q Consensus 117 eAGfg~dlg~EkF~nik~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~-~en~~~l~~g~~nl~~hi~n~~ 195 (353)
|||||+|||+|||+|||||.+|++|||+||||||||||||||++. +++. +||+++|++||+||.+||+|++
T Consensus 282 EAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~--------~~l~~~en~~al~~G~~NL~~Hi~n~~ 353 (524)
T cd00477 282 EAGFGADLGAEKFFNIKCRYSGLKPDAVVLVATVRALKMHGGVPK--------VTLGLEENLEALEKGFANLRKHIENIK 353 (524)
T ss_pred eccccCCCCCceeeeeeeccCCCCCCEEEEEEehHHHHHhCCCCc--------ccCCCccCHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999885 5666 8999999999999999999999
Q ss_pred hcCCCceecCcceecHHHHHhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCceeeeeeecCCCCCCccccccccchhhhh
Q psy7967 196 KFGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWRRVGQSPTEKNMERSTGFDISVASE 275 (353)
Q Consensus 196 ~~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~I~WkRvglg~~~~G~~RetgFdITvASE 275 (353)
+||+|+||+ ||+|+ .|++..+
T Consensus 354 ~fg~p~VVa-----------------iN~F~-----------------------------~Dt~~Ei------------- 374 (524)
T cd00477 354 KFGVPVVVA-----------------INKFS-----------------------------TDTDAEL------------- 374 (524)
T ss_pred HcCCCeEEE-----------------ecCCC-----------------------------CCCHHHH-------------
Confidence 999999999 99999 5554333
Q ss_pred HHHHHHhcCCHHHHHHHhcCeEEeecCCCCceeeccccccccCcceEEeecccccCcccHHHHHHHHHHHhhcc
Q psy7967 276 VMAALALSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELK 349 (353)
Q Consensus 276 IMAILcLA~dl~DLk~RLgrIvVg~t~dg~PVta~DL~a~~~GAm~a~~~~~w~~Gg~ga~~la~~v~~~~e~~ 349 (353)
++-++ . |.+.|+ .+++|+||++||+|+.|||++|++++|++
T Consensus 375 ------------~~v~~-------------------~-~~~~g~-~~~~~~~~~~GG~Ga~eLA~~Vi~a~e~~ 415 (524)
T cd00477 375 ------------ALVRK-------------------L-AEEAGA-FVAVSEHWAEGGKGAVELAEAVIEACEQP 415 (524)
T ss_pred ------------HHHHH-------------------H-HHHcCC-CEEEehhhhhhhhhHHHHHHHHHHHhcCC
Confidence 22211 1 233565 78999999999999999999999999853
No 8
>KOG4230|consensus
Probab=100.00 E-value=5.5e-94 Score=729.98 Aligned_cols=258 Identities=68% Similarity=1.047 Sum_probs=241.9
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch--------------------------------
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH-------------------------------- 48 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa-------------------------------- 48 (353)
|||||+||||||||+||+|||++ |||.+|+|+||||||||||+||||
T Consensus 373 itptp~gegkst~t~glvqal~~-l~k~~iacvrqpsqgptfgvkggaagggysq~ipmdefnlhltgdihaitaannll 451 (935)
T KOG4230|consen 373 ITPTPLGEGKSTTTAGLVQALGA-LGKLAIACVRQPSQGPTFGVKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLL 451 (935)
T ss_pred cCCCCCCCCcchhHHHHHHHHHh-hCCcceeeecCCCcCCccccccccCCCccceeeehhhcccccccchhhhhhhhHHH
Confidence 89999999999999999999995 999999999999999999999993
Q ss_pred --------------------------------------------------------------------------------
Q psy7967 49 -------------------------------------------------------------------------------- 48 (353)
Q Consensus 49 -------------------------------------------------------------------------------- 48 (353)
T Consensus 452 aaaidtrmfhe~tq~daal~krlvp~kng~r~f~~~m~rrlkrl~i~k~dp~~lt~ee~~~farlnidpdtit~~rvldv 531 (935)
T KOG4230|consen 452 AAAIDTRMFHENTQSDAALYKRLVPVKNGKRKFTPSMIRRLKRLGIEKTDPEDLTPEEIKKFARLNIDPDTITINRVLDV 531 (935)
T ss_pred HHHHHHHHHhhcccchHHHHHhhccccCCeeecCHHHHHHHHHhccccCCcccCCHHHHHHhHcccCCCCeeEEEEEecc
Confidence
Q ss_pred ---------------------------------hhhh-h-----------------------------hhccchhhhhhh
Q psy7967 49 ---------------------------------MALL-L-----------------------------SGLTGAMAVLLK 65 (353)
Q Consensus 49 ---------------------------------ma~l-l-----------------------------~~~~Ga~~vll~ 65 (353)
|+|| | +|++|+++|||+
T Consensus 532 ndrflr~itig~a~tekg~tr~t~fdisvase~mailals~dl~dm~erlgrmvva~dk~g~pvtaedlgv~galtvllk 611 (935)
T KOG4230|consen 532 NDRFLRQITIGQAPTEKGHTRTTGFDISVASECMAILALSKDLNDMKERLGRMVVAADKYGEPVTAEDLGVSGALTVLLK 611 (935)
T ss_pred chhhhhheecccCccccCcccccccceehHHHHHHHHHHhccHHHHHHHhhcEEEeecCCCCcccHHhcCcchhHHHHHH
Confidence 7887 5 999999999999
Q ss_pred hccCCceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCC------eEEeecccccccccccccccccccCCC
Q psy7967 66 DAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEG------YVVTEAGFGSDIGMEKFFNIKCRTSGK 139 (353)
Q Consensus 66 da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~------~vvTeAGfg~dlg~EkF~nik~r~~g~ 139 (353)
||++|||||||||||||||+||||||+||.||||||++||+|+|.+. ||||||||++|+|||||||||||.||+
T Consensus 612 daikpnlmqtlegtpv~vhagpfanisigassiiadrialklvgte~~~keagyvvteagf~~dmgmekffnikcr~sgl 691 (935)
T KOG4230|consen 612 DAIKPNLMQTLEGTPVFVHAGPFANISIGASSIIADRIALKLVGTESRPKEAGYVVTEAGFASDMGMEKFFNIKCRYSGL 691 (935)
T ss_pred hhcchhHHhhccCCeeEEecccccccccchHHHHHHHHHHHhcCCCCCcccCceEEEecccccccchhheeeeeeecCCC
Confidence 99999999999999999999999999999999999999999999886 999999999999999999999999999
Q ss_pred CCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHHHhhhhcCCCceecCcceecHHHHHhhhh
Q psy7967 140 IPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSNGLKFGVPVVVKGKREFSIIQRRRLLR 219 (353)
Q Consensus 140 ~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~~gvP~vv~g~R~fs~~~~rrl~k 219 (353)
.||+||||||+||||+|||+|.+.+|+|++++|++||++++++||.||.+||+|+++||+||||+
T Consensus 692 ~p~avvlvatvralk~hgggp~v~pg~plp~~y~~en~dlv~kg~snl~k~i~n~~~fgipvvva--------------- 756 (935)
T KOG4230|consen 692 VPNAVVLVATVRALKLHGGGPKVKPGQPLPEEYTEENLDLVEKGCSNLVKQIENIKKFGIPVVVA--------------- 756 (935)
T ss_pred CCceEEEeehhHHHHhcCCCCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHhHHhcCCCEEEE---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCCCCCCHHHHhhhhcCCCCCCceeeeeeecCCCCCCccccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEEe
Q psy7967 220 LDINRTDPNTLTPEEITKFVRLNINPDTISWRRVGQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMVA 299 (353)
Q Consensus 220 lgInk~~p~~lt~e~i~~~n~L~IDp~~I~WkRvglg~~~~G~~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvVg 299 (353)
||+|. .++++.+ +.-++.
T Consensus 757 --in~f~-----------------------------tds~~ei-------------------------~~ir~~------ 774 (935)
T KOG4230|consen 757 --INKFK-----------------------------TDSEKEI-------------------------EAIREA------ 774 (935)
T ss_pred --ecccc-----------------------------CCCHHHH-------------------------HHHHHH------
Confidence 99998 5554433 222221
Q ss_pred ecCCCCceeeccccccccCcceEEeecccccCcccHHHHHHHHHHHhhccc
Q psy7967 300 EDKEGRPVTLDDLAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKD 350 (353)
Q Consensus 300 ~t~dg~PVta~DL~a~~~GAm~a~~~~~w~~Gg~ga~~la~~v~~~~e~~~ 350 (353)
+.++||.+|+-|+||++||+||++||++|+.||+.++
T Consensus 775 --------------al~aga~dav~snhwaeggkgai~la~av~~a~~~~s 811 (935)
T KOG4230|consen 775 --------------ALEAGAFDAVTSNHWAEGGKGAIELAKAVITACDSPS 811 (935)
T ss_pred --------------HHhcCCcccccccchhhcCccHHHHHHHHHHHhcCCc
Confidence 2357999999999999999999999999999998553
No 9
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=6.4e-91 Score=704.73 Aligned_cols=249 Identities=56% Similarity=0.921 Sum_probs=227.2
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch--------------------------------
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH-------------------------------- 48 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa-------------------------------- 48 (353)
++|||+||||||||+||+|+|+ ++||+++++||||||||+||+|||+
T Consensus 63 ~~PTp~GEGKTt~sinLA~~la-~~GkkvlliLR~Psl~~~fg~kggaaGGG~~qvlpme~inLhftGD~hAit~A~NLl 141 (557)
T PRK13505 63 INPTPAGEGKSTVTVGLGDALN-KIGKKTVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDFHAITSANNLL 141 (557)
T ss_pred CCCCCCCCCHHHHHHHHHHHHH-HcCCeEEEEEecCCcccccCCCCCcCCCCceeeecHhHccccccChHHHHHHHHHHH
Confidence 5899999999999999999997 6899999999999999999999993
Q ss_pred --------------------------------------------------------------hhhh-h------------
Q psy7967 49 --------------------------------------------------------------MALL-L------------ 53 (353)
Q Consensus 49 --------------------------------------------------------------ma~l-l------------ 53 (353)
|||| |
T Consensus 142 aA~idn~i~~gn~l~id~~~i~w~Rv~D~NDR~LR~i~iglg~~~~G~~re~gFdIT~ASEiMAilcLa~~l~Dl~~Rl~ 221 (557)
T PRK13505 142 AALIDNHIHQGNELGIDPRRITWKRVLDMNDRALRNIVVGLGGPANGVPREDGFDITVASEIMAILCLATDLKDLKERLG 221 (557)
T ss_pred HHHHHHHHhccCccCCCcceeEEEecccccchhhhceEeccCCCCCCCcccCCceeeHHHHHHHHHHHhCCHHHHHHHHh
Confidence 8998 5
Q ss_pred -----------------hhccchhhhhhhhccCCceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCCeEEe
Q psy7967 54 -----------------SGLTGAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVT 116 (353)
Q Consensus 54 -----------------~~~~Ga~~vll~da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~~vvT 116 (353)
|++.|+|++|||||++|||||||||||+|||||||||||||||||+||++||+|+ |||||
T Consensus 222 ~ivv~~~~~~~pvt~~dl~~~GAm~~lLkdAi~PnLvQTle~tPa~vHgGPFANIAhG~nSviAt~~al~la---dyvvT 298 (557)
T PRK13505 222 RIVVGYTYDGKPVTVKDLKVEGAMALLLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVLATKTALKLA---DYVVT 298 (557)
T ss_pred CEEEEEcCCCCceeHHHcCchHHHHHHHHhhcccceeeecCCCceEEecCCcchhhcccHHHHHHHHHHhhC---CEEEe
Confidence 9999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ecccccccccccccccccccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHHHhhhh
Q psy7967 117 EAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSNGLK 196 (353)
Q Consensus 117 eAGfg~dlg~EkF~nik~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~ 196 (353)
|||||+|||+|||+|||||.+|++|||+|||||+||||||||++. +++.+||++++++||.||+||++|+++
T Consensus 299 EaGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvraLK~hgg~~~--------~~l~~en~Eal~sGl~NL~RHIenvr~ 370 (557)
T PRK13505 299 EAGFGADLGAEKFLDIKCRKAGLKPDAVVIVATVRALKMHGGVAK--------DDLKEENVEALKKGFANLERHIENIRK 370 (557)
T ss_pred cccccCCCCCceeeeeecccCCCCCCEEEEEeehHHHHHcCCCCh--------hhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999885 789999999999999999999999999
Q ss_pred cCCCceecCcceecHHHHHhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCceeeeeeecCCCCCCccccccccchhhhhH
Q psy7967 197 FGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWRRVGQSPTEKNMERSTGFDISVASEV 276 (353)
Q Consensus 197 ~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~I~WkRvglg~~~~G~~RetgFdITvASEI 276 (353)
||+|+||+ ||||+ .+++..+
T Consensus 371 FGvPvVVA-----------------INKFd-----------------------------~DTe~Ei-------------- 390 (557)
T PRK13505 371 FGVPVVVA-----------------INKFV-----------------------------TDTDAEI-------------- 390 (557)
T ss_pred cCCCEEEE-----------------EeCCC-----------------------------CCCHHHH--------------
Confidence 99999999 99999 4443222
Q ss_pred HHHHHhcCCHHHHHHHhcCeEEeecCCCCceeeccccccccCcceEEeecccccCcccHHHHHHHHHHHhhcccCCC
Q psy7967 277 MAALALSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQF 353 (353)
Q Consensus 277 MAILcLA~dl~DLk~RLgrIvVg~t~dg~PVta~DL~a~~~GAm~a~~~~~w~~Gg~ga~~la~~v~~~~e~~~~~~ 353 (353)
- .++ ++ |.+.|+ ++++|+||++||+|+++||++|++++++.+.+|
T Consensus 391 ~----------~I~--------------------~~-c~e~Gv-~va~~~~~~~Gg~Gai~LA~aVveA~~~~~s~f 435 (557)
T PRK13505 391 A----------ALK--------------------EL-CEELGV-EVALSEVWAKGGEGGVELAEKVVELIEEGESNF 435 (557)
T ss_pred H----------HHH--------------------HH-HHHcCC-CEEEecccccCCcchHHHHHHHHHHHhcCCCCC
Confidence 1 122 11 233465 789999999999999999999999998644443
No 10
>PLN02759 Formate--tetrahydrofolate ligase
Probab=100.00 E-value=2e-53 Score=434.38 Aligned_cols=182 Identities=43% Similarity=0.686 Sum_probs=163.9
Q ss_pred hccchhh-hhhhhccCCceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCCeEEeecccccccccccccccc
Q psy7967 55 GLTGAMA-VLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVTEAGFGSDIGMEKFFNIK 133 (353)
Q Consensus 55 ~~~Ga~~-vll~da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~~vvTeAGfg~dlg~EkF~nik 133 (353)
..+|||+ |+|||.| ||| ++| |+|++..|||
T Consensus 124 AaGGGysQv~Pme~i--NLH--fTG---D~hAItaA~N------------------------------------------ 154 (637)
T PLN02759 124 AAGGGYSQVIPMEEF--NLH--LTG---DIHAITAANN------------------------------------------ 154 (637)
T ss_pred cCCCcccccccHhhh--ccc--ccc---hHHHHHHHHH------------------------------------------
Confidence 4678896 9999999 888 679 7999999997
Q ss_pred cccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHHHhhhhcCCCceecCcceecHHH
Q psy7967 134 CRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSNGLKFGVPVVVKGKREFSIIQ 213 (353)
Q Consensus 134 ~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~~gvP~vv~g~R~fs~~~ 213 (353)
+|+|.++..-+ |+..|++..+|+ +.||..++|+|+|+++|
T Consensus 155 -----------LlaA~idn~i~--------------~~n~~~~~~l~~---------------~l~p~~~~~~r~~~~~~ 194 (637)
T PLN02759 155 -----------LLAAAIDTRVF--------------HEATQSDKALFN---------------RLCPANKEGKRSFAAVM 194 (637)
T ss_pred -----------HHHHHHHHHHh--------------hccccchhhhhh---------------ccccccccccccccHHH
Confidence 55577777333 566677766554 35788899999999999
Q ss_pred HHhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCceeeeee-------------ecCCCCCCccccccccchhhhhHHHHH
Q psy7967 214 RRRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAAL 280 (353)
Q Consensus 214 ~rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~I~WkRv-------------glg~~~~G~~RetgFdITvASEIMAIL 280 (353)
+|||+||||.|+|||+||+|||+.|++|+|||++|+|+|| |+|++.+|++||++|||||||||||||
T Consensus 195 ~~rl~~l~i~~~~p~~lt~~e~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~vGlgg~~~G~~Re~gFdITvASEiMAIL 274 (637)
T PLN02759 195 FRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWRRVMDVNDRFLRKITVGQGPEEKGMTRETGFDITVASEIMAVL 274 (637)
T ss_pred HHHHHhhccCcCCccccCHHHhhhhhccCcCcceeEEEeeccccchhhhceeeCcCCCCCCCcccCCceeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 799999999999999999999999999
Q ss_pred HhcCCHHHHHHHhcCeEEeecCCCCceeeccccccccCcceEEeecc
Q psy7967 281 ALSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVCEN 327 (353)
Q Consensus 281 cLA~dl~DLk~RLgrIvVg~t~dg~PVta~DL~a~~~GAm~a~~~~~ 327 (353)
|||+|++|||+||||||||||+||+|||++||++ .|||.+.+.+.
T Consensus 275 cLa~dl~Dlk~Rlg~ivvg~~~~g~pVta~DL~~--~GAmt~LLkDA 319 (637)
T PLN02759 275 ALTTSLADMRERLGKMVIGNSKAGEPVTADDLGV--GGALTVLMKDA 319 (637)
T ss_pred HHcCCHHHHHHHHhCEEEEEcCCCCceeHHHcCc--hHhHHHHHHhh
Confidence 9999999999999999999999999999999999 99998776653
No 11
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=100.00 E-value=1.4e-52 Score=427.59 Aligned_cols=178 Identities=43% Similarity=0.637 Sum_probs=160.4
Q ss_pred hccchhh-hhhhhccCCceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCCeEEeecccccccccccccccc
Q psy7967 55 GLTGAMA-VLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVTEAGFGSDIGMEKFFNIK 133 (353)
Q Consensus 55 ~~~Ga~~-vll~da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~~vvTeAGfg~dlg~EkF~nik 133 (353)
..+|||+ |+|||.| ||| ++| |+|++..|||
T Consensus 123 AaGGGysQv~Pme~i--NLH--fTG---D~HAItaA~N------------------------------------------ 153 (625)
T PTZ00386 123 AAGGGYSQVIPMEDF--NLH--GTG---DIHAITAANN------------------------------------------ 153 (625)
T ss_pred cCCCccccccchhhc--ccc--ccc---hHHHHHHHHH------------------------------------------
Confidence 4678896 9999999 888 689 7999999997
Q ss_pred cccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHHHhhhhcCCCceecCcceecHHH
Q psy7967 134 CRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSNGLKFGVPVVVKGKREFSIIQ 213 (353)
Q Consensus 134 ~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~~gvP~vv~g~R~fs~~~ 213 (353)
+|+|.++..-+ |+..|+|.++|++ + ++|+|+||++|
T Consensus 154 -----------LlaA~iDn~i~--------------~~n~~~d~~l~~~-l------------------~~~~r~~~~~~ 189 (625)
T PTZ00386 154 -----------LLAAALDTRIF--------------HERTQSDAALYRR-L------------------TDELKKFTPIM 189 (625)
T ss_pred -----------HHHHHHHHHHh--------------hccccchhHHHhh-h------------------ccccccccHHH
Confidence 55677887433 6777788666653 2 37999999999
Q ss_pred HHhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCceeeeee-------------ecCCCCCCccccccccchhhhhHHHHH
Q psy7967 214 RRRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAAL 280 (353)
Q Consensus 214 ~rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~I~WkRv-------------glg~~~~G~~RetgFdITvASEIMAIL 280 (353)
+|||+||||+|.+|++||||||+.|++|+|||++|+|+|| |+|++.+|++|||+|||||||||||||
T Consensus 190 ~~rl~~lgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~vGlG~~~~G~~Re~gFdITvASEiMAIl 269 (625)
T PTZ00386 190 LKRLEKLGISKTDPKQLTEEERVRFARLDIDPDTISWRRVTDVNDRMLREITIGQGKEEKGITRKTGFDISVASEVMAIL 269 (625)
T ss_pred HHHHHhhccCcCCccccCHHHhhhhhhcCcCcceeEEEeeccccchhhhceeeCcCCCCCCCcccCCceeEHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 799999999999999999999999999
Q ss_pred HhcCCHHHHHHHhcCeEEeecCCCCceeeccccccccCcceEEeecc
Q psy7967 281 ALSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVCEN 327 (353)
Q Consensus 281 cLA~dl~DLk~RLgrIvVg~t~dg~PVta~DL~a~~~GAm~a~~~~~ 327 (353)
|||+|++|||+|||||||||++||+|||++||++ .|||.+.+.+.
T Consensus 270 ~La~dl~Dlr~Rlg~ivva~~~~g~pVta~DL~~--~GAmt~LLkDA 314 (625)
T PTZ00386 270 ALATDLADMRQRLGAIVVAKSKSGEPVTAEDLGC--AGAMTVLMKDT 314 (625)
T ss_pred HHhCCHHHHHHHHhceeeeecCCCCceeHHHcCc--hHHHHHHHHhh
Confidence 9999999999999999999999999999999999 99998776654
No 12
>KOG4230|consensus
Probab=100.00 E-value=9.1e-49 Score=399.88 Aligned_cols=178 Identities=52% Similarity=0.720 Sum_probs=163.0
Q ss_pred ccchhh-hhhhhccCCceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCCeEEeeccccccccccccccccc
Q psy7967 56 LTGAMA-VLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVTEAGFGSDIGMEKFFNIKC 134 (353)
Q Consensus 56 ~~Ga~~-vll~da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~~vvTeAGfg~dlg~EkF~nik~ 134 (353)
++|||+ +||||+| ||| |+| |||++.+|||
T Consensus 420 agggysq~ipmdef--nlh--ltg---dihaitaann------------------------------------------- 449 (935)
T KOG4230|consen 420 AGGGYSQVIPMDEF--NLH--LTG---DIHAITAANN------------------------------------------- 449 (935)
T ss_pred CCCccceeeehhhc--ccc--ccc---chhhhhhhhH-------------------------------------------
Confidence 567886 9999998 887 689 7999999997
Q ss_pred ccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHHHhhhhcCCCceecCcceecHHHH
Q psy7967 135 RTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSNGLKFGVPVVVKGKREFSIIQR 214 (353)
Q Consensus 135 r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~~gvP~vv~g~R~fs~~~~ 214 (353)
+|+|+|++ || |||.+|+|.++|+ +.|| +++|+|+|+++|.
T Consensus 450 ----------llaaaidt-rm-------------fhe~tq~daal~k---------------rlvp-~kng~r~f~~~m~ 489 (935)
T KOG4230|consen 450 ----------LLAAAIDT-RM-------------FHENTQSDAALYK---------------RLVP-VKNGKRKFTPSMI 489 (935)
T ss_pred ----------HHHHHHHH-HH-------------HhhcccchHHHHH---------------hhcc-ccCCeeecCHHHH
Confidence 67789998 44 4899999887765 3578 4999999999999
Q ss_pred HhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCceeeeee-------------ecCCCCCCccccccccchhhhhHHHHHH
Q psy7967 215 RRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALA 281 (353)
Q Consensus 215 rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~I~WkRv-------------glg~~~~G~~RetgFdITvASEIMAILc 281 (353)
|||+||||+|+||++||+||+.+|.+|||||++|+|+|| |+..+++|++|.++||||||||+||||+
T Consensus 490 rrlkrl~i~k~dp~~lt~ee~~~farlnidpdtit~~rvldvndrflr~itig~a~tekg~tr~t~fdisvase~maila 569 (935)
T KOG4230|consen 490 RRLKRLGIEKTDPEDLTPEEIKKFARLNIDPDTITINRVLDVNDRFLRQITIGQAPTEKGHTRTTGFDISVASECMAILA 569 (935)
T ss_pred HHHHHhccccCCcccCCHHHHHHhHcccCCCCeeEEEEEeccchhhhhheecccCccccCcccccccceehHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6888999999999999999999999999
Q ss_pred hcCCHHHHHHHhcCeEEeecCCCCceeeccccccccCcceEEee
Q psy7967 282 LSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVC 325 (353)
Q Consensus 282 LA~dl~DLk~RLgrIvVg~t~dg~PVta~DL~a~~~GAm~a~~~ 325 (353)
||+||+|||+||||||||.+++|+|||++||+| .||.++.+.
T Consensus 570 ls~dl~dm~erlgrmvva~dk~g~pvtaedlgv--~galtvllk 611 (935)
T KOG4230|consen 570 LSKDLNDMKERLGRMVVAADKYGEPVTAEDLGV--SGALTVLLK 611 (935)
T ss_pred HhccHHHHHHHhhcEEEeecCCCCcccHHhcCc--chhHHHHHH
Confidence 999999999999999999999999999999999 898765443
No 13
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=1.6e-39 Score=330.67 Aligned_cols=88 Identities=36% Similarity=0.595 Sum_probs=84.3
Q ss_pred hhcCCCCCCceeeeee-------------ecCCCCCCccccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEEeecCCC
Q psy7967 238 FVRLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMVAEDKEG 304 (353)
Q Consensus 238 ~n~L~IDp~~I~WkRv-------------glg~~~~G~~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvVg~t~dg 304 (353)
||+|+|||++|+|+|| |+|++.+|+||||+||||||||||||||||+|++|||+||||||||||+||
T Consensus 173 ~~~L~IDp~~I~w~RvlD~NDR~LR~I~vGlG~~~~G~~Re~gFdITvASEiMAIlcLa~~l~Dlk~Rlg~ivva~~~~g 252 (587)
T PRK13507 173 LKRLDIDPTRVEMGWIIDFCAQALRNIIIGIGGKTDGYMMQSGFGIAVSSEVMAILSVATDLKDLRERIGKIVVAYDKNG 252 (587)
T ss_pred ccccCCCcceeeEeecccccchhhhceeeCcCCCCCCccccCCceeeHHHHHHHHHHHcCCHHHHHHHHhcEEEEEcCCC
Confidence 7899999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred CceeeccccccccCcceEEeecc
Q psy7967 305 RPVTLDDLAAKQAGAHDAVVCEN 327 (353)
Q Consensus 305 ~PVta~DL~a~~~GAm~a~~~~~ 327 (353)
+|||++||++ .|||.+.+.+.
T Consensus 253 ~PVta~DL~~--~GAmt~LLkDA 273 (587)
T PRK13507 253 KPVTTADLEV--DGAMTAWMVRA 273 (587)
T ss_pred CeeeHHhccc--hHhHHHHHHhh
Confidence 9999999999 99998776653
No 14
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=100.00 E-value=4.2e-39 Score=325.18 Aligned_cols=94 Identities=47% Similarity=0.754 Sum_probs=89.5
Q ss_pred HHHHhhhhcCCCCCCceeeeee-------------ecCCCCCCccccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEE
Q psy7967 232 PEEITKFVRLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMV 298 (353)
Q Consensus 232 ~e~i~~~n~L~IDp~~I~WkRv-------------glg~~~~G~~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvV 298 (353)
++||||+|+|+|||++|+|+|| |+|++.+|+||||+||||||||||||||||+|++|||+||+||||
T Consensus 129 Dn~i~~gn~l~iDp~~I~w~Rv~D~NDR~LR~iviglGg~~~G~~re~gFdITvASEiMAIlcLa~~l~DLk~Rl~~ivv 208 (524)
T cd00477 129 DNHIHHGNRLDIDPRRITWKRVLDVNDRALRKIVIGLGGKENGVPRETGFDITVASEIMAILCLATDLEDLKERLGRIVV 208 (524)
T ss_pred HHHHhcccccCCCcceeEEEecccccchhhhceEeccCCCCCCccccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEE
Confidence 4789999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred eecCCCCceeeccccccccCcceEEeecc
Q psy7967 299 AEDKEGRPVTLDDLAAKQAGAHDAVVCEN 327 (353)
Q Consensus 299 g~t~dg~PVta~DL~a~~~GAm~a~~~~~ 327 (353)
|||+||+|||++||++ .|||.+.+.+.
T Consensus 209 ~~~~~g~PVta~DL~~--~GAmt~LLkdA 235 (524)
T cd00477 209 AYSKDGEPVTAEDLGV--AGAMAVLLKDA 235 (524)
T ss_pred EEcCCCCcEeHHHcCc--hHhHHHHHHhh
Confidence 9999999999999999 99998776653
No 15
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=1.7e-38 Score=323.33 Aligned_cols=92 Identities=39% Similarity=0.708 Sum_probs=87.7
Q ss_pred HHhhhhcCCCCCCceeeeee-------------ecCCCCCCccccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEEee
Q psy7967 234 EITKFVRLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMVAE 300 (353)
Q Consensus 234 ~i~~~n~L~IDp~~I~WkRv-------------glg~~~~G~~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvVg~ 300 (353)
|++.||+|+|||++|+|+|| |+|++.||+||||+||||||||||||||||+|++|||+|||||||||
T Consensus 161 ~~~~~~~l~IDp~~I~w~Rv~DmNDR~LR~I~vglg~~~~G~~Re~gFdITvASEiMAIlcLa~dl~Dlk~Rl~~ivv~~ 240 (578)
T PRK13506 161 AQSGLPALDIDPEQILWKRVVDHNDRALRMITVGLGENGNGPEREDGFDITAASELMAILALSRDLKDMRQRIGRLVLAY 240 (578)
T ss_pred hhccccccCcCcCeeEEeecccccchhhhceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHhhcEEEEE
Confidence 68889999999999999999 79999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeccccccccCcceEEeecc
Q psy7967 301 DKEGRPVTLDDLAAKQAGAHDAVVCEN 327 (353)
Q Consensus 301 t~dg~PVta~DL~a~~~GAm~a~~~~~ 327 (353)
|+||+|||++||++ .|||.+.+.+.
T Consensus 241 ~~~g~pVta~DL~~--~GAm~~LLkDA 265 (578)
T PRK13506 241 NLQGQPITAEDLGV--AGAMTVIMKDA 265 (578)
T ss_pred cCCCCceeHHHccc--hHhHHHHHHHh
Confidence 99999999999999 99998776653
No 16
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=1.6e-38 Score=323.34 Aligned_cols=94 Identities=39% Similarity=0.673 Sum_probs=89.5
Q ss_pred HHHHhhhhcCCCCCCceeeeee-------------ecCCCCCCccccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEE
Q psy7967 232 PEEITKFVRLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMV 298 (353)
Q Consensus 232 ~e~i~~~n~L~IDp~~I~WkRv-------------glg~~~~G~~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvV 298 (353)
++||||+|+|+|||++|+|+|| |+|++.+|+||||+||||||||||||||||+|++|||+||+||||
T Consensus 146 dn~i~~gn~l~id~~~i~w~Rv~D~NDR~LR~i~iglg~~~~G~~re~gFdIT~ASEiMAilcLa~~l~Dl~~Rl~~ivv 225 (557)
T PRK13505 146 DNHIHQGNELGIDPRRITWKRVLDMNDRALRNIVVGLGGPANGVPREDGFDITVASEIMAILCLATDLKDLKERLGRIVV 225 (557)
T ss_pred HHHHhccCccCCCcceeEEEecccccchhhhceEeccCCCCCCCcccCCceeeHHHHHHHHHHHhCCHHHHHHHHhCEEE
Confidence 4789999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred eecCCCCceeeccccccccCcceEEeecc
Q psy7967 299 AEDKEGRPVTLDDLAAKQAGAHDAVVCEN 327 (353)
Q Consensus 299 g~t~dg~PVta~DL~a~~~GAm~a~~~~~ 327 (353)
||++||+|||++||++ .|||.+.+.+.
T Consensus 226 ~~~~~~~pvt~~dl~~--~GAm~~lLkdA 252 (557)
T PRK13505 226 GYTYDGKPVTVKDLKV--EGAMALLLKDA 252 (557)
T ss_pred EEcCCCCceeHHHcCc--hHHHHHHHHhh
Confidence 9999999999999999 99998776653
No 17
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.6e-38 Score=314.74 Aligned_cols=93 Identities=43% Similarity=0.708 Sum_probs=88.3
Q ss_pred HHHHhhhhcCCCCCCceeeeee-------------ecCCCCCCccccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEE
Q psy7967 232 PEEITKFVRLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMV 298 (353)
Q Consensus 232 ~e~i~~~n~L~IDp~~I~WkRv-------------glg~~~~G~~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvV 298 (353)
++||||+|+|+|||+||+|||| |++++.+|+|||||||||||||+|||||||+|+.|||+||+||||
T Consensus 143 dnhi~~gn~l~ID~~rI~wkRv~DmNDRaLR~I~vglg~~~~G~~RedgFdITvASEiMAIlcLa~dlkDlk~Rl~~ivi 222 (554)
T COG2759 143 DNHIYHGNELGIDPRRITWKRVVDMNDRALRSIVVGLGGPENGVPREDGFDITVASEIMAILCLATDLKDLKERLGRIVI 222 (554)
T ss_pred HhhhhcCcccCcCcceEEEEeeeccchhhhhheeeccCCccCCcccCCCceeehHHHHHHHHHHhhhHHHHHHHHhheEE
Confidence 3689999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred eecCCCCceeeccccccccCcceEEeec
Q psy7967 299 AEDKEGRPVTLDDLAAKQAGAHDAVVCE 326 (353)
Q Consensus 299 g~t~dg~PVta~DL~a~~~GAm~a~~~~ 326 (353)
||++|++|||++||++ .|||.+.+.+
T Consensus 223 ay~~~~~PV~~~Dl~~--~GAma~lLkD 248 (554)
T COG2759 223 AYDYDGKPVTAGDLKV--EGAMAALLKD 248 (554)
T ss_pred EEecCCCceeeecccc--chHHHHHHHh
Confidence 9999999999999999 8999766554
No 18
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=100.00 E-value=1.5e-38 Score=323.38 Aligned_cols=94 Identities=47% Similarity=0.741 Sum_probs=77.4
Q ss_pred HHHHhhhhcCCCCCCceeeeee-------------ecCCCCCCccccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEE
Q psy7967 232 PEEITKFVRLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMV 298 (353)
Q Consensus 232 ~e~i~~~n~L~IDp~~I~WkRv-------------glg~~~~G~~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvV 298 (353)
++||||+|+|+|||++|+|+|| |+|++.+|+|||++||||||||||||||||+|++|||+|||||||
T Consensus 145 dn~i~~gn~l~iDp~~I~w~Rv~D~NDR~LR~i~iglg~~~~G~~r~~~FdIT~ASEiMAilcLa~~l~Dlk~Rl~~ivv 224 (557)
T PF01268_consen 145 DNHIYHGNELNIDPRRITWKRVLDMNDRALRNIVIGLGGKANGVPREDGFDITVASEIMAILCLATDLEDLKERLGRIVV 224 (557)
T ss_dssp HHHHHTTSTT-EECCCE---EEESS--GGGSSEEESTSSCCC---EEE-EEEGGGSHHHHHHHC-SSHHHHHHHHHC-EE
T ss_pred HHHHhccccCCCCcceeeeeeeccccchhhhheeeCCCCCCCCCcccCceeeEechhhheehhhhcCHHHHHHHHhCEEE
Confidence 3689999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred eecCCCCceeeccccccccCcceEEeecc
Q psy7967 299 AEDKEGRPVTLDDLAAKQAGAHDAVVCEN 327 (353)
Q Consensus 299 g~t~dg~PVta~DL~a~~~GAm~a~~~~~ 327 (353)
|||+||+|||++||++ .|||.+.+.+.
T Consensus 225 ~~~~~~~pvta~dl~~--~Gam~~LLkdA 251 (557)
T PF01268_consen 225 AYTKDGKPVTAEDLGA--AGAMTALLKDA 251 (557)
T ss_dssp EEETTS-EEECHHHT---HHHHHHHTTTT
T ss_pred EEcCCCCeEEHHHcCC--cHhHHHHHHhh
Confidence 9999999999999999 99998776654
No 19
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.58 E-value=0.024 Score=53.77 Aligned_cols=130 Identities=28% Similarity=0.332 Sum_probs=75.4
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhcCCcee---eEeeCCCCCCcccccCchhhhhhhhccchhhhhhhhccCCceeeeecC
Q psy7967 2 TPTPLGEGKSTTTIGLAQALAAHKHKNTF---ACVRQPSQGPTFGIKGSHMALLLSGLTGAMAVLLKDAVQPNLMQTLEG 78 (353)
Q Consensus 2 tPTP~GEGKsTttiGL~qal~~~lgk~~~---~~lRqPS~GP~FGiKGGama~ll~~~~Ga~~vll~da~~pNL~qtleg 78 (353)
+-.+-|+||||++.-|+.+|. ..|+++. +-+|.||+-..||+.... ++. -.+.|-. +.|=.+.+.
T Consensus 63 ~S~kgGvGKStva~nLA~alA-~~G~rVlliDaD~~gps~~~~l~~~~~~-g~~-~~~~g~~-------~~~~~~~~~-- 130 (265)
T COG0489 63 TSGKGGVGKSTVAVNLAAALA-QLGKRVLLLDADLRGPSIPRMLGLENLP-GLT-ELLAGEA-------LEPVIQHDG-- 130 (265)
T ss_pred EeCCCCCcHHHHHHHHHHHHH-hcCCcEEEEeCcCCCCchHHHhCCCCCC-Ccc-cccCCCc-------cccceecCc--
Confidence 345679999999999999996 6899985 469999999999996632 111 0011110 111111100
Q ss_pred cceeeecccchhhhhcc-----hhHHHHHHHHhhccCCCeEEeecccccccccccccccccccCCCCCCeEEEEeehH
Q psy7967 79 TPVMVHAGPFANIAHGC-----SSVVADLIALKLVGAEGYVVTEAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVR 151 (353)
Q Consensus 79 ~p~~iH~gpfANiahg~-----~s~~ad~~al~l~g~~~~vvTeAGfg~dlg~EkF~nik~r~~g~~p~a~vlvAtir 151 (353)
.-.+|-+|+-...+=- ++-+...+.--..++.||||=++.=+... ..-+.....||.+|+|++-.
T Consensus 131 -~~~lsi~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~-------~d~~i~~~~~~g~viVt~p~ 200 (265)
T COG0489 131 -IKVLSILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGD-------ADATVLQRIPDGVVIVTTPG 200 (265)
T ss_pred -cceEEEEecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchH-------HHHHHHhccCCeEEEEeCCc
Confidence 0112323332211111 23444455555566689999888644322 22345667788899998755
No 20
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=95.49 E-value=0.0098 Score=50.59 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=28.5
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCC
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQ 38 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~ 38 (353)
||+|--|+||||++.||+++|.+ .|+++. ++.|.+
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~-~g~~V~--~~kP~~ 36 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKK-AGYSVG--YYKPVQ 36 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHH-CCCcEE--EEEeee
Confidence 78999999999999999999975 577763 455544
No 21
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.24 E-value=0.096 Score=46.60 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=32.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiKGG 47 (353)
.-|.||||+++.|+.+|. ..|+++.+. ..++++.-.||++..
T Consensus 9 KGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~~~~~~~~g~~~~ 53 (251)
T TIGR01969 9 KGGTGKTTITANLGVALA-KLGKKVLALDADITMANLELILGMEDK 53 (251)
T ss_pred CCCCcHHHHHHHHHHHHH-HCCCeEEEEeCCCCCccceeEeCCCCC
Confidence 459999999999999997 578887553 345677778888764
No 22
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=95.23 E-value=0.011 Score=54.48 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=37.1
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcCCcee---eEeeCCCCCCcccccCc
Q psy7967 3 PTPLGEGKSTTTIGLAQALAAHKHKNTF---ACVRQPSQGPTFGIKGS 47 (353)
Q Consensus 3 PTP~GEGKsTttiGL~qal~~~lgk~~~---~~lRqPS~GP~FGiKGG 47 (353)
=+.-||||||++..|+.+|+ ..|+++. +.+|.|++...||.+..
T Consensus 110 s~~~g~Gktt~a~nLA~~la-~~g~~VllID~D~~~~~~~~~~~~~~~ 156 (274)
T TIGR03029 110 SAKSGEGCSYIAANLAIVFS-QLGEKTLLIDANLRDPVQHRNFKLSEQ 156 (274)
T ss_pred CCCCCCCHHHHHHHHHHHHH-hcCCeEEEEeCCCCCccHHHhcCCCCC
Confidence 34579999999999999996 5799986 56899999888987654
No 23
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=94.93 E-value=0.017 Score=51.58 Aligned_cols=43 Identities=42% Similarity=0.538 Sum_probs=35.6
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCcee---eEeeCCCCCCcccccC
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTF---ACVRQPSQGPTFGIKG 46 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~---~~lRqPS~GP~FGiKG 46 (353)
..-|+||||++..|+++|....|+++. +..+.|++...||++.
T Consensus 43 ~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~ 88 (207)
T TIGR03018 43 SLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEA 88 (207)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCC
Confidence 356999999999999999754589875 4578899999998864
No 24
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.05 E-value=0.063 Score=46.05 Aligned_cols=36 Identities=33% Similarity=0.256 Sum_probs=27.3
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCc
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPT 41 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~ 41 (353)
..-|+||||+++.|+.+|. ..|+++.+.=..| |||.
T Consensus 7 ~kgG~GKTt~a~~LA~~la-~~g~~vllvD~D~-q~~~ 42 (169)
T cd02037 7 GKGGVGKSTVAVNLALALA-KLGYKVGLLDADI-YGPS 42 (169)
T ss_pred CCCcCChhHHHHHHHHHHH-HcCCcEEEEeCCC-CCCC
Confidence 3469999999999999996 5799887653443 4543
No 25
>PRK11519 tyrosine kinase; Provisional
Probab=93.58 E-value=0.19 Score=53.68 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=36.9
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhcCCceee---EeeCCCCCCcccccCc
Q psy7967 2 TPTPLGEGKSTTTIGLAQALAAHKHKNTFA---CVRQPSQGPTFGIKGS 47 (353)
Q Consensus 2 tPTP~GEGKsTttiGL~qal~~~lgk~~~~---~lRqPS~GP~FGiKGG 47 (353)
|-+--||||||++..|+.+|+ ..|+++.+ .+|.|++.-.||+...
T Consensus 532 ts~~~geGKTt~a~nLA~~la-~~g~rvLlID~Dlr~~~~~~~~~~~~~ 579 (719)
T PRK11519 532 TGVSPSIGKTFVCANLAAVIS-QTNKRVLLIDCDMRKGYTHELLGTNNV 579 (719)
T ss_pred ECCCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCCCCCCcHHHHhCCCCC
Confidence 334569999999999999996 57999854 4899999888888753
No 26
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=93.55 E-value=0.069 Score=44.86 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccc
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGI 44 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGi 44 (353)
+.-|+||||++..|+.+|. ..|+++.+. .++|++...||.
T Consensus 7 ~kgG~GKtt~a~~la~~l~-~~g~~vllvD~D~~~~~~~~~~~~ 49 (179)
T cd02036 7 GKGGVGKTTTTANLGTALA-QLGYKVVLIDADLGLRNLDLILGL 49 (179)
T ss_pred CCCCCCHHHHHHHHHHHHH-hCCCeEEEEeCCCCCCCchhhccc
Confidence 3569999999999999996 568887654 455555544443
No 27
>CHL00175 minD septum-site determining protein; Validated
Probab=93.15 E-value=0.078 Score=49.05 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=33.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiKGG 47 (353)
.=|.||||++..|+.+|+ ..|+++.+- .+++++.-.||++..
T Consensus 24 KGGvGKTt~a~nLA~~La-~~g~~vlliD~D~~~~~l~~~lg~~~~ 68 (281)
T CHL00175 24 KGGVGKTTTTANLGMSIA-RLGYRVALIDADIGLRNLDLLLGLENR 68 (281)
T ss_pred CCCCcHHHHHHHHHHHHH-hCCCeEEEEeCCCCCCChhhhcCCCCC
Confidence 459999999999999997 579887654 455778888888753
No 28
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=92.83 E-value=0.057 Score=47.57 Aligned_cols=42 Identities=33% Similarity=0.386 Sum_probs=35.1
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCcee---eEeeCCCCCCcccccC
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTF---ACVRQPSQGPTFGIKG 46 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~---~~lRqPS~GP~FGiKG 46 (353)
+.-|+||||++..|+.+|. ..|+++. +.++.|++.-.|+.+.
T Consensus 25 ~kgG~GKTt~a~~LA~~la-~~G~rVllID~D~~~~~l~~~~~~~~ 69 (204)
T TIGR01007 25 VKPGEGKSTTSANIAVAFA-QAGYKTLLIDGDMRNSVMSGTFKSQN 69 (204)
T ss_pred CCCCCCHHHHHHHHHHHHH-hCCCeEEEEeCCCCChhHHHHhCCCC
Confidence 4569999999999999997 4799876 3478999888888876
No 29
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=92.81 E-value=0.087 Score=44.70 Aligned_cols=32 Identities=41% Similarity=0.399 Sum_probs=24.6
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
+.=|.||||+|..|+++|.. .|+++.+.=-.|
T Consensus 6 ~kGG~GKTt~a~~la~~la~-~g~~VlliD~D~ 37 (195)
T PF01656_consen 6 GKGGVGKTTIAANLAQALAR-KGKKVLLIDLDP 37 (195)
T ss_dssp SSTTSSHHHHHHHHHHHHHH-TTS-EEEEEEST
T ss_pred CCCCccHHHHHHHHHhcccc-ccccccccccCc
Confidence 34599999999999999975 688886654444
No 30
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=92.80 E-value=0.1 Score=51.49 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=35.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiKGG 47 (353)
.-|+||||++.-|+++|. ..|+++.+. +|.||+.-.||++.-
T Consensus 39 kgG~GKSt~a~nLa~~la-~~g~rVllid~D~~~~~~~~~~g~~~~ 83 (329)
T cd02033 39 KGGIGKSFTLANLSYMMA-QQGKRVLLIGCDPKSDTTSLLFGGKAC 83 (329)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCcEEEEEeeecccccchhccccCC
Confidence 349999999999999997 469988643 899999999998754
No 31
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.75 E-value=0.064 Score=46.37 Aligned_cols=30 Identities=43% Similarity=0.713 Sum_probs=20.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGI 44 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGi 44 (353)
|+|.||||.+.|++++|+ +.++-.=|||-+
T Consensus 23 dLGaGKTtf~r~l~~~lg----------~~~~V~SPTF~l 52 (123)
T PF02367_consen 23 DLGAGKTTFVRGLARALG----------IDEEVTSPTFSL 52 (123)
T ss_dssp STTSSHHHHHHHHHHHTT------------S----TTTTS
T ss_pred CCCCCHHHHHHHHHHHcC----------CCCCcCCCCeEE
Confidence 789999999999999985 223455577754
No 32
>PRK10037 cell division protein; Provisional
Probab=92.61 E-value=0.083 Score=48.41 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=32.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE-e-eCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC-V-RQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~-l-RqPS~GP~FGiKGG 47 (353)
.=|.||||+++.|+.+|. ..||++.+. + .|.++.-.||+...
T Consensus 10 KGGvGKTT~a~nLA~~La-~~G~rVLlID~D~q~~~s~~~g~~~~ 53 (250)
T PRK10037 10 RGGVGTTSITAALAWSLQ-MLGENVLVIDACPDNLLRLSFNVDFT 53 (250)
T ss_pred CCCccHHHHHHHHHHHHH-hcCCcEEEEeCChhhhHHHHhCCCcc
Confidence 359999999999999997 579987643 2 46666777887643
No 33
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.29 E-value=0.11 Score=47.23 Aligned_cols=27 Identities=44% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
.=|.||||+|+.|+.+|. ..|+++.+.
T Consensus 9 KGGvGKTT~~~nLA~~La-~~G~kVlli 35 (270)
T cd02040 9 KGGIGKSTTTQNLSAALA-EMGKKVMIV 35 (270)
T ss_pred CCcCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 459999999999999997 479887654
No 34
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=92.22 E-value=0.1 Score=47.93 Aligned_cols=32 Identities=34% Similarity=0.341 Sum_probs=25.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
.=|.||||+++-|+.+|. +.|+++.+.=-.|-
T Consensus 10 KGGVGKTT~~~nLA~~la-~~G~kVLliD~Dpq 41 (270)
T PRK13185 10 KGGIGKSTTSSNLSAAFA-KLGKKVLQIGCDPK 41 (270)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCeEEEEeccCC
Confidence 459999999999999997 57998765534553
No 35
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.08 E-value=0.11 Score=48.21 Aligned_cols=30 Identities=40% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
=|.||||+++.|+.+|. ..|+++.+.==.|
T Consensus 10 GGVGKTT~a~nLA~~La-~~G~rVLliD~Dp 39 (279)
T PRK13230 10 GGIGKSTTVCNIAAALA-ESGKKVLVVGCDP 39 (279)
T ss_pred CCCcHHHHHHHHHHHHH-hCCCEEEEEeeCC
Confidence 48999999999999996 6899876543333
No 36
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=92.03 E-value=0.14 Score=45.72 Aligned_cols=42 Identities=29% Similarity=0.300 Sum_probs=31.8
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccccC
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIKG 46 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiKG 46 (353)
+.=|+||||++..|+.+|. ..|+++.+. .++|++.-.||++.
T Consensus 9 ~kGGvGKTt~a~~lA~~la-~~g~~vlliD~D~~~~~~~~~lg~~~ 53 (261)
T TIGR01968 9 GKGGVGKTTTTANLGTALA-RLGKKVVLIDADIGLRNLDLLLGLEN 53 (261)
T ss_pred CCCCccHHHHHHHHHHHHH-HcCCeEEEEECCCCCCCeeEEeCCCC
Confidence 3459999999999999997 568887654 34466666777753
No 37
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=91.97 E-value=0.11 Score=47.63 Aligned_cols=38 Identities=34% Similarity=0.390 Sum_probs=26.4
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccc
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGI 44 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGi 44 (353)
=|.||||||+-|+.+|. ..|+++.+.==.|...=++++
T Consensus 9 GGVGKTT~~~nLA~~La-~~g~rVLliD~D~q~~~~~~l 46 (268)
T TIGR01281 9 GGIGKSTTSSNLSVAFA-KLGKRVLQIGCDPKHDSTFTL 46 (268)
T ss_pred CcCcHHHHHHHHHHHHH-hCCCeEEEEecCcccccccee
Confidence 38999999999999997 579987543234533333333
No 38
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=91.80 E-value=0.12 Score=47.96 Aligned_cols=39 Identities=31% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGI 44 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGi 44 (353)
.=|.|||||++.|+.+|. ..|+++.+.==.|-.--+..+
T Consensus 9 KGGVGKTT~~~nLA~~La-~~G~rVLlID~Dpq~~~t~~l 47 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLA-EMGKKVMVVGCDPKADSTRLL 47 (274)
T ss_pred CCCccHHHHHHHHHHHHH-HCCCcEEEEecCCcccccccc
Confidence 358999999999999996 579987654344544444433
No 39
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.14 E-value=0.16 Score=45.36 Aligned_cols=26 Identities=38% Similarity=0.337 Sum_probs=21.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
.-|+||||+++.|+.+|. ..|+++.+
T Consensus 10 KGGvGKTt~a~nla~~la-~~g~~Vll 35 (246)
T TIGR03371 10 KGGVGKTTLTANLASALK-LLGEPVLA 35 (246)
T ss_pred CCCccHHHHHHHHHHHHH-hCCCcEEE
Confidence 359999999999999997 46888654
No 40
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=91.04 E-value=0.16 Score=46.87 Aligned_cols=25 Identities=48% Similarity=0.450 Sum_probs=21.2
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
=|.||||+|+.|+.+|. ..|+++.+
T Consensus 9 GGVGKTT~a~nLA~~La-~~G~~Vll 33 (275)
T TIGR01287 9 GGIGKSTTTQNIAAALA-EMGKKVMI 33 (275)
T ss_pred CcCcHHHHHHHHHHHHH-HCCCeEEE
Confidence 48999999999999997 56887644
No 41
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=90.96 E-value=0.28 Score=43.84 Aligned_cols=37 Identities=35% Similarity=0.323 Sum_probs=26.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTF 42 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~F 42 (353)
.=|+||||+|.-|+.+|. ..||++.+.=-.|-..-++
T Consensus 8 KGGvGKTt~~~nLA~~la-~~G~rvLliD~D~q~~~~~ 44 (212)
T cd02117 8 KGGIGKSTTSQNLSAALA-EMGKKVLQVGCDPKADSTR 44 (212)
T ss_pred CCcCcHHHHHHHHHHHHH-HCCCcEEEEeCCCCCCccc
Confidence 459999999999999997 5799875543444433343
No 42
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=90.74 E-value=0.19 Score=46.44 Aligned_cols=27 Identities=44% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
.=|.|||||++-|+-+|..+.|+++.+
T Consensus 10 KGGVGKTT~a~nLA~~La~~~G~rvLl 36 (275)
T PRK13233 10 KGGIGKSTTTQNTAAAMAYFHDKKVFI 36 (275)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCeEEE
Confidence 458999999999999996435888543
No 43
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=90.67 E-value=0.29 Score=45.01 Aligned_cols=38 Identities=37% Similarity=0.454 Sum_probs=28.5
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccc
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGI 44 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGi 44 (353)
=|.||||+++-|+.+|. ..|+++.+.==.|...=++++
T Consensus 9 GGvGKTT~a~nLA~~la-~~G~rvlliD~Dpq~~~~~~l 46 (267)
T cd02032 9 GGIGKSTTSSNLSVALA-KRGKKVLQIGCDPKHDSTFTL 46 (267)
T ss_pred CCCCHHHHHHHHHHHHH-HCCCcEEEEecCCCCCcceec
Confidence 49999999999999996 579998765455644344444
No 44
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=90.60 E-value=0.14 Score=47.80 Aligned_cols=41 Identities=24% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe--eCCCCCCcccccC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV--RQPSQGPTFGIKG 46 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l--RqPS~GP~FGiKG 46 (353)
.-|+||||++..|++++. ..|+++.+.= -+||++-+||++-
T Consensus 8 kgG~GKtt~a~~la~~~a-~~g~~vLlvd~D~~~sl~~~~~~~~ 50 (254)
T cd00550 8 KGGVGKTTISAATAVRLA-EQGKKVLLVSTDPAHSLSDSFNQEF 50 (254)
T ss_pred CCCchHHHHHHHHHHHHH-HCCCCceEEeCCCcccHHHHhCCcc
Confidence 469999999999999997 5799875431 2479999999983
No 45
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=90.55 E-value=0.2 Score=48.05 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=27.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
.=|+|||||++-|+++|.. .|+++.+.==.|.++
T Consensus 8 KGGvGKTT~a~nLA~~La~-~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 8 KGGSGKSFTTTNLSHMMAE-MGKRVLQLGCDPKHD 41 (296)
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCeEEEEEecCCCC
Confidence 4599999999999999975 799987765555443
No 46
>PRK11670 antiporter inner membrane protein; Provisional
Probab=90.46 E-value=0.25 Score=49.14 Aligned_cols=40 Identities=33% Similarity=0.324 Sum_probs=32.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee---EeeCCCCCCccccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA---CVRQPSQGPTFGIK 45 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~---~lRqPS~GP~FGiK 45 (353)
.=|+|||||++-|+.+|. ..|+++.+ -++-||.--.||+.
T Consensus 116 KGGVGKTT~avNLA~aLA-~~G~rVlLID~D~qgps~~~~lg~~ 158 (369)
T PRK11670 116 KGGVGKSSTAVNLALALA-AEGAKVGILDADIYGPSIPTMLGAE 158 (369)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCcEEEEeCCCCCCCcchhcCCc
Confidence 359999999999999996 57999854 37888876667764
No 47
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=90.44 E-value=0.12 Score=50.46 Aligned_cols=39 Identities=38% Similarity=0.345 Sum_probs=28.1
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceee---EeeCCCCCCccccc
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFA---CVRQPSQGPTFGIK 45 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~---~lRqPS~GP~FGiK 45 (353)
=|.||||||+=|+-||. +.|+++-+ -+||||+.=.|+-+
T Consensus 10 GGvGKSTva~~lA~aLa-~~G~kVg~lD~Di~q~S~~r~l~nr 51 (261)
T PF09140_consen 10 GGVGKSTVAVNLAVALA-RMGKKVGLLDLDIRQPSLPRYLENR 51 (261)
T ss_dssp TTTTHHHHHHHHHHHHH-CTT--EEEEE--TTT-HHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH-HCCCeEEEEecCCCCCCHHHHHhcc
Confidence 48999999999999996 68998753 47999986655543
No 48
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=90.37 E-value=0.28 Score=36.08 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=20.7
Q ss_pred CCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 7 GEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 7 GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
|+||||++..|++.|.+ .|.++ .++.
T Consensus 9 G~Gktt~~~~l~~~l~~-~g~~v-~~~~ 34 (99)
T cd01983 9 GVGKTTLAANLAAALAK-RGKRV-LLID 34 (99)
T ss_pred CCCHHHHHHHHHHHHHH-CCCeE-EEEC
Confidence 99999999999999974 56654 4444
No 49
>PHA02518 ParA-like protein; Provisional
Probab=90.23 E-value=0.23 Score=43.10 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.3
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
=|.||||+++.|+-+|. ..|+++.+
T Consensus 10 GGvGKTT~a~~la~~la-~~g~~vll 34 (211)
T PHA02518 10 GGAGKTTVATNLASWLH-ADGHKVLL 34 (211)
T ss_pred CCCCHHHHHHHHHHHHH-hCCCeEEE
Confidence 48999999999999997 56888753
No 50
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=90.22 E-value=0.21 Score=42.88 Aligned_cols=38 Identities=32% Similarity=0.253 Sum_probs=29.6
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCcee---eEeeCCCCCCcccccC
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTF---ACVRQPSQGPTFGIKG 46 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~---~~lRqPS~GP~FGiKG 46 (353)
..-|+||||++.-|+.+| +++. +-+|.|++--.||++.
T Consensus 7 ~kgG~GKSt~a~nLA~~l-----~~vlliD~D~~~~~~~~~~~~~~ 47 (179)
T cd03110 7 GKGGTGKTTVTAALAALL-----KNVVLADCDVDAPNLHLFLKPEI 47 (179)
T ss_pred CCCCCCHHHHHHHHHHHH-----hCcEEEECCCCCCchhhhcCCCc
Confidence 346999999999999998 4443 3468899888888865
No 51
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=90.19 E-value=0.21 Score=44.62 Aligned_cols=29 Identities=34% Similarity=0.303 Sum_probs=25.1
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|+.|..++|||++|.||+++|. ..|+++.
T Consensus 4 I~~t~t~~GKT~vs~~L~~~l~-~~g~~v~ 32 (222)
T PRK00090 4 VTGTDTDVGKTVVTAALAQALR-EAGYSVA 32 (222)
T ss_pred EEeCCCCcCHHHHHHHHHHHHH-HcCCceE
Confidence 5789999999999999999996 4688763
No 52
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=89.98 E-value=0.22 Score=46.11 Aligned_cols=27 Identities=37% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
.=|.|||||++-|+-+|. ..|+++.+.
T Consensus 9 KGGVGKTT~a~nLA~~La-~~G~rVllv 35 (273)
T PRK13232 9 KGGIGKSTTTQNLTAALS-TMGNKILLV 35 (273)
T ss_pred CCCCcHHHHHHHHHHHHH-hhCCCeEEE
Confidence 458999999999999997 579998654
No 53
>PRK10646 ADP-binding protein; Provisional
Probab=89.89 E-value=0.18 Score=45.21 Aligned_cols=18 Identities=50% Similarity=0.696 Sum_probs=16.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
++|.||||.+.||+++|+
T Consensus 36 dLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 36 DLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 689999999999999985
No 54
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=89.44 E-value=0.47 Score=40.18 Aligned_cols=34 Identities=32% Similarity=0.367 Sum_probs=28.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
|-|.||||.+--|++.|.. .|.++ +.+++|+-.+
T Consensus 8 ~~GsGKtT~~~~L~~~l~~-~g~~v-~~~~~~~~~~ 41 (200)
T cd01672 8 IDGAGKTTLIELLAERLEA-RGYEV-VLTREPGGTP 41 (200)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCeE-EEEeCCCCCc
Confidence 6799999999999999974 57775 7899998654
No 55
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.12 E-value=0.24 Score=52.63 Aligned_cols=42 Identities=17% Similarity=0.064 Sum_probs=35.2
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceee---EeeCCCCCCcccccC
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFA---CVRQPSQGPTFGIKG 46 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~---~lRqPS~GP~FGiKG 46 (353)
+--||||||++..|+.+|. ..|+++.+ -+|+||+.-.||+..
T Consensus 554 ~~~G~GKTt~a~nLA~~lA-~~g~rvLlID~D~~~~~l~~~~~~~~ 598 (754)
T TIGR01005 554 PRPVLGKSDIEANAAALIA-SGGKRALLIDADGRKAALSQILVARE 598 (754)
T ss_pred CCCCCChhHHHHHHHHHHH-hCCCeEEEEeCCCCchhHHHHhCCcc
Confidence 4569999999999999997 57998764 379999988898753
No 56
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=89.08 E-value=0.3 Score=42.35 Aligned_cols=34 Identities=32% Similarity=0.322 Sum_probs=29.6
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCc
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPT 41 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~ 41 (353)
-|+||||.+--|.++|.. .|.+ +...++|+-.|+
T Consensus 5 DGsGKtT~~~~L~~~l~~-~~~~-~~~~~~~~~~~~ 38 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEALKE-KGYK-VIITFPPGSTPI 38 (186)
T ss_dssp TTSSHHHHHHHHHHHHHH-TTEE-EEEEESSTSSHH
T ss_pred CCCCHHHHHHHHHHHHHH-cCCc-ccccCCCCCChH
Confidence 599999999999999975 6888 888899987775
No 57
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=89.05 E-value=0.39 Score=45.74 Aligned_cols=39 Identities=23% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGI 44 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGi 44 (353)
.-|.|||||++-|+.+|. +.||++.+. .+.++....|+.
T Consensus 12 KGGvGKTt~~~nLa~~la-~~g~kVLliD~D~q~~~~~~~~~~ 53 (295)
T PRK13234 12 KGGIGKSTTSQNTLAALV-EMGQKILIVGCDPKADSTRLILNA 53 (295)
T ss_pred CCCccHHHHHHHHHHHHH-HCCCeEEEEecccccccccccccC
Confidence 459999999999999996 579998665 555665544443
No 58
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=88.82 E-value=0.24 Score=44.63 Aligned_cols=18 Identities=44% Similarity=0.709 Sum_probs=17.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
++|.||||.+.|++++|+
T Consensus 33 dLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 33 DLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCcCChHHHHHHHHHHcC
Confidence 689999999999999996
No 59
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=88.73 E-value=0.24 Score=43.56 Aligned_cols=32 Identities=34% Similarity=0.503 Sum_probs=25.6
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
|++|..+.|||+++.||+++|.+ .|.++ ...|
T Consensus 5 I~~t~t~vGKT~vslgL~~~l~~-~g~~v-~~~K 36 (199)
T PF13500_consen 5 ITGTDTGVGKTVVSLGLARALRR-RGIKV-GYFK 36 (199)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHH-TTSEE-EEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh-CCCce-EEEe
Confidence 57999999999999999999975 45554 3344
No 60
>PRK13976 thymidylate kinase; Provisional
Probab=88.57 E-value=0.39 Score=44.06 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=26.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
.-|+||||.+--|.+.|..+.|...+...|||+
T Consensus 8 iDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~ 40 (209)
T PRK13976 8 IDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG 40 (209)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC
Confidence 359999999999999998643544566789997
No 61
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=88.41 E-value=0.44 Score=47.74 Aligned_cols=40 Identities=20% Similarity=0.085 Sum_probs=31.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCccccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIK 45 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiK 45 (353)
.=|.||||+|+-|+++|. ..|+++.+. -.|.|+--.||++
T Consensus 115 KGGVGKTTta~nLA~~LA-~~G~rVLlIDl~DpQ~nlt~~~g~~ 157 (387)
T PHA02519 115 KGGVYKTSSAVHTAQWLA-LQGHRVLLIEGNDPQGTASMYHGYV 157 (387)
T ss_pred CCCCcHHHHHHHHHHHHH-hCCCcEEEEeCCCCCCCcccccCcC
Confidence 359999999999999996 579987543 4677777778775
No 62
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=88.24 E-value=0.21 Score=45.89 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=20.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV 33 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l 33 (353)
.=|.||||||+-|+.+|. ..| ++ +.+
T Consensus 10 KGGvGKTT~a~nLA~~La-~~G-rV-Lli 35 (264)
T PRK13231 10 KGGIGKSTTVSNMAAAYS-NDH-RV-LVI 35 (264)
T ss_pred CCCCcHHHHHHHHhcccC-CCC-EE-EEE
Confidence 359999999999999997 568 64 434
No 63
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=88.10 E-value=0.36 Score=48.46 Aligned_cols=39 Identities=36% Similarity=0.364 Sum_probs=28.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe--eCCCCCCcccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV--RQPSQGPTFGI 44 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l--RqPS~GP~FGi 44 (353)
.=|+|||||++-|+++|. ..|+++.+.= -|.|+--.||+
T Consensus 130 KGGvGKTTta~nLA~~LA-~~G~rVLlIDlDpQ~~lt~~~g~ 170 (405)
T PRK13869 130 KGGSGKTTTSAHLAQYLA-LQGYRVLAVDLDPQASLSALLGV 170 (405)
T ss_pred CCCCCHHHHHHHHHHHHH-hcCCceEEEcCCCCCCHHHHcCC
Confidence 359999999999999996 5798865431 45554445665
No 64
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=88.06 E-value=0.4 Score=47.90 Aligned_cols=40 Identities=25% Similarity=0.143 Sum_probs=30.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCccccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIK 45 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiK 45 (353)
.=|.||||+++-|+++|. ..|+++.+. -.|-|+-..||..
T Consensus 115 KGGVGKTT~a~nLA~~LA-~~G~rVLlID~~DpQ~nlt~~~g~~ 157 (388)
T PRK13705 115 KGGVYKTSVSVHLAQDLA-LKGLRVLLVEGNDPQGTASMYHGWV 157 (388)
T ss_pred CCCchHHHHHHHHHHHHH-hcCCCeEEEcCCCCCCchhhhcCcC
Confidence 359999999999999996 579998654 3566666667663
No 65
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=88.01 E-value=0.38 Score=45.99 Aligned_cols=30 Identities=37% Similarity=0.420 Sum_probs=23.8
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
=|.|||||++-|+.+|. ..|+++.+.==.|
T Consensus 9 GGVGKTTta~nLA~~La-~~G~rVLlID~Dp 38 (290)
T CHL00072 9 GGIGKSTTSCNISIALA-RRGKKVLQIGCDP 38 (290)
T ss_pred CCCcHHHHHHHHHHHHH-HCCCeEEEEeccC
Confidence 48999999999999997 5799875543333
No 66
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=87.71 E-value=0.22 Score=48.18 Aligned_cols=41 Identities=37% Similarity=0.400 Sum_probs=32.3
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCC--CCCCcccccCc
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQP--SQGPTFGIKGS 47 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqP--S~GP~FGiKGG 47 (353)
=|.||||++..++.++++ .|+++.++==.| |+|.+||.|-|
T Consensus 10 GGVGKTT~aaA~A~~~A~-~G~rtLlvS~Dpa~~L~d~l~~~~~ 52 (305)
T PF02374_consen 10 GGVGKTTVAAALALALAR-RGKRTLLVSTDPAHSLSDVLGQKLG 52 (305)
T ss_dssp TTSSHHHHHHHHHHHHHH-TTS-EEEEESSTTTHHHHHHTS--B
T ss_pred CCCCcHHHHHHHHHHHhh-CCCCeeEeecCCCccHHHHhCCcCC
Confidence 389999999999999975 699998876666 68889999866
No 67
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=87.51 E-value=0.41 Score=47.12 Aligned_cols=41 Identities=37% Similarity=0.354 Sum_probs=31.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE--eeCCCCCCcccccC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC--VRQPSQGPTFGIKG 46 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~--lRqPS~GP~FGiKG 46 (353)
.-|+||||+++-|+.+|.. .|+++.+. =-|+|+--.||...
T Consensus 113 KGGvGKTT~a~nLA~~La~-~G~rVLlID~DpQ~~ls~~~g~~~ 155 (387)
T TIGR03453 113 KGGSGKTTTAAHLAQYLAL-RGYRVLAIDLDPQASLSALFGYQP 155 (387)
T ss_pred CCCcCHHHHHHHHHHHHHh-cCCCEEEEecCCCCCHHHHcCCCc
Confidence 3599999999999999974 69886533 14777777787653
No 68
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=87.48 E-value=0.31 Score=52.17 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=35.7
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCcee---eEeeCCCCCCcccccC
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTF---ACVRQPSQGPTFGIKG 46 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~---~~lRqPS~GP~FGiKG 46 (353)
+--||||||++..|+.+|. ..|+++. +.+|.|++--.||++.
T Consensus 539 ~~~g~GKTtva~nLA~~la-~~G~rVLlID~D~r~~~l~~~~~~~~ 583 (726)
T PRK09841 539 ATPDSGKTFVSSTLAAVIA-QSDQKVLFIDADLRRGYSHNLFTVSN 583 (726)
T ss_pred CCCCCCHHHHHHHHHHHHH-hCCCeEEEEeCCCCCCcHHHHcCCCC
Confidence 4459999999999999996 6899987 4589999888888764
No 69
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=87.45 E-value=0.44 Score=43.44 Aligned_cols=42 Identities=31% Similarity=0.381 Sum_probs=27.9
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCCC--CCCcccccCc
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQPS--QGPTFGIKGS 47 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS--~GP~FGiKGG 47 (353)
=|.||||||+=|+.+|..+.|+++.+-==.|. +==.||.+..
T Consensus 12 GGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~ 55 (259)
T COG1192 12 GGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPD 55 (259)
T ss_pred CCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchhhHhcCCCcc
Confidence 48999999999999997454566544333342 2234666655
No 70
>PRK10818 cell division inhibitor MinD; Provisional
Probab=87.36 E-value=0.44 Score=43.69 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiKGG 47 (353)
.-|.||||+++.|+-+|. +.|+++++. ..+|++.-.||+...
T Consensus 11 KGGvGKTt~a~nlA~~la-~~g~~vllvD~D~~~~~~~~~lg~~~~ 55 (270)
T PRK10818 11 KGGVGKTTSSAAIATGLA-QKGKKTVVIDFDIGLRNLDLIMGCERR 55 (270)
T ss_pred CCCCcHHHHHHHHHHHHH-HCCCeEEEEECCCCCCChhhhhCCCcc
Confidence 359999999999999996 579887654 444566666777644
No 71
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=86.53 E-value=0.39 Score=42.01 Aligned_cols=18 Identities=50% Similarity=0.697 Sum_probs=16.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|+|.||||.+.+++++|+
T Consensus 30 ~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 30 DLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 689999999999999885
No 72
>PRK00698 tmk thymidylate kinase; Validated
Probab=86.44 E-value=0.7 Score=40.00 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=27.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTF 42 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~F 42 (353)
|-|+||||.+--|.+.|.. .| ..+...|+|+ +..+
T Consensus 11 ~~gsGKsT~~~~L~~~l~~-~~-~~~~~~~~p~-~~~~ 45 (205)
T PRK00698 11 IDGAGKSTQIELLKELLEQ-QG-RDVVFTREPG-GTPL 45 (205)
T ss_pred CCCCCHHHHHHHHHHHHHH-cC-CceeEeeCCC-CChH
Confidence 6799999999999999964 46 4567789998 4334
No 73
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=85.78 E-value=0.6 Score=44.72 Aligned_cols=40 Identities=35% Similarity=0.289 Sum_probs=29.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEee--CCCCCCccccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVR--QPSQGPTFGIK 45 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lR--qPS~GP~FGiK 45 (353)
.=|.||||+|..|+.+|. .+|+++++-== |=-++--||+.
T Consensus 10 kGGvG~TTltAnLA~aL~-~~G~~VlaID~dpqN~Lrlhfg~~ 51 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALA-RLGESVLAIDLDPQNLLRLHFGLP 51 (243)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCcEEEEeCCcHHHHHHhcCCC
Confidence 348999999999999996 58998765322 33456667665
No 74
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=85.69 E-value=0.63 Score=43.27 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=25.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
.=|.||||+++-|+.+|. ..|+++.+.==.| ||+
T Consensus 10 KGGvGKTT~a~nLA~~la-~~G~~VlliD~Dp-Q~s 43 (231)
T PRK13849 10 KGGAGKTTALMGLCAALA-SDGKRVALFEADE-NRP 43 (231)
T ss_pred CCCccHHHHHHHHHHHHH-hCCCcEEEEeCCC-CCC
Confidence 458999999999999997 5788765443333 444
No 75
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=85.49 E-value=0.74 Score=36.12 Aligned_cols=26 Identities=42% Similarity=0.509 Sum_probs=21.1
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
-|+||||++..|++.|.. .|+++.+.
T Consensus 9 gG~Gkst~~~~la~~~~~-~~~~vl~~ 34 (104)
T cd02042 9 GGVGKTTTAVNLAAALAR-RGKRVLLI 34 (104)
T ss_pred CCcCHHHHHHHHHHHHHh-CCCcEEEE
Confidence 489999999999999974 57765543
No 76
>PTZ00301 uridine kinase; Provisional
Probab=85.30 E-value=0.86 Score=42.09 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=20.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|-|+||||++.-|.+.|.+++|..+
T Consensus 11 ~SgSGKTTla~~l~~~l~~~~~~~~ 35 (210)
T PTZ00301 11 ASGSGKSSLSTNIVSELMAHCGPVS 35 (210)
T ss_pred CCcCCHHHHHHHHHHHHHhhcCCCe
Confidence 6799999999999998876555443
No 77
>PRK13236 nitrogenase reductase; Reviewed
Probab=85.26 E-value=0.66 Score=44.27 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=24.6
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
=|.||||+++-|+.+|.+ .|+++.+.==.|-
T Consensus 15 GGVGKTt~a~NLA~~La~-~G~rVLliD~D~q 45 (296)
T PRK13236 15 GGIGKSTTSQNTLAAMAE-MGQRILIVGCDPK 45 (296)
T ss_pred CcCCHHHHHHHHHHHHHH-CCCcEEEEEccCC
Confidence 489999999999999975 7999866533443
No 78
>PRK13768 GTPase; Provisional
Probab=84.73 E-value=1 Score=42.14 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=28.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
|.|.||||++.+++++|. ..|+++.+.=-.|...
T Consensus 10 ~~G~GKTt~~~~~~~~l~-~~g~~v~~i~~D~~~~ 43 (253)
T PRK13768 10 TAGSGKTTLTKALSDWLE-EQGYDVAIVNLDPAVE 43 (253)
T ss_pred CCCccHHHHHHHHHHHHH-hcCCceEEEECCCccc
Confidence 589999999999999996 5799887766777544
No 79
>PRK13973 thymidylate kinase; Provisional
Probab=84.17 E-value=1.1 Score=40.48 Aligned_cols=34 Identities=35% Similarity=0.405 Sum_probs=27.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
+-|.||||.+-.|.+.|.+ .|.+ +...|+|+..|
T Consensus 11 ~dGsGKtTq~~~l~~~l~~-~g~~-~~~~~~p~~~~ 44 (213)
T PRK13973 11 GEGAGKSTQIRLLAERLRA-AGYD-VLVTREPGGSP 44 (213)
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCe-EEEEECCCCCc
Confidence 4599999999999999975 4665 56789998655
No 80
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=83.80 E-value=0.66 Score=42.47 Aligned_cols=37 Identities=35% Similarity=0.391 Sum_probs=27.7
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
|++|..+.|||++|.||.++|.+ .|.+ +..+|-=+.|
T Consensus 7 It~t~t~vGKT~vt~~L~~~l~~-~g~~-v~~~KPi~~g 43 (231)
T PRK12374 7 ITGTDTSVGKTVVSRALLQALAS-QGKT-VAGYKPVAKG 43 (231)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-CCCe-EEEECccccC
Confidence 67899999999999999999974 4555 3445533334
No 81
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=83.77 E-value=0.95 Score=36.78 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
+.-|+||||+++.|+-++.+.-|+++.+-
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~ 35 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLV 35 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEE
Confidence 45699999999999999974226665543
No 82
>PLN02924 thymidylate kinase
Probab=83.65 E-value=0.94 Score=41.99 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=28.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTF 42 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~F 42 (353)
+-|.||||.+--|.+.|.. .|.++ ..+|+|+.+...
T Consensus 24 iDGsGKsTq~~~L~~~l~~-~g~~v-~~~~ep~~~~~~ 59 (220)
T PLN02924 24 LDRSGKSTQCAKLVSFLKG-LGVAA-ELWRFPDRTTSV 59 (220)
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCCc-eeeeCCCCCChH
Confidence 3599999999999999985 57775 678999755444
No 83
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=83.61 E-value=1.1 Score=42.80 Aligned_cols=41 Identities=24% Similarity=0.159 Sum_probs=29.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccccC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIKG 46 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiKG 46 (353)
.=|.||||+++.|+.+|. ..|+++.+. .+.+++.-.||++.
T Consensus 102 KGGvGkTT~a~nLA~~la-~~g~~VlLvD~D~~~~~~~~~lg~~~ 145 (322)
T TIGR03815 102 RGGAGASTLAAALALAAA-RHGLRTLLVDADPWGGGLDLLLGAED 145 (322)
T ss_pred CCCCcHHHHHHHHHHHHH-hcCCCEEEEecCCCCCCeeeeecCCC
Confidence 459999999999999997 468876543 34444545677764
No 84
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=83.45 E-value=0.88 Score=46.75 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=28.5
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcc
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTF 42 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~F 42 (353)
|+.|..|.||||+|.||.++|.+ .|.++... .| ||.+
T Consensus 6 i~~~~s~~GKT~vt~gl~~~l~~-~g~~v~~~--K~--Gpd~ 42 (433)
T PRK13896 6 LGGTSSGVGKTVATLATIRALED-AGYAVQPA--KA--GPDF 42 (433)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH-CCCeeEEE--ee--CCCC
Confidence 57899999999999999999975 57665322 33 7765
No 85
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=83.30 E-value=0.9 Score=42.59 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=19.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|+|+||||.+-++.|=+.. .|+++.
T Consensus 4 paGSGKTT~~~~~~~~~~~-~~~~~~ 28 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLES-NGRDVY 28 (238)
T ss_dssp STTSSHHHHHHHHHHHHTT-T-S-EE
T ss_pred CCCCCHHHHHHHHHHHHHh-ccCCce
Confidence 8999999999999999964 565553
No 86
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.05 E-value=1.2 Score=38.10 Aligned_cols=28 Identities=36% Similarity=0.338 Sum_probs=22.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV 33 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l 33 (353)
|.|+||||++.-|+..+.. .|+++...=
T Consensus 8 ~~G~GKTt~~~~la~~~~~-~g~~v~~i~ 35 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKK-KGKKVLLVA 35 (173)
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCcEEEEE
Confidence 7899999999999999964 477655443
No 87
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=82.40 E-value=1.1 Score=40.61 Aligned_cols=31 Identities=26% Similarity=0.227 Sum_probs=24.9
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE---eeC
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQ 35 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~---lRq 35 (353)
..-|+||||++..|+..+.+ .|+++... .|.
T Consensus 6 g~~g~Gkt~~~~~la~~~a~-~g~~~~l~~~d~~~ 39 (217)
T cd02035 6 GKGGVGKTTIAAATAVRLAE-EGKKVLLVSTDPAH 39 (217)
T ss_pred CCCCchHHHHHHHHHHHHHH-CCCcEEEEECCCCc
Confidence 35699999999999999974 68887554 555
No 88
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=82.22 E-value=5.7 Score=40.13 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=25.5
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
-|.||||+.=.|.+-|. .-|+++-+--=.||--
T Consensus 60 PGaGKSTli~~L~~~l~-~~G~rVaVlAVDPSSp 92 (323)
T COG1703 60 PGAGKSTLIEALGRELR-ERGHRVAVLAVDPSSP 92 (323)
T ss_pred CCCchHHHHHHHHHHHH-HCCcEEEEEEECCCCC
Confidence 39999999999999996 5688765555567653
No 89
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=82.20 E-value=0.91 Score=47.36 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=20.7
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 3 PTPLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 3 PTP~GEGKsTttiGL~qal~~~lgk~ 28 (353)
=|-.|.||||+|+||.+||.+ .|.+
T Consensus 7 g~~SG~GKTTvT~glm~aL~~-rg~~ 31 (451)
T COG1797 7 GTSSGSGKTTVTLGLMRALRR-RGLK 31 (451)
T ss_pred cCCCCCcHHHHHHHHHHHHHh-cCCc
Confidence 367899999999999999975 4554
No 90
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=82.19 E-value=1.3 Score=41.17 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=29.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPT 41 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~ 41 (353)
.-|.||||.+--|.+-|.+ .|. .++..|||+-+|.
T Consensus 11 iDGaGKTT~~~~L~~~l~~-~g~-~v~~trEP~~~~i 45 (208)
T COG0125 11 IDGAGKTTQAELLKERLEE-RGI-KVVLTREPGGTPI 45 (208)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCC-eEEEEeCCCCChH
Confidence 3599999999999999975 466 6788999987664
No 91
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=81.07 E-value=2 Score=32.71 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.9
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|.|.|||++.+.+...+..
T Consensus 8 ~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 8 PTGSGKTLAALLPILELLD 26 (144)
T ss_pred CCCCchhHHHHHHHHHHHh
Confidence 7899999999999988864
No 92
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=80.87 E-value=2 Score=36.30 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=24.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
.-|+||||++..|+..+. ..|+++.+.=-.|
T Consensus 8 kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~ 38 (139)
T cd02038 8 KGGVGKTNISANLALALA-KLGKRVLLLDADL 38 (139)
T ss_pred CCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC
Confidence 569999999999999997 5688776654444
No 93
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=80.76 E-value=1.2 Score=43.58 Aligned_cols=26 Identities=38% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
.=|-||||||--|+-||+ .+||++++
T Consensus 11 KGGVGKTTttAnig~aLA-~~GkKv~l 36 (272)
T COG2894 11 KGGVGKTTTTANIGTALA-QLGKKVVL 36 (272)
T ss_pred CCCcCccchhHHHHHHHH-HcCCeEEE
Confidence 458999999999999996 68999865
No 94
>PRK07933 thymidylate kinase; Validated
Probab=79.67 E-value=2.3 Score=38.88 Aligned_cols=33 Identities=36% Similarity=0.422 Sum_probs=26.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
+-|+||||.+--|.+.|.+ .|.+ +...|+|..|
T Consensus 8 ~dGsGKST~~~~L~~~L~~-~g~~-v~~~~~P~~~ 40 (213)
T PRK07933 8 VDGAGKRTLTEALRAALEA-RGRS-VATLAFPRYG 40 (213)
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCe-EEEEecCCCC
Confidence 3599999999999999975 4665 6778999654
No 95
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=79.12 E-value=2.5 Score=36.59 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=26.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
+-|.||||.+-=|.|.|+. .|.++ ..+++|+-.
T Consensus 11 ~~GsGKsT~~~~L~~~l~~-~g~~v-~~~~~~~~~ 43 (195)
T TIGR00041 11 IDGAGKTTQANLLKKLLQE-NGYDV-LFTREPGGT 43 (195)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCeE-EEEeCCCCC
Confidence 4699999999999999974 57665 468999743
No 96
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=78.43 E-value=1.3 Score=44.99 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=25.5
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
|+=|.-|.||||+|.||+++|. +.|.++...
T Consensus 4 I~gT~t~vGKT~vt~~L~~~L~-~~G~~V~~f 34 (449)
T TIGR00379 4 IAGTSSGVGKTTISTGIMKALS-RRKLRVQPF 34 (449)
T ss_pred EEeCCCCCcHHHHHHHHHHHHH-HCCCceeEE
Confidence 4668899999999999999996 468875443
No 97
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=78.07 E-value=1.9 Score=41.19 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=20.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|-|+|||||+.-|+..+. ..|+++.
T Consensus 80 ~~G~GKTTt~akLA~~l~-~~g~~V~ 104 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLK-KQGKSVL 104 (272)
T ss_pred CCCCcHHHHHHHHHHHHH-hcCCEEE
Confidence 789999999999999995 4576653
No 98
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=77.76 E-value=1.1 Score=34.06 Aligned_cols=19 Identities=42% Similarity=0.632 Sum_probs=16.6
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|.|.||||++..|++.+..
T Consensus 10 ~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 10 PPGSGKTTLARALARELGP 28 (148)
T ss_pred CCCCcHHHHHHHHHhccCC
Confidence 7899999999999888753
No 99
>PRK00300 gmk guanylate kinase; Provisional
Probab=77.41 E-value=1.6 Score=38.23 Aligned_cols=38 Identities=32% Similarity=0.370 Sum_probs=27.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFG 43 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FG 43 (353)
|-|+||||++.-|.+-+. ......-..-|+|..|-.-|
T Consensus 13 ~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g 50 (205)
T PRK00300 13 PSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDG 50 (205)
T ss_pred CCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCC
Confidence 679999999888877654 34444456778998877443
No 100
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=75.87 E-value=2.1 Score=41.06 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=21.5
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
+.=|.||||..+.|+.+|.+ .|+++.+
T Consensus 9 ~KGGaGKTT~~~~LAs~la~-~G~~V~l 35 (231)
T PF07015_consen 9 SKGGAGKTTAAMALASELAA-RGARVAL 35 (231)
T ss_pred CCCCCcHHHHHHHHHHHHHH-CCCeEEE
Confidence 34599999999999999974 5776543
No 101
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=75.44 E-value=2.4 Score=42.10 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=33.7
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCC--CCCCcccccCch
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQP--SQGPTFGIKGSH 48 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqP--S~GP~FGiKGGa 48 (353)
=|-||||++..++=.+.+ .|+++.+--=.| |+|.+|+++=|+
T Consensus 11 GGVGKTT~aaA~A~~lA~-~g~kvLlvStDPAhsL~d~f~~elg~ 54 (322)
T COG0003 11 GGVGKTTIAAATAVKLAE-SGKKVLLVSTDPAHSLGDVFDLELGH 54 (322)
T ss_pred CcccHHHHHHHHHHHHHH-cCCcEEEEEeCCCCchHhhhccccCC
Confidence 389999999999988865 588866655666 899999996664
No 102
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=75.17 E-value=1.9 Score=34.34 Aligned_cols=17 Identities=53% Similarity=0.677 Sum_probs=14.2
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|.|+||||++.=|++.+
T Consensus 7 ~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERL 23 (121)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 67999999987777766
No 103
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=75.14 E-value=3 Score=39.77 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=20.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV 33 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l 33 (353)
|-|.|||||...|+..+..+.|...++.+
T Consensus 202 ptGvGKTTt~~kLa~~~~~~~g~~~V~li 230 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVLEHGNKKVALI 230 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 56999999999999998643243333333
No 104
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=74.83 E-value=2.6 Score=43.27 Aligned_cols=26 Identities=35% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|.|+|||||+.-|+..|..+.|+++.
T Consensus 107 ~~GsGKTTtaakLA~~l~~~~g~kV~ 132 (428)
T TIGR00959 107 LQGSGKTTTCGKLAYYLKKKQGKKVL 132 (428)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCeEE
Confidence 68999999999999998534577764
No 105
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=74.75 E-value=2.4 Score=35.86 Aligned_cols=30 Identities=33% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 3 PTPLGEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 3 PTP~GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
.|-.|+||||+|.||.+.|.+ .|.+ +.++|
T Consensus 5 ~~~~~~Gkt~~~~~l~~~l~~-~~~~-v~~~k 34 (134)
T cd03109 5 GTGTDIGKTVATAILARALKE-KGYR-VAPLK 34 (134)
T ss_pred eCCCCcCHHHHHHHHHHHHHH-CCCe-EEEEe
Confidence 467889999999999999975 4555 44444
No 106
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=74.08 E-value=1.7 Score=41.67 Aligned_cols=19 Identities=47% Similarity=0.555 Sum_probs=17.4
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|+|+||||++..|++.|+-
T Consensus 12 PagsGKsTvak~lA~~Lg~ 30 (222)
T COG0283 12 PAGSGKSTVAKILAEKLGF 30 (222)
T ss_pred CCccChHHHHHHHHHHhCC
Confidence 9999999999999998874
No 107
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=73.78 E-value=3.4 Score=37.07 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=24.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|-|+||||+.--|.+.+... .+..+.++.+|-
T Consensus 9 ptGSGKTTll~~ll~~~~~~-~~~~i~t~e~~~ 40 (198)
T cd01131 9 PTGSGKSTTLAAMIDYINKN-KTHHILTIEDPI 40 (198)
T ss_pred CCCCCHHHHHHHHHHHhhhc-CCcEEEEEcCCc
Confidence 67999999998888888643 345677777764
No 108
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=73.63 E-value=3.1 Score=35.60 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=15.6
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|.|.|||||...+...+
T Consensus 25 pPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 25 PPGTGKTTTLASIIAQL 41 (236)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHh
Confidence 77999999999998888
No 109
>PRK04296 thymidine kinase; Provisional
Probab=73.09 E-value=3.9 Score=36.50 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=26.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFG 43 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FG 43 (353)
|.|.||||.+++++..+.. -|+++.+. -|++.+.++
T Consensus 10 ~~GsGKTT~~l~~~~~~~~-~g~~v~i~--k~~~d~~~~ 45 (190)
T PRK04296 10 AMNSGKSTELLQRAYNYEE-RGMKVLVF--KPAIDDRYG 45 (190)
T ss_pred CCCCHHHHHHHHHHHHHHH-cCCeEEEE--ecccccccc
Confidence 6799999999999998854 37766543 466555544
No 110
>PRK00131 aroK shikimate kinase; Reviewed
Probab=72.43 E-value=2.2 Score=35.62 Aligned_cols=18 Identities=44% Similarity=0.434 Sum_probs=16.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-|++.|+
T Consensus 12 ~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999999874
No 111
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=72.11 E-value=2.8 Score=43.66 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.4
Q ss_pred CCCCCCCCCcchhHHHHHHHHHh
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~ 23 (353)
|+-|--|.||||+|.||.++|.+
T Consensus 243 Iagt~Tg~GKT~vt~~L~~al~~ 265 (476)
T PRK06278 243 LLATGSESGKTFLTTSIAGKLRG 265 (476)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 46688999999999999999964
No 112
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=71.79 E-value=2.4 Score=37.50 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=19.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~ 28 (353)
|-|+||||++--|.+.|++ .|.+
T Consensus 7 ~sgSGKTTla~~L~~~L~~-~~~~ 29 (194)
T PF00485_consen 7 PSGSGKTTLAKRLAQILNK-RGIP 29 (194)
T ss_dssp STTSSHHHHHHHHHHHHTT-CTTT
T ss_pred CCCCCHHHHHHHHHHHhCc-cCcC
Confidence 6799999999999999974 4544
No 113
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=71.57 E-value=15 Score=35.23 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=50.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCchhhhhhhhccchhhhhhhhccCCceeeeecCcceeee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSHMALLLSGLTGAMAVLLKDAVQPNLMQTLEGTPVMVH 84 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGama~ll~~~~Ga~~vll~da~~pNL~qtleg~p~~iH 84 (353)
|-|.||||+..-|+..+.. .|+++.+.-=.|+. -..||+ ++.|..+.+- .-+-..+++.
T Consensus 42 ~~G~GKttl~~~l~~~~~~-~~~~v~~i~~D~~~----~~~~~~--------------~~~~~~~~~~--~~~~~~~~~~ 100 (300)
T TIGR00750 42 TPGAGKSTLLEALGMELRR-RGLKVAVIAVDPSS----PFTGGS--------------ILGDRTRMQR--LATDPGAFIR 100 (300)
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCC----Ccchhh--------------hcccchhhhh--cccCCCceee
Confidence 6799999999999999975 57776443333432 112222 1222221111 0111223555
Q ss_pred cccchhhhhcchhHHHHHHHHhhccCCCeEEee-ccccc
Q psy7967 85 AGPFANIAHGCSSVVADLIALKLVGAEGYVVTE-AGFGS 122 (353)
Q Consensus 85 ~gpfANiahg~~s~~ad~~al~l~g~~~~vvTe-AGfg~ 122 (353)
..|....--|++..+.+-+.+--....|+|+.| +|-|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~ 139 (300)
T TIGR00750 101 SMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQ 139 (300)
T ss_pred ecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCch
Confidence 555544334444444444433222356999999 67553
No 114
>PRK00784 cobyric acid synthase; Provisional
Probab=71.45 E-value=2.5 Score=43.42 Aligned_cols=29 Identities=31% Similarity=0.340 Sum_probs=24.0
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
||=|.-|.||||+|.||+++|.+ .|.++.
T Consensus 7 ItGT~T~vGKT~vt~~L~~~l~~-~G~~v~ 35 (488)
T PRK00784 7 VQGTASDAGKSTLVAGLCRILAR-RGYRVA 35 (488)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHH-CCCeEe
Confidence 45689999999999999999974 576654
No 115
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=71.43 E-value=2.3 Score=43.16 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=23.2
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 2 TPTPLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 2 tPTP~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
+=|.-|.||||+|.||+++|. ..|.++.
T Consensus 9 ~gt~s~~GKT~it~~L~~~L~-~~G~~V~ 36 (451)
T PRK01077 9 AAPASGSGKTTVTLGLMRALR-RRGLRVQ 36 (451)
T ss_pred EeCCCCCcHHHHHHHHHHHHH-hCCCCcc
Confidence 447889999999999999996 4687654
No 116
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=71.11 E-value=4 Score=36.73 Aligned_cols=27 Identities=41% Similarity=0.508 Sum_probs=20.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
|+|.||||+..-+.+++.. -|++++++
T Consensus 26 ~aGtGKT~~l~~~~~~~~~-~g~~v~~~ 52 (196)
T PF13604_consen 26 PAGTGKTTLLKALAEALEA-AGKRVIGL 52 (196)
T ss_dssp STTSTHHHHHHHHHHHHHH-TT--EEEE
T ss_pred CCCCCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 7899999999999999975 47666654
No 117
>PRK10867 signal recognition particle protein; Provisional
Probab=70.79 E-value=3.9 Score=42.19 Aligned_cols=27 Identities=37% Similarity=0.397 Sum_probs=21.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
|-|+|||||+.-|+..|...-|+++.+
T Consensus 108 ~~GsGKTTtaakLA~~l~~~~G~kV~l 134 (433)
T PRK10867 108 LQGAGKTTTAGKLAKYLKKKKKKKVLL 134 (433)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcEEE
Confidence 689999999999999996433776643
No 118
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=70.36 E-value=3.9 Score=41.60 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=27.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
|-|+|||||--.+.+-+|++ -...|++|-.|
T Consensus 133 pTGSGKSTTlAamId~iN~~-~~~HIlTIEDP 163 (353)
T COG2805 133 PTGSGKSTTLAAMIDYINKH-KAKHILTIEDP 163 (353)
T ss_pred CCCCcHHHHHHHHHHHHhcc-CCcceEEecCc
Confidence 77999999999999999976 46778888877
No 119
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=69.47 E-value=2.8 Score=45.01 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=26.2
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
|++|..+.|||++|.||.++|.+ .|.+ +...|
T Consensus 7 I~~T~t~~GKT~vslgL~~~L~~-~G~~-Vg~fK 38 (684)
T PRK05632 7 LAPTGTGVGLTSVSLGLMRALER-KGVK-VGFFK 38 (684)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh-CCCe-EEEeC
Confidence 57899999999999999999975 4665 44456
No 120
>PF13245 AAA_19: Part of AAA domain
Probab=68.86 E-value=6.2 Score=30.98 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=16.6
Q ss_pred CCCCCCcchhHHHHHHHHH
Q psy7967 4 TPLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~ 22 (353)
-|.|.|||||.+-+...+-
T Consensus 17 g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 17 GPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 4889999999999888875
No 121
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=68.61 E-value=4.5 Score=36.86 Aligned_cols=24 Identities=42% Similarity=0.501 Sum_probs=19.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|-|.|||||..=|+.-+..+ ++++
T Consensus 9 ptGvGKTTt~aKLAa~~~~~-~~~v 32 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARLKLK-GKKV 32 (196)
T ss_dssp STTSSHHHHHHHHHHHHHHT-T--E
T ss_pred CCCCchHhHHHHHHHHHhhc-cccc
Confidence 78999999999999999765 5554
No 122
>PRK06696 uridine kinase; Validated
Probab=68.47 E-value=4.6 Score=36.64 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=19.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
+-|+||||++--|++.|+. .|..+
T Consensus 30 ~sgsGKSTlA~~L~~~l~~-~g~~v 53 (223)
T PRK06696 30 ITASGKTTFADELAEEIKK-RGRPV 53 (223)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCeE
Confidence 5799999999999999974 35433
No 123
>PRK08233 hypothetical protein; Provisional
Probab=68.33 E-value=2.6 Score=35.67 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=14.6
Q ss_pred CCCCcchhHHHHHHHHH
Q psy7967 6 LGEGKSTTTIGLAQALA 22 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~ 22 (353)
-|.||||++.-|++.|.
T Consensus 12 ~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 12 SGGGKTTLTERLTHKLK 28 (182)
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 39999999998888774
No 124
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=67.48 E-value=2.8 Score=35.67 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=23.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
|-|.||||++.-|.+-+....+...-.+-|+|..|-
T Consensus 7 psGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e 42 (137)
T cd00071 7 PSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE 42 (137)
T ss_pred CCCCCHHHHHHHHHhcCCccceecccccccCCCCCc
Confidence 789999998877776554333333344567776543
No 125
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=67.07 E-value=5 Score=38.47 Aligned_cols=40 Identities=33% Similarity=0.348 Sum_probs=28.3
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcc-ccc
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTF-GIK 45 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~F-GiK 45 (353)
..-|.||||++..|+++|. ..|+++.+.=-.|+ .|+| |.|
T Consensus 10 ~KGGvGKSt~a~~la~~l~-~~g~~vl~iD~D~~-n~~~~~~~ 50 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYKA-SKGQKPLCIDTDPV-NATFEGYK 50 (241)
T ss_pred CCCCCcHHHHHHHHHHHHH-hCCCCEEEEECCCC-CchhhhHH
Confidence 3469999999999999996 56887644335565 4544 444
No 126
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=66.31 E-value=5.4 Score=33.53 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=26.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeC-CCCCCccccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQ-PSQGPTFGIK 45 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRq-PS~GP~FGiK 45 (353)
+-|.||||++.-|++.|.+ .|+++.+-=-. ||+-.-|+.+
T Consensus 7 kgG~GKTt~a~~la~~l~~-~g~~V~~id~D~~~~~~~~~~~ 47 (116)
T cd02034 7 KGGVGKTTIAALLARYLAE-KGKPVLAIDADPDDLPERLSVE 47 (116)
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCcEEEEECCchhhHHHHhhc
Confidence 4699999999999999964 67776433333 4444444433
No 127
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=65.65 E-value=5.5 Score=39.12 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=20.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|-|+|||||+.-|+..+. ..|+++.
T Consensus 122 pnGsGKTTt~~kLA~~l~-~~g~~V~ 146 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKYK-AQGKKVL 146 (318)
T ss_pred CCCCcHHHHHHHHHHHHH-hcCCeEE
Confidence 779999999999999986 4566554
No 128
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=65.32 E-value=3 Score=32.94 Aligned_cols=18 Identities=50% Similarity=0.637 Sum_probs=15.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|++.++
T Consensus 6 ~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYLG 23 (132)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred cCCCCeeHHHHHHHhhcc
Confidence 789999999988888874
No 129
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=65.19 E-value=7.9 Score=31.41 Aligned_cols=22 Identities=45% Similarity=0.495 Sum_probs=19.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKH 26 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lg 26 (353)
|.|.|||+++-=|++.|..+++
T Consensus 6 ~~G~GKS~l~~~l~~~l~~~~~ 27 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDLLKHIG 27 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHhc
Confidence 4599999999999999987763
No 130
>PRK07667 uridine kinase; Provisional
Probab=64.72 E-value=6.1 Score=35.22 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=23.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
+-|.||||++.-|.+.|++ .|.+ +..+..++
T Consensus 25 ~~gsGKStla~~L~~~l~~-~~~~-~~~i~~Dd 55 (193)
T PRK07667 25 LSRSGKTTFVANLKENMKQ-EGIP-FHIFHIDD 55 (193)
T ss_pred CCCCCHHHHHHHHHHHHHh-CCCc-EEEEEcCc
Confidence 5699999999999999974 4654 45566665
No 131
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=64.34 E-value=4.1 Score=33.10 Aligned_cols=18 Identities=50% Similarity=0.626 Sum_probs=15.6
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|+||||++.-|+..++
T Consensus 7 ~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 7 PAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999999988764
No 132
>KOG1144|consensus
Probab=63.25 E-value=6.2 Score=44.37 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=40.2
Q ss_pred HHHHHHhcCeEEeecCCCCceeeccccccccCcceEEeecccccCcccHHHHHHHHHHHhhc
Q psy7967 287 EDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATEL 348 (353)
Q Consensus 287 ~DLk~RLgrIvVg~t~dg~PVta~DL~a~~~GAm~a~~~~~w~~Gg~ga~~la~~v~~~~e~ 348 (353)
.++++|+.+|+|-|.-.|=-...- .+-+..|- .+.+--.-|--|+|--+|---++..+++
T Consensus 629 ~EF~~R~~~ii~efaEQgLN~~Ly-ykNk~~~~-~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQGLNAELY-YKNKEMGE-TVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHHHHHHHHcccchhhe-eecccccc-eEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 489999999999998876333221 11122343 3444455677899999998888887764
No 133
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=62.40 E-value=6.5 Score=38.49 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=24.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|-|+|||||.-.|.+.+..+ .+..++++-+|.
T Consensus 130 ~tGSGKTT~l~al~~~i~~~-~~~~i~tiEdp~ 161 (343)
T TIGR01420 130 PTGSGKSTTLASMIDYINKN-AAGHIITIEDPI 161 (343)
T ss_pred CCCCCHHHHHHHHHHhhCcC-CCCEEEEEcCCh
Confidence 67999999999998887643 345677887773
No 134
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=61.76 E-value=5.7 Score=31.22 Aligned_cols=17 Identities=41% Similarity=0.477 Sum_probs=14.1
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
+.|.||||++-=|.+-+
T Consensus 6 ~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL 22 (129)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 56999999988887775
No 135
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=61.67 E-value=4.6 Score=34.72 Aligned_cols=16 Identities=50% Similarity=0.532 Sum_probs=14.7
Q ss_pred CCCcchhHHHHHHHHH
Q psy7967 7 GEGKSTTTIGLAQALA 22 (353)
Q Consensus 7 GEGKsTttiGL~qal~ 22 (353)
|.||||+..-|++.|+
T Consensus 2 GsGKStvg~~lA~~L~ 17 (158)
T PF01202_consen 2 GSGKSTVGKLLAKRLG 17 (158)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhC
Confidence 8999999999999886
No 136
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=61.22 E-value=4.2 Score=34.43 Aligned_cols=17 Identities=47% Similarity=0.550 Sum_probs=14.5
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|.|.||||++.=|++.|
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 78999999988887765
No 137
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=61.08 E-value=8.6 Score=35.43 Aligned_cols=18 Identities=39% Similarity=0.375 Sum_probs=15.9
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|.+.|.
T Consensus 7 ~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 7 SVAVGKSTTARVLQALLS 24 (220)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 679999999998888885
No 138
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=60.98 E-value=7.8 Score=32.08 Aligned_cols=25 Identities=44% Similarity=0.485 Sum_probs=19.9
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
+--|.||||++..|+..|++ .|+++
T Consensus 8 ~~~g~G~t~~a~~lA~~la~-~~~~V 32 (157)
T PF13614_consen 8 PKGGVGKTTLALNLAAALAR-KGKKV 32 (157)
T ss_dssp SSTTSSHHHHHHHHHHHHHH-TTT-E
T ss_pred CCCCCCHHHHHHHHHHHHHh-cCCCe
Confidence 34589999999999999975 57664
No 139
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=60.80 E-value=4.6 Score=34.54 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=22.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
|-|.||||++.-|.+-+.. .....-...|.|..|.
T Consensus 9 ~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~ 43 (180)
T TIGR03263 9 PSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGE 43 (180)
T ss_pred CCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCC
Confidence 7899999977666554422 2233334668888665
No 140
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=58.84 E-value=6.9 Score=38.64 Aligned_cols=40 Identities=35% Similarity=0.352 Sum_probs=27.5
Q ss_pred CCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCc
Q psy7967 7 GEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGS 47 (353)
Q Consensus 7 GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGG 47 (353)
|-|||||+--|+-||. ..|++++.-==.|--=-|--+-||
T Consensus 10 GIGKST~~~Nlsaala-~~G~kVl~iGCDPK~DST~~ll~g 49 (273)
T PF00142_consen 10 GIGKSTTASNLSAALA-EMGKKVLQIGCDPKADSTRLLLGG 49 (273)
T ss_dssp TSSHHHHHHHHHHHHH-HTT--EEEEEESSSSTSSCHHHTT
T ss_pred CcccChhhhHHHHHHH-hccceeeEecccCCCccceeccCC
Confidence 7899999999999996 689998765556655555333333
No 141
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=58.82 E-value=9.4 Score=38.20 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=26.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcC-CceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKH-KNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lg-k~~~~~lRqPS~GP 40 (353)
|-|+|||||.-.|.+-+....+ ...++.+-.|.--+
T Consensus 142 pTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~ 178 (358)
T TIGR02524 142 ATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFV 178 (358)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEe
Confidence 6799999999999888864333 34677888886543
No 142
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=58.71 E-value=10 Score=38.41 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQ 38 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~ 38 (353)
|-|+|||||.-.|.+.+........++++=+|.-
T Consensus 157 ~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 157 ETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCceEEEEecCch
Confidence 6799999999999998864333455778877754
No 143
>PF05729 NACHT: NACHT domain
Probab=58.48 E-value=7.2 Score=31.78 Aligned_cols=19 Identities=53% Similarity=0.487 Sum_probs=17.0
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
+.|.||||+..-+++.+..
T Consensus 8 ~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 8 EPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred CCCCChHHHHHHHHHHHHh
Confidence 6899999999999999864
No 144
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=57.61 E-value=11 Score=34.57 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=20.7
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|+-|-||||.++|++--... .|+++.
T Consensus 12 ~g~GkGKtt~a~g~a~ra~~-~g~~v~ 37 (173)
T TIGR00708 12 TGNGKGKTTAAFGMALRALG-HGKKVG 37 (173)
T ss_pred CCCCCChHHHHHHHHHHHHH-CCCeEE
Confidence 78899999999999876643 477764
No 145
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=57.42 E-value=11 Score=28.41 Aligned_cols=17 Identities=47% Similarity=0.528 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
+-|.||||.+.-|.+.|
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999998887
No 146
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.34 E-value=8.9 Score=39.16 Aligned_cols=18 Identities=50% Similarity=0.595 Sum_probs=16.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.|||||+.-|+-.+.
T Consensus 229 ptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 229 PTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 579999999999998885
No 147
>COG4240 Predicted kinase [General function prediction only]
Probab=57.23 E-value=10 Score=37.71 Aligned_cols=29 Identities=34% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeEe
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFACV 33 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~l 33 (353)
-|-|+||||+++-|.--|. ++|-.+++.+
T Consensus 57 GpQGSGKStls~~i~~~L~-~kg~ert~~l 85 (300)
T COG4240 57 GPQGSGKSTLSALIVRLLA-AKGLERTATL 85 (300)
T ss_pred cCCCCchhhHHHHHHHHHH-HhcccceEEe
Confidence 3789999999999998886 4553355443
No 148
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=57.11 E-value=14 Score=34.68 Aligned_cols=40 Identities=23% Similarity=0.440 Sum_probs=22.5
Q ss_pred CCCCCcchhHHHHH-HHHHhhcCCceeeEeeCCCC-CCccccc
Q psy7967 5 PLGEGKSTTTIGLA-QALAAHKHKNTFACVRQPSQ-GPTFGIK 45 (353)
Q Consensus 5 P~GEGKsTttiGL~-qal~~~lgk~~~~~lRqPS~-GP~FGiK 45 (353)
|+|.|||.+++..+ +.+.. -..+.++..|.+.. |--.|.-
T Consensus 27 ~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGfl 68 (205)
T PF02562_consen 27 PAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFL 68 (205)
T ss_dssp -TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS
T ss_pred CCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccC
Confidence 89999999988776 34432 34567888898773 7777754
No 149
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=57.05 E-value=9.7 Score=39.33 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=21.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
|-|+|||||+.-|+..|.. .|+++.+
T Consensus 103 ~~GsGKTTtaakLA~~L~~-~g~kV~l 128 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFKK-KGLKVGL 128 (437)
T ss_pred CCCCcHHHHHHHHHHHHHH-cCCeEEE
Confidence 5799999999999999964 5776643
No 150
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=56.92 E-value=5.5 Score=33.14 Aligned_cols=18 Identities=44% Similarity=0.495 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-|.+.++
T Consensus 7 ~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 7 VSGSGKSTVGKALAERLG 24 (150)
T ss_pred CCCCCHHHHHHHHHhhcC
Confidence 579999999998888753
No 151
>PRK06547 hypothetical protein; Provisional
Probab=56.83 E-value=6 Score=35.31 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=14.9
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|.|+||||++--|++.+
T Consensus 23 ~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 23 RSGSGKTTLAGALAART 39 (172)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999998888875
No 152
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=56.59 E-value=11 Score=34.05 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=20.2
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|+-|-||||.++|++-.... .|+++.
T Consensus 9 ~g~G~Gkt~~a~g~~~ra~~-~g~~v~ 34 (159)
T cd00561 9 TGNGKGKTTAALGLALRALG-HGYRVG 34 (159)
T ss_pred CCCCCCHHHHHHHHHHHHHH-CCCeEE
Confidence 67799999999999876644 377664
No 153
>PRK13947 shikimate kinase; Provisional
Probab=56.31 E-value=6.6 Score=33.27 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.6
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-|++.|+
T Consensus 9 ~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 9 FMGTGKTTVGKRVATTLS 26 (171)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999988888875
No 154
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=55.80 E-value=9.1 Score=38.70 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=23.1
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~ 28 (353)
+.||..|+|||.++.||..+|.+ .|.+
T Consensus 7 l~p~~~~~G~tsi~lgLl~~l~~-k~~k 33 (354)
T COG0857 7 LIPTETGVGKTSISLGLLRALEQ-KGLK 33 (354)
T ss_pred EeccCCCccHHHHHHHHHHHHHH-cCce
Confidence 46999999999999999999975 4554
No 155
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=55.75 E-value=10 Score=39.27 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=20.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|-|.|||||+.-|+..|. ..|+++.
T Consensus 108 ~~GvGKTTtaaKLA~~l~-~~G~kV~ 132 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYYYQ-RKGFKPC 132 (429)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCCEE
Confidence 679999999999999996 4577654
No 156
>PRK05480 uridine/cytidine kinase; Provisional
Probab=55.64 E-value=7.2 Score=34.59 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.8
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||++.-|.+.|
T Consensus 14 ~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 14 GSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999998888876
No 157
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=55.44 E-value=11 Score=34.40 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=20.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|-|.||||++--|++.|...-|...+
T Consensus 41 ~~GsGKTTl~~~L~~~l~~~~g~~~v 66 (229)
T PRK09270 41 PPGAGKSTLAEFLEALLQQDGELPAI 66 (229)
T ss_pred CCCCCHHHHHHHHHHHhhhccCCceE
Confidence 67999999999999999754444344
No 158
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=55.30 E-value=11 Score=33.03 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=22.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQ 35 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRq 35 (353)
|.|.||||++.-|.+.|.. .|.+ ++.+..
T Consensus 7 ~~gsGKTtl~~~l~~~l~~-~G~~-V~viK~ 35 (155)
T TIGR00176 7 PKNSGKTTLIERLVKALKA-RGYR-VATIKH 35 (155)
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCe-EEEEec
Confidence 5699999999999999964 4765 445553
No 159
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=55.03 E-value=12 Score=37.95 Aligned_cols=29 Identities=34% Similarity=0.354 Sum_probs=20.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV 33 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l 33 (353)
|-|.|||||..-|+..+....|++.++.+
T Consensus 145 ptGvGKTTtiakLA~~~~~~~G~~~V~li 173 (374)
T PRK14722 145 PTGVGKTTTTAKLAARCVMRFGASKVALL 173 (374)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 77999999999999876434464444433
No 160
>PRK03839 putative kinase; Provisional
Probab=54.95 E-value=7 Score=33.78 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+-|.||||++.-|++.++
T Consensus 8 ~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 569999999888888774
No 161
>PHA00729 NTP-binding motif containing protein
Probab=54.95 E-value=7 Score=37.28 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=16.0
Q ss_pred CCCCCCcchhHHHHHHHHH
Q psy7967 4 TPLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~ 22 (353)
|| |.||||++..|++.++
T Consensus 25 ~p-GvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 25 KQ-GSGKTTYALKVARDVF 42 (226)
T ss_pred CC-CCCHHHHHHHHHHHHH
Confidence 45 9999999999999875
No 162
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=54.94 E-value=6 Score=32.14 Aligned_cols=17 Identities=53% Similarity=0.669 Sum_probs=12.9
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||.+--|.+.+
T Consensus 7 ~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 67999999976665544
No 163
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=54.75 E-value=9.6 Score=36.28 Aligned_cols=102 Identities=27% Similarity=0.365 Sum_probs=59.7
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCc----hhhhh--hhhccchhh----hhhhhccCC
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGS----HMALL--LSGLTGAMA----VLLKDAVQP 70 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGG----ama~l--l~~~~Ga~~----vll~da~~p 70 (353)
||=|.-|-|||++|-+|+|+|.. -|.+++.. -|=| .|..-. -...+ ++++.-.|. ..++...-|
T Consensus 7 VtGTDT~VGKTv~S~aL~~~l~~-~g~~~~~~--KPVq---sG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P~sP 80 (223)
T COG0132 7 VTGTDTGVGKTVVSAALAQALKQ-QGYSVAGY--KPVQ---TGSEETAENSDALVLQRLSGLDLSYELINPYRFKEPLSP 80 (223)
T ss_pred EEeCCCCccHHHHHHHHHHHHHh-CCCeeEEE--Ccee---eCCCCCCCCchHHHHHHhcCCCcccccccceecCCCCCc
Confidence 45688999999999999999975 47776532 2211 122221 12222 456665554 346667778
Q ss_pred ceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCCeEEeeccccc
Q psy7967 71 NLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVTEAGFGS 122 (353)
Q Consensus 71 NL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~~vvTeAGfg~ 122 (353)
++.+-+||.+ +...++ -+.+. .+.-+.|+||-|.-.|-
T Consensus 81 hlAa~~eg~~-----I~~~~l--------~~~l~-~l~~~~d~vlVEGAGGl 118 (223)
T COG0132 81 HLAAELEGRT-----IDLEKL--------SQGLR-QLLKKYDLVLVEGAGGL 118 (223)
T ss_pred HHHHhhcCCc-----ccHHHH--------HHHHH-hhhcccCEEEEeCCCce
Confidence 8888888742 333333 11110 23336688888864443
No 164
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=54.52 E-value=6.5 Score=32.92 Aligned_cols=18 Identities=44% Similarity=0.606 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+.|+||||++.-|++.|+
T Consensus 8 ~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 8 PPGSGKTTVAKILAEKLS 25 (171)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 679999999988887654
No 165
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=53.66 E-value=11 Score=37.38 Aligned_cols=42 Identities=36% Similarity=0.321 Sum_probs=34.3
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH 48 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa 48 (353)
=|-|||||+.-|+-||. .+||+++..==.|--=.|+=+-||.
T Consensus 10 GGIGKSTts~N~aAAla-~~GkkVl~vGCDPKaDSTr~Llgg~ 51 (278)
T COG1348 10 GGIGKSTTSQNLAAALA-ELGKKVLIVGCDPKADSTRLLLGGK 51 (278)
T ss_pred CCcCcchhHHHHHHHHH-HcCCeEEEEcCCCCcchHHHHhCCc
Confidence 37899999999999996 5799998776678777777766663
No 166
>PRK08118 topology modulation protein; Reviewed
Probab=53.25 E-value=7.8 Score=34.10 Aligned_cols=18 Identities=39% Similarity=0.422 Sum_probs=14.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++.-|++-++
T Consensus 9 ~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLN 26 (167)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999998887777764
No 167
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=52.83 E-value=8 Score=33.20 Aligned_cols=18 Identities=39% Similarity=0.340 Sum_probs=15.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||+.--|++.+.
T Consensus 9 ~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 9 PSGAGKDTLLDYARARLA 26 (179)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 789999999998887764
No 168
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=51.82 E-value=9.2 Score=33.56 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.5
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||++--|.+.|
T Consensus 7 ~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 7 GSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999998887766
No 169
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=51.25 E-value=12 Score=36.04 Aligned_cols=42 Identities=29% Similarity=0.252 Sum_probs=27.2
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCCC---CCCcccccCc
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQPS---QGPTFGIKGS 47 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS---~GP~FGiKGG 47 (353)
=|.||||+|.-|+=++.+..|+++++-==.++ ++=.||++..
T Consensus 12 GGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~ 56 (262)
T COG0455 12 GGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESK 56 (262)
T ss_pred CCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCC
Confidence 38999999999966665555565433322344 4445777764
No 170
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=51.04 E-value=5.9 Score=37.29 Aligned_cols=19 Identities=47% Similarity=0.662 Sum_probs=16.1
Q ss_pred CCCCCCcchhHHHHHHHHH
Q psy7967 4 TPLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~ 22 (353)
-|+|.|||.|...|+++|+
T Consensus 39 GpagtGKtetik~La~~lG 57 (231)
T PF12774_consen 39 GPAGTGKTETIKDLARALG 57 (231)
T ss_dssp SSTTSSHHHHHHHHHHCTT
T ss_pred CCCCCCchhHHHHHHHHhC
Confidence 4899999999988887764
No 171
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=50.90 E-value=14 Score=32.77 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=18.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~ 28 (353)
+-|+||||++--|.+.|.+ .|.+
T Consensus 7 ~sgsGKttla~~l~~~l~~-~~~~ 29 (179)
T cd02028 7 PSGSGKTTFAKKLSNQLRV-NGIG 29 (179)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCC
Confidence 5699999999999999864 3444
No 172
>PRK13975 thymidylate kinase; Provisional
Probab=50.88 E-value=9.2 Score=33.13 Aligned_cols=18 Identities=39% Similarity=0.362 Sum_probs=15.9
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||.+--|++.|+
T Consensus 10 ~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 10 IDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999998885
No 173
>PRK13974 thymidylate kinase; Provisional
Probab=50.65 E-value=19 Score=32.63 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=26.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCC----ceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHK----NTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk----~~~~~lRqPS~GP 40 (353)
+-|+||||.+--|.+.|.. -|+ ..+...|+|.-.|
T Consensus 11 ~dGsGKsT~~~~l~~~l~~-~g~~~~~~~~~~~~~p~~~~ 49 (212)
T PRK13974 11 IDGCGKTTQIDHLSKWLPS-SGLMPKGAKLIITREPGGTL 49 (212)
T ss_pred CCCCCHHHHHHHHHHHHHh-cCccccCCeeeeeeCCCCCc
Confidence 5699999999999999863 354 3567789997544
No 174
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=49.87 E-value=9 Score=35.33 Aligned_cols=19 Identities=47% Similarity=0.515 Sum_probs=16.8
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
+-|.||||+..-|+|+|+-
T Consensus 10 ~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 10 FMGAGKSTIGRALAKALNL 28 (172)
T ss_pred CCCCCHhHHHHHHHHHcCC
Confidence 5799999999999999863
No 175
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=49.84 E-value=9.2 Score=33.36 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++-.|+.-|+
T Consensus 3 ~sGsGKSTla~~la~~l~ 20 (163)
T PRK11545 3 VSGSGKSAVASEVAHQLH 20 (163)
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 679999999988877764
No 176
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=49.66 E-value=26 Score=37.41 Aligned_cols=80 Identities=25% Similarity=0.488 Sum_probs=49.5
Q ss_pred ccccccccccccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHHHhhhhcCCCceec
Q psy7967 125 GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSNGLKFGVPVVVK 204 (353)
Q Consensus 125 g~EkF~nik~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~~gvP~vv~ 204 (353)
|-|-|-++..|-+-.. |.++||.+++--.| | |+ .++ |+-++.++||.+|+
T Consensus 64 GHeAFt~mRaRGa~vt-DIaILVVa~dDGv~----p-------------QT-iEA-----------I~hak~a~vP~iVA 113 (509)
T COG0532 64 GHEAFTAMRARGASVT-DIAILVVAADDGVM----P-------------QT-IEA-----------INHAKAAGVPIVVA 113 (509)
T ss_pred cHHHHHHHHhcCCccc-cEEEEEEEccCCcc----h-------------hH-HHH-----------HHHHHHCCCCEEEE
Confidence 4566888887777666 55666665552111 1 22 222 34466789999999
Q ss_pred CcceecHHHHHhhhhcCCCcCCCCCCCHH-HHhhhhcCCCCCCceeeeee
Q psy7967 205 GKREFSIIQRRRLLRLDINRTDPNTLTPE-EITKFVRLNINPDTISWRRV 253 (353)
Q Consensus 205 g~R~fs~~~~rrl~klgInk~~p~~lt~e-~i~~~n~L~IDp~~I~WkRv 253 (353)
+||-|--+-.++ ..++..+.+|.|+. |.|.
T Consensus 114 -----------------iNKiDk~~~np~~v~~el~~~gl~~E~--~gg~ 144 (509)
T COG0532 114 -----------------INKIDKPEANPDKVKQELQEYGLVPEE--WGGD 144 (509)
T ss_pred -----------------EecccCCCCCHHHHHHHHHHcCCCHhh--cCCc
Confidence 898774444443 44567777888775 5555
No 177
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=49.42 E-value=22 Score=30.78 Aligned_cols=32 Identities=38% Similarity=0.342 Sum_probs=25.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|-|.||||++.-|+..+.. .|.+..+.-=.|+
T Consensus 7 ~~GsGKTt~~~~l~~~~~~-~g~~v~ii~~D~~ 38 (148)
T cd03114 7 VPGAGKSTLIDALITALRA-RGKRVAVLAIDPS 38 (148)
T ss_pred CCCCcHHHHHHHHHHHHHH-CCCEEEEEEeCCC
Confidence 5799999999999999964 5887766555664
No 178
>PRK06762 hypothetical protein; Provisional
Probab=49.28 E-value=11 Score=31.97 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.2
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
+.|+||||.+.=|.+.+
T Consensus 10 ~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 10 NSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999998777766
No 179
>PRK04182 cytidylate kinase; Provisional
Probab=49.18 E-value=8.8 Score=32.33 Aligned_cols=18 Identities=44% Similarity=0.591 Sum_probs=14.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+.|+||||++.-|++.|+
T Consensus 8 ~~GsGKstia~~la~~lg 25 (180)
T PRK04182 8 PPGSGKTTVARLLAEKLG 25 (180)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 579999999988877653
No 180
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=49.14 E-value=10 Score=32.22 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++.-|++.++
T Consensus 11 ~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 11 GPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999988887653
No 181
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=49.02 E-value=31 Score=29.80 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=31.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGG 47 (353)
|.+.||||+..-|..-|.+ .|.++.+-..-.--.+.|..-|-
T Consensus 8 ~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~g~~~~d~pG~ 49 (140)
T PF03205_consen 8 PKNSGKTTLIRKLINELKR-RGYRVAVIKHTDHGQFEIDPPGT 49 (140)
T ss_dssp STTSSHHHHHHHHHHHHHH-TT--EEEEEE-STTSTTCSTTCH
T ss_pred CCCCCHHHHHHHHHHHHhH-cCCceEEEEEccCCCcccCCCCc
Confidence 5689999999999999974 68888777776666677777766
No 182
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=48.99 E-value=16 Score=34.85 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=21.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
..|+||||.+--|.+.|-+ .|+++.+
T Consensus 31 LSGsGKSTiA~ale~~L~~-~G~~~y~ 56 (197)
T COG0529 31 LSGSGKSTIANALEEKLFA-KGYHVYL 56 (197)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCeEEE
Confidence 4699999999999999964 6777664
No 183
>KOG1533|consensus
Probab=48.96 E-value=17 Score=36.17 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=22.8
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
-|-|+||||-..|+.|-|. ++|.++.+
T Consensus 9 GPPgSGKsTYc~g~~~fls-~~gr~~~v 35 (290)
T KOG1533|consen 9 GPPGSGKSTYCNGMSQFLS-AIGRPVAV 35 (290)
T ss_pred cCCCCCccchhhhHHHHHH-HhCCceEE
Confidence 3789999999999999997 67887643
No 184
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=48.30 E-value=10 Score=32.54 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||.+.-|++.++
T Consensus 7 ~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 679999999988887664
No 185
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=48.24 E-value=16 Score=32.91 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=20.0
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
.|.||||++..|.+-|.+ .|.++..
T Consensus 11 sGsGKtTlA~~L~~~L~~-~g~~~~~ 35 (156)
T PF01583_consen 11 SGSGKTTLARALERRLFA-RGIKVYL 35 (156)
T ss_dssp TTSSHHHHHHHHHHHHHH-TTS-EEE
T ss_pred CCCCHHHHHHHHHHHHHH-cCCcEEE
Confidence 599999999999999974 5777653
No 186
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=47.26 E-value=19 Score=36.32 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=25.2
Q ss_pred hHHHHHHhhh---hcCCCceecCcceecHHHHHhhhhcCCC
Q psy7967 186 NLEKHVSNGL---KFGVPVVVKGKREFSIIQRRRLLRLDIN 223 (353)
Q Consensus 186 nl~~hi~n~~---~~gvP~vv~g~R~fs~~~~rrl~klgIn 223 (353)
.+..-|+.++ .+|.|++|.|+|. ...|+||||+
T Consensus 9 ~~~~~~~~l~~~~~~~~~ilveg~~d-----~~~l~~lgi~ 44 (360)
T PRK14719 9 KLLLIIDDLKLLAEKGIPILVEGPND-----ILSLKNLKIN 44 (360)
T ss_pred HHHHHHHHHHHhhhCCCEEEEEcchH-----HHHHHHcCCC
Confidence 3445566666 5789999999985 5678999996
No 187
>KOG0635|consensus
Probab=47.14 E-value=17 Score=34.30 Aligned_cols=24 Identities=46% Similarity=0.553 Sum_probs=19.8
Q ss_pred CCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
.|+||||++-.|.|+|.+ .||-+.
T Consensus 40 SgSGKStlACaL~q~L~q-rgkl~Y 63 (207)
T KOG0635|consen 40 SGSGKSTLACALSQALLQ-RGKLTY 63 (207)
T ss_pred CCCCchhHHHHHHHHHHh-cCceEE
Confidence 489999999999999974 566553
No 188
>PRK06526 transposase; Provisional
Probab=47.12 E-value=14 Score=35.09 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=19.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|-|.|||+++.+|+..+. +.|+++
T Consensus 106 p~GtGKThLa~al~~~a~-~~g~~v 129 (254)
T PRK06526 106 PPGTGKTHLAIGLGIRAC-QAGHRV 129 (254)
T ss_pred CCCCchHHHHHHHHHHHH-HCCCch
Confidence 779999999999998885 346654
No 189
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=46.80 E-value=18 Score=32.66 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=17.9
Q ss_pred CCCCCcchhHHHHHHHHHhhc--CCceeeEe
Q psy7967 5 PLGEGKSTTTIGLAQALAAHK--HKNTFACV 33 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~l--gk~~~~~l 33 (353)
.+|+|||||.+...--|-.+. ..+.|++|
T Consensus 21 ~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~l 51 (315)
T PF00580_consen 21 GAGSGKTTTLLERIAYLLYEGGVPPERILVL 51 (315)
T ss_dssp -TTSSHHHHHHHHHHHHHHTSSSTGGGEEEE
T ss_pred CCCCCchHHHHHHHHHhhccccCChHHheec
Confidence 489999999988754442222 23446555
No 190
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.64 E-value=19 Score=37.90 Aligned_cols=29 Identities=34% Similarity=0.399 Sum_probs=20.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV 33 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l 33 (353)
|-|.|||||..-|+..+....|.+.+..+
T Consensus 264 pnGvGKTTTiaKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 264 PTGVGKTTTTAKLAARCVMRHGASKVALL 292 (484)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 67999999999999877534454334333
No 191
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=46.59 E-value=12 Score=32.61 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=19.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
+-|.||||.+--|.+-+ | +.+++||.
T Consensus 7 ~~GsGKSTl~~~L~~~~----~---~~~~~Ep~ 32 (193)
T cd01673 7 NIGAGKSTLAKELAEHL----G---YEVVPEPV 32 (193)
T ss_pred CCCCCHHHHHHHHHHHh----C---Cccccccc
Confidence 46999999998887654 3 34679995
No 192
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=46.33 E-value=13 Score=35.59 Aligned_cols=25 Identities=44% Similarity=0.479 Sum_probs=17.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV 33 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l 33 (353)
|-|.||||.| |+|+.|+|-+++.-+
T Consensus 12 ~IG~GKSTLa----~~La~~l~~~~~~E~ 36 (216)
T COG1428 12 MIGAGKSTLA----QALAEHLGFKVFYEL 36 (216)
T ss_pred ccccCHHHHH----HHHHHHhCCceeeec
Confidence 6799999965 666667776655443
No 193
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=45.90 E-value=9.9 Score=33.20 Aligned_cols=36 Identities=31% Similarity=0.375 Sum_probs=27.5
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
-|.|.||||+.--|.+.+..+.+.-..-+-|.|-.|
T Consensus 9 Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~ 44 (183)
T PF00625_consen 9 GPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPG 44 (183)
T ss_dssp SSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTT
T ss_pred CCCCCCHHHHHHHHHHhcccccccceeecccCCccc
Confidence 489999999999999888655655566778888665
No 194
>PRK05541 adenylylsulfate kinase; Provisional
Probab=45.73 E-value=22 Score=30.63 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=18.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|-|.||||++.-|.+.|.. -+..+
T Consensus 15 ~~GsGKst~a~~l~~~l~~-~~~~~ 38 (176)
T PRK05541 15 LAGSGKTTIAKALYERLKL-KYSNV 38 (176)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 5699999999999988863 34443
No 195
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=45.48 E-value=11 Score=34.95 Aligned_cols=19 Identities=47% Similarity=0.517 Sum_probs=15.6
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
..|+||||+...|++.|+.
T Consensus 3 VsG~GKStvg~~lA~~lg~ 21 (161)
T COG3265 3 VSGSGKSTVGSALAERLGA 21 (161)
T ss_pred CCccCHHHHHHHHHHHcCC
Confidence 4799999999888887753
No 196
>PRK14974 cell division protein FtsY; Provisional
Probab=45.48 E-value=20 Score=35.88 Aligned_cols=25 Identities=32% Similarity=0.246 Sum_probs=20.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|-|.|||||..-|+..|.. .|+++.
T Consensus 148 ~~GvGKTTtiakLA~~l~~-~g~~V~ 172 (336)
T PRK14974 148 VNGTGKTTTIAKLAYYLKK-NGFSVV 172 (336)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCeEE
Confidence 6799999999999999864 466543
No 197
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=45.01 E-value=14 Score=34.35 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=16.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++..+++.|.
T Consensus 50 ppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 50 NPGTGKTTVARILGKLFK 67 (261)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 789999999999999885
No 198
>PRK00889 adenylylsulfate kinase; Provisional
Probab=44.93 E-value=21 Score=30.68 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=18.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~ 28 (353)
+-|.||||++.-|++.|.. .|.+
T Consensus 12 ~~GsGKST~a~~la~~l~~-~g~~ 34 (175)
T PRK00889 12 LSGAGKTTIARALAEKLRE-AGYP 34 (175)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCe
Confidence 4699999999999999963 3443
No 199
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=44.70 E-value=21 Score=33.28 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=20.1
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|+-|-||||.++|++..... .|.++.
T Consensus 29 ~g~GkGKtt~a~g~a~ra~g-~G~~V~ 54 (191)
T PRK05986 29 TGNGKGKSTAAFGMALRAVG-HGKKVG 54 (191)
T ss_pred CCCCCChHHHHHHHHHHHHH-CCCeEE
Confidence 78899999999999876543 466653
No 200
>PRK15453 phosphoribulokinase; Provisional
Probab=44.60 E-value=18 Score=35.94 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=17.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHK 27 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk 27 (353)
+.|+||||++-.|.+.|+ +.+.
T Consensus 13 ~SGsGKTTva~~l~~if~-~~~~ 34 (290)
T PRK15453 13 SSGAGTTTVKRAFEKIFR-RENI 34 (290)
T ss_pred CCCCCHHHHHHHHHHHHh-hcCC
Confidence 469999999999999886 4454
No 201
>PRK06217 hypothetical protein; Validated
Probab=44.48 E-value=11 Score=32.90 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=23.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee---eEeeCCCCCCccccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF---ACVRQPSQGPTFGIK 45 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~---~~lRqPS~GP~FGiK 45 (353)
+-|+||||++.-|++.|+ ...+ ...++|+ ++.|+.+
T Consensus 9 ~~GsGKSTla~~L~~~l~----~~~~~~D~~~~~~~-~~~~~~~ 47 (183)
T PRK06217 9 ASGSGTTTLGAALAERLD----IPHLDTDDYFWLPT-DPPFTTK 47 (183)
T ss_pred CCCCCHHHHHHHHHHHcC----CcEEEcCceeeccC-CCCcccc
Confidence 569999999887777664 3322 3456775 3445554
No 202
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=44.29 E-value=16 Score=34.95 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.6
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+-|+||||++.-|.+-|+
T Consensus 16 ~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 16 GSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 569999999999988875
No 203
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=44.17 E-value=15 Score=37.89 Aligned_cols=114 Identities=22% Similarity=0.250 Sum_probs=59.1
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCC---CCCCcccccCchhhhh-hhh-ccchhhhhhhhccCCceeee
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQP---SQGPTFGIKGSHMALL-LSG-LTGAMAVLLKDAVQPNLMQT 75 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqP---S~GP~FGiKGGama~l-l~~-~~Ga~~vll~da~~pNL~qt 75 (353)
||=|.-+.|||++|.||++.|. ..|.++.. . .| |.+-.-...|+-++-. ++. ...+. -+.+.++|=+...
T Consensus 3 I~GT~t~vGKT~v~~~L~~~l~-~~G~~v~~-f-Kp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~--~~~~~~nPv~lk~ 77 (475)
T TIGR00313 3 VVGTTSSAGKSTLTAGLCRILA-RRGYRVAP-F-KSQNMSLNSFVTKEGGEIAIAQATQALAAGI--EPSVHMNPILLKP 77 (475)
T ss_pred EeeCCCCCCHHHHHHHHHHHHH-hCCCeEEE-E-CCcccccCccccCCCchhHHHHHHHHHhCCC--CchhccCCEEeCc
Confidence 4568899999999999999996 46877542 2 22 2221111223432111 110 01111 2335556655432
Q ss_pred e--cCcceeeecccchhh----hhcch-hHHHHHHH---HhhccCCCeEEeecc
Q psy7967 76 L--EGTPVMVHAGPFANI----AHGCS-SVVADLIA---LKLVGAEGYVVTEAG 119 (353)
Q Consensus 76 l--eg~p~~iH~gpfANi----ahg~~-s~~ad~~a---l~l~g~~~~vvTeAG 119 (353)
- ...|++++|-|.++. ++.-+ .+..+++. .++....||||=|..
T Consensus 78 ~~~~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~~~~D~vIIEGa 131 (475)
T TIGR00313 78 KGNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILAREYDYVVIEGA 131 (475)
T ss_pred CCCCcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 0 135778888776432 11111 34444332 134456799998873
No 204
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=44.12 E-value=33 Score=29.86 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=49.6
Q ss_pred CeEEeecccccccccccccccccccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHH
Q psy7967 112 GYVVTEAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHV 191 (353)
Q Consensus 112 ~~vvTeAGfg~dlg~EkF~nik~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi 191 (353)
.|=|+- .|.+.+.|+|... .....||+|.+-+... .....++ ++.+.+
T Consensus 31 G~eVi~--LG~~vp~e~i~~~---a~~~~~d~V~lS~~~~-----------------------~~~~~~~----~~~~~L 78 (137)
T PRK02261 31 GFEVIN--LGVMTSQEEFIDA---AIETDADAILVSSLYG-----------------------HGEIDCR----GLREKC 78 (137)
T ss_pred CCEEEE--CCCCCCHHHHHHH---HHHcCCCEEEEcCccc-----------------------cCHHHHH----HHHHHH
Confidence 444443 3789999999663 2345678775533211 1112222 222223
Q ss_pred HhhhhcCCCceecCccee----cHHHHHhhhhcCCCc-CCCCCCCHHHHh
Q psy7967 192 SNGLKFGVPVVVKGKREF----SIIQRRRLLRLDINR-TDPNTLTPEEIT 236 (353)
Q Consensus 192 ~n~~~~gvP~vv~g~R~f----s~~~~rrl~klgInk-~~p~~lt~e~i~ 236 (353)
+......+++++.|.=.. .+.-.++|+++|+.. |+|++ +.+++-
T Consensus 79 ~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~-~~~~i~ 127 (137)
T PRK02261 79 IEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT-DPEEAI 127 (137)
T ss_pred HhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCC-CHHHHH
Confidence 222223577766664322 245568999999865 76666 555554
No 205
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.04 E-value=20 Score=38.23 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=24.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|-|+|||||.-.+.+-++. ..+.|+++=.|=
T Consensus 266 PTGSGKTTTLY~~L~~ln~--~~~nI~TiEDPV 296 (500)
T COG2804 266 PTGSGKTTTLYAALSELNT--PERNIITIEDPV 296 (500)
T ss_pred CCCCCHHHHHHHHHHHhcC--CCceEEEeeCCe
Confidence 7899999999988888864 344488888773
No 206
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=43.68 E-value=15 Score=32.85 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=14.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|.+.|.
T Consensus 14 ~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 14 GSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 679999998877766553
No 207
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=43.65 E-value=14 Score=30.32 Aligned_cols=18 Identities=44% Similarity=0.514 Sum_probs=15.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||.+.-|++.|+
T Consensus 7 ~~GsGKstla~~la~~l~ 24 (154)
T cd00464 7 MMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999988887764
No 208
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=43.55 E-value=12 Score=34.70 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=14.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+-|.||||+++.|+.-++
T Consensus 7 tiGCGKTTva~aL~~LFg 24 (168)
T PF08303_consen 7 TIGCGKTTVALALSNLFG 24 (168)
T ss_pred CCCcCHHHHHHHHHHHcC
Confidence 469999999988876654
No 209
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=43.10 E-value=21 Score=31.96 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=18.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|.|.|||.+++++++.+-. .|+.+
T Consensus 55 ~~G~GKThLa~ai~~~~~~-~g~~v 78 (178)
T PF01695_consen 55 PPGTGKTHLAVAIANEAIR-KGYSV 78 (178)
T ss_dssp STTSSHHHHHHHHHHHHHH-TT--E
T ss_pred hHhHHHHHHHHHHHHHhcc-CCcce
Confidence 5799999999999998864 46554
No 210
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=42.98 E-value=22 Score=32.87 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=22.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
|-|+||||+.--|.+.+... ...++++=+|
T Consensus 135 ~tGSGKTT~l~all~~i~~~--~~~iv~iEd~ 164 (270)
T PF00437_consen 135 PTGSGKTTLLNALLEEIPPE--DERIVTIEDP 164 (270)
T ss_dssp STTSSHHHHHHHHHHHCHTT--TSEEEEEESS
T ss_pred CCccccchHHHHHhhhcccc--ccceEEeccc
Confidence 56999999999998877542 3567776654
No 211
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=42.11 E-value=25 Score=28.22 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=16.1
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++..++..+..
T Consensus 7 ~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 7 PTGSGKTTLALQLALNIAT 25 (165)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5799999999999887754
No 212
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=42.09 E-value=28 Score=34.75 Aligned_cols=32 Identities=28% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|-|.||||++--|.+.|.. .|+++.+.-=.||
T Consensus 64 ~~GaGKSTl~~~l~~~l~~-~g~~v~vi~~Dp~ 95 (332)
T PRK09435 64 VPGVGKSTFIEALGMHLIE-QGHKVAVLAVDPS 95 (332)
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCeEEEEEeCCC
Confidence 6799999999999999974 5887766666665
No 213
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=41.94 E-value=23 Score=38.14 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=21.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
|.|.|||||.+.+...+-+ .|+++.+|
T Consensus 181 pPGTGKT~t~~~ii~~~~~-~g~~VLv~ 207 (637)
T TIGR00376 181 PPGTGKTRTLVELIRQLVK-RGLRVLVT 207 (637)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCCEEEE
Confidence 7899999999999877753 57765554
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=41.29 E-value=25 Score=33.44 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=19.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|.|.|||+++..++..|.. .|+.+
T Consensus 107 ~~GtGKThLa~aia~~l~~-~g~~v 130 (244)
T PRK07952 107 KPGTGKNHLAAAICNELLL-RGKSV 130 (244)
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCeE
Confidence 6799999999999999964 46554
No 215
>PLN02348 phosphoribulokinase
Probab=41.20 E-value=22 Score=36.74 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=17.0
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
+-|+||||++..|.+.|+.
T Consensus 57 ~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 57 DSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 5799999999999999974
No 216
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=40.92 E-value=21 Score=33.33 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=16.8
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++..+++.+..
T Consensus 44 p~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 44 PPGSGKTAAVRALARELYG 62 (337)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 7899999999999998853
No 217
>COG4195 Phage-related replication protein [General function prediction only]
Probab=40.91 E-value=24 Score=33.81 Aligned_cols=39 Identities=36% Similarity=0.504 Sum_probs=28.1
Q ss_pred cchhHHHHHHHHhhccCCCeEEeecccccccccccccccccccCCCCCCeEE
Q psy7967 94 GCSSVVADLIALKLVGAEGYVVTEAGFGSDIGMEKFFNIKCRTSGKIPDAVV 145 (353)
Q Consensus 94 g~~s~~ad~~al~l~g~~~~vvTeAGfg~dlg~EkF~nik~r~~g~~p~a~v 145 (353)
|.+-..|+.++-+| ++|||.++| .|++-|+.|+.|+-++
T Consensus 120 G~dR~~aa~i~~~L--------~~aGF~a~L-----~~~~~~LaG~hpnNi~ 158 (208)
T COG4195 120 GTDRELAAHIARAL--------QLAGFSAEL-----ANSKHRLAGLHPNNIV 158 (208)
T ss_pred CccHHHHHHHHHHH--------hhCCccHHh-----hcCCCcCCCCCccccc
Confidence 45555666666655 367888777 6788899999999874
No 218
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.80 E-value=25 Score=36.73 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=19.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|-|.|||||+.=|+..+....|+++.
T Consensus 231 ptGvGKTTtaaKLA~~~~~~~G~~V~ 256 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKYFLHMGKSVS 256 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 78999999999999765333466553
No 219
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=40.65 E-value=23 Score=33.65 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=21.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
|.|.|||.++++|+..|. +.|.. +..+.
T Consensus 113 ~~G~GKThLa~Ai~~~l~-~~g~s-v~f~~ 140 (254)
T COG1484 113 PPGVGKTHLAIAIGNELL-KAGIS-VLFIT 140 (254)
T ss_pred CCCCcHHHHHHHHHHHHH-HcCCe-EEEEE
Confidence 789999999999999997 44554 44444
No 220
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=40.52 E-value=23 Score=37.44 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|-|+|||||.-.+...++. . ...++.+-.|-
T Consensus 324 ~tGSGKTTtl~a~l~~~~~-~-~~~i~tiEdpv 354 (564)
T TIGR02538 324 PTGSGKTVSLYTALNILNT-E-EVNISTAEDPV 354 (564)
T ss_pred CCCCCHHHHHHHHHHhhCC-C-CceEEEecCCc
Confidence 6799999998887777752 2 34588888773
No 221
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=40.36 E-value=37 Score=31.03 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=30.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKG 46 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKG 46 (353)
|.|+||||+..-|..-|.. .|.+ ++.+....-|..+--.|
T Consensus 14 ~sgsGKTTLi~~li~~l~~-~g~~-vg~Ik~~~~~~~~d~~g 53 (173)
T PRK10751 14 WSGTGKTTLLKKLIPALCA-RGIR-PGLIKHTHHDMDVDKPG 53 (173)
T ss_pred CCCChHHHHHHHHHHHHhh-cCCe-EEEEEEcCCCcccCCCC
Confidence 6799999999999999964 5766 48888766665554333
No 222
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=40.20 E-value=20 Score=34.82 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=18.4
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
-|||||.++ .|.=++.+..|+.+-+
T Consensus 99 TGEGKTli~-~l~a~~~AL~G~~V~v 123 (266)
T PF07517_consen 99 TGEGKTLIA-ALPAALNALQGKGVHV 123 (266)
T ss_dssp TTSHHHHHH-HHHHHHHHTTSS-EEE
T ss_pred CCCCcHHHH-HHHHHHHHHhcCCcEE
Confidence 499999887 4666888878887643
No 223
>KOG2878|consensus
Probab=39.89 E-value=23 Score=34.77 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=21.2
Q ss_pred CCCCCCcchhHHHHHHHHHhhc-CCceeeE
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHK-HKNTFAC 32 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~l-gk~~~~~ 32 (353)
-|-|+||||+++.|---|.++. +..+++.
T Consensus 38 gPQGsGKstl~~ald~~lt~Ky~~E~s~~~ 67 (282)
T KOG2878|consen 38 GPQGSGKSTLVFALDYKLTKKYIQEYSSAT 67 (282)
T ss_pred CCCCCCceeehhhhHHHHHHHhccccceEE
Confidence 4889999999999988777653 3334443
No 224
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=39.88 E-value=25 Score=33.42 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=22.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|-|+||||+...|.+.+.. . ...++.+=+|.
T Consensus 88 ~tGSGKTT~l~all~~i~~-~-~~~iitiEdp~ 118 (264)
T cd01129 88 PTGSGKTTTLYSALSELNT-P-EKNIITVEDPV 118 (264)
T ss_pred CCCCcHHHHHHHHHhhhCC-C-CCeEEEECCCc
Confidence 6799999999999888853 2 33466776664
No 225
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=39.54 E-value=26 Score=31.34 Aligned_cols=17 Identities=41% Similarity=0.440 Sum_probs=15.6
Q ss_pred CCCCcchhHHHHHHHHH
Q psy7967 6 LGEGKSTTTIGLAQALA 22 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~ 22 (353)
-|.|||+|+.-|.+.+.
T Consensus 32 TGsGKS~~~~~ll~~l~ 48 (229)
T PF01935_consen 32 TGSGKSNTVKVLLEELL 48 (229)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 49999999999999996
No 226
>PRK08084 DNA replication initiation factor; Provisional
Probab=39.48 E-value=25 Score=32.50 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=19.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|.|.|||++...++..+.+ .|+++
T Consensus 53 p~G~GKThLl~a~~~~~~~-~~~~v 76 (235)
T PRK08084 53 REGAGRSHLLHAACAELSQ-RGRAV 76 (235)
T ss_pred CCCCCHHHHHHHHHHHHHh-CCCeE
Confidence 7899999999999888764 35443
No 227
>PRK13946 shikimate kinase; Provisional
Probab=39.42 E-value=16 Score=32.22 Aligned_cols=18 Identities=44% Similarity=0.506 Sum_probs=15.3
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+.|.||||++.-|++.|+
T Consensus 18 ~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 18 LMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 469999999998888874
No 228
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=39.32 E-value=33 Score=30.13 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=18.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
.+|+||||+-.-|.+ . ..-|.+..+-.-
T Consensus 8 fLGsGKTTli~~ll~-~-~~~~~~~~vI~n 35 (178)
T PF02492_consen 8 FLGSGKTTLINHLLK-R-NRQGERVAVIVN 35 (178)
T ss_dssp STTSSHHHHHHHHHH-H-HTTTS-EEEEEC
T ss_pred CCCCCHHHHHHHHHH-H-hcCCceeEEEEc
Confidence 489999999888887 3 234666554444
No 229
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=39.31 E-value=19 Score=31.21 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||.+.-|.+.+.
T Consensus 10 ~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 10 GSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCCCCHHHHHHHHHHhhC
Confidence 679999999998877763
No 230
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=39.24 E-value=26 Score=34.68 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=18.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~ 28 (353)
+.|+||||++-.|.+.|.+ .|.+
T Consensus 7 ~SGSGKTTv~~~l~~~l~~-~g~~ 29 (277)
T cd02029 7 SSGAGTTTVKRAFEHIFAR-EGIH 29 (277)
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCc
Confidence 5699999999999999964 5544
No 231
>PRK01184 hypothetical protein; Provisional
Probab=39.23 E-value=15 Score=31.76 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=14.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
|-|+||||++. +++ .+|...+.
T Consensus 9 ~~GsGKsT~a~-~~~----~~g~~~i~ 30 (184)
T PRK01184 9 MPGSGKGEFSK-IAR----EMGIPVVV 30 (184)
T ss_pred CCCCCHHHHHH-HHH----HcCCcEEE
Confidence 67999999875 443 34555544
No 232
>PRK07261 topology modulation protein; Provisional
Probab=38.92 E-value=17 Score=31.89 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=13.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||.+.=|++-+
T Consensus 8 ~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 8 YSGSGKSTLARKLSQHY 24 (171)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999987776654
No 233
>COG0645 Predicted kinase [General function prediction only]
Probab=38.68 E-value=13 Score=34.37 Aligned_cols=18 Identities=56% Similarity=0.673 Sum_probs=16.2
Q ss_pred CCCCcchhHHHHHHHHHh
Q psy7967 6 LGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~ 23 (353)
-|.||||++.+|++.|++
T Consensus 10 ~GsGKstlA~~l~~~lgA 27 (170)
T COG0645 10 PGSGKSTLARGLAELLGA 27 (170)
T ss_pred CCccHhHHHHHHHhhcCc
Confidence 389999999999999875
No 234
>PRK06893 DNA replication initiation factor; Validated
Probab=38.34 E-value=27 Score=32.03 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=19.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|.|.|||+++..++..+.++ ++++
T Consensus 47 ~~G~GKThL~~ai~~~~~~~-~~~~ 70 (229)
T PRK06893 47 GKSSGKSHLLKAVSNHYLLN-QRTA 70 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCCe
Confidence 77999999999999888643 5443
No 235
>PRK13948 shikimate kinase; Provisional
Probab=38.29 E-value=16 Score=33.04 Aligned_cols=18 Identities=39% Similarity=0.470 Sum_probs=14.9
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+.|.||||+..-|++.|+
T Consensus 18 ~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 18 FMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 469999999988887764
No 236
>PRK08727 hypothetical protein; Validated
Probab=38.25 E-value=27 Score=32.21 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|.|.|||+++..++..+..+ |+++
T Consensus 49 ~~G~GKThL~~a~~~~~~~~-~~~~ 72 (233)
T PRK08727 49 PAGTGKTHLALALCAAAEQA-GRSS 72 (233)
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 68999999999999888643 6543
No 237
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=38.13 E-value=18 Score=33.51 Aligned_cols=18 Identities=44% Similarity=0.660 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-|++-|+
T Consensus 10 ~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 10 PSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 899999999988877653
No 238
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=37.82 E-value=29 Score=34.51 Aligned_cols=31 Identities=32% Similarity=0.312 Sum_probs=25.5
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 3 PTPLGEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 3 PTP~GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
.|==|.|||++++-|++.|.+ .|.++.+--|
T Consensus 57 i~vGGtGKTP~v~~L~~~l~~-~g~~~~ilsR 87 (325)
T PRK00652 57 ITVGGTGKTPVVIALAEQLQA-RGLKPGVVSR 87 (325)
T ss_pred eeCCCCChHHHHHHHHHHHHH-CCCeEEEECC
Confidence 455699999999999999974 5888777666
No 239
>PRK05439 pantothenate kinase; Provisional
Probab=37.78 E-value=32 Score=34.18 Aligned_cols=19 Identities=37% Similarity=0.326 Sum_probs=16.2
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++--|.+.|.+
T Consensus 94 ~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 94 SVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5699999999999888864
No 240
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=37.77 E-value=20 Score=30.57 Aligned_cols=18 Identities=50% Similarity=0.619 Sum_probs=15.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+-|.||||++.-|++.|+
T Consensus 10 ~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 10 ARGCGKTTVGMALAQALG 27 (171)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 469999999988888775
No 241
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=37.69 E-value=19 Score=32.27 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.4
Q ss_pred CCCCCcchhHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQA 20 (353)
Q Consensus 5 P~GEGKsTttiGL~qa 20 (353)
|.|.||||++.-|.+.
T Consensus 22 ~sG~GKStlal~L~~~ 37 (149)
T cd01918 22 PSGIGKSELALELIKR 37 (149)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 7899999999877654
No 242
>PRK10436 hypothetical protein; Provisional
Probab=37.58 E-value=28 Score=36.28 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=24.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
|-|+|||||.-.+.+.++. .+ +.++.+=.|-==
T Consensus 226 pTGSGKTTtL~a~l~~~~~-~~-~~i~TiEDPvE~ 258 (462)
T PRK10436 226 PTGSGKTVTLYSALQTLNT-AQ-INICSVEDPVEI 258 (462)
T ss_pred CCCCChHHHHHHHHHhhCC-CC-CEEEEecCCccc
Confidence 5599999999888777764 33 457888877543
No 243
>KOG3347|consensus
Probab=37.46 E-value=19 Score=33.71 Aligned_cols=21 Identities=48% Similarity=0.597 Sum_probs=15.6
Q ss_pred CCCCCCCCCcchhHHHHHHHHH
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~ 22 (353)
||=|| |.||||++--|+..++
T Consensus 12 vtGTP-G~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 12 VTGTP-GTGKSTLAERLAEKTG 32 (176)
T ss_pred EeCCC-CCCchhHHHHHHHHhC
Confidence 34566 9999999887776553
No 244
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=37.45 E-value=31 Score=31.71 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=18.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
+-|+||||.+.-|++.|.. .|.++
T Consensus 7 ~pGSGKST~a~~La~~l~~-~~~~v 30 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKLSE-KNIDV 30 (249)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCce
Confidence 4699999999999999863 35544
No 245
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=37.44 E-value=60 Score=27.11 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=46.2
Q ss_pred CeEEeecccccccccccccccccccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHH
Q psy7967 112 GYVVTEAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHV 191 (353)
Q Consensus 112 ~~vvTeAGfg~dlg~EkF~nik~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi 191 (353)
.|-|.-- |.+.+.|+|... .....||+++|..+... ..+.++ .+.+.+
T Consensus 27 G~~vi~l--G~~vp~e~~~~~---a~~~~~d~V~iS~~~~~-----------------------~~~~~~----~~~~~L 74 (122)
T cd02071 27 GFEVIYT--GLRQTPEEIVEA---AIQEDVDVIGLSSLSGG-----------------------HMTLFP----EVIELL 74 (122)
T ss_pred CCEEEEC--CCCCCHHHHHHH---HHHcCCCEEEEcccchh-----------------------hHHHHH----HHHHHH
Confidence 4544433 678889988542 23457888877554321 111122 222222
Q ss_pred HhhhhcCCCceecCcceecHHHHHhhhhcCCCcC-CCCC
Q psy7967 192 SNGLKFGVPVVVKGKREFSIIQRRRLLRLDINRT-DPNT 229 (353)
Q Consensus 192 ~n~~~~gvP~vv~g~R~fs~~~~rrl~klgInk~-~p~~ 229 (353)
+..-...+++++.| +.. +.+..+|+.+|++.| +|.+
T Consensus 75 ~~~~~~~i~i~~GG-~~~-~~~~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 75 RELGAGDILVVGGG-IIP-PEDYELLKEMGVAEIFGPGT 111 (122)
T ss_pred HhcCCCCCEEEEEC-CCC-HHHHHHHHHCCCCEEECCCC
Confidence 23212256765655 433 566899999999885 4444
No 246
>PRK03846 adenylylsulfate kinase; Provisional
Probab=37.38 E-value=31 Score=30.63 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=17.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~ 28 (353)
+-|+||||++.-|.+.|.. .|..
T Consensus 32 ~~GsGKSTla~~l~~~l~~-~~~~ 54 (198)
T PRK03846 32 LSGSGKSTVAGALEEALHE-LGVS 54 (198)
T ss_pred CCCCCHHHHHHHHHHHHHh-CCCC
Confidence 5699999999888887753 3443
No 247
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=37.32 E-value=24 Score=27.17 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||+..-+.+.+.
T Consensus 27 ~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 27 PPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 679999999888887774
No 248
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=37.17 E-value=26 Score=33.49 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHK 27 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk 27 (353)
|.|.||||++..+++.+. .+|.
T Consensus 66 ~pGTGKT~lA~~ia~~l~-~~g~ 87 (284)
T TIGR02880 66 NPGTGKTTVALRMAQILH-RLGY 87 (284)
T ss_pred CCCCCHHHHHHHHHHHHH-HcCC
Confidence 789999999999999996 3554
No 249
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=36.98 E-value=19 Score=30.88 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=14.9
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||.+.-|++.++
T Consensus 7 ~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 7 PPGSGKGTQAERLAKKYG 24 (194)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 579999999988887753
No 250
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=36.90 E-value=24 Score=28.95 Aligned_cols=17 Identities=47% Similarity=0.602 Sum_probs=15.4
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.|||++..-|++.+
T Consensus 7 ~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 7 PPGTGKTTLARELAALL 23 (139)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999999998887
No 251
>PRK09183 transposase/IS protein; Provisional
Probab=36.88 E-value=30 Score=32.80 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=18.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|-|.|||+++..|+..+. ..|+++
T Consensus 110 p~GtGKThLa~al~~~a~-~~G~~v 133 (259)
T PRK09183 110 PSGVGKTHLAIALGYEAV-RAGIKV 133 (259)
T ss_pred CCCCCHHHHHHHHHHHHH-HcCCeE
Confidence 779999999999987765 346554
No 252
>PRK12377 putative replication protein; Provisional
Probab=36.85 E-value=31 Score=32.91 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=19.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|.|.|||+++.++++.|.. -|+.+
T Consensus 109 ~~GtGKThLa~AIa~~l~~-~g~~v 132 (248)
T PRK12377 109 KPGTGKNHLAAAIGNRLLA-KGRSV 132 (248)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCCe
Confidence 5699999999999999964 35553
No 253
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=36.22 E-value=27 Score=31.90 Aligned_cols=21 Identities=48% Similarity=0.512 Sum_probs=17.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHK 27 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk 27 (353)
|-|.||||+++-++-+++ .|.
T Consensus 9 ~~G~GKS~lal~la~~va--~G~ 29 (239)
T cd01125 9 PGGTGKSSLLLVLALAMA--LGK 29 (239)
T ss_pred CCCCCHHHHHHHHHHHHh--cCc
Confidence 789999999999988774 455
No 254
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=36.21 E-value=40 Score=28.63 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=20.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce-eeEeeC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT-FACVRQ 35 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~-~~~lRq 35 (353)
|.|.||||++.-++.... +-|+++ ++.+-+
T Consensus 7 ~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~e~ 37 (187)
T cd01124 7 GPGTGKTTFALQFLYAGL-ARGEPGLYVTLEE 37 (187)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCcEEEEECCC
Confidence 679999999988766654 346665 444433
No 255
>PRK13949 shikimate kinase; Provisional
Probab=35.78 E-value=20 Score=31.62 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.=|++.|+
T Consensus 9 ~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 9 YMGAGKTTLGKALARELG 26 (169)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 679999999998888774
No 256
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=35.68 E-value=20 Score=32.78 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=14.3
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
+-|+||||++.-|.+.+
T Consensus 7 ~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 7 VTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 56999999998887765
No 257
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.68 E-value=33 Score=35.72 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=18.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|-|.|||||...|+..+.. .|+++
T Consensus 214 ptGvGKTTt~akLA~~l~~-~g~~V 237 (407)
T PRK12726 214 QTGVGKTTTLVKLGWQLLK-QNRTV 237 (407)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCeE
Confidence 4599999999999987743 46554
No 258
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=35.50 E-value=20 Score=38.70 Aligned_cols=18 Identities=50% Similarity=0.660 Sum_probs=16.3
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-|++.|+
T Consensus 9 ~~GsGKST~ak~la~~l~ 26 (712)
T PRK09518 9 PAGVGKSSVSRALAQYLG 26 (712)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999999998874
No 259
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=34.78 E-value=35 Score=30.33 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=19.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|.|.||||++.-++..+.. .|.+++
T Consensus 27 ~~GsGKT~l~~~~a~~~~~-~g~~v~ 51 (218)
T cd01394 27 PPGTGKTNIAIQLAVETAG-QGKKVA 51 (218)
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCeEE
Confidence 6799999999999887753 466653
No 260
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=34.71 E-value=21 Score=38.23 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=16.3
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|+||||++..|++.|+
T Consensus 450 ~~~~gks~~~~~l~~~~~ 467 (661)
T PRK11860 450 PTASGKGTVAARVAEALG 467 (661)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 799999999999998875
No 261
>PRK14527 adenylate kinase; Provisional
Probab=34.67 E-value=22 Score=31.21 Aligned_cols=18 Identities=50% Similarity=0.650 Sum_probs=15.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||.+.-|++-++
T Consensus 14 ~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 14 PPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999998887764
No 262
>PLN03025 replication factor C subunit; Provisional
Probab=34.67 E-value=25 Score=33.75 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=16.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++..++..+.
T Consensus 42 p~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 42 PPGTGKTTSILALAHELL 59 (319)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 789999999999999873
No 263
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=34.54 E-value=21 Score=32.29 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||+..-+.+.+.
T Consensus 51 ~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 689999999998877664
No 264
>PRK14532 adenylate kinase; Provisional
Probab=34.25 E-value=21 Score=30.94 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||.+-=|++.++
T Consensus 8 ~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 8 PPAAGKGTQAKRLVEERG 25 (188)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 679999999887776553
No 265
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=34.03 E-value=23 Score=29.54 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=37.0
Q ss_pred hhhcCCCceecCcceecHHHHHhhhhcCCCcC-CCCCCCHHHHhhhhcCCCCC
Q psy7967 194 GLKFGVPVVVKGKREFSIIQRRRLLRLDINRT-DPNTLTPEEITKFVRLNINP 245 (353)
Q Consensus 194 ~~~~gvP~vv~g~R~fs~~~~rrl~klgInk~-~p~~lt~e~i~~~n~L~IDp 245 (353)
.++.|+.+|++ +.|..+-.|.+.++|+--. -|+.=..+.+.++.++.|||
T Consensus 38 l~~~Gi~aVia--~sfa~If~rN~~n~Gll~l~~~~~~~~~~i~~gd~l~id~ 88 (88)
T cd00404 38 LRLLGGRAVIA--KSFARIFFRNLVDQGLLPLEFADPEDYLKLHTGDELDIYP 88 (88)
T ss_pred HHHhCCCEEEE--eCHHHHHHhhHHhcCCceEEecCcchhhhcCCCCEEEeCC
Confidence 34678999998 8999999999999998543 12222335677888888876
No 266
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=33.97 E-value=37 Score=32.88 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=22.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
+-|+||||+..-|...|.+ .| + ++.|---
T Consensus 9 ~~gSGKTTLi~~Li~~L~~-~G-~-V~~IKhd 37 (274)
T PRK14493 9 YKATGKTTLVERLVDRLSG-RG-R-VGTVKHM 37 (274)
T ss_pred CCCCCHHHHHHHHHHHHHh-CC-C-EEEEEEc
Confidence 3599999999999999974 58 4 5556553
No 267
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=33.93 E-value=22 Score=31.30 Aligned_cols=18 Identities=56% Similarity=0.722 Sum_probs=14.6
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|++.|+
T Consensus 12 ~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 12 PMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCCcCHHHHHHHHHHHcC
Confidence 679999999888777653
No 268
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=33.75 E-value=35 Score=37.36 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=21.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
++|.||||+...+.+++.. .|++++.|
T Consensus 376 ~aGTGKTtll~~i~~~~~~-~g~~V~~~ 402 (744)
T TIGR02768 376 RAGTGKSTMLKAAREAWEA-AGYRVIGA 402 (744)
T ss_pred cCCCCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 6899999999999999864 57766544
No 269
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=33.67 E-value=28 Score=29.87 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=17.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~ 28 (353)
+-|.||||.+.-|++.+. ..|.+
T Consensus 7 ~~GsGKSTla~~L~~~l~-~~g~~ 29 (149)
T cd02027 7 LSGSGKSTIARALEEKLF-QRGRP 29 (149)
T ss_pred CCCCCHHHHHHHHHHHHH-HcCCC
Confidence 469999999999999885 23444
No 270
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.60 E-value=34 Score=33.62 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=29.9
Q ss_pred CCCceecCcceecHHHHHhhhhcCCCcCCCCCC
Q psy7967 198 GVPVVVKGKREFSIIQRRRLLRLDINRTDPNTL 230 (353)
Q Consensus 198 gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~l 230 (353)
++|.|..|.--.+..|+++.-++||+|.+-++-
T Consensus 202 ~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~ 234 (284)
T PRK12737 202 SIPLVLHGASGVPDEDVKKAISLGICKVNVATE 234 (284)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcH
Confidence 699999999999999999999999999885553
No 271
>KOG3022|consensus
Probab=33.58 E-value=38 Score=34.10 Aligned_cols=42 Identities=38% Similarity=0.399 Sum_probs=33.2
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceee---EeeCCCCCCcccccCch
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFA---CVRQPSQGPTFGIKGSH 48 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~---~lRqPS~GP~FGiKGGa 48 (353)
=|.||||+|+=|+-+|.+ .|+++-+ -|=-||+==-||.+|=.
T Consensus 57 GGVGKSTvt~nla~~La~-~g~~vglLD~Dl~GPSiP~m~g~e~~~ 101 (300)
T KOG3022|consen 57 GGVGKSTVTVNLALALAS-EGKKVGLLDADLCGPSIPRMMGLEGEV 101 (300)
T ss_pred CCCchhHHHHHHHHHHhc-CCCcEEEEeecccCCCchhhcCCCCce
Confidence 388999999999999974 6777642 35678887788888874
No 272
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=33.38 E-value=31 Score=28.92 Aligned_cols=31 Identities=39% Similarity=0.540 Sum_probs=23.3
Q ss_pred HHHHhhhhcCCCceecCcceecHHHHHhhhhc
Q psy7967 189 KHVSNGLKFGVPVVVKGKREFSIIQRRRLLRL 220 (353)
Q Consensus 189 ~hi~n~~~~gvP~vv~g~R~fs~~~~rrl~kl 220 (353)
.|++-+.++++|+|+ |+=-|++.|+++|+++
T Consensus 82 ~~~~~~~~~g~~~Vi-GTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 82 DNLEYALKHGVPLVI-GTTGFSDEQIDELEEL 112 (124)
T ss_dssp HHHHHHHHHT-EEEE-E-SSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEE-ECCCCCHHHHHHHHHH
Confidence 466777788999755 8888999999998884
No 273
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=33.33 E-value=36 Score=34.26 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=19.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
+-|.||||...-|.+.|....|.++
T Consensus 7 l~GaGKST~~~~l~~~l~~~~g~~v 31 (340)
T TIGR03575 7 LPAAGKSTLARSLSATLRRERGWAV 31 (340)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCeE
Confidence 4699999999999999974345543
No 274
>PRK13764 ATPase; Provisional
Probab=33.11 E-value=41 Score=36.51 Aligned_cols=19 Identities=42% Similarity=0.422 Sum_probs=17.0
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|+||||+...|++.+..
T Consensus 265 ~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 265 APGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 6799999999999999874
No 275
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=33.07 E-value=43 Score=33.42 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=22.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|-|+||||+.-.|.+.+........++++-+|.
T Consensus 152 ~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~ 184 (323)
T PRK13833 152 GTGSGKTTLANAVIAEIVASAPEDRLVILEDTA 184 (323)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCceEEEecCCc
Confidence 569999999999988874222334566766554
No 276
>PRK02496 adk adenylate kinase; Provisional
Probab=33.06 E-value=26 Score=30.40 Aligned_cols=18 Identities=44% Similarity=0.658 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|++.++
T Consensus 9 ~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 9 PPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999988887764
No 277
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=32.79 E-value=23 Score=32.98 Aligned_cols=17 Identities=35% Similarity=0.235 Sum_probs=14.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||.+.-|++.+
T Consensus 10 ~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 10 VPGSGKSTWAREFAAKN 26 (300)
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 67999999998887765
No 278
>PRK06921 hypothetical protein; Provisional
Probab=32.77 E-value=34 Score=32.61 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=18.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~ 28 (353)
|.|.|||+++..++..+..+.|+.
T Consensus 125 ~~G~GKThLa~aia~~l~~~~g~~ 148 (266)
T PRK06921 125 QPGSGKTHLLTAAANELMRKKGVP 148 (266)
T ss_pred CCCCcHHHHHHHHHHHHhhhcCce
Confidence 679999999999999886432444
No 279
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=32.42 E-value=25 Score=32.96 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-|++.++
T Consensus 29 ~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 29 PAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999988887653
No 280
>PRK10536 hypothetical protein; Provisional
Probab=32.23 E-value=43 Score=32.92 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=21.1
Q ss_pred CCCCCcchhHHHHHH-HHHhhcCCceeeEeeCCCC
Q psy7967 5 PLGEGKSTTTIGLAQ-ALAAHKHKNTFACVRQPSQ 38 (353)
Q Consensus 5 P~GEGKsTttiGL~q-al~~~lgk~~~~~lRqPS~ 38 (353)
|+|.|||++++.++. ++-.. ..+.+...| |.+
T Consensus 82 ~aGTGKT~La~a~a~~~l~~~-~~~kIiI~R-P~v 114 (262)
T PRK10536 82 EAGCGKTWISAAKAAEALIHK-DVDRIIVTR-PVL 114 (262)
T ss_pred CCCCCHHHHHHHHHHHHHhcC-CeeEEEEeC-CCC
Confidence 799999999999888 44221 234444444 554
No 281
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.13 E-value=39 Score=34.53 Aligned_cols=18 Identities=44% Similarity=0.569 Sum_probs=15.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.|||||+.-|+..+.
T Consensus 182 ptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 182 PTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 449999999999997775
No 282
>PRK04040 adenylate kinase; Provisional
Probab=32.07 E-value=29 Score=31.27 Aligned_cols=18 Identities=28% Similarity=0.219 Sum_probs=15.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+-|.||||++.-|.+.|.
T Consensus 10 ~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 10 VPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 569999999999988874
No 283
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=31.91 E-value=44 Score=27.10 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=12.2
Q ss_pred CCCCCCcchhHHHHHHHH
Q psy7967 4 TPLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal 21 (353)
-|.|.|||++.....-..
T Consensus 31 ~~~GsGKT~~~~~~~~~~ 48 (201)
T smart00487 31 APTGSGKTLAALLPALEA 48 (201)
T ss_pred CCCCCchhHHHHHHHHHH
Confidence 377999999655554433
No 284
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=31.89 E-value=25 Score=39.60 Aligned_cols=18 Identities=44% Similarity=0.554 Sum_probs=16.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|+||||++--|++.|+
T Consensus 42 ~~gsGKst~~~~la~~l~ 59 (863)
T PRK12269 42 PAGSGKSSVCRLLASRLG 59 (863)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 889999999999999886
No 285
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=31.83 E-value=27 Score=31.74 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.3
Q ss_pred CCCCcchhHHHHHHHHH
Q psy7967 6 LGEGKSTTTIGLAQALA 22 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~ 22 (353)
-|+||||.+--|++-|.
T Consensus 8 ~GsGKSTl~~~L~~~l~ 24 (219)
T cd02030 8 IASGKGKLAKELAEKLG 24 (219)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 59999999988887764
No 286
>PRK14530 adenylate kinase; Provisional
Probab=31.63 E-value=27 Score=31.36 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=14.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||.+.=|++.++
T Consensus 11 ~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 11 APGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999888877663
No 287
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=31.55 E-value=24 Score=37.41 Aligned_cols=17 Identities=53% Similarity=0.733 Sum_probs=14.6
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|.|+||||++.-|++-|
T Consensus 292 ~sgsGKst~a~~la~~l 308 (512)
T PRK13477 292 PAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 78999999998777766
No 288
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=31.46 E-value=31 Score=36.02 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=21.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
|-|+|||||.-.+.+.+.. -+ ..++++=.|
T Consensus 250 ptGSGKTTtL~a~L~~l~~-~~-~~iiTiEDp 279 (486)
T TIGR02533 250 PTGSGKTTTLYAALSRLNT-PE-RNILTVEDP 279 (486)
T ss_pred CCCCCHHHHHHHHHhccCC-CC-CcEEEEcCC
Confidence 6799999999888777753 23 346666555
No 289
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=31.18 E-value=21 Score=37.11 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=15.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.|||.+++|++|.|+
T Consensus 58 ppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 58 PPGTGKTALAMAIAKELG 75 (398)
T ss_dssp -TTSSHHHHHHHHHHHCT
T ss_pred CCCCCchHHHHHHHHHhC
Confidence 779999999999999875
No 290
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=30.90 E-value=46 Score=29.57 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=24.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
+.|.||||+.--|.+.|.. .|.+ ++.++.-.-+
T Consensus 9 ~~gsGKTTli~~L~~~l~~-~g~~-V~~iK~~~~~ 41 (159)
T cd03116 9 YSGSGKTTLLEKLIPALSA-RGLR-VAVIKHDHHD 41 (159)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCc-EEEEEecCCc
Confidence 4599999999999999974 4766 4666654433
No 291
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=30.86 E-value=26 Score=28.91 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=19.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV 33 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l 33 (353)
|-|.|||-+.+.+..-+.. +.+...
T Consensus 33 ~tGsGKT~~~~~~~~~l~~----~~l~~~ 57 (184)
T PF04851_consen 33 PTGSGKTIIALALILELAR----KVLIVA 57 (184)
T ss_dssp STTSSHHHHHHHHHHHHHC----EEEEEE
T ss_pred CCCCCcChhhhhhhhcccc----ceeEec
Confidence 6799999999988877753 555544
No 292
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=30.76 E-value=38 Score=32.03 Aligned_cols=39 Identities=31% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccc
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGI 44 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGi 44 (353)
-|.|.||||+.--|-+.. .+....-.+=|+|=-|=+=|+
T Consensus 11 gPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~ 49 (191)
T COG0194 11 GPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGV 49 (191)
T ss_pred CCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCc
Confidence 389999999999998887 466777788899998887665
No 293
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=30.58 E-value=25 Score=33.00 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=16.7
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
||=|| |.||||++-=|. . +|.+.+
T Consensus 5 ITGTP-GvGKTT~~~~L~-~----lg~~~i 28 (180)
T COG1936 5 ITGTP-GVGKTTVCKLLR-E----LGYKVI 28 (180)
T ss_pred EeCCC-CCchHHHHHHHH-H----hCCcee
Confidence 45676 999999987665 3 455554
No 294
>PRK06761 hypothetical protein; Provisional
Probab=30.52 E-value=41 Score=32.99 Aligned_cols=32 Identities=25% Similarity=0.082 Sum_probs=23.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQ 38 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~ 38 (353)
|-|.||||++.-|.+-|.. .|.++. +.++|..
T Consensus 11 ~~GsGKTTla~~L~~~L~~-~g~~v~-~~~~~~~ 42 (282)
T PRK06761 11 LPGFGKSTTAKMLNDILSQ-NGIEVE-LYLEGNL 42 (282)
T ss_pred CCCCCHHHHHHHHHHhcCc-CceEEE-EEecCCC
Confidence 5799999999999999863 455543 3555554
No 295
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=30.43 E-value=38 Score=28.36 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=16.5
Q ss_pred CCCCCcchhHHHHHHHHHhh
Q psy7967 5 PLGEGKSTTTIGLAQALAAH 24 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~ 24 (353)
|.|.||||+..-+.+.+..+
T Consensus 32 ~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 32 ESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 67999999999888888754
No 296
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=30.42 E-value=46 Score=29.30 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=17.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|.|.||||.+.-++-.... .|.++
T Consensus 20 ~~GsGKT~l~~~~~~~~~~-~g~~v 43 (209)
T TIGR02237 20 PPGSGKTNICMILAVNAAR-QGKKV 43 (209)
T ss_pred CCCCCHHHHHHHHHHHHHh-CCCeE
Confidence 6799999999887766543 34433
No 297
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=30.18 E-value=50 Score=32.11 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=21.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
|-|+||||+.-.|.+.+...-....++++=+|
T Consensus 140 ~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 140 GTGSGKTTLANALLAEIAKNDPTDRVVIIEDT 171 (299)
T ss_pred CCCCCHHHHHHHHHHHhhccCCCceEEEECCc
Confidence 56999999999988877431112346666554
No 298
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=30.03 E-value=46 Score=35.09 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=19.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|-|.|||||..=|+-.|.. .|+++.
T Consensus 249 ptGvGKTTTiaKLA~~L~~-~GkkVg 273 (436)
T PRK11889 249 PTGVGKTTTLAKMAWQFHG-KKKTVG 273 (436)
T ss_pred CCCCcHHHHHHHHHHHHHH-cCCcEE
Confidence 5799999999999988853 466554
No 299
>PRK08181 transposase; Validated
Probab=29.96 E-value=43 Score=32.34 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=19.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|-|.|||..+.++++.+.. -|+++
T Consensus 114 p~GtGKTHLa~Aia~~a~~-~g~~v 137 (269)
T PRK08181 114 PPGGGKSHLAAAIGLALIE-NGWRV 137 (269)
T ss_pred cCCCcHHHHHHHHHHHHHH-cCCce
Confidence 7899999999999998864 46554
No 300
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=29.95 E-value=43 Score=30.72 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=18.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|.|.||||++.-++..+....|.++
T Consensus 38 ~~G~GKT~l~~~~~~~~~~~~g~~v 62 (271)
T cd01122 38 GTGVGKTTFLREYALDLITQHGVRV 62 (271)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCceE
Confidence 6799999999988777644335554
No 301
>PRK07429 phosphoribulokinase; Provisional
Probab=29.94 E-value=28 Score=34.51 Aligned_cols=18 Identities=44% Similarity=0.481 Sum_probs=15.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|+||||++-.|.+.|+
T Consensus 16 ~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 16 DSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CCCCCHHHHHHHHHhHhc
Confidence 579999999988887775
No 302
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=29.89 E-value=35 Score=30.06 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=15.6
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++..+++.+.
T Consensus 46 ~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 46 ESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 679999999999887764
No 303
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=29.86 E-value=48 Score=32.54 Aligned_cols=18 Identities=39% Similarity=0.353 Sum_probs=14.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|..-|.
T Consensus 70 ~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 70 SVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 579999999977665553
No 304
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=29.74 E-value=30 Score=32.32 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-+++.++
T Consensus 38 p~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999988877664
No 305
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.70 E-value=74 Score=28.00 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=26.9
Q ss_pred CCCceecCcceecHHH----HHhhhhcCCCc-CCCCCCCHHHH
Q psy7967 198 GVPVVVKGKREFSIIQ----RRRLLRLDINR-TDPNTLTPEEI 235 (353)
Q Consensus 198 gvP~vv~g~R~fs~~~----~rrl~klgInk-~~p~~lt~e~i 235 (353)
.+|+++-|.-..++.- .++|+++|+.. |.|.+ +.+++
T Consensus 81 ~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt-~~~~i 122 (128)
T cd02072 81 DILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT-PPEEA 122 (128)
T ss_pred CCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC-CHHHH
Confidence 5898888887665443 37799999975 77766 55555
No 306
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=29.69 E-value=33 Score=32.32 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=16.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|.|+||||++.=|+. |+|.+.+
T Consensus 8 ~pGsG~TTva~~lAe----~~gl~~v 29 (179)
T COG1102 8 LPGSGKTTVARELAE----HLGLKLV 29 (179)
T ss_pred CCCCChhHHHHHHHH----HhCCcee
Confidence 789999999877665 5565544
No 307
>PF12846 AAA_10: AAA-like domain
Probab=29.50 E-value=49 Score=29.64 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=18.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
+-|.||||+..-|.+.+-+ .|...+
T Consensus 9 ~tGsGKT~~~~~l~~~~~~-~g~~~~ 33 (304)
T PF12846_consen 9 KTGSGKTTLLKNLLEQLIR-RGPRVV 33 (304)
T ss_pred CCCCcHHHHHHHHHHHHHH-cCCCEE
Confidence 4699999999999887754 464443
No 308
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=29.44 E-value=32 Score=33.04 Aligned_cols=18 Identities=33% Similarity=0.270 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|.+.|.
T Consensus 7 ~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 7 DSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CCCCCHHHHHHHHHHhhC
Confidence 679999999988887764
No 309
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=29.37 E-value=36 Score=29.58 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.6
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+.|+||||++-.|.+.|.
T Consensus 26 ~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 26 LSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 469999999999988875
No 310
>PRK08116 hypothetical protein; Validated
Probab=29.21 E-value=48 Score=31.62 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~ 28 (353)
|.|.|||.++..+++.|..+ |+.
T Consensus 122 ~~GtGKThLa~aia~~l~~~-~~~ 144 (268)
T PRK08116 122 SVGTGKTYLAACIANELIEK-GVP 144 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCe
Confidence 57999999999999999654 544
No 311
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=29.16 E-value=41 Score=30.15 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.|||+.+..++..+.
T Consensus 50 ~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 50 EAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 679999999999988764
No 312
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=29.10 E-value=29 Score=36.68 Aligned_cols=18 Identities=50% Similarity=0.600 Sum_probs=14.6
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.|||||..=|++-|+
T Consensus 53 P~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 53 PSGCGKTTTVKVLAKELG 70 (519)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 899999998877766654
No 313
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.10 E-value=51 Score=35.72 Aligned_cols=30 Identities=43% Similarity=0.522 Sum_probs=20.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
|-|.|||||+.-|+..+....+.+.+..+.
T Consensus 358 PtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 358 PTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 459999999999998775432223344443
No 314
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=29.04 E-value=43 Score=26.66 Aligned_cols=19 Identities=47% Similarity=0.609 Sum_probs=15.8
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|.|.||||+..=+.+.+..
T Consensus 12 ~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 12 PPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -TTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhHH
Confidence 6799999999999888754
No 315
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=28.87 E-value=53 Score=31.83 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=48.4
Q ss_pred HHHHHhh-ccCCCeEEeecccccccccccccccccccCCCCCCeEE---EEeehH-HHHhcCCCCCCCCCCCCCCCCcc-
Q psy7967 101 DLIALKL-VGAEGYVVTEAGFGSDIGMEKFFNIKCRTSGKIPDAVV---LVTTVR-ALKMHGGGPSVVSGQPLKPEYTE- 174 (353)
Q Consensus 101 d~~al~l-~g~~~~vvTeAGfg~dlg~EkF~nik~r~~g~~p~a~v---lvAtir-alk~hgg~~~~~~~~~~~~e~~~- 174 (353)
+.+.-|+ +|. ||+||-.-|-.+. .++|.+ +||..|+..-.+. -+.+.+ ++++. -++|-.+|+++.+
T Consensus 152 ~~L~~Ki~aGA-~f~iTQ~~Fd~~~-~~~f~~-~~~~~gi~~PIi~GI~pi~s~~~~~~~~-----~~~Gi~vP~~l~~~ 223 (281)
T TIGR00677 152 KYLKEKVDAGA-DFIITQLFYDVDN-FLKFVN-DCRAIGIDCPIVPGIMPINNYASFLRRA-----KWSKTKIPQEIMSR 223 (281)
T ss_pred HHHHHHHHcCC-CEeeccceecHHH-HHHHHH-HHHHcCCCCCEEeeccccCCHHHHHHHH-----hcCCCCCCHHHHHH
Confidence 4555554 333 6999999988765 577777 6998875433221 223333 23331 2456666665443
Q ss_pred -----cc-HHHHHhhhhhHHHHHHhhhhcCCC
Q psy7967 175 -----EN-LDLVQKGCVNLEKHVSNGLKFGVP 200 (353)
Q Consensus 175 -----en-~~~l~~g~~nl~~hi~n~~~~gvP 200 (353)
++ .+..+.|..--..+++.++..|+|
T Consensus 224 l~~~~~~~~~~~~~gi~~a~~~~~~l~~~G~~ 255 (281)
T TIGR00677 224 LEPIKDDDEAVRDYGIELIVEMCQKLLASGIK 255 (281)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 12 112233444444455555555555
No 316
>PRK00023 cmk cytidylate kinase; Provisional
Probab=28.77 E-value=32 Score=31.80 Aligned_cols=18 Identities=44% Similarity=0.591 Sum_probs=14.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-|++-|+
T Consensus 12 ~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 12 PAGSGKGTVAKILAKKLG 29 (225)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999877776653
No 317
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=28.54 E-value=41 Score=36.98 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=23.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGG 47 (353)
|-|.||||.+.-|+++|..+ |.+-+|||
T Consensus 111 PpG~GKSsLa~~la~~le~~---------------~~Y~~kg~ 138 (644)
T PRK15455 111 PVGGGKSSLAERLKSLMERV---------------PIYVLKAN 138 (644)
T ss_pred CCCCCchHHHHHHHHHHHhC---------------cceeecCC
Confidence 78999999999999999753 67777885
No 318
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.49 E-value=52 Score=36.80 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=19.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|-|.|||||..=|+--+....|++.+
T Consensus 193 pnGvGKTTTiaKLA~~~~~~~G~kkV 218 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCVAREGADQL 218 (767)
T ss_pred CCCCcHHHHHHHHHhhHHHHcCCCeE
Confidence 77999999999999777433454333
No 319
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=28.46 E-value=26 Score=29.88 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=10.4
Q ss_pred CCCCCcchhHHHH
Q psy7967 5 PLGEGKSTTTIGL 17 (353)
Q Consensus 5 P~GEGKsTttiGL 17 (353)
|-|+||||+..=|
T Consensus 23 pSGsGKSTLl~~l 35 (107)
T cd00820 23 DSGIGKTELALEL 35 (107)
T ss_pred CCCCCHHHHHHHh
Confidence 7899999987654
No 320
>PRK13695 putative NTPase; Provisional
Probab=28.27 E-value=67 Score=27.73 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=18.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
+-|.||||+..=+.+.+.. .|.+.
T Consensus 8 ~~G~GKTTll~~i~~~l~~-~G~~~ 31 (174)
T PRK13695 8 PPGVGKTTLVLKIAELLKE-EGYKV 31 (174)
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCeE
Confidence 5699999999988887753 46554
No 321
>PF12086 DUF3563: Protein of unknown function (DUF3563); InterPro: IPR021946 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 50 amino acids in length. This protein has conserved AYL and DLE sequence motifs.
Probab=28.02 E-value=48 Score=26.23 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=24.1
Q ss_pred ccchhhhhHHHHHHhcCCHHHHHHHhcCe
Q psy7967 268 FDISVASEVMAALALSKNLEDLYNRLSRM 296 (353)
Q Consensus 268 FdITvASEIMAILcLA~dl~DLk~RLgrI 296 (353)
|+-+..++=+|-|+=|+|+.||.+|+-.+
T Consensus 15 ~~~~~~~r~eaYLA~s~D~~DLErRmr~l 43 (59)
T PF12086_consen 15 FERSERERREAYLAQSTDIYDLERRMREL 43 (59)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55566677799999999999999998754
No 322
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=27.90 E-value=30 Score=26.75 Aligned_cols=14 Identities=29% Similarity=0.230 Sum_probs=10.9
Q ss_pred CCCCCcchhHHHHH
Q psy7967 5 PLGEGKSTTTIGLA 18 (353)
Q Consensus 5 P~GEGKsTttiGL~ 18 (353)
|.|.||||+.--|.
T Consensus 4 ~~gsGKstl~~~l~ 17 (163)
T cd00880 4 RTNAGKSSLLNALL 17 (163)
T ss_pred CCCCCHHHHHHHHh
Confidence 67999999966554
No 323
>PRK08939 primosomal protein DnaI; Reviewed
Probab=27.73 E-value=57 Score=31.94 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|.|.|||.++.+|+..|. ..|+++
T Consensus 164 ~~G~GKThLa~Aia~~l~-~~g~~v 187 (306)
T PRK08939 164 DFGVGKSYLLAAIANELA-KKGVSS 187 (306)
T ss_pred CCCCCHHHHHHHHHHHHH-HcCCCE
Confidence 689999999999999996 356654
No 324
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=27.68 E-value=51 Score=31.38 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=21.6
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeC
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQ 35 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRq 35 (353)
.|.||||++..|.+.|.+ .|.+ ++.+..
T Consensus 10 ~gsGKTtl~~~l~~~L~~-~G~~-V~viK~ 37 (229)
T PRK14494 10 KDSGKTTLIEKILKNLKE-RGYR-VATAKH 37 (229)
T ss_pred CCChHHHHHHHHHHHHHh-CCCe-EEEEEe
Confidence 599999999999999964 4655 455553
No 325
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=27.29 E-value=30 Score=34.12 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=16.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||+++-|++.++
T Consensus 12 ptgsGKt~la~~la~~~~ 29 (307)
T PRK00091 12 PTASGKTALAIELAKRLN 29 (307)
T ss_pred CCCcCHHHHHHHHHHhCC
Confidence 789999999999988774
No 326
>PLN02840 tRNA dimethylallyltransferase
Probab=27.20 E-value=28 Score=36.21 Aligned_cols=18 Identities=44% Similarity=0.685 Sum_probs=16.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-|++.++
T Consensus 29 ptgsGKTtla~~La~~~~ 46 (421)
T PLN02840 29 PTGAGKSRLALELAKRLN 46 (421)
T ss_pred CCCCCHHHHHHHHHHHCC
Confidence 789999999999998875
No 327
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=27.18 E-value=37 Score=30.20 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=13.4
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||+.--|+.-+
T Consensus 11 ~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 11 VSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 67999999887776654
No 328
>CHL00181 cbbX CbbX; Provisional
Probab=26.98 E-value=40 Score=32.56 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=16.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++..+++.+.
T Consensus 67 ~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 67 SPGTGKTTVALKMADILY 84 (287)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 779999999999999885
No 329
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=26.92 E-value=56 Score=32.35 Aligned_cols=39 Identities=31% Similarity=0.387 Sum_probs=23.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH 48 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa 48 (353)
|-|.||||+.--|...|.+ .|+++-+--=.||- =.-||+
T Consensus 37 ~PGaGKSTli~~l~~~~~~-~g~~VaVlAVDPSS----p~tGGA 75 (266)
T PF03308_consen 37 PPGAGKSTLIDALIRELRE-RGKRVAVLAVDPSS----PFTGGA 75 (266)
T ss_dssp -TTSSHHHHHHHHHHHHHH-TT--EEEEEE-GGG----GCC---
T ss_pred CCCCcHHHHHHHHHHHHhh-cCCceEEEEECCCC----CCCCCc
Confidence 5699999999999999975 57776444445552 244554
No 330
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=26.57 E-value=81 Score=31.27 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
+.|+||||..-.|...|..+ -.++.+++-.-+
T Consensus 13 ~~gsGKTTl~~~l~~~l~~~---~~V~~ik~~~~~ 44 (369)
T PRK14490 13 YSGSGKTTLITALVRRLSER---FSVGYYKHGCHR 44 (369)
T ss_pred CCCCCHHHHHHHHHHHHhhC---ceEEEEEeCCCC
Confidence 46999999999999999643 567778774444
No 331
>KOG3354|consensus
Probab=26.51 E-value=39 Score=31.96 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=14.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+.|.||||+.--|+..|+
T Consensus 20 vsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 20 VSGSGKSTIGKALSEELG 37 (191)
T ss_pred cCCCChhhHHHHHHHHhC
Confidence 489999999877777764
No 332
>PRK12338 hypothetical protein; Provisional
Probab=26.46 E-value=32 Score=34.48 Aligned_cols=18 Identities=44% Similarity=0.486 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+.|.||||++-.|++.|+
T Consensus 12 ~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 12 ASGIGKSTIASELARTLN 29 (319)
T ss_pred CCCCCHHHHHHHHHHHCC
Confidence 579999999988887764
No 333
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=26.34 E-value=45 Score=28.65 Aligned_cols=18 Identities=56% Similarity=0.778 Sum_probs=15.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|+-++.
T Consensus 40 ~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 40 PPGSGKTTLALQLAAALA 57 (193)
T ss_dssp CSTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 679999999999988774
No 334
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=26.33 E-value=34 Score=30.16 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=13.8
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||+..-|.+.+
T Consensus 33 ~tGSGKTTll~aL~~~i 49 (186)
T cd01130 33 GTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 67999999987777655
No 335
>PLN02200 adenylate kinase family protein
Probab=26.24 E-value=38 Score=31.69 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||.+.-|++.++
T Consensus 51 ~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 51 GPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 569999999999988764
No 336
>PF09156 Anthrax-tox_M: Anthrax toxin lethal factor, middle domain; InterPro: IPR015239 Anthrax toxin is a plasmid-encoded toxin complex produced by the Gram-positive, spore-forming bacteria, Bacillus anthracis. The toxin consists of three non-toxic proteins: the protective antigen (PA), the lethal factor (LF) and the edema factor (EF) []. These component proteins self-assemble at the surface of host cell receptors, yielding a series of toxic complexes that can produce shock-like symptoms and death. Anthrax toxin is one of a large group of Bacillus and Clostridium exotoxins referred to as binary toxins, forming independent enzymatic (A moiety) and binding (B moiety) components. The LF and EF proteins are the enzymes (A moiety) that act on cytosolic substrates, while PA is a multi-functional protein (B moiety) that binds to cell surface receptors, mediates the assembly and internalisation of the complexes, and delivers them to the host cell endosome []. Once PA is attached to the host receptor [], it must then be cleaved by a host cell surface (furin family) protease before it is able to bind EF and LF. The cleavage of the N terminus of PA enables the C-terminal fragment to self-associate into a ring-shaped heptameric complex (prepore) that can bind LF or EF competitively. The PA-LF/EF complex is then internalised by endocytosis, and delivered to the endosome, where PA forms a pore in the endosomal membrane in order to translocate LF and EF to the cytosol. LF is a Zn-dependent metalloprotease that cleaves and inactivates mitogen-activated protein (MAP) kinases, kills macrophages, and causes death of the host by inhibiting cell proliferation [, ]. EF is a calcium-and calmodulin-dependent adenylyl cyclase that can cause edema (fluid-filled swelling) when associated with PA. EF is not toxic by itself, and is required for the survival of germinated Bacillus spores within macrophages at the early stages of infection. EF dramatically elevates the level of host intracellular cAMP, a ubiquitous messenger that integrates many processes of the cell; increases in cAMP can interfere with host intracellular signalling []. This entry represents the central domain found in the lethal factor protein of anthrax toxin.; PDB: 1PWV_B 1PWW_A 1PWQ_B 1PWP_B 1J7N_A 1JKY_A 1PWU_A 4DV8_A 1YQY_A 1ZXV_A ....
Probab=26.22 E-value=93 Score=30.05 Aligned_cols=58 Identities=19% Similarity=0.365 Sum_probs=40.7
Q ss_pred CCCccccHHHHHhhhhhHHHHHHhhhhcCCCceecCcceecHHHHHhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCc
Q psy7967 170 PEYTEENLDLVQKGCVNLEKHVSNGLKFGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITKFVRLNINPDT 247 (353)
Q Consensus 170 ~e~~~en~~~l~~g~~nl~~hi~n~~~~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~ 247 (353)
|.+.||..+++++ +-++.+--.|.....-|+||-|+-.| +|+|||-.-.|+..+|..+
T Consensus 46 hslsqeekellkr------------------iqidssdflsteekeflkklqidird--slseeekellnriqvdssn 103 (287)
T PF09156_consen 46 HSLSQEEKELLKR------------------IQIDSSDFLSTEEKEFLKKLQIDIRD--SLSEEEKELLNRIQVDSSN 103 (287)
T ss_dssp CTSTHHHHHHHHH------------------S-CCCSSSS-HHHHHHHHHHHCCHCT--SSSHHHHHHHHCCSTTTTS
T ss_pred hhhhHHHHHHHHH------------------hccCchhhcchhHHHHHHHhccchhh--hhhHHHHHHHHHhhccCCC
Confidence 6778888877753 12444555577888888998887654 8888888888888777543
No 337
>PRK14528 adenylate kinase; Provisional
Probab=26.22 E-value=39 Score=29.99 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=18.1
Q ss_pred cccHHHHHhhhhhHHHHHHhhhh
Q psy7967 174 EENLDLVQKGCVNLEKHVSNGLK 196 (353)
Q Consensus 174 ~en~~~l~~g~~nl~~hi~n~~~ 196 (353)
..|.+.+++.+..+..++..+..
T Consensus 136 dd~~e~i~~Rl~~y~~~~~pv~~ 158 (186)
T PRK14528 136 DDNEATIKNRLDNYNKKTLPLLD 158 (186)
T ss_pred CCCHHHHHHHHHHHHHHhHHHHH
Confidence 34678899999888888887754
No 338
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.21 E-value=58 Score=34.52 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=21.2
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
-|+|||||+-=|+.-|.+ .|+++.+
T Consensus 109 QGsGKTTt~~KLA~~lkk-~~~kvll 133 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKK-KGKKVLL 133 (451)
T ss_pred cCCChHhHHHHHHHHHHH-cCCceEE
Confidence 499999999999999976 6888743
No 339
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=26.15 E-value=68 Score=31.70 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=20.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
|-|.||||+...|.+.+-..-....++++=+|
T Consensus 156 ~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~ 187 (319)
T PRK13894 156 GTGSGKTTLVNAIINEMVIQDPTERVFIIEDT 187 (319)
T ss_pred CCCCCHHHHHHHHHHhhhhcCCCceEEEEcCC
Confidence 56999999999888775321123345555544
No 340
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=25.91 E-value=61 Score=29.02 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=18.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|.|.||||++.-++..... .|.+++
T Consensus 31 ~~GsGKT~l~~~la~~~~~-~~~~v~ 55 (225)
T PRK09361 31 PPGSGKTNICLQLAVEAAK-NGKKVI 55 (225)
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCeEE
Confidence 6799999999999877643 355543
No 341
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=25.79 E-value=68 Score=29.06 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=20.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce-eeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT-FACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~-~~~lRqP 36 (353)
|.|.||||.+.-++..... .|.++ ++.+.++
T Consensus 33 ~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~ 64 (234)
T PRK06067 33 DHGTGKSVLSQQFVYGALK-QGKKVYVITTENT 64 (234)
T ss_pred CCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCC
Confidence 6799999999998654322 35554 5556554
No 342
>PRK00625 shikimate kinase; Provisional
Probab=25.65 E-value=40 Score=30.23 Aligned_cols=18 Identities=28% Similarity=0.205 Sum_probs=14.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+-|.||||++.-|++-|+
T Consensus 8 ~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 8 LPTVGKTSFGKALAKFLS 25 (173)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 359999999988877664
No 343
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=25.59 E-value=60 Score=35.49 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKH 26 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lg 26 (353)
+.|.||||+...+.+++.+ .|
T Consensus 346 gpGTGKTt~l~~i~~~~~~-~~ 366 (720)
T TIGR01448 346 GPGTGKTTITRAIIELAEE-LG 366 (720)
T ss_pred CCCCCHHHHHHHHHHHHHH-cC
Confidence 6899999999999999964 45
No 344
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=25.43 E-value=38 Score=30.32 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=14.1
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||.+.=|++-+
T Consensus 7 ~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 7 PPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 67999999988887755
No 345
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=25.19 E-value=69 Score=31.69 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=26.3
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 2 TPTPLGEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 2 tPTP~GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
|.|==|.|||.+++.|++.|.+ .|++..+--|
T Consensus 35 NitvGGTGKTP~v~~La~~l~~-~G~~~~IlSR 66 (311)
T TIGR00682 35 NLSVGGTGKTPVVVWLAELLKD-RGLRVGVLSR 66 (311)
T ss_pred ccccCCcChHHHHHHHHHHHHH-CCCEEEEECC
Confidence 3456799999999999999975 5888777776
No 346
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=25.06 E-value=37 Score=29.78 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=12.5
Q ss_pred CCCCCcchhHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQA 20 (353)
Q Consensus 5 P~GEGKsTttiGL~qa 20 (353)
|-|.||||+..-|+..
T Consensus 10 ~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 10 PSGSGKDSLLAALRQR 25 (186)
T ss_pred CCCCCHHHHHHHHhcc
Confidence 7899999988766443
No 347
>PLN02165 adenylate isopentenyltransferase
Probab=25.03 E-value=34 Score=34.53 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=16.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||+++-|++.++
T Consensus 51 PTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 51 ATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCcHHHHHHHHHHHcC
Confidence 679999999999998875
No 348
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=24.96 E-value=43 Score=30.30 Aligned_cols=17 Identities=53% Similarity=0.667 Sum_probs=14.3
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||.+-=|++-+
T Consensus 8 ~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 8 PPGAGKSTLAKKLAKKL 24 (178)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999988887775
No 349
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=24.83 E-value=35 Score=30.74 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=12.2
Q ss_pred CCCCCcchhHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQA 20 (353)
Q Consensus 5 P~GEGKsTttiGL~qa 20 (353)
|-|+||||+.-.|.-.
T Consensus 30 ~nGsGKStll~al~~l 45 (197)
T cd03278 30 PNGSGKSNIIDAIRWV 45 (197)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6799999988666433
No 350
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=24.74 E-value=57 Score=28.61 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=12.8
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
+.|.||||++--|.+
T Consensus 7 ~~gsGKst~~~~l~~ 21 (179)
T cd02022 7 GIGSGKSTVAKLLKE 21 (179)
T ss_pred CCCCCHHHHHHHHHH
Confidence 679999999988766
No 351
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=24.71 E-value=48 Score=27.89 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||.+-=|++-++
T Consensus 4 ~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 4 PPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHhcC
Confidence 679999999988888764
No 352
>PRK14531 adenylate kinase; Provisional
Probab=24.63 E-value=44 Score=29.30 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=14.3
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||.+-=|++.++
T Consensus 10 ~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 10 PPGAGKGTQAARLCAAHG 27 (183)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999877766653
No 353
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=24.18 E-value=42 Score=32.29 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++..+++.++
T Consensus 59 ppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 59 PPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCCccHHHHHHHHHHHhC
Confidence 789999999998888775
No 354
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=23.98 E-value=47 Score=30.18 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=15.9
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||+.--|.+.+.
T Consensus 9 ~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 9 PVGSGKTALIEALTRALR 26 (199)
T ss_pred CCCCCHHHHHHHHHHhhC
Confidence 789999999998888775
No 355
>KOG1534|consensus
Probab=23.97 E-value=71 Score=31.66 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=19.0
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
-|+|+||||-.--+.+-.- ..|+..
T Consensus 10 GpAgSGKSTyC~~~~~h~e-~~gRs~ 34 (273)
T KOG1534|consen 10 GPAGSGKSTYCSSMYEHCE-TVGRSV 34 (273)
T ss_pred ccCCCCcchHHHHHHHHHH-hhCcee
Confidence 4999999999988877664 355554
No 356
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=23.87 E-value=52 Score=30.45 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=13.1
Q ss_pred HHHHHhhhhcCCCceec
Q psy7967 188 EKHVSNGLKFGVPVVVK 204 (353)
Q Consensus 188 ~~hi~n~~~~gvP~vv~ 204 (353)
..|++-+...++|+++.
T Consensus 128 ~~~l~~l~~~~ip~ivv 144 (224)
T cd04165 128 KEHLGLALALNIPVFVV 144 (224)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 34667777889999888
No 357
>KOG1145|consensus
Probab=23.82 E-value=3.3e+02 Score=30.41 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=9.8
Q ss_pred HhhhhcCCCceec
Q psy7967 192 SNGLKFGVPVVVK 204 (353)
Q Consensus 192 ~n~~~~gvP~vv~ 204 (353)
.-++.-+||+||+
T Consensus 247 khAk~A~VpiVvA 259 (683)
T KOG1145|consen 247 KHAKSANVPIVVA 259 (683)
T ss_pred HHHHhcCCCEEEE
Confidence 3355568999999
No 358
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.80 E-value=60 Score=33.17 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=19.2
Q ss_pred CCcchhHHHHHHHHHhhcCCceee
Q psy7967 8 EGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 8 EGKsTttiGL~qal~~~lgk~~~~ 31 (353)
-||||||-=|++.|. ..|+++.+
T Consensus 113 nGKTTTt~ll~~iL~-~~g~~~~~ 135 (454)
T PRK01368 113 NGKSTTTALISHILN-SNGLDYPV 135 (454)
T ss_pred CcHHHHHHHHHHHHH-hcCCCeEE
Confidence 499999999999996 57887654
No 359
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=23.77 E-value=44 Score=33.30 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=14.6
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-|++.|+
T Consensus 100 ~sgsGKStlA~~La~~l~ 117 (301)
T PRK04220 100 ASGVGTSTIAFELASRLG 117 (301)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999998888877663
No 360
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=23.50 E-value=88 Score=31.44 Aligned_cols=32 Identities=34% Similarity=0.285 Sum_probs=26.5
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 2 TPTPLGEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 2 tPTP~GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
|.|==|.|||-+++.|++.|.+ .|.+..+--|
T Consensus 63 NitvGGTGKTP~v~~La~~l~~-~G~~~~IlSR 94 (338)
T PRK01906 63 NVTVGGTGKTPTVIALVDALRA-AGFTPGVVSR 94 (338)
T ss_pred CccCCCCChHHHHHHHHHHHHH-cCCceEEEec
Confidence 3466799999999999999975 5888877776
No 361
>COG2403 Predicted GTPase [General function prediction only]
Probab=23.42 E-value=63 Score=34.11 Aligned_cols=34 Identities=32% Similarity=0.387 Sum_probs=27.4
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 2 TPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 2 tPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|-|--|.|||+++--++|-|. ..|.+. +.+|-|-
T Consensus 132 ~atrtg~GKsaVS~~v~r~l~-ergyrv-~vVrhPm 165 (449)
T COG2403 132 TATRTGVGKSAVSRYVARLLR-ERGYRV-CVVRHPM 165 (449)
T ss_pred EEeccccchhHHHHHHHHHHH-HcCCce-EEEecCc
Confidence 457789999999999999997 468884 4577764
No 362
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.37 E-value=49 Score=32.62 Aligned_cols=18 Identities=39% Similarity=0.414 Sum_probs=16.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-+++.|.
T Consensus 46 p~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 46 TRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 789999999999998885
No 363
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=23.34 E-value=65 Score=31.86 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=18.2
Q ss_pred CCcchhHHHHHHHHHhhcCCcee
Q psy7967 8 EGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 8 EGKsTttiGL~qal~~~lgk~~~ 30 (353)
-||||||-=|++.|. ..|++++
T Consensus 111 ~GKTTTt~li~~iL~-~~g~~~~ 132 (433)
T TIGR01087 111 NGKTTTTSLLYHLLK-AAGLKAF 132 (433)
T ss_pred CCHHHHHHHHHHHHH-hcCCCeE
Confidence 499999999999996 4677754
No 364
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=23.24 E-value=99 Score=29.74 Aligned_cols=23 Identities=39% Similarity=0.332 Sum_probs=17.4
Q ss_pred CCCCCcchhHH-HHHHHHHhhcCC
Q psy7967 5 PLGEGKSTTTI-GLAQALAAHKHK 27 (353)
Q Consensus 5 P~GEGKsTtti-GL~qal~~~lgk 27 (353)
+.|+||||+.. .|..++.+.++.
T Consensus 29 vSGsGKStL~~~~l~~~~~~~~~~ 52 (261)
T cd03271 29 VSGSGKSSLINDTLYPALARRLHL 52 (261)
T ss_pred CCCCchHHHHHHHHHHHHHHHhcc
Confidence 57999999986 667787765543
No 365
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=23.23 E-value=64 Score=27.81 Aligned_cols=21 Identities=48% Similarity=0.428 Sum_probs=16.8
Q ss_pred CCcchhHHHHHHHHHhhcCCce
Q psy7967 8 EGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 8 EGKsTttiGL~qal~~~lgk~~ 29 (353)
-|||||+-=|.+.|..+ |+.+
T Consensus 5 ~GKTTTt~ml~~iL~~~-g~~~ 25 (188)
T PF08245_consen 5 NGKTTTTRMLAHILSAA-GKVV 25 (188)
T ss_dssp SSHHHHHHHHHHHHHHT-TEEE
T ss_pred CCHHHHHHHHHHHHHhc-CCcc
Confidence 49999999999999753 5543
No 366
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=23.14 E-value=95 Score=27.78 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=15.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+.|.||||+..=|.+.+.
T Consensus 30 ~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 30 SPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 689999999999988874
No 367
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=23.10 E-value=65 Score=33.02 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=41.7
Q ss_pred CCCccccHHHHHhhhhhHHHHHH---hhhhcCCCceecCcceecHHHHHhhhhcCCCcCC--CCCCCHHHHhhhhcC
Q psy7967 170 PEYTEENLDLVQKGCVNLEKHVS---NGLKFGVPVVVKGKREFSIIQRRRLLRLDINRTD--PNTLTPEEITKFVRL 241 (353)
Q Consensus 170 ~e~~~en~~~l~~g~~nl~~hi~---n~~~~gvP~vv~g~R~fs~~~~rrl~klgInk~~--p~~lt~e~i~~~n~L 241 (353)
.-+..++++ +-+.-+++|.+ +..++.+++ -.|.|+..++.-|++.||||.. ..++.++-+..-++.
T Consensus 99 slL~~~~l~---~ll~~l~~~~~~~~~~~EitiE~---nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~ 169 (416)
T COG0635 99 SLLSPEQLE---RLLKALRELFNDLDPDAEITIEA---NPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRI 169 (416)
T ss_pred ccCCHHHHH---HHHHHHHHhcccCCCCceEEEEe---CCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCC
Confidence 344455544 44555555552 224455553 5788999999999999999854 456666666655553
No 368
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=23.10 E-value=54 Score=33.57 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=27.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGG 47 (353)
|-|.||||++--|+.+|+.. .|+| .||.|-+||+
T Consensus 86 PPGsGKStla~~La~~l~~y--------s~t~-eG~~Y~~~~~ 119 (361)
T smart00763 86 PVGGGKSSLVECLKRGLEEY--------SKTP-EGRRYTFKWN 119 (361)
T ss_pred CCCCCHHHHHHHHHHHHhhh--------cccc-cCceEEEEec
Confidence 77999999999999999753 3443 5899999884
No 369
>PRK00279 adk adenylate kinase; Reviewed
Probab=23.08 E-value=48 Score=29.76 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=14.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++.=|++-++
T Consensus 8 ~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 8 PPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999887777654
No 370
>PRK06835 DNA replication protein DnaC; Validated
Probab=23.06 E-value=67 Score=31.95 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=20.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
|-|.|||+++.++++.+-. .|+. +..+.
T Consensus 191 ~~GtGKThLa~aIa~~l~~-~g~~-V~y~t 218 (329)
T PRK06835 191 NTGTGKTFLSNCIAKELLD-RGKS-VIYRT 218 (329)
T ss_pred CCCCcHHHHHHHHHHHHHH-CCCe-EEEEE
Confidence 6799999999999998864 3543 44443
No 371
>PLN02540 methylenetetrahydrofolate reductase
Probab=22.90 E-value=1.1e+02 Score=33.05 Aligned_cols=140 Identities=19% Similarity=0.269 Sum_probs=78.2
Q ss_pred HHHHHhh-ccCCCeEEeecccccccccccccccccccCCCC-C--CeEEEEeehHHHH-hcCCCCCCCCCCCCCCCCcc-
Q psy7967 101 DLIALKL-VGAEGYVVTEAGFGSDIGMEKFFNIKCRTSGKI-P--DAVVLVTTVRALK-MHGGGPSVVSGQPLKPEYTE- 174 (353)
Q Consensus 101 d~~al~l-~g~~~~vvTeAGfg~dlg~EkF~nik~r~~g~~-p--~a~vlvAtiralk-~hgg~~~~~~~~~~~~e~~~- 174 (353)
+.+--|+ +|. ||+||-.-|-.|. +++|.+ +||..|.. | =.+.-+.+.+.++ |+ + ..|..++.++.+
T Consensus 160 ~~Lk~KvdAGA-dFiITQlfFD~d~-f~~f~~-~~r~~Gi~vPIipGImPI~S~k~l~r~~----~-l~Gi~IP~~i~~r 231 (565)
T PLN02540 160 AYLKEKVDAGA-DLIITQLFYDTDI-FLKFVN-DCRQIGITCPIVPGIMPINNYKGFLRMT----G-FCKTKIPAEITAA 231 (565)
T ss_pred HHHHHHHHcCC-CEEeeccccCHHH-HHHHHH-HHHhcCCCCCEEeeecccCCHHHHHHHH----h-ccCCcCCHHHHHH
Confidence 4444555 333 6999999988876 678877 89998842 2 0111233444333 43 2 456667766544
Q ss_pred -----ccHHH-HHhhhhhHHHHHHhhhhcCCCceecCccee----cHHHHHhhhhcCCCcCCC--CCCCHHHHhhhhcCC
Q psy7967 175 -----ENLDL-VQKGCVNLEKHVSNGLKFGVPVVVKGKREF----SIIQRRRLLRLDINRTDP--NTLTPEEITKFVRLN 242 (353)
Q Consensus 175 -----en~~~-l~~g~~nl~~hi~n~~~~gvP~vv~g~R~f----s~~~~rrl~klgInk~~p--~~lt~e~i~~~n~L~ 242 (353)
.|.++ .+.|+.-...+++.++..||+- ---+ .+.-.+-|++||+-.... ..|.-..--..++..
T Consensus 232 Le~~kddde~v~~~Gieia~e~~~~L~~~Gv~G----iHfYTlN~e~~v~~ILe~lgl~~~~~~~~~~~~~~s~~~~r~~ 307 (565)
T PLN02540 232 LEPIKDNDEAVKAYGIHLGTEMCKKILAHGIKG----LHLYTLNLEKSALAILMNLGLIDESKVSRPLPWRPPTNVFRTK 307 (565)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCE----EEECccCChHHHHHHHHHcCCCCccccccCCCcCCCCCCCccc
Confidence 23333 3457766777777787777763 2222 334455677777742211 122212222346666
Q ss_pred CCCCceeeee
Q psy7967 243 INPDTISWRR 252 (353)
Q Consensus 243 IDp~~I~WkR 252 (353)
.|.+-|-|..
T Consensus 308 ~~~rpi~~~~ 317 (565)
T PLN02540 308 EDVRPIFWAN 317 (565)
T ss_pred ccccceeecc
Confidence 7777788883
No 372
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=22.31 E-value=50 Score=34.93 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=17.1
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++.-++++|+-
T Consensus 51 p~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 51 IRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 7899999999999999863
No 373
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=22.31 E-value=51 Score=33.05 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=20.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
|-|+||||+.-.|.+.+.. . ..++++-+|
T Consensus 170 ~tGSGKTTll~aLl~~i~~--~-~rivtiEd~ 198 (344)
T PRK13851 170 PTGSGKTTMSKTLISAIPP--Q-ERLITIEDT 198 (344)
T ss_pred CCCccHHHHHHHHHcccCC--C-CCEEEECCC
Confidence 6799999999999887753 2 235556554
No 374
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=22.28 E-value=36 Score=30.59 Aligned_cols=13 Identities=38% Similarity=0.210 Sum_probs=10.5
Q ss_pred CCCCCcchhHHHH
Q psy7967 5 PLGEGKSTTTIGL 17 (353)
Q Consensus 5 P~GEGKsTttiGL 17 (353)
|-|+||||+..-+
T Consensus 29 ~nG~GKSTLl~~i 41 (176)
T cd03238 29 VSGSGKSTLVNEG 41 (176)
T ss_pred CCCCCHHHHHHHH
Confidence 7799999987643
No 375
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=22.14 E-value=60 Score=32.39 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=21.0
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeC
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQ 35 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRq 35 (353)
+|.||||+-..|.+-. -|++..+-+-|
T Consensus 10 LGsGKTTlL~~lL~~~---~g~kiAVIVNE 36 (323)
T COG0523 10 LGSGKTTLLNHLLANR---DGKKIAVIVNE 36 (323)
T ss_pred CCCCHHHHHHHHHhcc---CCCcEEEEEec
Confidence 7999999998886654 38887766665
No 376
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=22.14 E-value=90 Score=31.00 Aligned_cols=32 Identities=31% Similarity=0.238 Sum_probs=26.9
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 2 TPTPLGEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 2 tPTP~GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
|.|==|.|||-+++.|++.|.+ .|++..+.-|
T Consensus 42 NltvGGTGKTP~v~~L~~~L~~-~G~~~~IlSR 73 (326)
T PF02606_consen 42 NLTVGGTGKTPLVIWLARLLQA-RGYRPAILSR 73 (326)
T ss_pred ccccCCCCchHHHHHHHHHHHh-cCCceEEEcC
Confidence 3456699999999999999975 5888877777
No 377
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=22.11 E-value=56 Score=29.55 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=42.4
Q ss_pred hhhcCCCceecCcceecHHHHHhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCceeee
Q psy7967 194 GLKFGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWR 251 (353)
Q Consensus 194 ~~~~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~I~Wk 251 (353)
++++|+++|++ +.|+.+-.|-+-+.|| .|-+++++.+.++.++.||.++=+++
T Consensus 70 l~~~Gi~aVIA--~SFa~If~rN~in~Gl---p~i~~~~~~i~~gd~i~vdl~~~~v~ 122 (154)
T TIGR02087 70 LKAAGIAAVIA--ESFARIFYRNAINIGL---PLIEAKTEGIKDGDEVTVDLETGEIR 122 (154)
T ss_pred HHHhCCCEEEe--ehHHHHHHhhhhhcCC---CcEecCHHHCCCCCEEEEECCCCEEE
Confidence 35689999998 8999999999999998 35567778888888888887654443
No 378
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=22.06 E-value=59 Score=29.01 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=15.6
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.|||.++.-|++.|.
T Consensus 11 psGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 11 PSGVGKTELAKALAELLF 28 (171)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 789999998888888874
No 379
>KOG0744|consensus
Probab=22.05 E-value=54 Score=34.20 Aligned_cols=18 Identities=44% Similarity=0.649 Sum_probs=16.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.|||++..+|+|-|.
T Consensus 185 PPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLS 202 (423)
T ss_pred CCCCChhHHHHHHHHhhe
Confidence 889999999999999885
No 380
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=21.95 E-value=36 Score=32.56 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=19.2
Q ss_pred ccchhhhhHHHHHHhcCCHHHHHHHhcCeEEeecCC
Q psy7967 268 FDISVASEVMAALALSKNLEDLYNRLSRMMVAEDKE 303 (353)
Q Consensus 268 FdITvASEIMAILcLA~dl~DLk~RLgrIvVg~t~d 303 (353)
-|.-.+-|||.+|- ++.+..+..+|=-|.|
T Consensus 173 LD~~t~~~V~~ll~------~~~~~~g~tii~VTHd 202 (226)
T COG1136 173 LDSKTAKEVLELLR------ELNKERGKTIIMVTHD 202 (226)
T ss_pred CChHHHHHHHHHHH------HHHHhcCCEEEEEcCC
Confidence 46666778887764 5655556666666655
No 381
>PLN02796 D-glycerate 3-kinase
Probab=21.71 E-value=63 Score=32.88 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|...|.
T Consensus 108 ~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 108 PQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCCCcHHHHHHHHHHHhc
Confidence 579999999988877774
No 382
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.68 E-value=5.1e+02 Score=26.60 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=22.4
Q ss_pred cCCCceec-----CcceecHHHHHhhhhcCCC
Q psy7967 197 FGVPVVVK-----GKREFSIIQRRRLLRLDIN 223 (353)
Q Consensus 197 ~gvP~vv~-----g~R~fs~~~~rrl~klgIn 223 (353)
|++|++++ |.|.+...+-+.-..+|.+
T Consensus 270 ~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAd 301 (352)
T PRK13396 270 THLPIMIDPSHGTGKSEYVPSMAMAAIAAGTD 301 (352)
T ss_pred hCCCEEECCcccCCcHHHHHHHHHHHHhhCCC
Confidence 68998888 8899998777777778877
No 383
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=21.59 E-value=52 Score=34.67 Aligned_cols=18 Identities=39% Similarity=0.802 Sum_probs=16.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.|||-.++|++|-|+
T Consensus 73 ppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 73 PPGTGKTALAMGIARELG 90 (450)
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 789999999999999886
No 384
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=21.49 E-value=75 Score=36.49 Aligned_cols=27 Identities=22% Similarity=0.051 Sum_probs=20.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
++|.||||+...+.+++.+ .|++++.|
T Consensus 370 ~AGTGKTT~l~~~~~~~e~-~G~~V~~~ 396 (988)
T PRK13889 370 YAGTGKSAMLGVAREAWEA-AGYEVRGA 396 (988)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCeEEEe
Confidence 5899999998888888754 57776654
No 385
>PHA02085 hypothetical protein
Probab=21.38 E-value=32 Score=28.90 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=20.1
Q ss_pred eecccchhhhhcchhHHHHHHHHhh
Q psy7967 83 VHAGPFANIAHGCSSVVADLIALKL 107 (353)
Q Consensus 83 iH~gpfANiahg~~s~~ad~~al~l 107 (353)
+|-+-||-| |-||++||+.+++.-
T Consensus 9 e~R~~Fa~~-~~~N~~IAe~mGmdw 32 (87)
T PHA02085 9 EHKAMFARR-HDCNQWIADKMGTDW 32 (87)
T ss_pred hHHHHHHhh-chhhHHHHHHhcCCc
Confidence 577888887 899999999888764
No 386
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=21.18 E-value=45 Score=29.82 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=12.7
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
+.|+||||++--|.+
T Consensus 10 ~~gsGKst~~~~l~~ 24 (194)
T PRK00081 10 GIGSGKSTVANLFAE 24 (194)
T ss_pred CCCCCHHHHHHHHHH
Confidence 689999999887765
No 387
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.05 E-value=48 Score=35.13 Aligned_cols=19 Identities=42% Similarity=0.501 Sum_probs=17.0
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++.-|+++|+-
T Consensus 48 P~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 48 PRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCCCCHHHHHHHHHHhcCc
Confidence 7899999999999999863
No 388
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=21.01 E-value=68 Score=34.23 Aligned_cols=19 Identities=37% Similarity=0.349 Sum_probs=16.8
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
+-|+||||++..|++.|+.
T Consensus 400 l~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 400 LSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCCChHHHHHHHHHHHhhh
Confidence 4699999999999999874
No 389
>KOG1805|consensus
Probab=20.94 E-value=82 Score=36.64 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 7 GEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 7 GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
|.|||||-.-|.+.|- .+||++..+
T Consensus 695 GTGKTTtI~~LIkiL~-~~gkkVLLt 719 (1100)
T KOG1805|consen 695 GTGKTTTISLLIKILV-ALGKKVLLT 719 (1100)
T ss_pred CCCchhhHHHHHHHHH-HcCCeEEEE
Confidence 8999999999999996 589998655
No 390
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.91 E-value=79 Score=31.71 Aligned_cols=22 Identities=23% Similarity=-0.008 Sum_probs=18.2
Q ss_pred CCcchhHHHHHHHHHhhcCCcee
Q psy7967 8 EGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 8 EGKsTttiGL~qal~~~lgk~~~ 30 (353)
-||||||-=|++.|. ..|+++.
T Consensus 117 nGKTTTt~ll~~iL~-~~g~~~~ 138 (438)
T PRK04663 117 NGKSTVTDLTGVMAK-AAGVKVA 138 (438)
T ss_pred CCHHHHHHHHHHHHH-HCCCCEE
Confidence 499999999999996 4677754
No 391
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=20.89 E-value=41 Score=30.71 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=11.0
Q ss_pred CCCCCcchhHHHHH
Q psy7967 5 PLGEGKSTTTIGLA 18 (353)
Q Consensus 5 P~GEGKsTttiGL~ 18 (353)
|-|+||||+---|.
T Consensus 33 pNGaGKSTll~~i~ 46 (212)
T cd03274 33 PNGSGKSNVIDSML 46 (212)
T ss_pred CCCCCHHHHHHHHH
Confidence 67999999865554
No 392
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=20.84 E-value=82 Score=22.69 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=31.2
Q ss_pred CCCCceeeeeeecCCCCCCccccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEEeecCCCCceeecccc
Q psy7967 243 INPDTISWRRVGQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLA 313 (353)
Q Consensus 243 IDp~~I~WkRvglg~~~~G~~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvVg~t~dg~PVta~DL~ 313 (353)
|+++.++|+|.... -..+.... ++.+=+|+++.--=..|+||+.++|+
T Consensus 16 i~~~dl~~~~~~~~-~~~~~~~~----------------------~~~~~~G~~a~~~i~~G~~i~~~~le 63 (63)
T PF08666_consen 16 ITAEDLTLVRVPAD-LPPGIFPD----------------------DIEEVVGKVARRDIPAGEPITPSMLE 63 (63)
T ss_dssp ECTTTEEEESCSCT-SSTSSBCG----------------------GHHHHTTEBBSS-B-TTEBEBGGGBT
T ss_pred EccCCEEEEEcccc-CCcccccc----------------------cccceeCceEeeEeCCcCEEcHHHcC
Confidence 47888999998644 33344332 24555677777777789999988874
No 393
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=20.69 E-value=53 Score=30.01 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=11.6
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
|-|.||||+..++..
T Consensus 29 ~sGsGKSTL~~~~i~ 43 (226)
T cd03270 29 VSGSGKSSLAFDTIY 43 (226)
T ss_pred CCCCCHHHHHHHHHH
Confidence 679999999755543
No 394
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=20.61 E-value=74 Score=31.57 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=20.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQ 35 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRq 35 (353)
|-|+||||+.-.|.+.+.. ...++++-+
T Consensus 168 ~tgSGKTTll~aL~~~ip~---~~ri~tiEd 195 (332)
T PRK13900 168 GTSTGKTTFTNAALREIPA---IERLITVED 195 (332)
T ss_pred CCCCCHHHHHHHHHhhCCC---CCeEEEecC
Confidence 5699999999999888753 233555544
No 395
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=20.52 E-value=52 Score=33.49 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=17.0
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
=|.|+||||+-.= |+=+=+||-|
T Consensus 38 GPSGcGKTTlLR~-------------IAGfe~p~~G 60 (352)
T COG3842 38 GPSGCGKTTLLRM-------------IAGFEQPSSG 60 (352)
T ss_pred CCCCCCHHHHHHH-------------HhCCCCCCCc
Confidence 3899999998532 3446788887
No 396
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=20.48 E-value=82 Score=32.89 Aligned_cols=36 Identities=42% Similarity=0.517 Sum_probs=27.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce-e--eEeeCCCCCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT-F--ACVRQPSQGPT 41 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~-~--~~lRqPS~GP~ 41 (353)
|-.+||||+|.=|+-=+.+ .|.+. + +-+=||+.||-
T Consensus 81 ~vDSGKSTLt~~LaN~~l~-rG~~v~iiDaDvGQ~ei~pP 119 (398)
T COG1341 81 PVDSGKSTLTTYLANKLLA-RGRKVAIIDADVGQSEIGPP 119 (398)
T ss_pred CcCcCHHHHHHHHHHHHhh-cCceEEEEeCCCCCcccCCC
Confidence 6689999999999988765 46653 2 23579999984
No 397
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=20.41 E-value=61 Score=29.82 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=12.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||+.-.|.=.|
T Consensus 33 ~NGsGKStll~Ai~~ll 49 (251)
T cd03273 33 LNGSGKSNILDAICFVL 49 (251)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999876665554
No 398
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=20.32 E-value=57 Score=32.69 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=27.4
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceee---EeeCCCCCCcccccCc
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFA---CVRQPSQGPTFGIKGS 47 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~---~lRqPS~GP~FGiKGG 47 (353)
=|.||||+|+-|+-.|+. ..+.++ -+-.|.+.=-||...=
T Consensus 11 GGtGKTTva~~la~~l~~--~~~~~l~DcDVe~PNl~l~l~~e~~ 53 (284)
T COG1149 11 GGTGKTTVAANLAVLLGD--KYKLVLADCDVEAPNLHLLLGVEVL 53 (284)
T ss_pred CCCChhhHHHHHHHHhcc--ccceEEEecCCCCCCcceEeccchh
Confidence 489999999999988853 223322 2567777777766543
No 399
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=20.29 E-value=1.1e+02 Score=31.16 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=40.0
Q ss_pred HHhhhhcCCCceecCcceecHHHHHhhhhcCCCc-CCCCCCCHHHHhhhhc--CCCCCCceee
Q psy7967 191 VSNGLKFGVPVVVKGKREFSIIQRRRLLRLDINR-TDPNTLTPEEITKFVR--LNINPDTISW 250 (353)
Q Consensus 191 i~n~~~~gvP~vv~g~R~fs~~~~rrl~klgInk-~~p~~lt~e~i~~~n~--L~IDp~~I~W 250 (353)
++.+.++|+|+++. |.-+.-|- |.+.|+.- |+.|.|++..+..-.+ ..+|.+.|.+
T Consensus 243 l~lLi~~G~~v~l~--r~n~fwqd--l~e~gv~Vlf~~d~L~~~~v~e~~rql~~~dk~~I~F 301 (322)
T PRK02797 243 LCLLIQLGKPVVLS--RDNPFWQD--LTEQGLPVLFTGDDLDEDIVREAQRQLASVDKNIIAF 301 (322)
T ss_pred HHHHHHCCCcEEEe--cCCchHHH--HHhCCCeEEecCCcccHHHHHHHHHHHHhhCcceeee
Confidence 45678899999886 44433333 88999999 8999999988865432 4666666653
No 400
>PHA03133 thymidine kinase; Provisional
Probab=20.17 E-value=80 Score=32.68 Aligned_cols=29 Identities=41% Similarity=0.656 Sum_probs=22.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
|.|-|||||+--|.++++ ....++.+=||
T Consensus 48 ~~GvGKTTt~~~l~~a~~---~~~~vl~~pEP 76 (368)
T PHA03133 48 PHGLGKTTTAAALAAALG---RRDDIEYVPEP 76 (368)
T ss_pred CCcCCHHHHHHHHHHhhC---CCCCeEEecCc
Confidence 679999999877777764 23337888888
No 401
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=20.15 E-value=60 Score=30.11 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.9
Q ss_pred CCCCCcchhHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQA 20 (353)
Q Consensus 5 P~GEGKsTttiGL~qa 20 (353)
|.|.||||++.-|.+.
T Consensus 26 ~SG~GKS~lAl~Li~r 41 (171)
T PF07475_consen 26 PSGIGKSELALELIKR 41 (171)
T ss_dssp STTSSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 6799999999999764
No 402
>KOG3062|consensus
Probab=20.10 E-value=1e+02 Score=30.77 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=29.0
Q ss_pred CCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccC
Q psy7967 8 EGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKG 46 (353)
Q Consensus 8 EGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKG 46 (353)
+||||-+.=|.++|.....|.++.-+-+-| ||++=
T Consensus 12 SGKstrA~~L~~~l~~~~~K~~v~ii~des----lg~~~ 46 (281)
T KOG3062|consen 12 SGKSTRAVELREALKERGTKQSVRIIDDES----LGIEK 46 (281)
T ss_pred CCchhHHHHHHHHHHhhcccceEEEechhh----cCCCC
Confidence 799999999999998764466888888888 77765
Done!