Query psy7967
Match_columns 353
No_of_seqs 307 out of 1615
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 23:26:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do6_A Formate--tetrahydrofola 100.0 6E-103 2E-107 784.6 14.1 243 1-347 51-417 (543)
2 3pzx_A Formate--tetrahydrofola 100.0 1.3E-92 4.3E-97 712.7 15.2 247 1-353 65-435 (557)
3 3do6_A Formate--tetrahydrofola 100.0 1.3E-40 4.4E-45 334.5 -3.8 94 232-327 134-240 (543)
4 3pzx_A Formate--tetrahydrofola 100.0 4.3E-39 1.5E-43 324.8 -2.0 94 232-327 148-254 (557)
5 2eo2_A Adult MALE hypothalamus 99.9 7.2E-25 2.5E-29 171.4 6.2 71 165-251 1-71 (71)
6 3cio_A ETK, tyrosine-protein k 94.7 0.0072 2.5E-07 55.6 0.8 43 4-47 112-157 (299)
7 3bfv_A CAPA1, CAPB2, membrane 94.7 0.0094 3.2E-07 54.1 1.5 43 4-47 90-135 (271)
8 1byi_A Dethiobiotin synthase; 94.2 0.018 6E-07 48.7 2.1 33 2-37 7-39 (224)
9 3la6_A Tyrosine-protein kinase 93.7 0.016 5.6E-07 53.3 1.0 43 4-47 100-145 (286)
10 1hyq_A MIND, cell division inh 92.8 0.032 1.1E-06 48.5 1.3 43 4-47 10-55 (263)
11 3q9l_A Septum site-determining 92.5 0.034 1.2E-06 47.7 1.2 43 4-47 10-55 (260)
12 2woo_A ATPase GET3; tail-ancho 92.3 0.028 9.4E-07 52.3 0.3 42 4-47 26-70 (329)
13 3kjh_A CO dehydrogenase/acetyl 92.3 0.04 1.4E-06 46.5 1.2 42 5-47 8-51 (254)
14 3zq6_A Putative arsenical pump 92.3 0.043 1.5E-06 50.7 1.5 42 5-47 22-65 (324)
15 2woj_A ATPase GET3; tail-ancho 92.2 0.038 1.3E-06 52.3 1.2 42 5-47 26-71 (354)
16 3fkq_A NTRC-like two-domain pr 92.1 0.3 1E-05 45.8 7.1 42 5-47 152-195 (373)
17 4dzz_A Plasmid partitioning pr 92.0 0.083 2.8E-06 43.6 2.8 28 4-32 9-36 (206)
18 1cp2_A CP2, nitrogenase iron p 91.9 0.078 2.7E-06 46.1 2.6 27 5-32 9-35 (269)
19 3ea0_A ATPase, para family; al 91.9 0.069 2.4E-06 45.4 2.2 39 5-43 13-54 (245)
20 3igf_A ALL4481 protein; two-do 91.7 0.019 6.6E-07 55.5 -1.5 41 5-47 10-52 (374)
21 3end_A Light-independent proto 91.6 0.088 3E-06 47.2 2.7 31 5-36 49-79 (307)
22 2afh_E Nitrogenase iron protei 91.6 0.089 3E-06 46.8 2.7 27 5-32 10-36 (289)
23 1g3q_A MIND ATPase, cell divis 91.2 0.067 2.3E-06 45.4 1.5 44 3-47 9-55 (237)
24 3of5_A Dethiobiotin synthetase 91.1 0.084 2.9E-06 47.0 2.1 38 1-41 9-47 (228)
25 2ph1_A Nucleotide-binding prot 91.1 0.12 4.1E-06 45.5 3.0 42 4-46 26-70 (262)
26 3k9g_A PF-32 protein; ssgcid, 90.5 0.11 3.9E-06 45.3 2.3 27 4-32 35-61 (267)
27 3fgn_A Dethiobiotin synthetase 90.1 0.12 4E-06 47.3 2.1 30 1-31 31-60 (251)
28 2oze_A ORF delta'; para, walke 90.0 0.15 5.2E-06 45.2 2.7 31 5-36 45-75 (298)
29 2wwf_A Thymidilate kinase, put 89.7 0.22 7.5E-06 41.4 3.3 36 5-42 18-53 (212)
30 4tmk_A Protein (thymidylate ki 89.6 0.22 7.7E-06 44.0 3.5 34 5-39 11-44 (213)
31 3lv8_A DTMP kinase, thymidylat 89.4 0.23 8E-06 44.9 3.5 35 5-40 35-69 (236)
32 3fwy_A Light-independent proto 89.3 0.21 7.1E-06 46.8 3.2 41 6-47 57-97 (314)
33 3ez2_A Plasmid partition prote 89.1 0.22 7.4E-06 46.8 3.2 41 5-45 117-164 (398)
34 3qxc_A Dethiobiotin synthetase 88.8 0.17 5.8E-06 46.0 2.1 30 1-31 26-55 (242)
35 3ug7_A Arsenical pump-driving 88.8 0.22 7.4E-06 46.8 2.9 42 5-47 34-77 (349)
36 3cwq_A Para family chromosome 88.0 0.25 8.6E-06 42.4 2.6 25 5-31 9-33 (209)
37 1wcv_1 SOJ, segregation protei 88.0 0.17 5.7E-06 44.3 1.5 42 4-46 14-57 (257)
38 1ihu_A Arsenical pump-driving 87.9 0.15 5.2E-06 50.5 1.4 41 5-47 16-59 (589)
39 3iqw_A Tail-anchored protein t 87.9 0.11 3.8E-06 49.1 0.3 42 5-47 24-67 (334)
40 1nn5_A Similar to deoxythymidy 87.5 0.38 1.3E-05 39.9 3.3 33 5-39 17-49 (215)
41 3ez9_A Para; DNA binding, wing 87.4 0.25 8.6E-06 46.5 2.5 42 5-46 120-168 (403)
42 3io3_A DEHA2D07832P; chaperone 87.3 0.13 4.5E-06 48.9 0.5 43 5-47 26-71 (348)
43 3ld9_A DTMP kinase, thymidylat 87.0 0.38 1.3E-05 43.3 3.3 36 5-40 29-64 (223)
44 2z0h_A DTMP kinase, thymidylat 86.8 0.46 1.6E-05 38.8 3.4 34 5-40 8-41 (197)
45 3v9p_A DTMP kinase, thymidylat 86.5 0.43 1.5E-05 42.9 3.3 35 5-40 33-70 (227)
46 2xj4_A MIPZ; replication, cell 86.3 0.41 1.4E-05 42.8 3.1 39 4-43 12-53 (286)
47 3pg5_A Uncharacterized protein 86.0 0.24 8.3E-06 46.4 1.5 32 5-37 10-41 (361)
48 4edh_A DTMP kinase, thymidylat 85.5 0.55 1.9E-05 41.4 3.4 33 5-39 14-46 (213)
49 3hjn_A DTMP kinase, thymidylat 83.8 0.76 2.6E-05 39.7 3.5 31 5-37 8-38 (197)
50 3a00_A Guanylate kinase, GMP k 83.8 0.64 2.2E-05 38.7 3.0 39 5-43 9-47 (186)
51 2plr_A DTMP kinase, probable t 82.1 0.86 2.9E-05 37.4 3.1 29 5-36 12-40 (213)
52 2xxa_A Signal recognition part 79.0 1.1 3.9E-05 43.8 3.3 27 5-31 108-134 (433)
53 2qor_A Guanylate kinase; phosp 77.0 1.1 3.6E-05 37.8 2.1 39 5-43 20-58 (204)
54 2pbr_A DTMP kinase, thymidylat 77.0 2.1 7.1E-05 34.6 3.7 31 5-37 8-38 (195)
55 4hlc_A DTMP kinase, thymidylat 76.8 1.5 5E-05 38.3 3.0 33 5-40 10-42 (205)
56 2px0_A Flagellar biosynthesis 73.8 2.1 7E-05 39.5 3.3 28 5-32 113-140 (296)
57 3tmk_A Thymidylate kinase; pho 73.8 1.5 5E-05 39.1 2.2 33 5-42 13-45 (216)
58 1xjc_A MOBB protein homolog; s 73.6 2.6 9E-05 36.5 3.7 32 5-37 12-43 (169)
59 2r8r_A Sensor protein; KDPD, P 73.6 2.7 9.3E-05 38.5 4.0 31 5-36 14-44 (228)
60 1lvg_A Guanylate kinase, GMP k 73.2 2 6.7E-05 36.5 2.8 36 5-40 12-47 (198)
61 3dm5_A SRP54, signal recogniti 69.8 2.5 8.7E-05 42.0 3.1 26 5-31 108-133 (443)
62 4eaq_A DTMP kinase, thymidylat 69.6 2.8 9.5E-05 36.8 3.0 33 5-40 34-66 (229)
63 1via_A Shikimate kinase; struc 69.2 1.9 6.4E-05 35.1 1.7 18 5-22 12-29 (175)
64 1yrb_A ATP(GTP)binding protein 69.2 4 0.00014 34.9 3.9 31 5-37 22-52 (262)
65 1zu4_A FTSY; GTPase, signal re 69.1 3 0.0001 39.0 3.2 27 5-32 113-139 (320)
66 3kb2_A SPBC2 prophage-derived 69.1 1.8 6.1E-05 34.3 1.5 18 5-22 9-26 (173)
67 2v54_A DTMP kinase, thymidylat 69.0 1.8 6.1E-05 35.6 1.6 34 5-42 12-45 (204)
68 1g5t_A COB(I)alamin adenosyltr 68.5 2.9 0.0001 37.4 3.0 28 3-31 34-61 (196)
69 3tau_A Guanylate kinase, GMP k 68.2 1.6 5.5E-05 37.1 1.2 36 5-40 16-51 (208)
70 1qhx_A CPT, protein (chloramph 68.0 1.5 5.1E-05 35.4 0.9 18 5-22 11-28 (178)
71 3trf_A Shikimate kinase, SK; a 68.0 1.9 6.6E-05 35.0 1.5 18 5-22 13-30 (185)
72 1kgd_A CASK, peripheral plasma 67.5 2.3 8E-05 35.2 2.0 36 5-40 13-48 (180)
73 2b8t_A Thymidine kinase; deoxy 67.4 3.4 0.00012 37.1 3.1 34 5-41 20-53 (223)
74 1kht_A Adenylate kinase; phosp 67.0 2.5 8.5E-05 34.0 2.0 19 5-23 11-29 (192)
75 1nks_A Adenylate kinase; therm 66.3 2.6 9E-05 33.8 2.0 23 5-28 9-31 (194)
76 2ocp_A DGK, deoxyguanosine kin 65.2 2.5 8.5E-05 36.5 1.8 30 5-40 10-39 (241)
77 1osn_A Thymidine kinase, VZV-T 65.1 2.2 7.5E-05 41.1 1.5 30 5-37 20-50 (341)
78 1j8m_F SRP54, signal recogniti 64.5 4.8 0.00017 37.1 3.7 27 5-32 106-132 (297)
79 1e6c_A Shikimate kinase; phosp 64.4 2.7 9.2E-05 33.6 1.7 18 5-22 10-27 (173)
80 3kl4_A SRP54, signal recogniti 64.1 3.9 0.00014 40.3 3.1 26 5-31 105-130 (433)
81 1zuh_A Shikimate kinase; alpha 63.7 2.8 9.6E-05 33.7 1.7 18 5-22 15-32 (168)
82 1kag_A SKI, shikimate kinase I 63.5 2.3 7.9E-05 34.1 1.2 17 5-21 12-28 (173)
83 1vma_A Cell division protein F 63.4 4.4 0.00015 37.8 3.2 26 5-31 112-137 (306)
84 1gtv_A TMK, thymidylate kinase 62.7 1.8 6E-05 35.9 0.3 31 5-37 8-38 (214)
85 2v3c_C SRP54, signal recogniti 62.6 4.3 0.00015 39.7 3.1 26 5-31 107-132 (432)
86 1ls1_A Signal recognition part 62.6 4.7 0.00016 36.9 3.2 27 4-31 105-131 (295)
87 1np6_A Molybdopterin-guanine d 62.4 6.4 0.00022 33.7 3.8 32 5-37 14-45 (174)
88 2iyv_A Shikimate kinase, SK; t 62.2 3.1 0.00011 33.9 1.7 18 5-22 10-27 (184)
89 1ihu_A Arsenical pump-driving 62.1 4.2 0.00015 40.2 3.0 40 4-44 334-375 (589)
90 3cm0_A Adenylate kinase; ATP-b 62.0 3.1 0.00011 33.7 1.7 18 5-22 12-29 (186)
91 2rhm_A Putative kinase; P-loop 61.7 3.2 0.00011 33.6 1.7 18 5-22 13-30 (193)
92 3uie_A Adenylyl-sulfate kinase 61.6 3.4 0.00012 34.6 1.9 23 5-28 33-55 (200)
93 3ec2_A DNA replication protein 61.2 4.5 0.00016 33.0 2.5 24 5-28 46-69 (180)
94 3vaa_A Shikimate kinase, SK; s 60.5 3.4 0.00012 34.6 1.7 18 5-22 33-50 (199)
95 1e2k_A Thymidine kinase; trans 60.1 3 0.0001 39.8 1.5 29 5-37 12-40 (331)
96 1of1_A Thymidine kinase; trans 59.7 3.7 0.00013 40.2 2.0 29 5-37 57-85 (376)
97 1htw_A HI0065; nucleotide-bind 59.6 3.2 0.00011 34.9 1.4 17 5-21 41-57 (158)
98 3ake_A Cytidylate kinase; CMP 59.5 3.7 0.00013 33.7 1.7 18 5-22 10-27 (208)
99 2c95_A Adenylate kinase 1; tra 59.5 3.4 0.00012 33.5 1.5 18 5-22 17-34 (196)
100 2bwj_A Adenylate kinase 5; pho 59.2 3.8 0.00013 33.4 1.7 18 5-22 20-37 (199)
101 3t61_A Gluconokinase; PSI-biol 58.9 3.8 0.00013 34.1 1.7 18 5-22 26-43 (202)
102 3lw7_A Adenylate kinase relate 58.8 3 0.0001 32.5 1.0 21 5-30 9-29 (179)
103 3lnc_A Guanylate kinase, GMP k 58.3 4.4 0.00015 34.6 2.1 37 5-42 35-72 (231)
104 2jaq_A Deoxyguanosine kinase; 58.1 3.7 0.00013 33.4 1.5 28 5-39 8-35 (205)
105 1tev_A UMP-CMP kinase; ploop, 57.8 3.8 0.00013 32.9 1.5 18 5-22 11-28 (196)
106 2pt5_A Shikimate kinase, SK; a 57.7 4.1 0.00014 32.4 1.7 18 5-22 8-25 (168)
107 1qf9_A UMP/CMP kinase, protein 57.7 3.9 0.00013 32.8 1.5 18 5-22 14-31 (194)
108 3ney_A 55 kDa erythrocyte memb 56.7 5.4 0.00018 35.2 2.4 37 5-41 27-63 (197)
109 1a7j_A Phosphoribulokinase; tr 56.4 4.6 0.00016 36.9 2.0 19 5-23 13-31 (290)
110 1xx6_A Thymidine kinase; NESG, 56.3 7 0.00024 34.0 3.0 36 5-43 16-51 (191)
111 4e22_A Cytidylate kinase; P-lo 56.2 3.6 0.00012 36.3 1.2 18 5-22 35-52 (252)
112 3upu_A ATP-dependent DNA helic 56.1 6.9 0.00024 37.5 3.2 27 5-32 53-79 (459)
113 2ze6_A Isopentenyl transferase 55.2 4.3 0.00015 36.0 1.5 18 5-22 9-26 (253)
114 2ffh_A Protein (FFH); SRP54, s 55.2 6.9 0.00024 38.5 3.1 26 5-31 106-131 (425)
115 2vli_A Antibiotic resistance p 55.0 3.6 0.00012 33.1 0.9 18 5-22 13-30 (183)
116 2gk6_A Regulator of nonsense t 53.9 7.1 0.00024 39.3 3.0 27 5-31 203-229 (624)
117 2j41_A Guanylate kinase; GMP, 53.8 4.9 0.00017 32.9 1.5 34 5-38 14-47 (207)
118 1knq_A Gluconate kinase; ALFA/ 53.3 5.4 0.00018 32.2 1.7 17 5-21 16-32 (175)
119 1uj2_A Uridine-cytidine kinase 53.1 4.4 0.00015 35.4 1.2 19 5-23 30-48 (252)
120 3a4m_A L-seryl-tRNA(SEC) kinas 53.0 7.7 0.00026 34.2 2.8 25 5-30 12-36 (260)
121 1p6x_A Thymidine kinase; P-loo 52.9 4.5 0.00015 38.7 1.3 30 5-37 15-44 (334)
122 1jbk_A CLPB protein; beta barr 52.9 6 0.0002 30.9 1.8 19 5-23 51-69 (195)
123 3iij_A Coilin-interacting nucl 52.8 5.2 0.00018 32.5 1.5 18 5-22 19-36 (180)
124 1cke_A CK, MSSA, protein (cyti 52.5 5.5 0.00019 33.3 1.7 17 5-21 13-29 (227)
125 2kjq_A DNAA-related protein; s 52.4 9.6 0.00033 31.2 3.1 19 5-23 44-62 (149)
126 3fb4_A Adenylate kinase; psych 52.0 5.4 0.00018 33.3 1.5 18 5-22 8-25 (216)
127 2j37_W Signal recognition part 51.7 8.7 0.0003 38.6 3.2 25 6-31 110-134 (504)
128 3asz_A Uridine kinase; cytidin 51.6 6.3 0.00022 32.7 1.9 18 5-22 14-31 (211)
129 3e1s_A Exodeoxyribonuclease V, 51.2 8.8 0.0003 38.7 3.2 27 5-32 212-238 (574)
130 2yvu_A Probable adenylyl-sulfa 51.0 10 0.00034 31.1 3.0 24 5-29 21-44 (186)
131 2cdn_A Adenylate kinase; phosp 50.9 6.1 0.00021 32.8 1.7 18 5-22 28-45 (201)
132 3jvv_A Twitching mobility prot 50.7 11 0.00038 35.8 3.7 33 5-38 131-163 (356)
133 2j9r_A Thymidine kinase; TK1, 50.6 11 0.00036 34.2 3.3 36 5-43 36-71 (214)
134 2chg_A Replication factor C sm 50.5 13 0.00045 29.6 3.6 19 5-23 46-64 (226)
135 2pez_A Bifunctional 3'-phospho 50.4 9.7 0.00033 30.9 2.8 24 5-29 13-36 (179)
136 1zak_A Adenylate kinase; ATP:A 50.4 5.8 0.0002 33.5 1.5 18 5-22 13-30 (222)
137 3c8u_A Fructokinase; YP_612366 50.0 7.9 0.00027 32.6 2.3 18 5-22 30-47 (208)
138 4eun_A Thermoresistant glucoki 49.4 7 0.00024 32.7 1.8 17 5-21 37-53 (200)
139 1ly1_A Polynucleotide kinase; 49.4 6.4 0.00022 31.3 1.5 15 5-19 10-24 (181)
140 2orw_A Thymidine kinase; TMTK, 49.3 10 0.00036 32.1 2.9 36 5-43 11-46 (184)
141 3bos_A Putative DNA replicatio 49.1 7.8 0.00027 31.9 2.1 19 5-23 60-78 (242)
142 2p65_A Hypothetical protein PF 49.0 5.5 0.00019 31.3 1.1 18 5-22 51-68 (187)
143 4b3f_X DNA-binding protein smu 48.5 10 0.00035 38.1 3.2 27 5-32 213-239 (646)
144 1ukz_A Uridylate kinase; trans 48.3 5.2 0.00018 33.0 0.9 17 5-21 23-39 (203)
145 2w0m_A SSO2452; RECA, SSPF, un 47.4 14 0.00049 30.2 3.4 24 5-29 31-54 (235)
146 2w58_A DNAI, primosome compone 47.0 11 0.00039 31.0 2.7 19 5-23 62-80 (202)
147 1m7g_A Adenylylsulfate kinase; 46.8 14 0.00046 31.2 3.2 24 5-28 33-56 (211)
148 2jeo_A Uridine-cytidine kinase 46.7 7.7 0.00026 33.7 1.7 18 5-22 33-50 (245)
149 2bbw_A Adenylate kinase 4, AK4 46.4 7.2 0.00025 33.7 1.5 18 5-22 35-52 (246)
150 1aky_A Adenylate kinase; ATP:A 46.3 7.3 0.00025 32.8 1.5 18 5-22 12-29 (220)
151 4a0g_A Adenosylmethionine-8-am 46.0 6.6 0.00023 41.5 1.4 41 1-42 39-83 (831)
152 3dl0_A Adenylate kinase; phosp 46.0 6 0.0002 33.1 0.9 17 5-21 8-24 (216)
153 3p32_A Probable GTPase RV1496/ 45.8 15 0.0005 34.2 3.6 32 5-37 87-118 (355)
154 2dr3_A UPF0273 protein PH0284; 45.7 15 0.00051 30.6 3.3 25 5-30 31-55 (247)
155 2if2_A Dephospho-COA kinase; a 45.6 6.4 0.00022 32.5 1.0 15 5-19 9-23 (204)
156 3r20_A Cytidylate kinase; stru 45.3 8.1 0.00028 34.9 1.7 18 5-22 17-34 (233)
157 1ak2_A Adenylate kinase isoenz 45.0 8.5 0.00029 33.0 1.7 18 5-22 24-41 (233)
158 1zp6_A Hypothetical protein AT 44.5 6.8 0.00023 31.8 1.0 15 5-19 17-31 (191)
159 3aez_A Pantothenate kinase; tr 44.3 14 0.00047 34.3 3.2 18 5-22 98-115 (312)
160 3tr0_A Guanylate kinase, GMP k 43.9 8.5 0.00029 31.5 1.5 16 5-20 15-30 (205)
161 1e4v_A Adenylate kinase; trans 43.8 8.5 0.00029 32.4 1.5 17 5-21 8-24 (214)
162 1rz3_A Hypothetical protein rb 43.8 14 0.00049 30.9 2.9 19 5-23 30-48 (201)
163 1zd8_A GTP:AMP phosphotransfer 43.6 6.7 0.00023 33.3 0.9 17 5-21 15-31 (227)
164 2qmh_A HPR kinase/phosphorylas 43.2 7.1 0.00024 35.5 1.0 31 5-35 42-72 (205)
165 2wjy_A Regulator of nonsense t 43.0 13 0.00046 39.1 3.2 26 5-30 379-404 (800)
166 1y63_A LMAJ004144AAA protein; 42.5 8.3 0.00028 31.9 1.2 16 5-20 18-33 (184)
167 2xb4_A Adenylate kinase; ATP-b 42.2 9.8 0.00034 32.6 1.7 27 5-36 8-38 (223)
168 1jjv_A Dephospho-COA kinase; P 42.1 7.8 0.00027 32.1 1.0 15 5-19 10-24 (206)
169 3be4_A Adenylate kinase; malar 41.7 9.5 0.00033 32.3 1.5 18 5-22 13-30 (217)
170 2bdt_A BH3686; alpha-beta prot 41.3 10 0.00034 31.0 1.6 15 5-19 10-24 (189)
171 1njg_A DNA polymerase III subu 40.8 13 0.00043 29.9 2.0 18 5-22 53-70 (250)
172 1uf9_A TT1252 protein; P-loop, 40.7 10 0.00035 30.8 1.5 15 5-19 16-30 (203)
173 3fdi_A Uncharacterized protein 40.3 9.2 0.00031 32.9 1.2 18 5-22 14-31 (201)
174 3d3q_A TRNA delta(2)-isopenten 40.2 8.9 0.00031 36.8 1.2 18 5-22 15-32 (340)
175 2grj_A Dephospho-COA kinase; T 39.2 11 0.00038 32.5 1.5 17 5-21 20-36 (192)
176 2p67_A LAO/AO transport system 38.8 25 0.00084 32.5 3.9 33 5-38 64-96 (341)
177 2xzl_A ATP-dependent helicase 38.5 18 0.00061 38.1 3.2 28 5-32 383-410 (802)
178 1vht_A Dephospho-COA kinase; s 37.9 9.8 0.00034 31.9 1.0 15 5-19 12-26 (218)
179 3nwj_A ATSK2; P loop, shikimat 37.7 13 0.00043 33.7 1.7 18 5-22 56-73 (250)
180 2h92_A Cytidylate kinase; ross 37.1 11 0.00038 31.4 1.2 17 5-21 11-27 (219)
181 4gp7_A Metallophosphoesterase; 36.9 9.3 0.00032 31.5 0.7 12 5-16 17-28 (171)
182 2qgz_A Helicase loader, putati 36.8 23 0.00078 32.4 3.3 23 5-28 160-183 (308)
183 1ex7_A Guanylate kinase; subst 36.6 15 0.00052 31.9 2.0 37 5-41 9-45 (186)
184 3syl_A Protein CBBX; photosynt 36.2 16 0.00053 32.0 2.0 19 5-23 75-93 (309)
185 3exa_A TRNA delta(2)-isopenten 35.5 9.7 0.00033 36.7 0.6 18 5-22 11-28 (322)
186 3tqc_A Pantothenate kinase; bi 35.4 21 0.00071 33.7 2.9 18 5-22 100-117 (321)
187 1gvn_B Zeta; postsegregational 34.4 15 0.0005 33.4 1.6 17 5-21 41-57 (287)
188 2qz4_A Paraplegin; AAA+, SPG7, 34.3 16 0.00054 31.0 1.7 30 5-39 47-76 (262)
189 2p5t_B PEZT; postsegregational 34.3 11 0.00037 33.1 0.7 17 5-21 40-56 (253)
190 3tlx_A Adenylate kinase 2; str 33.9 15 0.00051 32.1 1.5 17 5-21 37-53 (243)
191 2ehv_A Hypothetical protein PH 33.9 30 0.001 28.8 3.4 15 5-19 38-52 (251)
192 1q3t_A Cytidylate kinase; nucl 33.6 16 0.00053 31.4 1.6 17 5-21 24-40 (236)
193 3hdt_A Putative kinase; struct 33.5 16 0.00055 32.4 1.7 18 5-22 22-39 (223)
194 3a8t_A Adenylate isopentenyltr 33.2 8.4 0.00029 37.1 -0.2 18 5-22 48-65 (339)
195 1sxj_C Activator 1 40 kDa subu 32.7 18 0.00061 32.7 1.9 18 5-22 54-71 (340)
196 3crm_A TRNA delta(2)-isopenten 32.3 12 0.00042 35.6 0.8 18 5-22 13-30 (323)
197 2qt1_A Nicotinamide riboside k 32.2 14 0.00048 30.7 1.0 16 5-20 29-44 (207)
198 2wsm_A Hydrogenase expression/ 32.1 26 0.00091 28.9 2.7 19 5-23 38-56 (221)
199 3eph_A TRNA isopentenyltransfe 32.1 17 0.00057 36.1 1.7 18 5-22 10-27 (409)
200 1odf_A YGR205W, hypothetical 3 32.0 19 0.00066 33.0 2.0 19 5-23 39-57 (290)
201 4fcw_A Chaperone protein CLPB; 32.0 19 0.00065 31.4 1.9 18 5-22 55-72 (311)
202 3foz_A TRNA delta(2)-isopenten 31.7 13 0.00044 35.7 0.8 18 5-22 18-35 (316)
203 1d2n_A N-ethylmaleimide-sensit 31.3 19 0.00064 31.3 1.7 17 5-21 72-88 (272)
204 1l8q_A Chromosomal replication 31.2 27 0.00093 31.1 2.8 19 5-23 45-63 (324)
205 1ofh_A ATP-dependent HSL prote 31.1 20 0.00069 30.9 1.9 18 5-22 58-75 (310)
206 1w36_D RECD, exodeoxyribonucle 30.9 28 0.00095 35.1 3.1 19 5-23 172-190 (608)
207 3e70_C DPA, signal recognition 30.9 30 0.001 32.4 3.2 25 5-30 137-161 (328)
208 3tqf_A HPR(Ser) kinase; transf 30.9 18 0.00061 32.5 1.5 16 5-20 24-39 (181)
209 4a74_A DNA repair and recombin 30.6 18 0.0006 29.9 1.4 16 5-20 33-48 (231)
210 2r62_A Cell division protease 30.5 20 0.00069 30.8 1.8 18 5-22 52-69 (268)
211 3uk6_A RUVB-like 2; hexameric 30.3 21 0.00071 32.1 1.9 18 5-22 78-95 (368)
212 1g8f_A Sulfate adenylyltransfe 30.3 19 0.00064 36.4 1.7 19 5-23 403-421 (511)
213 1tue_A Replication protein E1; 29.9 16 0.00055 33.4 1.1 17 5-21 66-82 (212)
214 3t15_A Ribulose bisphosphate c 29.9 18 0.00062 32.6 1.4 18 5-22 44-61 (293)
215 1lv7_A FTSH; alpha/beta domain 29.7 22 0.00075 30.6 1.8 17 5-21 53-69 (257)
216 1sxj_D Activator 1 41 kDa subu 29.7 23 0.00079 31.3 2.1 18 5-22 66-83 (353)
217 1nlf_A Regulatory protein REPA 29.0 34 0.0012 30.0 3.1 18 5-22 38-55 (279)
218 1p5z_B DCK, deoxycytidine kina 29.0 9.6 0.00033 33.3 -0.6 17 5-21 32-48 (263)
219 1rj9_A FTSY, signal recognitio 28.8 31 0.0011 31.8 2.9 24 5-29 110-133 (304)
220 3b9q_A Chloroplast SRP recepto 28.3 32 0.0011 31.7 2.8 19 5-23 108-126 (302)
221 3h4m_A Proteasome-activating n 28.2 19 0.00065 31.2 1.2 17 5-21 59-75 (285)
222 1iqp_A RFCS; clamp loader, ext 28.2 26 0.00087 30.5 2.0 18 5-22 54-71 (327)
223 1ixz_A ATP-dependent metallopr 27.8 21 0.0007 30.7 1.4 17 5-21 57-73 (254)
224 2eyu_A Twitching motility prot 27.8 25 0.00085 31.6 1.9 18 5-22 33-50 (261)
225 1sq5_A Pantothenate kinase; P- 27.7 24 0.00083 32.0 1.9 17 5-21 88-104 (308)
226 1in4_A RUVB, holliday junction 27.6 25 0.00084 32.1 1.9 18 5-22 59-76 (334)
227 1znw_A Guanylate kinase, GMP k 27.5 22 0.00074 29.9 1.4 16 5-20 28-43 (207)
228 1ltq_A Polynucleotide kinase; 27.0 23 0.00079 31.1 1.5 16 5-20 10-25 (301)
229 1jr3_A DNA polymerase III subu 26.5 27 0.00091 31.1 1.9 18 5-22 46-63 (373)
230 2ewv_A Twitching motility prot 26.5 48 0.0016 31.3 3.7 31 5-36 144-174 (372)
231 1sxj_E Activator 1 40 kDa subu 26.4 22 0.00077 31.7 1.4 17 5-21 44-60 (354)
232 2l95_A Crammer, LP06209P; cyst 26.3 32 0.0011 25.9 2.0 15 219-235 55-69 (80)
233 1hqc_A RUVB; extended AAA-ATPa 26.1 29 0.00099 30.4 2.0 18 5-22 46-63 (324)
234 1sxj_B Activator 1 37 kDa subu 25.1 30 0.001 30.0 1.9 18 5-22 50-67 (323)
235 2cvh_A DNA repair and recombin 25.1 26 0.00087 28.7 1.4 15 5-19 28-42 (220)
236 2qby_A CDC6 homolog 1, cell di 24.9 54 0.0018 28.8 3.5 20 5-24 53-72 (386)
237 2r2a_A Uncharacterized protein 24.8 34 0.0012 29.7 2.2 17 5-21 13-29 (199)
238 3b9p_A CG5977-PA, isoform A; A 24.7 24 0.00082 30.8 1.2 29 5-38 62-90 (297)
239 1iy2_A ATP-dependent metallopr 24.5 26 0.00087 30.8 1.4 17 5-21 81-97 (278)
240 2f1r_A Molybdopterin-guanine d 24.5 15 0.00052 31.1 -0.1 19 5-23 10-28 (171)
241 1ye8_A Protein THEP1, hypothet 24.5 32 0.0011 29.0 1.9 17 5-21 8-24 (178)
242 1n0w_A DNA repair protein RAD5 24.5 26 0.0009 29.2 1.4 16 5-20 32-47 (243)
243 1m8p_A Sulfate adenylyltransfe 24.4 46 0.0016 33.7 3.3 29 5-34 404-432 (573)
244 2vp4_A Deoxynucleoside kinase; 24.4 19 0.00065 30.9 0.5 27 5-37 28-54 (230)
245 2chq_A Replication factor C sm 24.1 32 0.0011 29.7 1.9 18 5-22 46-63 (319)
246 2c9o_A RUVB-like 1; hexameric 24.1 27 0.00092 33.5 1.5 18 5-22 71-88 (456)
247 1cr0_A DNA primase/helicase; R 23.7 64 0.0022 28.4 3.8 25 5-29 43-67 (296)
248 1um8_A ATP-dependent CLP prote 23.7 27 0.00091 32.1 1.4 17 5-21 80-96 (376)
249 1z6g_A Guanylate kinase; struc 23.6 30 0.001 29.7 1.6 15 5-19 31-45 (218)
250 3kta_A Chromosome segregation 23.4 27 0.00092 28.2 1.2 17 5-21 34-50 (182)
251 3hws_A ATP-dependent CLP prote 23.4 27 0.00093 31.9 1.4 17 5-21 59-75 (363)
252 2v1u_A Cell division control p 23.1 34 0.0012 30.3 1.9 19 5-23 52-70 (387)
253 3n70_A Transport activator; si 23.1 32 0.0011 27.3 1.6 17 5-21 32-48 (145)
254 3pxg_A Negative regulator of g 22.9 36 0.0012 32.9 2.2 18 5-22 209-226 (468)
255 3m6a_A ATP-dependent protease 22.9 22 0.00074 35.4 0.6 19 5-23 116-134 (543)
256 2f6r_A COA synthase, bifunctio 22.7 30 0.001 31.0 1.5 14 5-18 83-96 (281)
257 1p9r_A General secretion pathw 22.6 48 0.0016 32.2 3.0 31 5-37 175-205 (418)
258 2ga8_A Hypothetical 39.9 kDa p 22.5 36 0.0012 33.1 2.0 20 5-24 32-51 (359)
259 3u61_B DNA polymerase accessor 22.2 29 0.00098 30.8 1.2 17 5-21 56-72 (324)
260 3czq_A Putative polyphosphate 22.1 21 0.00073 34.0 0.4 30 6-37 95-124 (304)
261 2zts_A Putative uncharacterize 21.7 64 0.0022 26.7 3.2 26 5-30 38-63 (251)
262 1xwi_A SKD1 protein; VPS4B, AA 21.5 59 0.002 29.6 3.2 31 5-39 53-83 (322)
263 3lfu_A DNA helicase II; SF1 he 21.3 56 0.0019 31.9 3.2 18 5-22 30-47 (647)
264 2obn_A Hypothetical protein; s 21.3 49 0.0017 32.0 2.7 29 2-31 158-186 (349)
265 3cf0_A Transitional endoplasmi 21.3 31 0.001 30.9 1.2 17 5-21 57-73 (301)
266 4gib_A Beta-phosphoglucomutase 21.2 49 0.0017 28.1 2.4 63 185-250 119-192 (250)
267 2orv_A Thymidine kinase; TP4A 21.2 61 0.0021 29.8 3.2 36 5-43 27-62 (234)
268 2www_A Methylmalonic aciduria 21.1 71 0.0024 29.7 3.7 33 5-38 82-114 (349)
269 2og2_A Putative signal recogni 20.8 52 0.0018 31.4 2.8 24 5-29 165-188 (359)
270 2z4s_A Chromosomal replication 20.8 64 0.0022 31.0 3.4 19 5-23 138-156 (440)
271 1fnn_A CDC6P, cell division co 20.7 41 0.0014 30.0 1.9 18 5-22 52-69 (389)
272 3b85_A Phosphate starvation-in 20.6 39 0.0013 29.3 1.7 14 5-18 30-43 (208)
273 2qby_B CDC6 homolog 3, cell di 20.4 58 0.002 29.1 2.8 19 5-23 53-71 (384)
274 2gks_A Bifunctional SAT/APS ki 20.3 57 0.0019 32.8 3.0 24 5-29 380-403 (546)
275 1s96_A Guanylate kinase, GMP k 20.2 37 0.0013 29.7 1.5 17 5-21 24-40 (219)
No 1
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=100.00 E-value=5.8e-103 Score=784.59 Aligned_cols=243 Identities=51% Similarity=0.820 Sum_probs=227.6
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch--------------------------------
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH-------------------------------- 48 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa-------------------------------- 48 (353)
|||||+|||||||||||+|||+ ++||++++|||||||||||||||||
T Consensus 51 ItPTPaGEGKtTttiGL~~aL~-~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQViPMediNLHfTGD~HAItaAnNLL 129 (543)
T 3do6_A 51 VTPTPAGEGKTTTSIGLSMSLN-RIGKKSIVTLREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDMHAVASAHNLL 129 (543)
T ss_dssp SSCCTTCCCHHHHHHHHHHHHH-HTTCCEEEEECCCCHHHHHHSCCSTTEETTEEEESHHHHHTTTTSHHHHHHHHHHHH
T ss_pred cCCCCCCCCccchHHHHHHHHH-hcCCeeEEEEecCCCCCcCCcccccCCCcceeecchhhccccccchHHHHHHHHHHH
Confidence 8999999999999999999997 8999999999999999999999994
Q ss_pred --------------------------------------------------------------hhhh-h------------
Q psy7967 49 --------------------------------------------------------------MALL-L------------ 53 (353)
Q Consensus 49 --------------------------------------------------------------ma~l-l------------ 53 (353)
|||| |
T Consensus 130 aA~iDn~i~~gn~L~IDp~~I~WkRv~D~NDR~LR~IvvGlGg~~~G~~re~gFdITvASEiMAILcLa~dl~DLk~Rlg 209 (543)
T 3do6_A 130 AAVLDSHIKHGNELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAASEVMAILALSENMKDLKERLG 209 (543)
T ss_dssp HHHHHHHHHTTCTTCEEEEEECCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGGSHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHhccCccCCCCCeEEEEecccccCceeeeeEECCCCCCCCCccccceeEEehhhhhhHHHhcCCHHHHHHHhc
Confidence 8998 5
Q ss_pred -----------------hhccchhhhhhhhccCCceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCCeEEe
Q psy7967 54 -----------------SGLTGAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVT 116 (353)
Q Consensus 54 -----------------~~~~Ga~~vll~da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~~vvT 116 (353)
|++.|+|++|||||++|||||||||||+|||||||||||||||||+||++||+|+ |||||
T Consensus 210 ~ivvay~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAHGcnSviAtk~ALkla---DyvVT 286 (543)
T 3do6_A 210 KIIVALDADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGTNSIIATKMAMKLS---EYTVT 286 (543)
T ss_dssp TCEEEEETTSCEEEHHHHTCHHHHHHHTTTTTSCEEEEETTSCEEEECCCCCSSSSCCBCCHHHHHHHHHHC---SEEEE
T ss_pred CEEEEEcCCCCeEehHhcccchhHHHHHHhhcCccceeeccCCeeEEecCccccccccchHHHHHHHHHhcc---CeEEE
Confidence 9999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ecccccccccccccccccccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHHHhhhh
Q psy7967 117 EAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSNGLK 196 (353)
Q Consensus 117 eAGfg~dlg~EkF~nik~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~ 196 (353)
|||||+|||+|||||||||.+|++|||+|||||+||||||||++. +++.+||+++|++||+||.+||+|+++
T Consensus 287 EAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~--------~~l~~enl~al~~G~~NL~kHIen~~~ 358 (543)
T 3do6_A 287 EAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANL--------KNIHEENLEALKEGFKNLRVHVENLRK 358 (543)
T ss_dssp EBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCG--------GGTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCCh--------hhcCccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCCCceecCcceecHHHHHhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCceeeeeeecCCCCCCccccccccchhhhhH
Q psy7967 197 FGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWRRVGQSPTEKNMERSTGFDISVASEV 276 (353)
Q Consensus 197 ~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~I~WkRvglg~~~~G~~RetgFdITvASEI 276 (353)
||+|+||+ ||+|+ .|++.++
T Consensus 359 fGvpvVVa-----------------iN~F~-----------------------------tDT~aEi-------------- 378 (543)
T 3do6_A 359 FNLPVVVA-----------------LNRFS-----------------------------TDTEKEI-------------- 378 (543)
T ss_dssp TTCCEEEE-----------------EECCT-----------------------------TCCHHHH--------------
T ss_pred cCCCeEEE-----------------EeCCC-----------------------------CCCHHHH--------------
Confidence 99999999 99998 5554333
Q ss_pred HHHHHhcCCHHHHHHHhcCeEEeecCCCCceeeccccccccCcceEEeecccccCcccHHHHHHHHHHHhh
Q psy7967 277 MAALALSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATE 347 (353)
Q Consensus 277 MAILcLA~dl~DLk~RLgrIvVg~t~dg~PVta~DL~a~~~GAm~a~~~~~w~~Gg~ga~~la~~v~~~~e 347 (353)
++-++ .|++.|+ ++++|+||++||+|++|||++|++++|
T Consensus 379 -----------~~v~~--------------------~~~~~G~-~~~~s~~wa~GG~G~~~LA~~Vv~~~e 417 (543)
T 3do6_A 379 -----------AYVVK--------------------ECEKLGV-RVAVSEVFKKGSEGGVELAKAVAEAAK 417 (543)
T ss_dssp -----------HHHHH--------------------HHHTTTC-EEEEECHHHHGGGGSHHHHHHHHHHCC
T ss_pred -----------HHHHH--------------------HHHHcCC-CEEEechhhccchhHHHHHHHHHHHhc
Confidence 22221 1345677 789999999999999999999999998
No 2
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=100.00 E-value=1.3e-92 Score=712.75 Aligned_cols=247 Identities=55% Similarity=0.922 Sum_probs=227.5
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCch--------------------------------
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSH-------------------------------- 48 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGGa-------------------------------- 48 (353)
++|||+|||||||+++|+++|+ ++||+++++||+||+||+||+|||+
T Consensus 65 ~~PTP~GEGKSTtsinLA~alA-~~GkkVLLiLR~Psl~~~FGikggaaggG~sqv~Pme~~nLhfTGD~hAItaAnNLl 143 (557)
T 3pzx_A 65 ITPTPAGEGKTTTSVGLTDALA-RLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLL 143 (557)
T ss_dssp SCCCTTCCCHHHHHHHHHHHHH-HTTCCEEEEECCCCSHHHHHTCCCCEEETTEEEECHHHHHSSCSSHHHHHHHHHHHH
T ss_pred CCCCCCCCCchhHHHHHHHHHH-HcCCeEEEEeCCCCccccCCCCCCCCCCCceeeeechhcccCccCchhhHHHhhhHH
Confidence 5899999999999999999997 7999999999999999999999982
Q ss_pred --------------------------------------------------------------hhhh-h------------
Q psy7967 49 --------------------------------------------------------------MALL-L------------ 53 (353)
Q Consensus 49 --------------------------------------------------------------ma~l-l------------ 53 (353)
|||| |
T Consensus 144 aA~iDn~i~~gn~l~idp~~i~w~Rv~D~NdR~LR~i~~glg~~~~G~~re~gFdITvASEiMAIlcLa~dl~Dlk~Rlg 223 (557)
T 3pzx_A 144 AAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFS 223 (557)
T ss_dssp HHHHHHHHHTTCTTCBCGGGCCCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGGCHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCccCCeeEEeeeecCChHHhhhhhhccCCCCCCCccccceeEEehhhhhhHHHhcCCHHHHHHHhh
Confidence 8998 5
Q ss_pred -----------------hhccchhhhhhhhccCCceeeeecCcceeeecccchhhhhcchhHHHHHHHHhhccCCCeEEe
Q psy7967 54 -----------------SGLTGAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVT 116 (353)
Q Consensus 54 -----------------~~~~Ga~~vll~da~~pNL~qtleg~p~~iH~gpfANiahg~~s~~ad~~al~l~g~~~~vvT 116 (353)
|++.|+|++|||||++|||||||||||+|||||||||||||||||+||++||+|+ |||||
T Consensus 224 ~ivv~~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~vHgGPFANIAHGcnSviAtk~ALkl~---dyvVT 300 (557)
T 3pzx_A 224 RIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLA---DYVVT 300 (557)
T ss_dssp HCEEEEBTTSCEEETGGGTCHHHHHHHTTTTTSCEEEEETTCCEEEECCCCCSSSSCCBCCHHHHHHHHHHC---SEEEE
T ss_pred CEEEEEcCCCCeeeHHHcccchhHHHHHHhhcCccceeeccCCeeEEecCcccccccCchHHHHHHHHHhcc---CeEEE
Confidence 9999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ecccccccccccccccccccCCCCCCeEEEEeehHHHHhcCCCCCCCCCCCCCCCCccccHHHHHhhhhhHHHHHHhhhh
Q psy7967 117 EAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQKGCVNLEKHVSNGLK 196 (353)
Q Consensus 117 eAGfg~dlg~EkF~nik~r~~g~~p~a~vlvAtiralk~hgg~~~~~~~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~ 196 (353)
|||||+|||+|||||||||.+|++|||+|||||+||||||||++. +++.+||+++|++||+||.+||+|+++
T Consensus 301 EAGFGaDlGaEKF~dIKcR~~gl~P~avVlVATvRALK~hGG~~~--------~~l~~en~~al~~G~~NL~kHien~~~ 372 (557)
T 3pzx_A 301 EAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPK--------SDLATENLEALREGFANLEKHIENIGK 372 (557)
T ss_dssp EBSSCTTTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHHTTCCG--------GGTTSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ecccCcCcchhhhcCCcccccCCCCCEEEEEeehHHHHhcCCCCh--------hhcCccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999985 899999999999999999999999999
Q ss_pred cCCCceecCcceecHHHHHhhhhcCCCcCCCCCCCHHHHhhhhcCCCCCCceeeeeeecCCCCCCccccccccchhhhhH
Q psy7967 197 FGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWRRVGQSPTEKNMERSTGFDISVASEV 276 (353)
Q Consensus 197 ~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~lt~e~i~~~n~L~IDp~~I~WkRvglg~~~~G~~RetgFdITvASEI 276 (353)
||+|+||+ ||+|+ .|++.++
T Consensus 373 fGvpvVVa-----------------iN~F~-----------------------------tDT~aEi-------------- 392 (557)
T 3pzx_A 373 FGVPAVVA-----------------INAFP-----------------------------TDTEAEL-------------- 392 (557)
T ss_dssp TTCCEEEE-----------------EECCT-----------------------------TCCHHHH--------------
T ss_pred cCCCeEEE-----------------EeCCC-----------------------------CCCHHHH--------------
Confidence 99999999 99998 5554333
Q ss_pred HHHHHhcCCHHHHHHHhcCeEEeecCCCCceeeccccccccCcceEEeecccccCcccHHHHHHHHHHHhhcccCCC
Q psy7967 277 MAALALSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQF 353 (353)
Q Consensus 277 MAILcLA~dl~DLk~RLgrIvVg~t~dg~PVta~DL~a~~~GAm~a~~~~~w~~Gg~ga~~la~~v~~~~e~~~~~~ 353 (353)
++-++ .|.+.|+ ++++| |++||+|++|||++|++++|+++++|
T Consensus 393 -----------~~v~~--------------------~~~~~G~-~~~~~--wa~GG~G~~~LA~~Vv~~~~~~~~~f 435 (557)
T 3pzx_A 393 -----------NLLYE--------------------LCAKAGA-EVALS--WAKGGEGGLELARKVLQTLESRPSNF 435 (557)
T ss_dssp -----------HHHHH--------------------HCCSSEE-EEECH--HHHGGGGGHHHHHHHHHHHHHCCCCC
T ss_pred -----------HHHHH--------------------HHHHcCC-CEEEE--ecccchhHHHHHHHHHHHHhcCCCCc
Confidence 33322 1344676 68888 99999999999999999999755554
No 3
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=100.00 E-value=1.3e-40 Score=334.46 Aligned_cols=94 Identities=34% Similarity=0.523 Sum_probs=89.0
Q ss_pred HHHHhhhhcCCCCCCceeeeee-------------ecCCCCCCccccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEE
Q psy7967 232 PEEITKFVRLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMV 298 (353)
Q Consensus 232 ~e~i~~~n~L~IDp~~I~WkRv-------------glg~~~~G~~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvV 298 (353)
++||||+|+|+|||++|+|+|| |||++.||+||||+||||||||||||||||+|++|||+|||||||
T Consensus 134 Dn~i~~gn~L~IDp~~I~WkRv~D~NDR~LR~IvvGlGg~~~G~~re~gFdITvASEiMAILcLa~dl~DLk~Rlg~ivv 213 (543)
T 3do6_A 134 DSHIKHGNELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAASEVMAILALSENMKDLKERLGKIIV 213 (543)
T ss_dssp HHHHHTTCTTCEEEEEECCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGGSHHHHHHHHCSSHHHHHHHHHTCEE
T ss_pred HHHHhccCccCCCCCeEEEEecccccCceeeeeEECCCCCCCCCccccceeEEehhhhhhHHHhcCCHHHHHHHhcCEEE
Confidence 3688899999999999999999 799999999999999999999999999999999999999999999
Q ss_pred eecCCCCceeeccccccccCcceEEeecc
Q psy7967 299 AEDKEGRPVTLDDLAAKQAGAHDAVVCEN 327 (353)
Q Consensus 299 g~t~dg~PVta~DL~a~~~GAm~a~~~~~ 327 (353)
|||+||+|||++||++ .|||.+.+.+.
T Consensus 214 ay~~~g~PVta~DL~~--~GAmt~LLkDA 240 (543)
T 3do6_A 214 ALDADRKIVRISDLGI--QGAMAVLLKDA 240 (543)
T ss_dssp EEETTSCEEEHHHHTC--HHHHHHHTTTT
T ss_pred EEcCCCCeEehHhccc--chhHHHHHHhh
Confidence 9999999999999999 99998776653
No 4
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=100.00 E-value=4.3e-39 Score=324.75 Aligned_cols=94 Identities=45% Similarity=0.686 Sum_probs=89.5
Q ss_pred HHHHhhhhcCCCCCCceeeeee-------------ecCCCCCCccccccccchhhhhHHHHHHhcCCHHHHHHHhcCeEE
Q psy7967 232 PEEITKFVRLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMV 298 (353)
Q Consensus 232 ~e~i~~~n~L~IDp~~I~WkRv-------------glg~~~~G~~RetgFdITvASEIMAILcLA~dl~DLk~RLgrIvV 298 (353)
++||||+|+|+|||++|+|+|| |+|++.||+|||||||||||||||||||||+|++|||+|||||||
T Consensus 148 Dn~i~~gn~l~idp~~i~w~Rv~D~NdR~LR~i~~glg~~~~G~~re~gFdITvASEiMAIlcLa~dl~Dlk~Rlg~ivv 227 (557)
T 3pzx_A 148 DNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVV 227 (557)
T ss_dssp HHHHHTTCTTCBCGGGCCCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGGCHHHHHHHHCSSHHHHHHHHHHCEE
T ss_pred HHHHhhcCCCCccCCeeEEeeeecCChHHhhhhhhccCCCCCCCccccceeEEehhhhhhHHHhcCCHHHHHHHhhCEEE
Confidence 4789999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred eecCCCCceeeccccccccCcceEEeecc
Q psy7967 299 AEDKEGRPVTLDDLAAKQAGAHDAVVCEN 327 (353)
Q Consensus 299 g~t~dg~PVta~DL~a~~~GAm~a~~~~~ 327 (353)
|||+||+|||++||++ .|||.+.+.+.
T Consensus 228 ~~~~~g~PVta~DL~~--~GAmt~LLkDA 254 (557)
T 3pzx_A 228 GYTYDGKPVTAGDLEA--QGSMALLMKDA 254 (557)
T ss_dssp EEBTTSCEEETGGGTC--HHHHHHHTTTT
T ss_pred EEcCCCCeeeHHHccc--chhHHHHHHhh
Confidence 9999999999999999 99998776653
No 5
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.91 E-value=7.2e-25 Score=171.44 Aligned_cols=71 Identities=49% Similarity=0.765 Sum_probs=65.5
Q ss_pred CCCCCCCCccccHHHHHhhhhhHHHHHHhhhhcCCCceecCcceecHHHHHhhhhcCCCcCCCCCCCHHHHhhhhcCCCC
Q psy7967 165 GQPLKPEYTEENLDLVQKGCVNLEKHVSNGLKFGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITKFVRLNIN 244 (353)
Q Consensus 165 ~~~~~~e~~~en~~~l~~g~~nl~~hi~n~~~~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~lt~e~i~~~n~L~ID 244 (353)
|.++|||.+|+|.++|.+ .||. ++|+|+||++|+|||+||||||+||++||+|||.+|.+||||
T Consensus 1 ~~~mfHE~TQsD~aLy~R---------------LVP~-~kG~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~FaRLdID 64 (71)
T 2eo2_A 1 GSSGSSGSTQTDKALYNR---------------LVPL-VNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNID 64 (71)
T ss_dssp CCCCSCCSSCSHHHHHHH---------------HSCC-SSSSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHHHTCCC
T ss_pred CCccccccccchHHHHHh---------------hCCC-CCCeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhceecccC
Confidence 457899999999987764 3685 789999999999999999999999999999999999999999
Q ss_pred CCceeee
Q psy7967 245 PDTISWR 251 (353)
Q Consensus 245 p~~I~Wk 251 (353)
|++|+|+
T Consensus 65 P~TITw~ 71 (71)
T 2eo2_A 65 PATITWQ 71 (71)
T ss_dssp STTCCCC
T ss_pred ccceeeC
Confidence 9999996
No 6
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.71 E-value=0.0072 Score=55.62 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=36.0
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccccCc
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIKGS 47 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiKGG 47 (353)
+.-||||||+++.|+.+|. ..|+++.+. +|+|++.-.||++..
T Consensus 112 ~kgG~GKTtva~nLA~~lA-~~G~rVLLID~D~r~~~l~~~~~~~~~ 157 (299)
T 3cio_A 112 ATPDSGKTFVSSTLAAVIA-QSDQKVLFIDADLRRGYSHNLFTVSNE 157 (299)
T ss_dssp SSSSSCHHHHHHHHHHHHH-HTTCCEEEEECCTTTCCHHHHTTCCCS
T ss_pred CCCCCChHHHHHHHHHHHH-hCCCcEEEEECCCCCccHHHHcCCCCC
Confidence 3459999999999999997 579988653 799999999998763
No 7
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.68 E-value=0.0094 Score=54.10 Aligned_cols=43 Identities=33% Similarity=0.431 Sum_probs=36.3
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccccCc
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIKGS 47 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiKGG 47 (353)
+.-||||||++..|+.+|. ..|+++.+. +|.|++.-.||++..
T Consensus 90 ~kgG~GKTt~a~nLA~~lA-~~G~rVLLID~D~~~~~l~~~~~~~~~ 135 (271)
T 3bfv_A 90 EAPGAGKSTIAANLAVAYA-QAGYKTLIVDGDMRKPTQHYIFNLPNN 135 (271)
T ss_dssp SSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCSSSCCHHHHTTCCCS
T ss_pred CCCCCcHHHHHHHHHHHHH-hCCCeEEEEeCCCCCccHHHHcCCCCC
Confidence 3459999999999999997 579998754 899999989998764
No 8
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.24 E-value=0.018 Score=48.74 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=26.2
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 2 TPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 2 tPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
+-|.-|+||||++..|+.+|. +.|+++.. ..|.
T Consensus 7 ~s~kgGvGKTt~a~nLa~~la-~~G~rVll--~dp~ 39 (224)
T 1byi_A 7 TGTDTEVGKTVASCALLQAAK-AAGYRTAG--YKPV 39 (224)
T ss_dssp EESSTTSCHHHHHHHHHHHHH-HTTCCEEE--ECSE
T ss_pred EECCCCCCHHHHHHHHHHHHH-HCCCCEEE--Ecce
Confidence 346679999999999999997 56998765 3563
No 9
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.71 E-value=0.016 Score=53.25 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=35.9
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceee---EeeCCCCCCcccccCc
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFA---CVRQPSQGPTFGIKGS 47 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~---~lRqPS~GP~FGiKGG 47 (353)
+--||||||++..|+.+|. ..|+++.+ .+|.|++.-.||++..
T Consensus 100 ~kgG~GKTtva~nLA~~lA-~~G~rVLLID~D~~~~~l~~~~~~~~~ 145 (286)
T 3la6_A 100 VSPSIGMTFVCANLAAVIS-QTNKRVLLIDCDMRKGYTHELLGTNNV 145 (286)
T ss_dssp SSSSSSHHHHHHHHHHHHH-TTTCCEEEEECCTTTCCHHHHHTCCCT
T ss_pred CCCCCcHHHHHHHHHHHHH-hCCCCEEEEeccCCCCCHHHHhCCCCC
Confidence 3459999999999999997 56998864 4789999999998764
No 10
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.75 E-value=0.032 Score=48.45 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=34.3
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccccCc
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIKGS 47 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiKGG 47 (353)
+.-|+||||++..|+.+|.+ .|+++.+. .++|++...||++..
T Consensus 10 ~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~l~~~~~ 55 (263)
T 1hyq_A 10 GKGGTGKTTITANLGVALAQ-LGHDVTIVDADITMANLELILGMEGL 55 (263)
T ss_dssp SSSCSCHHHHHHHHHHHHHH-TTCCEEEEECCCSSSSHHHHTTCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHh-CCCcEEEEECCCCCCCcchhcCCCCC
Confidence 46699999999999999974 68887543 467888888888754
No 11
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.55 E-value=0.034 Score=47.74 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=34.6
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceee---EeeCCCCCCcccccCc
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFA---CVRQPSQGPTFGIKGS 47 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~---~lRqPS~GP~FGiKGG 47 (353)
+.-|+||||++..|+.+|.+ .|+++.+ -.+||++.-.||+...
T Consensus 10 ~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~~~~~lg~~~~ 55 (260)
T 3q9l_A 10 GKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFAIGLRNLDLIMGCERR 55 (260)
T ss_dssp SSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSSCCHHHHTTCGGG
T ss_pred CCCCCcHHHHHHHHHHHHHh-CCCcEEEEECCCCCCChhHHhCCCCc
Confidence 55699999999999999974 6988765 3468888888887653
No 12
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.34 E-value=0.028 Score=52.30 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=33.3
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccccCc
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIKGS 47 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiKGG 47 (353)
+.-|+||||++..|+.+|. ..|+++.+. .| ||+.-.||++.|
T Consensus 26 gkGGvGKTTva~~LA~~lA-~~G~rVllvD~D~~-~~l~~~l~~~~~ 70 (329)
T 2woo_A 26 GKGGVGKTTTSCSLAIQMS-KVRSSVLLISTDPA-HNLSDAFGTKFG 70 (329)
T ss_dssp CSSSSSHHHHHHHHHHHHH-TSSSCEEEEECCTT-CHHHHHHSSCCC
T ss_pred CCCCCcHHHHHHHHHHHHH-HCCCeEEEEECCCC-cCHHHHhCCcCC
Confidence 4569999999999999997 569988653 35 887778888754
No 13
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.29 E-value=0.04 Score=46.46 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=32.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe--eCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV--RQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l--RqPS~GP~FGiKGG 47 (353)
.-|+||||++..|+.+|. ..|+++.+.= -|||+.-.||+...
T Consensus 8 kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~~l~~~lg~~~~ 51 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMA-SDYDKIYAVDGDPDSCLGQTLGLSIE 51 (254)
T ss_dssp SSSHHHHHHHHHHHHHHT-TTCSCEEEEEECTTSCHHHHTTCCHH
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCCcChHHHhCCCcc
Confidence 458999999999999997 5698875431 24777777887654
No 14
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.26 E-value=0.043 Score=50.70 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=33.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe--eCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV--RQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l--RqPS~GP~FGiKGG 47 (353)
.-|+||||++..|+.+|.+ .|+++.+.= -+||+.-.||++-+
T Consensus 22 KGGvGKTTvA~~LA~~lA~-~G~rVLlvD~D~~~~l~~~l~~~~~ 65 (324)
T 3zq6_A 22 KGGVGKTTISAATALWMAR-SGKKTLVISTDPAHSLSDSLEREIG 65 (324)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCCEEEEECCSSCCHHHHHTSCCC
T ss_pred CCCchHHHHHHHHHHHHHH-CCCcEEEEeCCCCcCHHHHhCCcCC
Confidence 4699999999999999975 699986532 26777788888754
No 15
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.22 E-value=0.038 Score=52.25 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=34.1
Q ss_pred CCCCCcchhHHHHHHHHHh-hcCCceeeE---eeCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAA-HKHKNTFAC---VRQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~-~lgk~~~~~---lRqPS~GP~FGiKGG 47 (353)
.-|+||||++..|+.+|+. ..|+++.+. +| ||+.-.||++.+
T Consensus 26 KGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~ 71 (354)
T 2woj_A 26 KGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFG 71 (354)
T ss_dssp STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCC
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCC
Confidence 3599999999999999962 579998653 54 888888999865
No 16
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.11 E-value=0.3 Score=45.83 Aligned_cols=42 Identities=26% Similarity=0.175 Sum_probs=32.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe--eCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV--RQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l--RqPS~GP~FGiKGG 47 (353)
.-|+||||++..|+.+|.+ .|+++.+.= ++|++.-.||....
T Consensus 152 KGGvGKTT~a~nLA~~La~-~g~rVlliD~D~~~~l~~~lg~~~~ 195 (373)
T 3fkq_A 152 CGGVGTSTVAAACAIAHAN-MGKKVFYLNIEQCGTTDVFFQAEGN 195 (373)
T ss_dssp STTSSHHHHHHHHHHHHHH-HTCCEEEEECCTTCCHHHHCCCSCS
T ss_pred CCCChHHHHHHHHHHHHHh-CCCCEEEEECCCCCCHHHHcCCCCC
Confidence 4599999999999999975 698875421 67777777777654
No 17
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.95 E-value=0.083 Score=43.62 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
+.-|+||||++..|+.+|.+ .|+++.+.
T Consensus 9 ~kgG~GKTt~a~~la~~la~-~g~~vlli 36 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSR-SGYNIAVV 36 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCCccHHHHHHHHHHHHHH-CCCeEEEE
Confidence 45699999999999999975 68887543
No 18
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.88 E-value=0.078 Score=46.14 Aligned_cols=27 Identities=37% Similarity=0.330 Sum_probs=22.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
.=|+||||+++.|+.+|. ..|+++.+.
T Consensus 9 KGGvGKTT~a~nLA~~la-~~G~~Vlli 35 (269)
T 1cp2_A 9 KGGIGKSTTTQNLTSGLH-AMGKTIMVV 35 (269)
T ss_dssp CTTSSHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred CCCCcHHHHHHHHHHHHH-HCCCcEEEE
Confidence 459999999999999997 569887653
No 19
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.87 E-value=0.069 Score=45.44 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=28.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFG 43 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FG 43 (353)
.-|+||||++..|+.+|.+..|+++.+. .+.|++.-.||
T Consensus 13 kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~ 54 (245)
T 3ea0_A 13 KGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLS 54 (245)
T ss_dssp STTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTC
T ss_pred CCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhC
Confidence 4699999999999999964228887643 33367666673
No 20
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=91.74 E-value=0.019 Score=55.51 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=34.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce--eeEeeCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT--FACVRQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~--~~~lRqPS~GP~FGiKGG 47 (353)
.-|+||||++.-|+.+|. ..|+++ +-+ ||||+.-.||++-+
T Consensus 10 kGG~GKTt~a~~la~~la-~~g~~vllvd~-~~~~l~~~~~~~~~ 52 (374)
T 3igf_A 10 KSGVARTKIAIAAAKLLA-SQGKRVLLAGL-AEPVLPLLLEQTLT 52 (374)
T ss_dssp SBHHHHHHHHHHHHHHHH-HTTCCEEEEEC-SCSHHHHHHTSCCC
T ss_pred CCCCcHHHHHHHHHHHHH-HCCCCeEEEeC-CCCChHHhhCCCCC
Confidence 348999999999999997 469987 446 99999999999854
No 21
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.57 E-value=0.088 Score=47.20 Aligned_cols=31 Identities=32% Similarity=0.317 Sum_probs=25.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
.-|+||||+++.|+.+|.+ .|+++.+.=-.|
T Consensus 49 KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~ 79 (307)
T 3end_A 49 KGGIGKSTTSSNLSAAFSI-LGKRVLQIGCDP 79 (307)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCCEEEEEESS
T ss_pred CCCccHHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 5699999999999999975 699886654445
No 22
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.56 E-value=0.089 Score=46.76 Aligned_cols=27 Identities=44% Similarity=0.396 Sum_probs=22.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
.=|+||||+++.|+.+|. ..|+++.+.
T Consensus 10 KGGvGKTT~a~nLA~~La-~~G~rVlli 36 (289)
T 2afh_E 10 KGGIGKSTTTQNLVAALA-EMGKKVMIV 36 (289)
T ss_dssp CTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCcCcHHHHHHHHHHHHH-HCCCeEEEE
Confidence 459999999999999997 469887643
No 23
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.19 E-value=0.067 Score=45.42 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=33.9
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccccCc
Q psy7967 3 PTPLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIKGS 47 (353)
Q Consensus 3 PTP~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiKGG 47 (353)
-+.-|+||||++..|+.+|.+ .|+++.+. .++|++.-.||++..
T Consensus 9 s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~~~~~~ 55 (237)
T 1g3q_A 9 SGKGGTGKTTVTANLSVALGD-RGRKVLAVDGDLTMANLSLVLGVDDP 55 (237)
T ss_dssp CSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTSCCHHHHTTCCCC
T ss_pred cCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCCCCCChhHhcCCCCC
Confidence 356799999999999999974 68887542 356777777887654
No 24
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=91.13 E-value=0.084 Score=46.97 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC-CCCc
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS-QGPT 41 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS-~GP~ 41 (353)
||-|.-|+||||+|.||+++|.+ .|+++.. +-|- .||.
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~-~G~~V~~--~KPv~~g~~ 47 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEH-QNIKSLC--LKPVASGQS 47 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHH-TTCCEEE--ECSEEESBC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH-CCCeeEE--ecceeecCc
Confidence 46788999999999999999974 6888653 6663 3554
No 25
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.07 E-value=0.12 Score=45.51 Aligned_cols=42 Identities=33% Similarity=0.253 Sum_probs=30.4
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCcccccC
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFGIKG 46 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FGiKG 46 (353)
+.-|+||||+++.|+.+|.+ .|+++.+. .+.|++.-.||+..
T Consensus 26 ~kGGvGKTT~a~nLA~~la~-~G~~VlliD~D~~~~~l~~~l~~~~ 70 (262)
T 2ph1_A 26 GKGGVGKSTVTALLAVHYAR-QGKKVGILDADFLGPSIPILFGLRN 70 (262)
T ss_dssp SSSCTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCCHHHHHTTCCS
T ss_pred CCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCCCCCHHHHhcCCC
Confidence 45699999999999999974 69887653 34455444566653
No 26
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.50 E-value=0.11 Score=45.29 Aligned_cols=27 Identities=37% Similarity=0.386 Sum_probs=22.3
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
..-|+||||++..|+.+|. .|+++.+.
T Consensus 35 ~kGGvGKTT~a~~LA~~la--~g~~Vlli 61 (267)
T 3k9g_A 35 IKGGVGKSTSAIILATLLS--KNNKVLLI 61 (267)
T ss_dssp SSSSSCHHHHHHHHHHHHT--TTSCEEEE
T ss_pred CCCCchHHHHHHHHHHHHH--CCCCEEEE
Confidence 3569999999999999996 58887554
No 27
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=90.09 E-value=0.12 Score=47.32 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=25.6
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
|+.|.-|+||||+|.||+++|.+ .|+++..
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~-~G~~V~~ 60 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQ-AGIDVAV 60 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHH-TTCCEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHH-CCCeEEE
Confidence 57899999999999999999975 6887643
No 28
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.03 E-value=0.15 Score=45.24 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=24.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
.-|+||||+++.|+.+|. ..|+++.+.=-.|
T Consensus 45 KGGvGKTT~a~nLA~~la-~~G~rVlliD~D~ 75 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTD-KLNLKVLMIDKDL 75 (298)
T ss_dssp SSSSSHHHHHHHHHHHHH-HTTCCEEEEEECT
T ss_pred CCCchHHHHHHHHHHHHH-hCCCeEEEEeCCC
Confidence 569999999999999997 5798876533333
No 29
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.73 E-value=0.22 Score=41.37 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=28.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTF 42 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~F 42 (353)
+-|+||||++--|++.|+. .+..+ ..+|+|..|..+
T Consensus 18 ~~GsGKST~~~~L~~~l~~-~~~~~-~~~~~~~~~~~~ 53 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYLKN-NNVEV-KHLYFPNRETGI 53 (212)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCCE-EEEESSCTTSHH
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCcE-EEEecCCCCCcH
Confidence 5699999999999999974 46666 569999755443
No 30
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.57 E-value=0.22 Score=44.04 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=28.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
|-|.||||.+--|.+.|.. .|.+.+...|+|+-.
T Consensus 11 ~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t 44 (213)
T 4tmk_A 11 LEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGT 44 (213)
T ss_dssp CTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSS
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCC
Confidence 5699999999999999975 577567889999633
No 31
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.39 E-value=0.23 Score=44.85 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=29.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
|-|.||||.+.-|.+.|.. .|.+++..+|+|+-.|
T Consensus 35 ~~GsGKsT~~~~l~~~l~~-~~~~~~~~~rep~~t~ 69 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQQ-NGIDHITRTREPGGTL 69 (236)
T ss_dssp STTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSH
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCCeeeeecCCCCCH
Confidence 5799999999999999975 6888678899997433
No 32
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=89.31 E-value=0.21 Score=46.77 Aligned_cols=41 Identities=34% Similarity=0.411 Sum_probs=31.9
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcccccCc
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGS 47 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FGiKGG 47 (353)
=|.||||||+-|+-||. ..||++.+.==.|....++++-++
T Consensus 57 GGVGKTTtavNLA~aLA-~~GkkVllID~Dpq~~s~~~l~~~ 97 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFS-ILGKRVLQIGCDPKHDSTFTLTGS 97 (314)
T ss_dssp TTSSHHHHHHHHHHHHH-HTTCCEEEEEESSSCCTTHHHHTS
T ss_pred CccCHHHHHHHHHHHHH-HCCCeEEEEecCCCCcccccccCC
Confidence 38999999999999996 589998776667765556555444
No 33
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=89.14 E-value=0.22 Score=46.77 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=28.5
Q ss_pred CCCCCcchhHHHHHHHHHh-----hcCCceeeEeeCC--CCCCccccc
Q psy7967 5 PLGEGKSTTTIGLAQALAA-----HKHKNTFACVRQP--SQGPTFGIK 45 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~-----~lgk~~~~~lRqP--S~GP~FGiK 45 (353)
.=|+||||+++-|+.+|.. ..|+++.+.==.| |+.-.||++
T Consensus 117 KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~ 164 (398)
T 3ez2_A 117 KGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHK 164 (398)
T ss_dssp SSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCH
T ss_pred CCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCc
Confidence 4599999999999999974 3688886543344 333345544
No 34
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=88.80 E-value=0.17 Score=46.02 Aligned_cols=30 Identities=33% Similarity=0.205 Sum_probs=25.4
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
|+.|.-|.|||++|.||+++|.+ .|.++..
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~-~G~~V~~ 55 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNA-CGVKTIL 55 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHH-TTCCEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHh-CCCceEE
Confidence 57899999999999999999975 6877543
No 35
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=88.78 E-value=0.22 Score=46.76 Aligned_cols=42 Identities=21% Similarity=0.100 Sum_probs=32.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEee--CCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVR--QPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lR--qPS~GP~FGiKGG 47 (353)
.-|+||||++..|+.+|.+ .|+++.+.== +||+.-.||++-+
T Consensus 34 KGGvGKTTvA~~LA~~lA~-~G~rVLlvD~D~~~~l~~~l~~~~~ 77 (349)
T 3ug7_A 34 KGGVGKTTMSAATGVYLAE-KGLKVVIVSTDPAHSLRDIFEQEFG 77 (349)
T ss_dssp SSSTTHHHHHHHHHHHHHH-SSCCEEEEECCTTCHHHHHHCSCCC
T ss_pred CCCccHHHHHHHHHHHHHH-CCCeEEEEeCCCCCCHHHHhCCCCC
Confidence 5699999999999999974 6999865422 5666677887643
No 36
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=87.97 E-value=0.25 Score=42.42 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=20.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
.-|+||||+++.|+.+|.+ .| ++.+
T Consensus 9 KGGvGKTT~a~~LA~~la~-~g-~Vll 33 (209)
T 3cwq_A 9 KGGVGKTTTAVHLSAYLAL-QG-ETLL 33 (209)
T ss_dssp STTSSHHHHHHHHHHHHHT-TS-CEEE
T ss_pred CCCCcHHHHHHHHHHHHHh-cC-CEEE
Confidence 4599999999999999974 68 6544
No 37
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=87.96 E-value=0.17 Score=44.33 Aligned_cols=42 Identities=31% Similarity=0.389 Sum_probs=29.0
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeEeeCC--CCCCcccccC
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFACVRQP--SQGPTFGIKG 46 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~lRqP--S~GP~FGiKG 46 (353)
+.-|+||||+++.|+.+|.+ .|+++.+.==.| ++.-.||+..
T Consensus 14 ~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~~~~l~~~~ 57 (257)
T 1wcv_1 14 QKGGVGKTTTAINLAAYLAR-LGKRVLLVDLDPQGNATSGLGVRA 57 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHTTCCC
T ss_pred CCCCchHHHHHHHHHHHHHH-CCCCEEEEECCCCcCHHHHhCCCC
Confidence 45699999999999999974 688876543334 2222466543
No 38
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=87.95 E-value=0.15 Score=50.52 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=33.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee---EeeCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA---CVRQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~---~lRqPS~GP~FGiKGG 47 (353)
.-|+||||++..|+.+|.+ .|+++.+ -. +||++-.||++-+
T Consensus 16 kGGvGKTT~a~~lA~~lA~-~G~rVLlvd~D~-~~~l~~~l~~~~~ 59 (589)
T 1ihu_A 16 KGGVGKTSISCATAIRLAE-QGKRVLLVSTDP-ASNVGQVFSQTIG 59 (589)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCCEEEEECCT-TCCHHHHTTSCCC
T ss_pred CCcCHHHHHHHHHHHHHHH-CCCcEEEEECCC-CcCHHHHhCCccc
Confidence 3699999999999999974 6999765 24 5888889998755
No 39
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=87.86 E-value=0.11 Score=49.06 Aligned_cols=42 Identities=26% Similarity=0.234 Sum_probs=33.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee--EeeCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA--CVRQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~--~lRqPS~GP~FGiKGG 47 (353)
.-|+||||++.-|+.+|. ..|+++.+ +=++||+.-.||.+-+
T Consensus 24 kGGvGKTt~a~~lA~~la-~~g~~vllid~D~~~~l~~~l~~~~~ 67 (334)
T 3iqw_A 24 KGGVGKTTTSCSLAIQLA-KVRRSVLLLSTDPAHNLSDAFSQKFG 67 (334)
T ss_dssp STTSSHHHHHHHHHHHHT-TSSSCEEEEECCSSCHHHHHHTSCCC
T ss_pred CCCccHHHHHHHHHHHHH-hCCCcEEEEECCCCCChhHHhccccC
Confidence 469999999999999996 57998743 3378888888887543
No 40
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.47 E-value=0.38 Score=39.85 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=26.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
+-|+||||++--|++.|+. .+..+ ..+|+|.-|
T Consensus 17 ~~GsGKsT~~~~L~~~l~~-~~~~v-~~~~~~~~~ 49 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEALCA-AGHRA-ELLRFPERS 49 (215)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCCE-EEEESSCTT
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCcE-EEeeCCCCC
Confidence 5699999999999999974 46665 678999643
No 41
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=87.44 E-value=0.25 Score=46.50 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=21.4
Q ss_pred CCCCCcchhHHHHHHHHHh-----hcCCceeeEee--CCCCCCcccccC
Q psy7967 5 PLGEGKSTTTIGLAQALAA-----HKHKNTFACVR--QPSQGPTFGIKG 46 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~-----~lgk~~~~~lR--qPS~GP~FGiKG 46 (353)
.=|+||||+|.-|+.+|.. ..|+++.+.== |.|+.-.||+..
T Consensus 120 KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~ 168 (403)
T 3ez9_A 120 KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTH 168 (403)
T ss_dssp --------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----
T ss_pred CCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCc
Confidence 3599999999999999973 46888755422 445666677665
No 42
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=87.31 E-value=0.13 Score=48.93 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=34.2
Q ss_pred CCCCCcchhHHHHHHHHHh-hcCCceee--EeeCCCCCCcccccCc
Q psy7967 5 PLGEGKSTTTIGLAQALAA-HKHKNTFA--CVRQPSQGPTFGIKGS 47 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~-~lgk~~~~--~lRqPS~GP~FGiKGG 47 (353)
.-|+||||++.-|+.+|.. ..|+++.+ +=++||+.-.||++-|
T Consensus 26 kGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~~~~~~~~ 71 (348)
T 3io3_A 26 KGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQKFG 71 (348)
T ss_dssp STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHHTSCCC
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHHHhccccC
Confidence 4699999999999999962 56888743 2378888888998755
No 43
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.00 E-value=0.38 Score=43.28 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=29.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
+-|.||||.+--|.+.|....|.+++...|+|.-.|
T Consensus 29 ~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~ 64 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTL 64 (223)
T ss_dssp STTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSH
T ss_pred CCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCCh
Confidence 569999999999999997526888777689998444
No 44
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.82 E-value=0.46 Score=38.82 Aligned_cols=34 Identities=35% Similarity=0.309 Sum_probs=26.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
|-|+||||++--|++.|.. .|... ...|+|.-.|
T Consensus 8 ~~GsGKsT~~~~L~~~l~~-~g~~v-~~~~~~~~~~ 41 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQYLEK-RGKKV-ILKREPGGTE 41 (197)
T ss_dssp STTSSHHHHHHHHHHHHHH-CCC-E-EEEESSCSSH
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCeE-EEeeCCCCCc
Confidence 5699999999999998864 47765 5789987444
No 45
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.52 E-value=0.43 Score=42.87 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=24.9
Q ss_pred CCCCCcchhHHHHHHHHHhhc---CCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHK---HKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~l---gk~~~~~lRqPS~GP 40 (353)
|-|.||||.+--|.+.|.... |.++ ...|+|.-.|
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~~t~ 70 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPGGTR 70 (227)
T ss_dssp CC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSSSSH
T ss_pred CCCCCHHHHHHHHHHHHHhhccccceee-eeecCCCCCh
Confidence 679999999999999997532 7665 5799996444
No 46
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=86.35 E-value=0.41 Score=42.84 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=28.4
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE---eeCCCCCCccc
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC---VRQPSQGPTFG 43 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~---lRqPS~GP~FG 43 (353)
+.-|+||||++..|+.+|. ..|+++.+. .|||++.-.||
T Consensus 12 ~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 12 EKGGAGKSTIAVHLVTALL-YGGAKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp SSSCTTHHHHHHHHHHHHH-HTTCCEEEEECCTTTCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH-HCCCcEEEEECCCCCCCHHHHhC
Confidence 5669999999999999997 469887643 34555444443
No 47
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=86.00 E-value=0.24 Score=46.43 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=24.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
.-|+||||+|+-|+.+|+ ..|+++.+.==.|.
T Consensus 10 KGGvGKTT~a~nLA~~LA-~~G~rVLlID~D~q 41 (361)
T 3pg5_A 10 KGGVGKTTLSTNVAHYFA-LQGKRVLYVDCDPQ 41 (361)
T ss_dssp SCCHHHHHHHHHHHHHHH-HTTCCEEEEECCTT
T ss_pred CCCCcHHHHHHHHHHHHH-hCCCcEEEEEcCCC
Confidence 459999999999999997 47998865433343
No 48
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.47 E-value=0.55 Score=41.37 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=27.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
|-|.||||.+--|.+.|.. .|.++ ...|+|.-.
T Consensus 14 ~~gsGKsT~~~~l~~~l~~-~~~~v-~~~~~p~~~ 46 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERLRE-RGIEV-QLTREPGGT 46 (213)
T ss_dssp STTSSHHHHHHHHHHHHHT-TTCCE-EEEESSCSS
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCCc-ccccCCCCC
Confidence 5799999999999999974 57765 688999633
No 49
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=83.83 E-value=0.76 Score=39.74 Aligned_cols=31 Identities=39% Similarity=0.367 Sum_probs=26.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
+-|+||||.+--|.+.|.+ .|.++ ...|+|.
T Consensus 8 ~DGsGKsTq~~~L~~~L~~-~g~~v-~~treP~ 38 (197)
T 3hjn_A 8 IDGSGKSTQIQLLAQYLEK-RGKKV-ILKREPG 38 (197)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCCE-EEEESSC
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCcE-EEEECCC
Confidence 4699999999999999975 57764 6689996
No 50
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=83.80 E-value=0.64 Score=38.73 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=30.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFG 43 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FG 43 (353)
|-|.||||+.--|..-+....|.....+-|.|.-|-+.|
T Consensus 9 psGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g 47 (186)
T 3a00_A 9 PSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNG 47 (186)
T ss_dssp SSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBT
T ss_pred CCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCC
Confidence 789999999988887765456777778889898876533
No 51
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=82.14 E-value=0.86 Score=37.43 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=23.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
|-|+||||++--|++.|+. .| .+...++|
T Consensus 12 ~~GsGKsT~~~~L~~~l~~-~g--~~~~~~~~ 40 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWIEL-KR--DVYLTEWN 40 (213)
T ss_dssp CTTSSHHHHHHHHHHHHTT-TS--CEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHhh-cC--CEEEecCC
Confidence 5699999999999999864 45 35667888
No 52
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=79.03 E-value=1.1 Score=43.77 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
+-|+|||||+..|+.+|....|+++.+
T Consensus 108 ~~GvGKTT~a~~LA~~l~~~~G~kVll 134 (433)
T 2xxa_A 108 LQGAGKTTSVGKLGKFLREKHKKKVLV 134 (433)
T ss_dssp STTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 569999999999999997422888754
No 53
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=77.00 E-value=1.1 Score=37.84 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=27.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFG 43 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FG 43 (353)
|-|.||||++--|.+.+........-.+.|+|-.|+.-|
T Consensus 20 ~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g 58 (204)
T 2qor_A 20 PSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNG 58 (204)
T ss_dssp CTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBT
T ss_pred CCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCC
Confidence 689999999988877663213333346789988777543
No 54
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=76.95 E-value=2.1 Score=34.60 Aligned_cols=31 Identities=29% Similarity=0.278 Sum_probs=23.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
+-|+||||.+--|++.|.. .|.. +...|+|+
T Consensus 8 ~~GsGKsT~~~~L~~~l~~-~g~~-~i~~d~~~ 38 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYLKQ-KGYF-VSLYREPG 38 (195)
T ss_dssp STTSCHHHHHHHHHHHHHH-TTCC-EEEEESSC
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCe-EEEEeCCC
Confidence 5699999999999988853 4665 45678885
No 55
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=76.76 E-value=1.5 Score=38.33 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=25.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
+-|+||||.+--|.+.|.+ |.+ +...|||.-.|
T Consensus 10 ~dGsGKsTq~~~L~~~L~~--~~~-v~~~~eP~~t~ 42 (205)
T 4hlc_A 10 PEGSGKTTVINEVYHRLVK--DYD-VIMTREPGGVP 42 (205)
T ss_dssp CTTSCHHHHHHHHHHHHTT--TSC-EEEEESSTTCH
T ss_pred CCCCcHHHHHHHHHHHHHC--CCC-EEEeeCCCCCh
Confidence 4599999999999999952 655 45689996443
No 56
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=73.80 E-value=2.1 Score=39.52 Aligned_cols=28 Identities=36% Similarity=0.329 Sum_probs=21.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
|-|+||||++.-|+..+....|+++...
T Consensus 113 ~~GsGKTTl~~~LA~~l~~~~G~~V~lv 140 (296)
T 2px0_A 113 STGAGKTTTLAKLAAISMLEKHKKIAFI 140 (296)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4599999999999999964358765443
No 57
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=73.78 E-value=1.5 Score=39.14 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=24.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTF 42 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~F 42 (353)
|-|.||||.+--|.+.|.. ....+|+|.-|.-+
T Consensus 13 ~~g~GKst~~~~l~~~l~~-----~~~~~~ep~~~t~~ 45 (216)
T 3tmk_A 13 LDRTGKTTQCNILYKKLQP-----NCKLLKFPERSTRI 45 (216)
T ss_dssp CSSSSHHHHHHHHHHHHCS-----SEEEEESSCTTSHH
T ss_pred CCCCCHHHHHHHHHHHhcc-----cceEEEecCCCChH
Confidence 5799999999999988853 25678999534333
No 58
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=73.61 E-value=2.6 Score=36.46 Aligned_cols=32 Identities=13% Similarity=-0.081 Sum_probs=25.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|.|+||||++..|.+.|.. .|.++.+.-+.|.
T Consensus 12 ~sGsGKTTl~~~L~~~l~~-~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 12 YKHSGKTTLMEKWVAAAVR-EGWRVGTVKHHGH 43 (169)
T ss_dssp CTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC-
T ss_pred CCCCCHHHHHHHHHHhhHh-cCCeeeEEEeCCC
Confidence 5699999999999999974 5777766666664
No 59
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=73.61 E-value=2.7 Score=38.55 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=26.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
|-|.||||+++.++..+.. .|+++.+..=.|
T Consensus 14 kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~ 44 (228)
T 2r8r_A 14 APGVGKTYAMLQAAHAQLR-QGVRVMAGVVET 44 (228)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred CCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCC
Confidence 6799999999999999974 699987777776
No 60
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=73.18 E-value=2 Score=36.51 Aligned_cols=36 Identities=31% Similarity=0.287 Sum_probs=25.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
|-|.||||+.--|..-+....|......-|.|..|-
T Consensus 12 psGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~ 47 (198)
T 1lvg_A 12 PSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE 47 (198)
T ss_dssp CTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC
T ss_pred CCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc
Confidence 789999999887766543234555555667788775
No 61
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=69.78 E-value=2.5 Score=41.98 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=21.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
|-|+|||||+..|+..|.+ .|+++.+
T Consensus 108 ~~G~GKTTt~~kLA~~l~~-~G~kVll 133 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYFQK-RGYKVGV 133 (443)
T ss_dssp CTTSSHHHHHHHHHHHHHT-TTCCEEE
T ss_pred cCCCCHHHHHHHHHHHHHH-CCCeEEE
Confidence 4699999999999999975 5887744
No 62
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=69.60 E-value=2.8 Score=36.84 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=25.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
|-|.||||.+--|++.|.. |.. +...|+|.-.|
T Consensus 34 ~~GsGKsT~~~~l~~~l~~--~~~-~~~~~~p~~~~ 66 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRLVK--DYD-VIMTREPGGVP 66 (229)
T ss_dssp CTTSCHHHHHHHHHHHHTT--TSC-EEEECTTTTCH
T ss_pred CCCCCHHHHHHHHHHHHhc--CCC-ceeecCCCCCc
Confidence 5799999999999999863 554 45679997554
No 63
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=69.22 E-value=1.9 Score=35.14 Aligned_cols=18 Identities=44% Similarity=0.538 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|+||||++.-|++.|+
T Consensus 12 ~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 12 FMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 679999999988887764
No 64
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=69.19 E-value=4 Score=34.92 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=24.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
+.|.||||++.-|+.+|. .|+++.+.=-.|.
T Consensus 22 kgGvGKTTl~~~La~~l~--~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 22 TAGSGKTTLTGEFGRYLE--DNYKVAYVNLDTG 52 (262)
T ss_dssp STTSSHHHHHHHHHHHHT--TTSCEEEEECCSS
T ss_pred CCCCCHHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 569999999999999996 5887765544553
No 65
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=69.07 E-value=3 Score=39.03 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=22.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
|-|+|||||+.-|+..+.. .|+++...
T Consensus 113 ~~G~GKTT~~~~LA~~l~~-~g~kVlli 139 (320)
T 1zu4_A 113 VNGTGKTTSLAKMANYYAE-LGYKVLIA 139 (320)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 5799999999999999974 57776554
No 66
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=69.06 E-value=1.8 Score=34.28 Aligned_cols=18 Identities=33% Similarity=0.191 Sum_probs=14.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++--|++.|+
T Consensus 9 ~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp SSSSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999888877664
No 67
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=69.03 E-value=1.8 Score=35.58 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=23.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCcc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTF 42 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~F 42 (353)
|-|+||||.+--|++.|. |.+ +..+++|.-++..
T Consensus 12 ~~GsGKsT~~~~L~~~l~---g~~-~~~~~~~~~~~~~ 45 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESIP---ANT-IKYLNFPQRSTVT 45 (204)
T ss_dssp CTTSSHHHHHHHHHHTSC---GGG-EEEEESSCTTSHH
T ss_pred CCCCCHHHHHHHHHHHHC---CCc-eEEEecCCCCCcH
Confidence 569999999988877551 333 4567898755433
No 68
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=68.54 E-value=2.9 Score=37.39 Aligned_cols=28 Identities=32% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 3 PTPLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 3 PTP~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
-|+-|-||||.++||+.-... .|+++..
T Consensus 34 ~tG~GkGKTTaA~GlalRA~g-~G~rV~~ 61 (196)
T 1g5t_A 34 FTGNGKGKTTAAFGTAARAVG-HGKNVGV 61 (196)
T ss_dssp EESSSSCHHHHHHHHHHHHHH-TTCCEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHH-CCCeEEE
Confidence 378899999999999877654 4888654
No 69
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=68.23 E-value=1.6 Score=37.12 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=22.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
|-|.||||+..-|.+-+........-..-|.|..|-
T Consensus 16 psGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e 51 (208)
T 3tau_A 16 PSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE 51 (208)
T ss_dssp CTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC
T ss_pred cCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc
Confidence 789999999888876553112233334556665543
No 70
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=68.02 E-value=1.5 Score=35.37 Aligned_cols=18 Identities=28% Similarity=0.206 Sum_probs=14.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|++.|+
T Consensus 11 ~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CTTSSHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 679999999988877653
No 71
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=68.00 E-value=1.9 Score=35.05 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|++.|+
T Consensus 13 ~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999988887763
No 72
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=67.54 E-value=2.3 Score=35.21 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=20.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
|-|.||||+..-|..-+........-..-|.|..|.
T Consensus 13 psGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge 48 (180)
T 1kgd_A 13 AHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE 48 (180)
T ss_dssp CTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C
T ss_pred CCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc
Confidence 789999999887766542112222334457777664
No 73
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=67.45 E-value=3.4 Score=37.08 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=25.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPT 41 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~ 41 (353)
|.|.||||..++++.-+.. -|+++. +=||+.+..
T Consensus 20 ~mGsGKTT~ll~~~~r~~~-~g~kVl--i~~~~~d~r 53 (223)
T 2b8t_A 20 PMFAGKTAELIRRLHRLEY-ADVKYL--VFKPKIDTR 53 (223)
T ss_dssp STTSCHHHHHHHHHHHHHH-TTCCEE--EEEECCCGG
T ss_pred CCCCcHHHHHHHHHHHHHh-cCCEEE--EEEeccCch
Confidence 5699999999999988854 477765 337887764
No 74
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=67.04 E-value=2.5 Score=34.03 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=16.3
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++.-|++.|+.
T Consensus 11 ~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CTTSCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 6799999999999888863
No 75
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=66.26 E-value=2.6 Score=33.83 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=18.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~ 28 (353)
|-|.||||.+--|++.|+. .|..
T Consensus 9 ~~GsGKsT~~~~L~~~l~~-~g~~ 31 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEILDN-QGIN 31 (194)
T ss_dssp CTTSCHHHHHHHHHHHHHT-TTCC
T ss_pred CCCCCHHHHHHHHHHHHHh-cCce
Confidence 5799999999999999874 3544
No 76
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=65.25 E-value=2.5 Score=36.49 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=22.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGP 40 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP 40 (353)
+-|.||||.+--|++.|. + +.++|||.-.+
T Consensus 10 ~~g~GKtt~~~~l~~~l~---~---~~~~~Ep~~~~ 39 (241)
T 2ocp_A 10 NIAVGKSTFVKLLTKTYP---E---WHVATEPVATW 39 (241)
T ss_dssp CTTSSHHHHHHHHHHHCT---T---SEEECCCGGGT
T ss_pred CCCCCHHHHHHHHHHHcC---C---Ceeeecchhhh
Confidence 469999999988887763 2 45689997665
No 77
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=65.08 E-value=2.2 Score=41.08 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=22.8
Q ss_pred CCCCCcchhH-HHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTT-IGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTtt-iGL~qal~~~lgk~~~~~lRqPS 37 (353)
+.|.||||++ -=|.+.|..+ |. ++..|||-
T Consensus 20 ~~GaGKTT~~~~~L~~~l~~~-g~--vv~trEPg 50 (341)
T 1osn_A 20 AYGIGKTTAAEEFLHHFAITP-NR--ILLIGEPL 50 (341)
T ss_dssp SSSSCTTHHHHHHHHTTTTSG-GG--EEEECCCH
T ss_pred CCCCCHHHHHHHHHHHHHhhC-Cc--EEEEeCCC
Confidence 5699999998 7777766532 42 89999993
No 78
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=64.53 E-value=4.8 Score=37.13 Aligned_cols=27 Identities=30% Similarity=0.112 Sum_probs=21.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
|-|+||||++.-|+..+.. .|+++...
T Consensus 106 ~~G~GKTT~~~~la~~~~~-~g~~v~l~ 132 (297)
T 1j8m_F 106 VQGTGKTTTAGKLAYFYKK-KGFKVGLV 132 (297)
T ss_dssp SSCSSTTHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 6799999999999999964 57766543
No 79
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=64.45 E-value=2.7 Score=33.58 Aligned_cols=18 Identities=39% Similarity=0.397 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+-|+||||++.-|++.|+
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 10 ARGCGMTTVGRELARALG 27 (173)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999988887764
No 80
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=64.07 E-value=3.9 Score=40.35 Aligned_cols=26 Identities=27% Similarity=0.129 Sum_probs=21.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
|-|+|||||+.-|+..|.. .|+++.+
T Consensus 105 ~~GsGKTTt~~kLA~~l~~-~G~kVll 130 (433)
T 3kl4_A 105 VQGSGKTTTAGKLAYFYKK-RGYKVGL 130 (433)
T ss_dssp CTTSCHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCeEEE
Confidence 5699999999999999975 5777643
No 81
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=63.72 E-value=2.8 Score=33.72 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=14.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+.|+||||++.-|++.|+
T Consensus 15 ~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 569999999888877664
No 82
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=63.54 E-value=2.3 Score=34.08 Aligned_cols=17 Identities=59% Similarity=0.771 Sum_probs=13.6
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||++.-|++.|
T Consensus 12 ~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999887776654
No 83
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=63.43 E-value=4.4 Score=37.80 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=20.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
|-|+|||||+.-|+..+.. -|+++..
T Consensus 112 ~~GsGKTTl~~~LA~~l~~-~g~kV~l 137 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFVD-EGKSVVL 137 (306)
T ss_dssp CTTSSHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CCCChHHHHHHHHHHHHHh-cCCEEEE
Confidence 5699999999999999964 4666644
No 84
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=62.66 E-value=1.8 Score=35.90 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|-|+||||.+--|.+.|.. .|.+ +..+|+|.
T Consensus 8 ~~GsGKsTl~~~L~~~l~~-~g~~-v~~~~~~~ 38 (214)
T 1gtv_A 8 VDGAGKRTLVEKLSGAFRA-AGRS-VATLAFPR 38 (214)
T ss_dssp EEEEEHHHHHHHHHHHHHE-EEEE-EEEEESSE
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCe-EEEEeecC
Confidence 4589999999999998863 3433 55788876
No 85
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=62.63 E-value=4.3 Score=39.72 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=21.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
|-|+||||++..|+..+.. .|+++..
T Consensus 107 ~~GvGKTTla~~La~~l~~-~G~kVll 132 (432)
T 2v3c_C 107 IQGSGKTTTAAKLARYIQK-RGLKPAL 132 (432)
T ss_dssp CSSSSTTHHHHHHHHHHHH-HHCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCeEEE
Confidence 4599999999999999975 4777643
No 86
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=62.55 E-value=4.7 Score=36.94 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=21.4
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
-|-|+||||++.-|+..+.. .|+++..
T Consensus 105 g~~G~GKTT~~~~la~~~~~-~~~~v~l 131 (295)
T 1ls1_A 105 GLQGSGKTTTAAKLALYYKG-KGRRPLL 131 (295)
T ss_dssp CCTTTTHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHH-cCCeEEE
Confidence 36799999999999999964 4666544
No 87
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=62.35 E-value=6.4 Score=33.69 Aligned_cols=32 Identities=25% Similarity=0.100 Sum_probs=24.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|.|.||||+.-.|.+.|.. .|.++-..-+.|.
T Consensus 14 ~sGsGKTTl~~~l~~~l~~-~g~~v~~i~~~~~ 45 (174)
T 1np6_A 14 WSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHH 45 (174)
T ss_dssp CTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC
T ss_pred CCCCCHHHHHHHHHHhccc-cCCceeEEeeCCC
Confidence 6799999999999999864 5777655556553
No 88
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=62.20 E-value=3.1 Score=33.86 Aligned_cols=18 Identities=50% Similarity=0.490 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+.|+||||++.-|++.|+
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 679999999988887764
No 89
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=62.11 E-value=4.2 Score=40.22 Aligned_cols=40 Identities=20% Similarity=0.079 Sum_probs=24.5
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCceeeE--eeCCCCCCcccc
Q psy7967 4 TPLGEGKSTTTIGLAQALAAHKHKNTFAC--VRQPSQGPTFGI 44 (353)
Q Consensus 4 TP~GEGKsTttiGL~qal~~~lgk~~~~~--lRqPS~GP~FGi 44 (353)
.+-|+||||++..|+.+|. ..|+++.+. =-++|+.-.||.
T Consensus 334 ~~~g~Gktt~a~~lA~~l~-~~g~~vllvD~Dp~~~l~~~l~~ 375 (589)
T 1ihu_A 334 GKGGVGKTTMAAAIAVRLA-DMGFDVHLTTSDPAAHLSMTLNG 375 (589)
T ss_dssp CSTTSSHHHHHHHHHHHHH-HTTCCEEEEESCCC---------
T ss_pred cCCCCChhhHHHHHHHHHH-HCCCcEEEEeCCCcccHhHHhcc
Confidence 4679999999999999997 469888653 123677777776
No 90
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=62.00 E-value=3.1 Score=33.71 Aligned_cols=18 Identities=50% Similarity=0.667 Sum_probs=14.9
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|++.|+
T Consensus 12 ~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQELG 29 (186)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999988887664
No 91
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=61.69 E-value=3.2 Score=33.60 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++--|++.|+
T Consensus 13 ~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 13 HPATGKTTLSQALATGLR 30 (193)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 569999999888877663
No 92
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=61.60 E-value=3.4 Score=34.60 Aligned_cols=23 Identities=43% Similarity=0.382 Sum_probs=18.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~ 28 (353)
|.|.||||+..-|++.|. .-|..
T Consensus 33 ~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 33 LSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp STTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCCCHHHHHHHHHHHHH-hcCce
Confidence 689999999999999886 33543
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=61.21 E-value=4.5 Score=32.96 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=18.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~ 28 (353)
|-|.||||++..++..+...-|..
T Consensus 46 ~~G~GKTtL~~~i~~~~~~~~g~~ 69 (180)
T 3ec2_A 46 SPGVGKTHLAVATLKAIYEKKGIR 69 (180)
T ss_dssp SSSSSHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCe
Confidence 779999999999988875333443
No 94
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=60.47 E-value=3.4 Score=34.58 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|++.|+
T Consensus 33 ~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 679999999988887763
No 95
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=60.14 E-value=3 Score=39.84 Aligned_cols=29 Identities=34% Similarity=0.386 Sum_probs=20.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
+-|.||||.+-=|++.|.+ .| +...|||.
T Consensus 12 ~dGsGKTT~~~~La~~L~~-~g---v~~trEPg 40 (331)
T 1e2k_A 12 PHGMGKTTTTQLLVALGSR-DD---IVYVPEPM 40 (331)
T ss_dssp CTTSSHHHHHHHHTC-----CC---EEEECCCH
T ss_pred CCCCCHHHHHHHHHHHhhh-CC---EEEEeCCC
Confidence 5699999999888887753 23 88999996
No 96
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=59.69 E-value=3.7 Score=40.17 Aligned_cols=29 Identities=34% Similarity=0.386 Sum_probs=21.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
+-|.||||.+-=|++.|.+ .| +...|||.
T Consensus 57 ~dGsGKTT~~~~Lae~L~~-~g---vv~trEPg 85 (376)
T 1of1_A 57 PHGMGKTTTTQLLVALGSR-DD---IVYVPEPM 85 (376)
T ss_dssp STTSSHHHHHHHHHC-----CC---EEEECCCH
T ss_pred CCCCCHHHHHHHHHHHhhh-CC---EEEEeCCC
Confidence 5699999999888888753 33 88999994
No 97
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=59.57 E-value=3.2 Score=34.88 Aligned_cols=17 Identities=47% Similarity=0.720 Sum_probs=14.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|.|.||||+...|+..+
T Consensus 41 ~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 41 DLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 78999999998887765
No 98
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=59.51 E-value=3.7 Score=33.66 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=14.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|+||||++.-|++.|+
T Consensus 10 ~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 10 PSASGKSSVARRVAAALG 27 (208)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 679999999888877653
No 99
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=59.50 E-value=3.4 Score=33.55 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=14.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|++.|+
T Consensus 17 ~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 569999999988887663
No 100
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=59.23 E-value=3.8 Score=33.39 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.9
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|++.|+
T Consensus 20 ~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999888877664
No 101
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=58.89 E-value=3.8 Score=34.07 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=14.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++--|++.++
T Consensus 26 ~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp STTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999888877763
No 102
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=58.77 E-value=3 Score=32.50 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=14.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|-|+||||++--| + .+|...+
T Consensus 9 ~~GsGKsT~a~~L-~----~~g~~~i 29 (179)
T 3lw7_A 9 MPGSGKSEFAKLL-K----ERGAKVI 29 (179)
T ss_dssp CTTSCHHHHHHHH-H----HTTCEEE
T ss_pred CCCCCHHHHHHHH-H----HCCCcEE
Confidence 6799999987766 3 4555543
No 103
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=58.31 E-value=4.4 Score=34.58 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=17.6
Q ss_pred CCCCCcchhHHHHH-HHHHhhcCCceeeEeeCCCCCCcc
Q psy7967 5 PLGEGKSTTTIGLA-QALAAHKHKNTFACVRQPSQGPTF 42 (353)
Q Consensus 5 P~GEGKsTttiGL~-qal~~~lgk~~~~~lRqPS~GP~F 42 (353)
|-|.||||+.--|+ ..+. ......-..-|.|..|-..
T Consensus 35 p~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~g~~~ 72 (231)
T 3lnc_A 35 PSGCGKTTVANKLLEKQKN-NIVKSVSVTTRAARKGEKE 72 (231)
T ss_dssp SCC----CHHHHHHC-----CEEECCCEESSCCCTTCCB
T ss_pred CCCCCHHHHHHHHHhcCCC-CcccccccCCCCCCccccC
Confidence 78999999998887 5443 2222223445677666543
No 104
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=58.07 E-value=3.7 Score=33.37 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=20.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
+-|.||||++.-|++.|+ . ..+.+|..|
T Consensus 8 ~~GsGKsT~~~~L~~~l~----~---~~~~e~~~~ 35 (205)
T 2jaq_A 8 TVGAGKSTISAEISKKLG----Y---EIFKEPVEE 35 (205)
T ss_dssp CTTSCHHHHHHHHHHHHC----C---EEECCCGGG
T ss_pred CCccCHHHHHHHHHHhcC----C---cEEcccccc
Confidence 569999999888877664 2 346777543
No 105
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=57.85 E-value=3.8 Score=32.94 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+-|+||||++--|++.++
T Consensus 11 ~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999988877663
No 106
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=57.74 E-value=4.1 Score=32.42 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=14.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+-|+||||++.-|++.|+
T Consensus 8 ~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 569999999888877663
No 107
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=57.71 E-value=3.9 Score=32.84 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=14.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++.-|++.|+
T Consensus 14 ~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 569999999888877653
No 108
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=56.72 E-value=5.4 Score=35.23 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=24.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPT 41 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~ 41 (353)
|-|.||||+..-|.+-+...+....-.+-|.|..|-.
T Consensus 27 PSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~ 63 (197)
T 3ney_A 27 ASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEE 63 (197)
T ss_dssp CTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCC
T ss_pred cCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCee
Confidence 7899999988877765431233334456788887763
No 109
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=56.37 E-value=4.6 Score=36.92 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=14.1
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|.|+||||++--|.+.|+.
T Consensus 13 ~sGSGKSTva~~L~~~lg~ 31 (290)
T 1a7j_A 13 SSGAGTSTVKHTFDQIFRR 31 (290)
T ss_dssp CC---CCTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 7899999999999998874
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=56.35 E-value=7 Score=34.00 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=22.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFG 43 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FG 43 (353)
|.|.||||..++++.-+. ..|+++.+ =+|+...-+|
T Consensus 16 ~mgsGKTT~ll~~a~r~~-~~g~kV~v--~k~~~d~r~~ 51 (191)
T 1xx6_A 16 PMYSGKSEELIRRIRRAK-IAKQKIQV--FKPEIDNRYS 51 (191)
T ss_dssp STTSSHHHHHHHHHHHHH-HTTCCEEE--EEEC------
T ss_pred CCCCcHHHHHHHHHHHHH-HCCCEEEE--EEeccCccch
Confidence 569999999999988774 34666543 3577655443
No 111
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=56.22 E-value=3.6 Score=36.28 Aligned_cols=18 Identities=44% Similarity=0.636 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|+||||++.-|++.|+
T Consensus 35 ~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 35 PSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 789999999988877664
No 112
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=56.12 E-value=6.9 Score=37.53 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=21.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
|+|.||||+..-+.+.|.. .|++.++.
T Consensus 53 ~aGTGKT~ll~~~~~~l~~-~~~~~il~ 79 (459)
T 3upu_A 53 PAGTGATTLTKFIIEALIS-TGETGIIL 79 (459)
T ss_dssp CTTSCHHHHHHHHHHHHHH-TTCCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCceEEE
Confidence 6899999999999999975 46633433
No 113
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=55.23 E-value=4.3 Score=36.00 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=14.9
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++.-|++.++
T Consensus 9 ~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHhcCC
Confidence 679999999888877664
No 114
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=55.16 E-value=6.9 Score=38.48 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
|-|+||||++.-|+..+.. .|+++.+
T Consensus 106 ~~GsGKTT~~~~LA~~l~~-~g~~Vll 131 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYYKG-KGRRPLL 131 (425)
T ss_dssp CTTSSHHHHHHHHHHHHHT-TTCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCeEEE
Confidence 6799999999999999975 4666543
No 115
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=55.05 E-value=3.6 Score=33.13 Aligned_cols=18 Identities=39% Similarity=0.624 Sum_probs=10.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+-|+||||++.-|++.|+
T Consensus 13 ~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CC----CHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 569999999877766553
No 116
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=53.88 E-value=7.1 Score=39.32 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=19.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
|.|.|||||...+...|.+.-+++..+
T Consensus 203 ppGTGKT~~~~~~i~~l~~~~~~~ilv 229 (624)
T 2gk6_A 203 PPGTGKTVTSATIVYHLARQGNGPVLV 229 (624)
T ss_dssp CTTSCHHHHHHHHHHHHHTSSSCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 789999999999988875423444433
No 117
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=53.77 E-value=4.9 Score=32.90 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=19.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQ 38 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~ 38 (353)
|-|+||||++--|++-+....+...-...|+|..
T Consensus 14 ~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~ 47 (207)
T 2j41_A 14 PSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMRE 47 (207)
T ss_dssp STTSCHHHHHHHHHHCTTCCEECCCCEECSCCCT
T ss_pred CCCCCHHHHHHHHHHhhCCCeEEecccccCCCCC
Confidence 6799999998777654411122122234566653
No 118
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=53.35 E-value=5.4 Score=32.15 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=13.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||++--|++.+
T Consensus 16 ~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQL 32 (175)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 67999999987776654
No 119
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=53.13 E-value=4.4 Score=35.36 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.0
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|.|+||||++--|++.|+.
T Consensus 30 ~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp STTSSHHHHHHHHHHHTTG
T ss_pred CCCCCHHHHHHHHHHHhhh
Confidence 6799999999888887753
No 120
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=53.02 E-value=7.7 Score=34.22 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=20.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
+-|+||||++.-|++.|. .+|...+
T Consensus 12 ~pGSGKSTla~~La~~L~-~~g~~~i 36 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKILS-KNNIDVI 36 (260)
T ss_dssp CTTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCCCHHHHHHHHHHHHH-hCCCEEE
Confidence 469999999999999986 4676655
No 121
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=52.89 E-value=4.5 Score=38.70 Aligned_cols=30 Identities=30% Similarity=0.252 Sum_probs=23.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
+-|.||||.+--|++.|.. +. .+...|||.
T Consensus 15 ~dGaGKTT~~~~La~~L~~--~~-~v~~trEPg 44 (334)
T 1p6x_A 15 VYGIGKSTTGRVMASAASG--GS-PTLYFPEPM 44 (334)
T ss_dssp STTSSHHHHHHHHHSGGGC--SS-CEEEECCCH
T ss_pred CCCCCHHHHHHHHHHHhcc--CC-cEEEEeCCC
Confidence 5799999999888877753 22 288899994
No 122
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=52.88 E-value=6 Score=30.86 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=16.6
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|.|.||||++..+++.+..
T Consensus 51 ~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 51 EPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 6799999999999998853
No 123
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=52.83 E-value=5.2 Score=32.52 Aligned_cols=18 Identities=33% Similarity=0.290 Sum_probs=14.6
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|++.|+
T Consensus 19 ~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 19 TPGVGKTTLGKELASKSG 36 (180)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999888877663
No 124
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=52.55 E-value=5.5 Score=33.27 Aligned_cols=17 Identities=47% Similarity=0.681 Sum_probs=13.8
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||++--|++-+
T Consensus 13 ~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999887776654
No 125
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=52.38 E-value=9.6 Score=31.24 Aligned_cols=19 Identities=21% Similarity=0.136 Sum_probs=16.1
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||+...++..+..
T Consensus 44 ~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 44 EEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SSTTTTCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 6799999999998887753
No 126
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=51.96 E-value=5.4 Score=33.30 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=14.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|++.++
T Consensus 8 ~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999888877653
No 127
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=51.68 E-value=8.7 Score=38.58 Aligned_cols=25 Identities=36% Similarity=0.260 Sum_probs=20.6
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
-|+||||++.-|+..|.. .|+++.+
T Consensus 110 ~GvGKTTl~~kLA~~l~~-~G~kVll 134 (504)
T 2j37_W 110 QGSGKTTTCSKLAYYYQR-KGWKTCL 134 (504)
T ss_dssp TTSSHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CCCCHHHHHHHHHHHHHh-CCCeEEE
Confidence 499999999999999975 4777643
No 128
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=51.65 E-value=6.3 Score=32.74 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=14.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|+.-++
T Consensus 14 ~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 14 GTASGKTTLAQALARTLG 31 (211)
T ss_dssp STTSSHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999887766653
No 129
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=51.18 E-value=8.8 Score=38.71 Aligned_cols=27 Identities=33% Similarity=0.306 Sum_probs=21.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
|.|.|||||...|...+.. .|++..++
T Consensus 212 ~pGTGKTt~i~~l~~~l~~-~g~~Vl~~ 238 (574)
T 3e1s_A 212 GPGTGKSTTTKAVADLAES-LGLEVGLC 238 (574)
T ss_dssp CTTSCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCeEEEe
Confidence 6899999999999999964 57666544
No 130
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=51.04 E-value=10 Score=31.06 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=19.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
+-|.||||++.-|++.|.. .|.++
T Consensus 21 ~~GsGKsT~~~~L~~~l~~-~~~~~ 44 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLLQK-EGYRV 44 (186)
T ss_dssp CTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCeE
Confidence 4699999999999999874 35543
No 131
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=50.95 E-value=6.1 Score=32.76 Aligned_cols=18 Identities=44% Similarity=0.730 Sum_probs=14.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|++.|+
T Consensus 28 ~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 569999999888877663
No 132
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=50.67 E-value=11 Score=35.79 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=25.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQ 38 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~ 38 (353)
|-|+||||+.--|..-+.. -....+.++.+|.-
T Consensus 131 ptGSGKTTlL~~l~g~~~~-~~~~~i~t~ed~~e 163 (356)
T 3jvv_A 131 PTGSGKSTTLAAMLDYLNN-TKYHHILTIEDPIE 163 (356)
T ss_dssp STTSCHHHHHHHHHHHHHH-HCCCEEEEEESSCC
T ss_pred CCCCCHHHHHHHHHhcccC-CCCcEEEEccCcHH
Confidence 7799999999999888864 33455777888754
No 133
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=50.64 E-value=11 Score=34.21 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=22.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFG 43 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FG 43 (353)
|.|.||||..++++.-.. .-|+++++ =+|+....+|
T Consensus 36 ~MgsGKTT~lL~~a~r~~-~~g~kVli--~k~~~d~R~g 71 (214)
T 2j9r_A 36 SMFSGKSEELIRRVRRTQ-FAKQHAIV--FKPCIDNRYS 71 (214)
T ss_dssp STTSCHHHHHHHHHHHHH-HTTCCEEE--EECC------
T ss_pred CCCCcHHHHHHHHHHHHH-HCCCEEEE--EEeccCCcch
Confidence 569999999999988774 34776654 3688876665
No 134
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=50.47 E-value=13 Score=29.59 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=16.5
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|.|.||||++.-+++.+..
T Consensus 46 ~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 46 PPGTGKTATAIALARDLFG 64 (226)
T ss_dssp STTSSHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 6799999999999988854
No 135
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=50.42 E-value=9.7 Score=30.94 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=18.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
+-|+||||++--|++.|.. .|...
T Consensus 13 ~~GsGKST~~~~L~~~l~~-~g~~~ 36 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYLVC-HGIPC 36 (179)
T ss_dssp CTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCCCCHHHHHHHHHHHHhh-CCCcE
Confidence 5799999999888887743 35443
No 136
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=50.41 E-value=5.8 Score=33.51 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=15.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||.+--|++.|+
T Consensus 13 ~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 13 APASGKGTQCELIKTKYQ 30 (222)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999988888774
No 137
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=49.97 E-value=7.9 Score=32.63 Aligned_cols=18 Identities=50% Similarity=0.534 Sum_probs=15.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|+..+.
T Consensus 30 ~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 30 APGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CTTSCTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 679999999988877775
No 138
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=49.44 E-value=7 Score=32.66 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=14.2
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||++--|++.+
T Consensus 37 ~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 37 VSGSGKTTIAHGVADET 53 (200)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 67999999998887665
No 139
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=49.38 E-value=6.4 Score=31.28 Aligned_cols=15 Identities=33% Similarity=0.242 Sum_probs=12.8
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
|-|+||||++.-|++
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 679999999877776
No 140
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=49.30 E-value=10 Score=32.10 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=22.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFG 43 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FG 43 (353)
|-|.||||..++++.-+.. .|++++ +=+|+...-+|
T Consensus 11 ~~gsGKTT~ll~~~~~~~~-~g~~v~--~~~~~~d~r~~ 46 (184)
T 2orw_A 11 PMYSGKTTELLSFVEIYKL-GKKKVA--VFKPKIDSRYH 46 (184)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCEEE--EEEEC-----C
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCeEE--EEeeccccccC
Confidence 5699999999999877643 466654 33566555443
No 141
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=49.07 E-value=7.8 Score=31.86 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=17.1
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|.|.||||++..+++.+..
T Consensus 60 ~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 60 PVKSGRTHLIHAACARANE 78 (242)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 6799999999999999864
No 142
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=48.98 E-value=5.5 Score=31.30 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=16.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++..+++.+.
T Consensus 51 ~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 51 DPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CGGGCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 679999999999999885
No 143
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=48.52 E-value=10 Score=38.09 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=21.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
|-|.|||||.+-+...|-+ .|++..+|
T Consensus 213 PPGTGKT~ti~~~I~~l~~-~~~~ILv~ 239 (646)
T 4b3f_X 213 PPGTGKTTTVVEIILQAVK-QGLKVLCC 239 (646)
T ss_dssp CTTSCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 7899999999998877754 46665554
No 144
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=48.32 E-value=5.2 Score=33.03 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=13.9
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||++--|++.+
T Consensus 23 ~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999988887654
No 145
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=47.36 E-value=14 Score=30.21 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=17.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|-|.||||+..-|+..+.. -+.++
T Consensus 31 ~~GsGKTtl~~~l~~~~~~-~~~~v 54 (235)
T 2w0m_A 31 EPGTGKTIFSLHFIAKGLR-DGDPC 54 (235)
T ss_dssp STTSSHHHHHHHHHHHHHH-HTCCE
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCeE
Confidence 6799999999999876643 34444
No 146
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=47.05 E-value=11 Score=30.95 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.6
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++..+++.+..
T Consensus 62 ~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 62 SFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp STTSSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 6799999999999988853
No 147
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=46.85 E-value=14 Score=31.16 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=18.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~ 28 (353)
+-|.||||++--|++.|....|.+
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~~g~~ 56 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQLVRDRRVH 56 (211)
T ss_dssp STTSSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCHHHHHHHHHHHhccccCCc
Confidence 579999999999999886223544
No 148
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=46.74 E-value=7.7 Score=33.65 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.9
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|+..++
T Consensus 33 ~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 33 GTASGKSTVCEKIMELLG 50 (245)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 789999999987776664
No 149
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=46.36 E-value=7.2 Score=33.65 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=15.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||+.--|++.++
T Consensus 35 ~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999988887774
No 150
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=46.29 E-value=7.3 Score=32.84 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=14.7
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||.+.-|++.|+
T Consensus 12 ~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 569999999888877663
No 151
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=46.02 E-value=6.6 Score=41.45 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=27.8
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhc----CCceeeEeeCCCCCCcc
Q psy7967 1 ITPTPLGEGKSTTTIGLAQALAAHK----HKNTFACVRQPSQGPTF 42 (353)
Q Consensus 1 itPTP~GEGKsTttiGL~qal~~~l----gk~~~~~lRqPS~GP~F 42 (353)
|+-|--|.||||+|.||+++|.++- |.+ ++-.+-=++||-.
T Consensus 39 I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~-V~~fKPv~~g~~~ 83 (831)
T 4a0g_A 39 IWSANTSLGKTLVSTGIAASFLLQQPSSSATK-LLYLKPIQTGFPS 83 (831)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHSCSSCCTTCE-EEEEEEEECSTTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcccccCCce-EEEEcccccCCCc
Confidence 3457889999999999999997431 444 4445533445543
No 152
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=45.98 E-value=6 Score=33.11 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||++--|++.+
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999987777654
No 153
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=45.83 E-value=15 Score=34.18 Aligned_cols=32 Identities=28% Similarity=0.273 Sum_probs=24.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
+.|.||||++.-|+.+|.. .|+++.+.==.|+
T Consensus 87 ~~G~GKSTl~~~L~~~l~~-~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 87 VPGVGKSTAIEALGMHLIE-RGHRVAVLAVDPS 118 (355)
T ss_dssp CTTSSHHHHHHHHHHHHHT-TTCCEEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHHh-CCCceEEEecCCC
Confidence 4699999999999999964 5888765555554
No 154
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=45.65 E-value=15 Score=30.65 Aligned_cols=25 Identities=12% Similarity=-0.012 Sum_probs=18.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|-|.||||++.-++..+.. .|.+++
T Consensus 31 ~~GsGKTtl~~~~~~~~~~-~~~~v~ 55 (247)
T 2dr3_A 31 GPGTGKTIFSQQFLWNGLK-MGEPGI 55 (247)
T ss_dssp CTTSSHHHHHHHHHHHHHH-TTCCEE
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCeEE
Confidence 6799999999888776643 354443
No 155
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=45.61 E-value=6.4 Score=32.51 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=12.5
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
|-|+||||++--|++
T Consensus 9 ~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE 23 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 679999998877766
No 156
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=45.27 E-value=8.1 Score=34.87 Aligned_cols=18 Identities=56% Similarity=0.868 Sum_probs=15.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-|++.|+
T Consensus 17 ~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 17 PAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999888877664
No 157
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=44.98 E-value=8.5 Score=33.04 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||.+.-|++.|+
T Consensus 24 ~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 569999999988887764
No 158
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=44.51 E-value=6.8 Score=31.82 Aligned_cols=15 Identities=47% Similarity=0.508 Sum_probs=11.6
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
|-|.||||+..-|+.
T Consensus 17 ~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 17 HPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHh
Confidence 679999998766543
No 159
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=44.35 E-value=14 Score=34.31 Aligned_cols=18 Identities=44% Similarity=0.399 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|+..+.
T Consensus 98 ~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 98 SVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhhcc
Confidence 679999999988877764
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=43.87 E-value=8.5 Score=31.48 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=12.8
Q ss_pred CCCCCcchhHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQA 20 (353)
Q Consensus 5 P~GEGKsTttiGL~qa 20 (353)
|-|.||||+.--|+.-
T Consensus 15 p~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 15 PSGAGKTSLVRALVKA 30 (205)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhh
Confidence 7799999988776544
No 161
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=43.81 E-value=8.5 Score=32.38 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=14.2
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||.+--|++.+
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKY 24 (214)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 56999999988887766
No 162
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=43.75 E-value=14 Score=30.91 Aligned_cols=19 Identities=32% Similarity=0.281 Sum_probs=16.3
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|+||||++--|...|..
T Consensus 30 ~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 30 LSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 6799999999999888853
No 163
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=43.62 E-value=6.7 Score=33.34 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=13.9
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||.+--|++.|
T Consensus 15 ~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHF 31 (227)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 67999999887777655
No 164
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=43.20 E-value=7.1 Score=35.52 Aligned_cols=31 Identities=26% Similarity=0.216 Sum_probs=23.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQ 35 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRq 35 (353)
|-|.||||+++-|++.....+.-.++..-|+
T Consensus 42 psGsGKStLA~~La~~g~~iIsdDs~~v~~~ 72 (205)
T 2qmh_A 42 DSGVGKSETALELVQRGHRLIADDRVDVYQQ 72 (205)
T ss_dssp CCTTTTHHHHHHHHTTTCEEEESSEEEEEEC
T ss_pred CCCCCHHHHHHHHHHhCCeEEecchhheeec
Confidence 7799999999999887765555555555554
No 165
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=43.04 E-value=13 Score=39.10 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=19.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|.|.|||||...+...|-+.-+++..
T Consensus 379 ppGTGKT~ti~~~i~~l~~~~~~~il 404 (800)
T 2wjy_A 379 PPGTGKTVTSATIVYHLARQGNGPVL 404 (800)
T ss_dssp CTTSCHHHHHHHHHHHHHTTCSSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence 78999999999998888543344433
No 166
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=42.49 E-value=8.3 Score=31.87 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.5
Q ss_pred CCCCCcchhHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQA 20 (353)
Q Consensus 5 P~GEGKsTttiGL~qa 20 (353)
|-|.||||++--|++.
T Consensus 18 ~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAE 33 (184)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5699999998888776
No 167
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=42.20 E-value=9.8 Score=32.58 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=19.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEe----eCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACV----RQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~l----RqP 36 (353)
|-|+||||.+--|++.|+ .. ++.. |+|
T Consensus 8 ~~GsGKsT~a~~La~~lg----~~-~i~~dd~~r~~ 38 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKYS----LA-HIESGGIFREH 38 (223)
T ss_dssp CTTSCHHHHHHHHHHHHT----CE-EEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC----Ce-EEchHHHHHHH
Confidence 679999999888877663 33 4444 886
No 168
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=42.07 E-value=7.8 Score=32.14 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=12.1
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
|-|+||||++--|++
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 679999998876654
No 169
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=41.70 E-value=9.5 Score=32.35 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||.+.-|++.|+
T Consensus 13 ~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 569999999888777663
No 170
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=41.32 E-value=10 Score=31.02 Aligned_cols=15 Identities=60% Similarity=0.682 Sum_probs=12.8
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
|-|.||||+..-|++
T Consensus 10 ~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAA 24 (189)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhc
Confidence 679999999888865
No 171
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=40.77 E-value=13 Score=29.90 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=15.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-+++.+.
T Consensus 53 ~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 53 TRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp STTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 679999999988887775
No 172
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=40.66 E-value=10 Score=30.84 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=12.0
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
|.|+||||++--|++
T Consensus 16 ~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 16 NIGSGKSTVAALLRS 30 (203)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999998866654
No 173
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=40.28 E-value=9.2 Score=32.91 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|+||||++.-|++.|+
T Consensus 14 ~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 14 EFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999988887764
No 174
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=40.18 E-value=8.9 Score=36.82 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.9
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++.-|++.|+
T Consensus 15 ptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 15 PTASGKTELSIEVAKKFN 32 (340)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHHHHcC
Confidence 679999999999988874
No 175
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=39.18 E-value=11 Score=32.47 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=13.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
+-|+||||++--|++.|
T Consensus 20 ~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 20 KIGTGKSTVCEILKNKY 36 (192)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 57999999988777654
No 176
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=38.85 E-value=25 Score=32.53 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=24.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQ 38 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~ 38 (353)
|-|+||||+..-|+..+.. .|+++.+.=..|+.
T Consensus 64 ~~g~GKSTl~~~l~~~~~~-~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 64 TPGAGKSTFLEAFGMLLIR-EGLKVAVIAVDPSS 96 (341)
T ss_dssp CTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC-
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCeEEEEeecCCc
Confidence 6799999999999998864 57776665566643
No 177
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=38.47 E-value=18 Score=38.12 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=20.1
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeE
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFAC 32 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~ 32 (353)
|.|.|||||.+.+...|-+.-+++..+|
T Consensus 383 ppGTGKT~~i~~~i~~l~~~~~~~ILv~ 410 (802)
T 2xzl_A 383 PPGTGKTVTSATIVYHLSKIHKDRILVC 410 (802)
T ss_dssp STTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 7899999999998877754334444433
No 178
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=37.93 E-value=9.8 Score=31.91 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=11.8
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
+.|+||||++--|++
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999998766654
No 179
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=37.71 E-value=13 Score=33.65 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|++.|+
T Consensus 56 ~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp STTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 679999999888887764
No 180
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=37.14 E-value=11 Score=31.42 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=13.9
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|.|+||||++.-|++.|
T Consensus 11 ~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 11 PAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 67999999988777654
No 181
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=36.91 E-value=9.3 Score=31.46 Aligned_cols=12 Identities=42% Similarity=0.412 Sum_probs=10.1
Q ss_pred CCCCCcchhHHH
Q psy7967 5 PLGEGKSTTTIG 16 (353)
Q Consensus 5 P~GEGKsTttiG 16 (353)
|-|+||||+.--
T Consensus 17 ~nGsGKSTl~~~ 28 (171)
T 4gp7_A 17 SSGSGKSTFAKK 28 (171)
T ss_dssp CTTSCHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 679999998764
No 182
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=36.80 E-value=23 Score=32.43 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=18.9
Q ss_pred CCCCCcchhHHHHHHHHH-hhcCCc
Q psy7967 5 PLGEGKSTTTIGLAQALA-AHKHKN 28 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~-~~lgk~ 28 (353)
|.|.|||+++..+++.+. . .|++
T Consensus 160 ~~GtGKT~La~aia~~~~~~-~g~~ 183 (308)
T 2qgz_A 160 DMGIGKSYLLAAMAHELSEK-KGVS 183 (308)
T ss_dssp STTSSHHHHHHHHHHHHHHH-SCCC
T ss_pred CCCCCHHHHHHHHHHHHHHh-cCCc
Confidence 789999999999999986 4 3544
No 183
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=36.65 E-value=15 Score=31.87 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=25.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPT 41 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~ 41 (353)
|.|.||||+.--|.+-+-..+....-.+=|.|--|-+
T Consensus 9 PSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~ 45 (186)
T 1ex7_A 9 PSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp CTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc
Confidence 8899999998777665533344455567788776654
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=36.24 E-value=16 Score=32.04 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=17.1
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++..+++.+..
T Consensus 75 ~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 75 NPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 6799999999999999964
No 185
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=35.52 E-value=9.7 Score=36.68 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=16.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||+++-|++.++
T Consensus 11 ptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 11 PTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CTTSCHHHHHHHHHHTTT
T ss_pred CCcCCHHHHHHHHHHhCc
Confidence 779999999999998774
No 186
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=35.45 E-value=21 Score=33.71 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=14.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||++--|..-+.
T Consensus 100 psGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 100 SVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 679999999987766553
No 187
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=34.37 E-value=15 Score=33.37 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=14.3
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||++--|.+.+
T Consensus 41 ~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CTTSCTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999998887655
No 188
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=34.30 E-value=16 Score=30.99 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=20.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
|-|.||||++..+++.++ .. +..+.-+++-
T Consensus 47 ~~GtGKT~la~~la~~~~----~~-~~~~~~~~~~ 76 (262)
T 2qz4_A 47 PPGCGKTLLAKAVATEAQ----VP-FLAMAGAEFV 76 (262)
T ss_dssp CTTSSHHHHHHHHHHHHT----CC-EEEEETTTTS
T ss_pred CCCCCHHHHHHHHHHHhC----CC-EEEechHHHH
Confidence 679999999988877653 32 4445544443
No 189
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=34.26 E-value=11 Score=33.07 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=13.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||++.-|++.+
T Consensus 40 ~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CGGGTTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 57999999887776655
No 190
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=33.92 E-value=15 Score=32.13 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.2
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||.+-=|++.+
T Consensus 37 ~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999988887765
No 191
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=33.87 E-value=30 Score=28.84 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=12.9
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
|-|.||||+..-|+.
T Consensus 38 pnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 38 GTGTGKTTFAAQFIY 52 (251)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 789999999987763
No 192
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=33.65 E-value=16 Score=31.43 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=13.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|.|+||||++--|++-|
T Consensus 24 ~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 24 PASSGKSTVAKIIAKDF 40 (236)
T ss_dssp SSCSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 67999999887776655
No 193
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=33.47 E-value=16 Score=32.38 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
+.|+||||++--|++.|+
T Consensus 22 ~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 22 EYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 589999999999988875
No 194
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=33.22 E-value=8.4 Score=37.15 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||+++-|++.|+
T Consensus 48 PTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp STTSSHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHCC
Confidence 679999999999988774
No 195
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.66 E-value=18 Score=32.72 Aligned_cols=18 Identities=39% Similarity=0.715 Sum_probs=16.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-+++.+.
T Consensus 54 p~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 54 PPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SSSSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 789999999999999885
No 196
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=32.33 E-value=12 Score=35.56 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|++.++
T Consensus 13 ptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 13 PTAAGKTDLAMALADALP 30 (323)
T ss_dssp CTTSCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 679999999988887764
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=32.23 E-value=14 Score=30.69 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=12.0
Q ss_pred CCCCCcchhHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQA 20 (353)
Q Consensus 5 P~GEGKsTttiGL~qa 20 (353)
|-|+||||++--|++.
T Consensus 29 ~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 29 VTNSGKTTLAKNLQKH 44 (207)
T ss_dssp STTSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5699999987666543
No 198
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=32.08 E-value=26 Score=28.86 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=16.0
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
+.|.||||+..-|+..+..
T Consensus 38 ~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 38 AIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp CTTSCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 4699999999999888753
No 199
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=32.06 E-value=17 Score=36.05 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=16.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||+++-|++.++
T Consensus 10 ptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 10 TTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CSSSSHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHCC
Confidence 779999999999999885
No 200
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=32.04 E-value=19 Score=32.96 Aligned_cols=19 Identities=42% Similarity=0.587 Sum_probs=16.4
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|+||||++--|.+.|..
T Consensus 39 ~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 39 PQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhh
Confidence 6799999999989888864
No 201
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=32.03 E-value=19 Score=31.43 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=16.3
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-|++.+.
T Consensus 55 ~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 55 PTGVGKTELAKTLAATLF 72 (311)
T ss_dssp CSSSSHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc
Confidence 679999999999999885
No 202
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=31.67 E-value=13 Score=35.72 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=15.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||+++-|++.++
T Consensus 18 ptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 18 PTASGKTALAIELRKILP 35 (316)
T ss_dssp CTTSCHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHhCC
Confidence 779999999999988764
No 203
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=31.29 E-value=19 Score=31.33 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||++..+++.+
T Consensus 72 ~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 72 PPHSGKTALAAKIAEES 88 (272)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 67999999998888775
No 204
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=31.20 E-value=27 Score=31.12 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=16.5
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++..+++.+..
T Consensus 45 ~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 45 SVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SSSSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 6799999999999988853
No 205
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=31.10 E-value=20 Score=30.95 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=15.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-+++.++
T Consensus 58 ~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 58 PTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999998888773
No 206
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=30.95 E-value=28 Score=35.11 Aligned_cols=19 Identities=42% Similarity=0.440 Sum_probs=16.8
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|.|.|||||...+...|..
T Consensus 172 ~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 172 GPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp CTTSTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 6899999999999998863
No 207
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=30.92 E-value=30 Score=32.45 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=18.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
|-|.||||+.-=|+--+.. .+.+..
T Consensus 137 ~nGaGKTTll~~Lag~l~~-~~g~V~ 161 (328)
T 3e70_C 137 FNGSGKTTTIAKLANWLKN-HGFSVV 161 (328)
T ss_dssp CTTSSHHHHHHHHHHHHHH-TTCCEE
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCEEE
Confidence 6799999999988877754 344443
No 208
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=30.92 E-value=18 Score=32.47 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.9
Q ss_pred CCCCCcchhHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQA 20 (353)
Q Consensus 5 P~GEGKsTttiGL~qa 20 (353)
|.|.||||++..|.+.
T Consensus 24 ~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 24 EANIGKSELSLALIDR 39 (181)
T ss_dssp SSSSSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHc
Confidence 6799999999998763
No 209
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=30.65 E-value=18 Score=29.87 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=12.9
Q ss_pred CCCCCcchhHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQA 20 (353)
Q Consensus 5 P~GEGKsTttiGL~qa 20 (353)
|-|.||||+..-|+-.
T Consensus 33 ~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 33 EFGSGKTQLAHTLAVM 48 (231)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 7899999998777543
No 210
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=30.50 E-value=20 Score=30.79 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++..|++.++
T Consensus 52 ~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 52 PPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SSCSSHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 779999999988877653
No 211
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=30.33 E-value=21 Score=32.05 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=15.8
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++..+++.+.
T Consensus 78 ppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 78 QPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 679999999999988874
No 212
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=30.29 E-value=19 Score=36.38 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.6
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
+.|+||||++.-|++.|+.
T Consensus 403 lsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TCCSCHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 4699999999999999863
No 213
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=29.94 E-value=16 Score=33.36 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=15.6
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|.|.||||++..|++.+
T Consensus 66 PPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 66 PANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CGGGCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998887
No 214
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=29.89 E-value=18 Score=32.56 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.|||+++..+++.++
T Consensus 44 ppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 44 GKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999998888877764
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=29.71 E-value=22 Score=30.55 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.3
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||++..|+..+
T Consensus 53 ~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 53 PPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc
Confidence 67999999998887765
No 216
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.69 E-value=23 Score=31.28 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=16.4
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-+++.+.
T Consensus 66 ~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 66 PPGTGKTSTILALTKELY 83 (353)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999999999885
No 217
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=29.05 E-value=34 Score=30.01 Aligned_cols=18 Identities=44% Similarity=0.621 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-++..+.
T Consensus 38 ~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 38 PGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 679999999998887663
No 218
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=29.00 E-value=9.6 Score=33.32 Aligned_cols=17 Identities=35% Similarity=0.217 Sum_probs=13.5
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
+-|.||||.+--|++.|
T Consensus 32 ~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 32 NIAAGKSTFVNILKQLC 48 (263)
T ss_dssp STTSSHHHHHTTTGGGC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 56999999987776655
No 219
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=28.76 E-value=31 Score=31.84 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=18.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|-|.||||+..-|+--+.. -+.+.
T Consensus 110 ~nGsGKTTll~~Lagll~~-~~g~V 133 (304)
T 1rj9_A 110 VNGVGKTTTIAKLGRYYQN-LGKKV 133 (304)
T ss_dssp STTSSHHHHHHHHHHHHHT-TTCCE
T ss_pred CCCCcHHHHHHHHHHHHHh-cCCEE
Confidence 6799999999988877754 34443
No 220
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=28.28 E-value=32 Score=31.71 Aligned_cols=19 Identities=37% Similarity=0.347 Sum_probs=15.8
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||+..-|+--+..
T Consensus 108 ~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 108 VNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 6799999999988877754
No 221
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=28.22 E-value=19 Score=31.17 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=13.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||++..+++.+
T Consensus 59 ~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 59 PPGTGKTLLAKAVATET 75 (285)
T ss_dssp SSSSSHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 67999999887776654
No 222
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=28.21 E-value=26 Score=30.45 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=16.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-+++.+.
T Consensus 54 ~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 54 PPGVGKTTAALALARELF 71 (327)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 679999999999999885
No 223
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=27.85 E-value=21 Score=30.66 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=13.6
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||+...|+..+
T Consensus 57 ~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 57 PPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 77999999987776544
No 224
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=27.84 E-value=25 Score=31.61 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|+||||+.--|..-+.
T Consensus 33 p~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 33 PTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp STTCSHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhCC
Confidence 679999999988877664
No 225
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=27.75 E-value=24 Score=32.03 Aligned_cols=17 Identities=41% Similarity=0.376 Sum_probs=13.8
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|+||||++--|..-+
T Consensus 88 ~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 88 SVAVGKSTTARVLQALL 104 (308)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 67999999988776555
No 226
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=27.55 E-value=25 Score=32.12 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=15.0
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.-++..++
T Consensus 59 p~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 59 PPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 779999999888877664
No 227
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=27.46 E-value=22 Score=29.90 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=12.5
Q ss_pred CCCCCcchhHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQA 20 (353)
Q Consensus 5 P~GEGKsTttiGL~qa 20 (353)
|-|.||||+..-|+.-
T Consensus 28 pnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 28 PSAVGKSTVVRCLRER 43 (207)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhh
Confidence 7899999988766543
No 228
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=26.98 E-value=23 Score=31.08 Aligned_cols=16 Identities=31% Similarity=0.219 Sum_probs=13.2
Q ss_pred CCCCCcchhHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQA 20 (353)
Q Consensus 5 P~GEGKsTttiGL~qa 20 (353)
|-|+||||.+.-|++.
T Consensus 10 ~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAK 25 (301)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 6799999988877764
No 229
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=26.52 E-value=27 Score=31.15 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=15.9
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-+++.+.
T Consensus 46 ~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 46 TRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CTTSSHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999999988874
No 230
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=26.51 E-value=48 Score=31.32 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=21.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQP 36 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqP 36 (353)
|-|+||||+.--|..-+.. -+...+..+-+|
T Consensus 144 ~~GsGKTTll~~l~~~~~~-~~~g~I~~~e~~ 174 (372)
T 2ewv_A 144 PTGSGKSTTIASMIDYINQ-TKSYHIITIEDP 174 (372)
T ss_dssp SSSSSHHHHHHHHHHHHHH-HSCCEEEEEESS
T ss_pred CCCCCHHHHHHHHHhhcCc-CCCcEEEEeccc
Confidence 6799999999888887753 224445555554
No 231
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.45 E-value=22 Score=31.66 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=14.6
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||+..-|++.|
T Consensus 44 p~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 44 PNGTGKKTRCMALLESI 60 (354)
T ss_dssp STTSSHHHHHHTHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 77999999988887765
No 232
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}
Probab=26.35 E-value=32 Score=25.90 Aligned_cols=15 Identities=47% Similarity=0.771 Sum_probs=13.2
Q ss_pred hcCCCcCCCCCCCHHHH
Q psy7967 219 RLDINRTDPNTLTPEEI 235 (353)
Q Consensus 219 klgInk~~p~~lt~e~i 235 (353)
+||+|+|. +||+||.
T Consensus 55 ~lg~N~Fa--DlT~eEf 69 (80)
T 2l95_A 55 KMGINHLA--DLTPEEF 69 (80)
T ss_dssp CCCCCGGG--TSSHHHH
T ss_pred EecCcccc--cCCHHHH
Confidence 57899997 7999998
No 233
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=26.14 E-value=29 Score=30.43 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=15.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-+++.++
T Consensus 46 ~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 46 PPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CTTCCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999988887763
No 234
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.13 E-value=30 Score=29.95 Aligned_cols=18 Identities=39% Similarity=0.385 Sum_probs=16.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-+++.+.
T Consensus 50 ~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 50 MPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 789999999999999874
No 235
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=25.07 E-value=26 Score=28.75 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=13.2
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
|-|.||||++.-|+.
T Consensus 28 ~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 28 PYASGKTTLALQTGL 42 (220)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 789999999988876
No 236
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=24.94 E-value=54 Score=28.85 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.8
Q ss_pred CCCCCcchhHHHHHHHHHhh
Q psy7967 5 PLGEGKSTTTIGLAQALAAH 24 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~ 24 (353)
|-|.||||+..-+++.+...
T Consensus 53 ~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 53 LTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 67999999999998887543
No 237
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=24.82 E-value=34 Score=29.73 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.9
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|.|.|||+.++-+...+
T Consensus 13 ~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 13 TPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999998876654
No 238
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=24.66 E-value=24 Score=30.83 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=19.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQ 38 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~ 38 (353)
|-|.||||++.-+++.+ +. .+..+.-+++
T Consensus 62 p~GtGKT~la~~la~~~----~~-~~~~i~~~~l 90 (297)
T 3b9p_A 62 PPGNGKTLLARAVATEC----SA-TFLNISAASL 90 (297)
T ss_dssp SSSSCHHHHHHHHHHHT----TC-EEEEEESTTT
T ss_pred cCCCCHHHHHHHHHHHh----CC-CeEEeeHHHH
Confidence 77999999987776654 22 3555555554
No 239
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=24.55 E-value=26 Score=30.76 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=13.6
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||+...|+..+
T Consensus 81 p~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 81 PPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCcChHHHHHHHHHHHc
Confidence 67999999987776554
No 240
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=24.50 E-value=15 Score=31.15 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=16.1
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|+||||++--|...+..
T Consensus 10 ~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 10 TSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhh
Confidence 5699999999999888753
No 241
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=24.49 E-value=32 Score=29.01 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=13.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||+..=|+.-+
T Consensus 8 ~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 8 EPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999887776655
No 242
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=24.47 E-value=26 Score=29.15 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.2
Q ss_pred CCCCCcchhHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQA 20 (353)
Q Consensus 5 P~GEGKsTttiGL~qa 20 (353)
|-|.||||+..-|+-.
T Consensus 32 ~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 32 EFRTGKTQICHTLAVT 47 (243)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHH
Confidence 7799999998877653
No 243
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=24.43 E-value=46 Score=33.70 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=20.7
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVR 34 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lR 34 (353)
+.|+||||++.-|.+.|+. .|...+..++
T Consensus 404 lsGSGKSTiA~~La~~L~~-~G~~~~~~lD 432 (573)
T 1m8p_A 404 YMNSGKDAIARALQVTLNQ-QGGRSVSLLL 432 (573)
T ss_dssp STTSSHHHHHHHHHHHHHH-HCSSCEEEEE
T ss_pred CCCCCHHHHHHHHHHHhcc-cCCceEEEEC
Confidence 4699999999999999974 3522234443
No 244
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=24.36 E-value=19 Score=30.92 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=17.2
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|-|+||||+.--| ..+ + ..+...++|.
T Consensus 28 ~~GsGKSTl~~~L----~~~-~-g~v~~~~~~~ 54 (230)
T 2vp4_A 28 NIGSGKTTYLNHF----EKY-K-NDICLLTEPV 54 (230)
T ss_dssp STTSCHHHHHHTT----GGG-T-TTEEEECCTH
T ss_pred CCCCCHHHHHHHH----Hhc-c-CCeEEEecCH
Confidence 5799999966444 322 2 2356678884
No 245
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=24.09 E-value=32 Score=29.69 Aligned_cols=18 Identities=50% Similarity=0.752 Sum_probs=16.2
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||++.-+++.+.
T Consensus 46 ~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 46 PPGTGKTATAIALARDLF 63 (319)
T ss_dssp SSSSSHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHhc
Confidence 679999999999999874
No 246
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=24.06 E-value=27 Score=33.48 Aligned_cols=18 Identities=39% Similarity=0.717 Sum_probs=16.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++..|++.++
T Consensus 71 ppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 71 PPGTGKTALALAIAQELG 88 (456)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHhC
Confidence 789999999999988875
No 247
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=23.73 E-value=64 Score=28.35 Aligned_cols=25 Identities=28% Similarity=0.130 Sum_probs=18.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|-|.||||+..-|+-.+...-|+++
T Consensus 43 ~~G~GKTTl~~~ia~~~~~~~G~~v 67 (296)
T 1cr0_A 43 GSGMGKSTFVRQQALQWGTAMGKKV 67 (296)
T ss_dssp STTSSHHHHHHHHHHHHHHTSCCCE
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 6799999999888777653335444
No 248
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=23.68 E-value=27 Score=32.05 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=14.6
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||++..|++.+
T Consensus 80 p~GtGKT~la~~la~~l 96 (376)
T 1um8_A 80 PTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999998888776
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=23.56 E-value=30 Score=29.68 Aligned_cols=15 Identities=40% Similarity=0.474 Sum_probs=12.1
Q ss_pred CCCCCcchhHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQ 19 (353)
Q Consensus 5 P~GEGKsTttiGL~q 19 (353)
|-|.||||+.--|+.
T Consensus 31 psGsGKSTLl~~L~g 45 (218)
T 1z6g_A 31 PSGVGKGTLIKKLLN 45 (218)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 789999998776654
No 250
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=23.41 E-value=27 Score=28.16 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=13.1
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||+.-.|.-+|
T Consensus 34 ~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 34 ANGSGKSNIGDAILFVL 50 (182)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 56999999887666555
No 251
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=23.38 E-value=27 Score=31.91 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=14.3
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||++..|++.+
T Consensus 59 ppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 59 PTGSGKTLLAETLARLL 75 (363)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 78999999888777765
No 252
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=23.11 E-value=34 Score=30.27 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.5
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++.-+++.+..
T Consensus 52 ~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 6899999999999988854
No 253
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=23.07 E-value=32 Score=27.32 Aligned_cols=17 Identities=29% Similarity=0.143 Sum_probs=13.7
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.|||+++..+.+..
T Consensus 32 ~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 32 APGTGRMTGARYLHQFG 48 (145)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 67999999987776654
No 254
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=22.88 E-value=36 Score=32.92 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=16.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|-|.||||++.+|++.+.
T Consensus 209 ~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 209 EPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp CTTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 679999999999999985
No 255
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=22.86 E-value=22 Score=35.35 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=16.2
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++.-|+..++.
T Consensus 116 p~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 116 PPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp SSSSSHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHhcCC
Confidence 7899999999888888753
No 256
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=22.72 E-value=30 Score=31.03 Aligned_cols=14 Identities=36% Similarity=0.404 Sum_probs=12.1
Q ss_pred CCCCCcchhHHHHH
Q psy7967 5 PLGEGKSTTTIGLA 18 (353)
Q Consensus 5 P~GEGKsTttiGL~ 18 (353)
+-|+||||++--|+
T Consensus 83 ~~GSGKSTva~~La 96 (281)
T 2f6r_A 83 ISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 57999999988776
No 257
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=22.59 E-value=48 Score=32.22 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=21.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
|-|+|||||.--|..-+... ...|..+=+|-
T Consensus 175 pnGSGKTTlL~allg~l~~~--~g~I~~~ed~i 205 (418)
T 1p9r_A 175 PTGSGKSTTLYAGLQELNSS--ERNILTVEDPI 205 (418)
T ss_dssp STTSCHHHHHHHHHHHHCCT--TSCEEEEESSC
T ss_pred CCCCCHHHHHHHHHhhcCCC--CCEEEEecccc
Confidence 67999999999888777532 33466665653
No 258
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=22.49 E-value=36 Score=33.13 Aligned_cols=20 Identities=35% Similarity=0.425 Sum_probs=17.2
Q ss_pred CCCCCcchhHHHHHHHHHhh
Q psy7967 5 PLGEGKSTTTIGLAQALAAH 24 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~ 24 (353)
|-|.||||+...|++.|+..
T Consensus 32 ~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp CTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhCCC
Confidence 67999999999999988643
No 259
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=22.16 E-value=29 Score=30.80 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.3
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||++..+++.+
T Consensus 56 ~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 56 SPGTGKTTVAKALCHDV 72 (324)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 48999999988887765
No 260
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=22.12 E-value=21 Score=33.97 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=24.7
Q ss_pred CCCCcchhHHHHHHHHHhhcCCceeeEeeCCC
Q psy7967 6 LGEGKSTTTIGLAQALAAHKHKNTFACVRQPS 37 (353)
Q Consensus 6 ~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS 37 (353)
-|.||||+.-=|.+.|.. .|.+ +..+|+|+
T Consensus 95 DgAGKgt~Ik~L~e~Ldp-rg~~-V~~~~~Pt 124 (304)
T 3czq_A 95 DAAGKGGAIHATTANMNP-RSAR-VVALTKPT 124 (304)
T ss_dssp TTSSHHHHHHHHHTTSCT-TTEE-EEECCSCC
T ss_pred CCCCHHHHHHHHHHHhcc-cCCe-EEEeCCcC
Confidence 489999999999999874 4665 67799998
No 261
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=21.68 E-value=64 Score=26.71 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=16.8
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcee
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTF 30 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~ 30 (353)
+.|.||||.+.=++-......|++++
T Consensus 38 ~pG~GKT~l~l~~~~~~~~~~~~~v~ 63 (251)
T 2zts_A 38 GTGTGKTTFAAQFIYKGAEEYGEPGV 63 (251)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCce
Confidence 57999999998765432223456553
No 262
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=21.51 E-value=59 Score=29.63 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=21.9
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQG 39 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~G 39 (353)
|-|.|||+++..+++.+ ....+..+.-|++-
T Consensus 53 ppGtGKT~la~ala~~~----~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 53 PPGTGKSYLAKAVATEA----NNSTFFSISSSDLV 83 (322)
T ss_dssp SSSSCHHHHHHHHHHHT----TSCEEEEEECCSSC
T ss_pred CCCccHHHHHHHHHHHc----CCCcEEEEEhHHHH
Confidence 67999999988777654 33456667766653
No 263
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=21.32 E-value=56 Score=31.90 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=14.1
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|+|.|||||.+-...-|-
T Consensus 30 ~aGsGKT~~l~~ri~~l~ 47 (647)
T 3lfu_A 30 GAGSGKTRVLVHRIAWLM 47 (647)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 689999999887655553
No 264
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=21.29 E-value=49 Score=31.99 Aligned_cols=29 Identities=21% Similarity=0.126 Sum_probs=24.1
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhcCCceee
Q psy7967 2 TPTPLGEGKSTTTIGLAQALAAHKHKNTFA 31 (353)
Q Consensus 2 tPTP~GEGKsTttiGL~qal~~~lgk~~~~ 31 (353)
+=|.-.-||||||..|.++|.+ .|.++..
T Consensus 158 ~GTD~~VGK~~ts~~L~~~l~~-~G~~a~~ 186 (349)
T 2obn_A 158 VGTDMAIGKMSTSLELHWAAKL-RGWRSKF 186 (349)
T ss_dssp EESSSSSSHHHHHHHHHHHHHH-TTCCEEE
T ss_pred cCCCccccceeHHHHHHHHHHh-cCCcEEE
Confidence 3477889999999999999974 6888754
No 265
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=21.25 E-value=31 Score=30.94 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.8
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||++..|++.+
T Consensus 57 p~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 57 PPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SSSSSHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHh
Confidence 77999999987776654
No 266
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=21.25 E-value=49 Score=28.06 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=37.3
Q ss_pred hhHHHHHHhhhhcCCCceecCcceecHHHHHhhhhcCCCcCCCCCCCHHHHh-----------hhhcCCCCCCceee
Q psy7967 185 VNLEKHVSNGLKFGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEIT-----------KFVRLNINPDTISW 250 (353)
Q Consensus 185 ~nl~~hi~n~~~~gvP~vv~g~R~fs~~~~rrl~klgInk~~p~~lt~e~i~-----------~~n~L~IDp~~I~W 250 (353)
+....-++.++..++++.+... ++.+.+.|+++|+.++-..-.+-++.. --.+++++|+++..
T Consensus 119 p~~~~ll~~Lk~~g~~i~i~~~---~~~~~~~L~~~gl~~~Fd~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~l~ 192 (250)
T 4gib_A 119 PGIESLLIDVKSNNIKIGLSSA---SKNAINVLNHLGISDKFDFIADAGKCKNNKPHPEIFLMSAKGLNVNPQNCIG 192 (250)
T ss_dssp TTHHHHHHHHHHTTCEEEECCS---CTTHHHHHHHHTCGGGCSEECCGGGCCSCTTSSHHHHHHHHHHTCCGGGEEE
T ss_pred hhHHHHHHHHHhcccccccccc---cchhhhHhhhcccccccceeecccccCCCCCcHHHHHHHHHHhCCChHHeEE
Confidence 3445556667778888877643 345677899999976432223333222 23456777776543
No 267
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=21.24 E-value=61 Score=29.84 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=25.4
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCCCCccc
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFG 43 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~GP~FG 43 (353)
|-|.||||-.++++.-.. .-|++++ +=||+.+..+|
T Consensus 27 ~MgsGKTT~lL~~~~r~~-~~g~kvl--i~kp~~D~Ryg 62 (234)
T 2orv_A 27 PMFSGKSTELMRRVRRFQ-IAQYKCL--VIKYAKDTRYS 62 (234)
T ss_dssp CTTSCHHHHHHHHHHHHH-TTTCCEE--EEEETTCCCC-
T ss_pred CCCCcHHHHHHHHHHHHH-HCCCeEE--EEeecCCccch
Confidence 458999999999977653 3356654 34699887776
No 268
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=21.09 E-value=71 Score=29.72 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=23.5
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCceeeEeeCCCC
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQ 38 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~~~~lRqPS~ 38 (353)
|-|.||||+.--|+..+... +.+..+.-..|+-
T Consensus 82 ~pgaGKSTLln~L~~~~~~~-~~~v~V~~~dp~~ 114 (349)
T 2www_A 82 PPGAGKSTFIEYFGKMLTER-GHKLSVLAVDPSS 114 (349)
T ss_dssp CTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC--
T ss_pred CCCCCHHHHHHHHHHHhhhc-CCeEEEEeecCCC
Confidence 56999999999999888653 5565555566654
No 269
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=20.78 E-value=52 Score=31.42 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=17.6
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
|-|.||||+.-=|+--+... +.+.
T Consensus 165 ~nGsGKTTll~~Lag~l~~~-~G~V 188 (359)
T 2og2_A 165 VNGGGKTTSLGKLAHRLKNE-GTKV 188 (359)
T ss_dssp CTTSCHHHHHHHHHHHHHHT-TCCE
T ss_pred CCCChHHHHHHHHHhhcccc-CCEE
Confidence 67999999998888777533 4443
No 270
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=20.77 E-value=64 Score=30.99 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=16.3
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++..+++.+..
T Consensus 138 p~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 138 GVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SSSSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 6799999999999888754
No 271
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=20.69 E-value=41 Score=29.97 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.5
Q ss_pred CCCCCcchhHHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQALA 22 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~ 22 (353)
|.|.||||+..-+.+.+.
T Consensus 52 ~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 52 RPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 789999999988887774
No 272
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=20.63 E-value=39 Score=29.34 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=11.1
Q ss_pred CCCCCcchhHHHHH
Q psy7967 5 PLGEGKSTTTIGLA 18 (353)
Q Consensus 5 P~GEGKsTttiGL~ 18 (353)
|-|.||||+..-|+
T Consensus 30 ~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 30 PAGSGKTYLAMAKA 43 (208)
T ss_dssp CTTSSTTHHHHHHH
T ss_pred CCCCCHHHHHHHHh
Confidence 77999999876554
No 273
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=20.41 E-value=58 Score=29.08 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=16.5
Q ss_pred CCCCCcchhHHHHHHHHHh
Q psy7967 5 PLGEGKSTTTIGLAQALAA 23 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~ 23 (353)
|-|.||||++.-+++.+..
T Consensus 53 ~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 6799999999999888754
No 274
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=20.32 E-value=57 Score=32.76 Aligned_cols=24 Identities=33% Similarity=0.243 Sum_probs=19.0
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCce
Q psy7967 5 PLGEGKSTTTIGLAQALAAHKHKNT 29 (353)
Q Consensus 5 P~GEGKsTttiGL~qal~~~lgk~~ 29 (353)
+-|+||||++.-|.+.|+. .|+++
T Consensus 380 ~~GsGKSTia~~La~~L~~-~G~~~ 403 (546)
T 2gks_A 380 LPCAGKSTIAEILATMLQA-RGRKV 403 (546)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCCCCHHHHHHHHHHHhhh-cCCeE
Confidence 4699999999999999874 35443
No 275
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=20.21 E-value=37 Score=29.66 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=13.6
Q ss_pred CCCCCcchhHHHHHHHH
Q psy7967 5 PLGEGKSTTTIGLAQAL 21 (353)
Q Consensus 5 P~GEGKsTttiGL~qal 21 (353)
|-|.||||+.--|..-+
T Consensus 24 psGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 24 PSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhccC
Confidence 78999999987776544
Done!